Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 239 of 311
Found at i:80443209 original size:18 final size:18
Alignment explanation
Indices: 80443183--80443240 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
80443173 TTTTAAAAAA
*
80443183 TAAACAATTTAATTTAAT
1 TAAAAAATTTAATTTAAT
80443201 TAAAAAA-TTAATATTAAT
1 TAAAAAATTTAAT-TTAAT
* * *
80443219 GAATAAATTTAATTTAAA
1 TAAAAAATTTAATTTAAT
80443237 TAAA
1 TAAA
80443241 CATAGAAGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
17 5 0.16
18 22 0.69
19 5 0.16
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (18 bp):
TAAAAAATTTAATTTAAT
Found at i:80443922 original size:23 final size:23
Alignment explanation
Indices: 80443895--80443984 Score: 123
Period size: 23 Copynumber: 4.0 Consensus size: 23
80443885 GGCTTTGCCG
80443895 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
80443918 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* * **
80443941 TTCAGGCACCTCGTGTGTCGT-T
1 ATCAGGCACTTTATGTGTCGTAT
80443963 -TCAGGCAC-TTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
80443984 A
1 A
80443985 CTGATCAGGT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
20 9 0.15
21 9 0.15
22 1 0.02
23 40 0.68
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCGTAT
Found at i:80445317 original size:18 final size:19
Alignment explanation
Indices: 80445290--80445329 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
80445280 AAAAATTAAT
*
80445290 TTAAATTTAATAAGCATAA
1 TTAAATTTAATAAGCACAA
*
80445309 TTAAA-TTAATATGCACAA
1 TTAAATTTAATAAGCACAA
80445327 TTA
1 TTA
80445330 TTTTAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (19 bp):
TTAAATTTAATAAGCACAA
Found at i:80445351 original size:20 final size:18
Alignment explanation
Indices: 80445295--80445353 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
80445285 TTAATTTAAA
* * *
80445295 TTTAATAAGCATAATTAA
1 TTTAATATGCACAATTAT
*
80445313 ATTAATATGCACAATTAT
1 TTTAATATGCACAATTAT
*
80445331 TTTAATATTCAC-ATTAT
1 TTTAATATGCACAATTAT
80445348 TATTAA
1 T-TTAA
80445354 ATTAAATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
17 6 0.18
18 28 0.82
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.44
Consensus pattern (18 bp):
TTTAATATGCACAATTAT
Found at i:80445418 original size:16 final size:16
Alignment explanation
Indices: 80445394--80445424 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80445384 ATTTATAAAA
*
80445394 GAAACTTACTTTATAG
1 GAAAATTACTTTATAG
80445410 GAAAATTACTTTATA
1 GAAAATTACTTTATA
80445425 AAATTAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (16 bp):
GAAAATTACTTTATAG
Found at i:80446676 original size:21 final size:21
Alignment explanation
Indices: 80446654--80446692 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
80446644 TTTTTATGCT
*
80446654 TTTTTTTA-TTTTTTATTTCC
1 TTTTTCTACTTTTTTATTTCC
80446674 TTTTTCTACTTTTTTATTT
1 TTTTTCTACTTTTTTATTT
80446693 GTTTATCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTTCTACTTTTTTATTTCC
Found at i:80446701 original size:27 final size:27
Alignment explanation
Indices: 80446655--80446715 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 27
80446645 TTTTATGCTT
80446655 TTTTTTATTTTTTATTTCCTTTTTCTAC
1 TTTTTTATTTTTTA-TTCCTTTTTCTAC
*
80446683 TTTTTTATTTGTTTA-TCCTTTTTCTAT
1 TTTTTTATTT-TTTATTCCTTTTTCTAC
80446710 TTTTTT
1 TTTTTT
80446716 CCTATTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
27 17 0.55
28 10 0.32
29 4 0.13
ACGTcount: A:0.10, C:0.11, G:0.02, T:0.77
Consensus pattern (27 bp):
TTTTTTATTTTTTATTCCTTTTTCTAC
Found at i:80451559 original size:18 final size:18
Alignment explanation
Indices: 80451536--80451587 Score: 95
Period size: 18 Copynumber: 2.9 Consensus size: 18
80451526 AATTTATATG
*
80451536 AAAATCCCAGAAGGATTT
1 AAAATCCCTGAAGGATTT
80451554 AAAATCCCTGAAGGATTT
1 AAAATCCCTGAAGGATTT
80451572 AAAATCCCTGAAGGAT
1 AAAATCCCTGAAGGAT
80451588 ATAGAGTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.23
Consensus pattern (18 bp):
AAAATCCCTGAAGGATTT
Found at i:80457876 original size:40 final size:40
Alignment explanation
Indices: 80457811--80457890 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
80457801 GGAATAATTT
* * * *
80457811 TGAGGCAAGTTATTTGAATCTATTCTTTGAAAATCTTGCA
1 TGAGGCAAGTTAGTTAAATCCATTCTTTGAAAATATTGCA
80457851 TGAGGCAAGTTAGTTAAATCCATTCTTTGAAAATATTGCA
1 TGAGGCAAGTTAGTTAAATCCATTCTTTGAAAATATTGCA
80457891 CGACATTCCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (40 bp):
TGAGGCAAGTTAGTTAAATCCATTCTTTGAAAATATTGCA
Found at i:80459086 original size:35 final size:35
Alignment explanation
Indices: 80459042--80459186 Score: 175
Period size: 35 Copynumber: 4.1 Consensus size: 35
80459032 TCCTTATTGA
* *
80459042 AATACCATACCTACATTTCACAACTCGGTATAGGA-
1 AATACCATACCTACGTTTCACAACTCAGTAT-GGAT
** ** *
80459077 AATGTCATACCTACGTTTCTTAACTCAATATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
*
80459112 AATACCATACCTACGTTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
80459147 ATTACCATACCTACGTTTCACAAATCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
*
80459182 GATAC
1 AATAC
80459187 GTCTTATCTG
Statistics
Matches: 91, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
34 3 0.03
35 88 0.97
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:80461098 original size:11 final size:11
Alignment explanation
Indices: 80461069--80461109 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
80461059 TCTTACATAT
*
80461069 ATATATATT-T
1 ATATATATTAA
80461079 ATATATATTAA
1 ATATATATTAA
80461090 GAT-TATATTAA
1 -ATATATATTAA
80461101 ATATATATT
1 ATATATATT
80461110 GGTTATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
10 11 0.41
11 14 0.52
12 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (11 bp):
ATATATATTAA
Found at i:80467833 original size:23 final size:24
Alignment explanation
Indices: 80467782--80467834 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
80467772 TTATCCCTTG
*
80467782 AATATGTTAAAAATATTTTAATTAT
1 AATAT-TTAAAAATATTCTAATTAT
80467807 --TATTTAAAAATATTCT-ATTAT
1 AATATTTAAAAATATTCTAATTAT
80467828 AATATTT
1 AATATTT
80467835 GAATTGATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
21 5 0.20
22 12 0.48
23 8 0.32
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (24 bp):
AATATTTAAAAATATTCTAATTAT
Found at i:80473529 original size:5 final size:5
Alignment explanation
Indices: 80473519--80473546 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
80473509 ATCTGTGTTC
80473519 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
80473547 CACAAATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:80477608 original size:29 final size:29
Alignment explanation
Indices: 80477570--80477626 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
80477560 ATGGAAGAGG
* *
80477570 TGAAGAACTTGTTCGTTGAGAGTTCGTGA
1 TGAAGAACTTGTTCATTGAGAATTCGTGA
*
80477599 TGAAGAACTTGTTTATTGAGAATTCGTG
1 TGAAGAACTTGTTCATTGAGAATTCGTG
80477627 TCAATGTGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.26, C:0.09, G:0.28, T:0.37
Consensus pattern (29 bp):
TGAAGAACTTGTTCATTGAGAATTCGTGA
Found at i:80479210 original size:57 final size:56
Alignment explanation
Indices: 80479143--80479257 Score: 185
Period size: 57 Copynumber: 2.0 Consensus size: 56
80479133 ACAAACCCCG
* *
80479143 AATATAGACCGTGAAACGGATATAAAGAGTTCCAAAAAGACAAAAAAAAAACAAAGC
1 AATATAGACCGTAAAACGGATATAAAAAGTTCCAAAAAGAC-AAAAAAAAACAAAGC
* *
80479200 AATATAGACCGTAAAACGGATATAAAAAGTTTCAAAAAGACAAAACAAAACAAAGC
1 AATATAGACCGTAAAACGGATATAAAAAGTTCCAAAAAGACAAAAAAAAACAAAGC
80479256 AA
1 AA
80479258 ATTGGAAATC
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
56 16 0.30
57 38 0.70
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.13
Consensus pattern (56 bp):
AATATAGACCGTAAAACGGATATAAAAAGTTCCAAAAAGACAAAAAAAAACAAAGC
Found at i:80485356 original size:46 final size:46
Alignment explanation
Indices: 80485303--80485414 Score: 224
Period size: 46 Copynumber: 2.4 Consensus size: 46
80485293 TACATATCAA
80485303 AATGGGTTAAATCCCAAAAGTATACATGAACAATGGTTTAGTGTGC
1 AATGGGTTAAATCCCAAAAGTATACATGAACAATGGTTTAGTGTGC
80485349 AATGGGTTAAATCCCAAAAGTATACATGAACAATGGTTTAGTGTGC
1 AATGGGTTAAATCCCAAAAGTATACATGAACAATGGTTTAGTGTGC
80485395 AATGGGTTAAATCCCAAAAG
1 AATGGGTTAAATCCCAAAAG
80485415 CATAAATTAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.27
Consensus pattern (46 bp):
AATGGGTTAAATCCCAAAAGTATACATGAACAATGGTTTAGTGTGC
Found at i:80485792 original size:36 final size:34
Alignment explanation
Indices: 80485752--80485867 Score: 88
Period size: 43 Copynumber: 3.1 Consensus size: 34
80485742 GGGATGGAGG
80485752 TTATGATATAATGTTTATTATTTTGGGGTTTAGGAT
1 TTATGATATAATGTTTATTATTTT-GGGTTTAGG-T
* *
80485788 TTATGATTTAAGGTTTAATGTCCATGGTTTAAGGGTTTAAGGT
1 TTATGATATAATGTTT-AT-T--AT--TTT--GGGTTT-AGGT
* *
80485831 TTATGATATAATGTTTATTGTTTTTGGTTTAGAGT
1 TTATGATATAATGTTTATTATTTTGGGTTTAG-GT
80485866 TT
1 TT
80485868 TTGGTTTAGG
Statistics
Matches: 64, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
34 2 0.03
35 9 0.14
36 14 0.22
37 5 0.08
38 1 0.02
39 1 0.02
40 2 0.03
41 1 0.02
42 5 0.08
43 21 0.33
44 3 0.05
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.52
Consensus pattern (34 bp):
TTATGATATAATGTTTATTATTTTGGGTTTAGGT
Found at i:80485860 original size:14 final size:14
Alignment explanation
Indices: 80485850--80485902 Score: 70
Period size: 14 Copynumber: 3.8 Consensus size: 14
80485840 AATGTTTATT
80485850 GTTTTTGGTTTAGA
1 GTTTTTGGTTTAGA
*
80485864 GTTTTTGGTTTAGG
1 GTTTTTGGTTTAGA
* *
80485878 GTTTATGATTTAGA
1 GTTTTTGGTTTAGA
*
80485892 GTTTGTGGTTT
1 GTTTTTGGTTT
80485903 TTTGTTTTAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (14 bp):
GTTTTTGGTTTAGA
Found at i:80485874 original size:28 final size:28
Alignment explanation
Indices: 80485843--80485910 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
80485833 ATGATATAAT
* *
80485843 GTTTATTGTTTTTGGTTTAGAGTTTTTG
1 GTTTATTGTTTTTGATTTAGAGTTTGTG
** *
80485871 GTTTAGGGTTTATGATTTAGAGTTTGTG
1 GTTTATTGTTTTTGATTTAGAGTTTGTG
*
80485899 GTTTTTTGTTTT
1 GTTTATTGTTTT
80485911 ACAGTTAGGA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.12, C:0.00, G:0.26, T:0.62
Consensus pattern (28 bp):
GTTTATTGTTTTTGATTTAGAGTTTGTG
Found at i:80486333 original size:17 final size:18
Alignment explanation
Indices: 80486311--80486347 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
80486301 AATATTTATT
80486311 TTAATATA-TTAAAATTA
1 TTAATATAGTTAAAATTA
*
80486328 TTAATATAGTTTAAATTA
1 TTAATATAGTTAAAATTA
80486346 TT
1 TT
80486348 TAAGAGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TTAATATAGTTAAAATTA
Found at i:80486350 original size:19 final size:18
Alignment explanation
Indices: 80486310--80486350 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
80486300 TAATATTTAT
80486310 TTTAATATATTAAAATTA
1 TTTAATATATTAAAATTA
*
80486328 -TTAATATAGTTTAAATTA
1 TTTAATATA-TTAAAATTA
80486346 TTTAA
1 TTTAA
80486351 GAGATAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 8 0.40
18 8 0.40
19 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TTTAATATATTAAAATTA
Found at i:80490818 original size:31 final size:32
Alignment explanation
Indices: 80490780--80490851 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 32
80490770 TTGCTGTATT
80490780 TTATTTATATTTA-TATTT-AATCTA-ATTTTTA
1 TTATTTAT-TTTAGT-TTTGAATCTATATTTTTA
*
80490811 TTATTTATTTTAGTTTTGATTCTATATTTTTA
1 TTATTTATTTTAGTTTTGAATCTATATTTTTA
80490843 TT-TTTATTT
1 TTATTTATTT
80490852 GATAATGAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
30 7 0.19
31 21 0.57
32 9 0.24
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (32 bp):
TTATTTATTTTAGTTTTGAATCTATATTTTTA
Found at i:80490827 original size:19 final size:19
Alignment explanation
Indices: 80490804--80490850 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
80490794 ATTTAATCTA
*
80490804 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
80490822 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
80490842 ATTTTTATT
1 ATTTTTATT
80490851 TGATAATGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:80491050 original size:43 final size:43
Alignment explanation
Indices: 80490978--80491125 Score: 181
Period size: 43 Copynumber: 3.4 Consensus size: 43
80490968 TTTTAAATTT
* * * *
80490978 CATGATCTTTAGCGGCGTTTTTTG-GAAAAGTGCCGCTAAAGGC
1 CATGACCTTTAGCGGCG-TTTGTGAGAAAAGCGTCGCTAAAGGC
** * *
80491021 CATGTTCTTTAGCGGTGTTTGTGATAAAAGCGTCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGC
* * *
80491064 CATGACCTTTAGTGGCGTTTGTGGGGAAAGCGTCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGC
80491107 CATGACCTTTAGCGGCGTT
1 CATGACCTTTAGCGGCGTT
80491126 ATTTATAACG
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 5 0.06
43 85 0.94
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGC
Found at i:80501732 original size:5 final size:5
Alignment explanation
Indices: 80501722--80501746 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
80501712 AACCTTATTC
80501722 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
80501747 GAAGTCTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:80512184 original size:28 final size:28
Alignment explanation
Indices: 80512152--80512315 Score: 104
Period size: 28 Copynumber: 5.8 Consensus size: 28
80512142 GTGAAAATGA
**
80512152 CACTTAGTGTGCGAATTATTGAGGATGG
1 CACTTAGTGTGCGAAACATTGAGGATGG
** * *
80512180 CACTTAGTGTGCGAAACATCCAGAAATAG
1 CACTTAGTGTGCGAAACATTGAG-GATGG
* * *
80512209 CACTTACTGTGC-AAATTATTGAAGATGG
1 CACTTAGTGTGCGAAA-CATTGAGGATGG
80512237 CACTTAGTAG-GC-AAGACATCT-AGGATGG
1 CACTTAGT-GTGCGAA-ACAT-TGAGGATGG
* * * *
80512265 CACTTAGTGTGCGATACATCCG-TGAAGG
1 CACTTAGTGTGCGAAACAT-TGAGGATGG
* *
80512293 CACTGAGTGTGCGAAACTTTGAG
1 CACTTAGTGTGCGAAACATTGAG
80512316 AACAATACTT
Statistics
Matches: 102, Mismatches: 25, Indels: 18
0.70 0.17 0.12
Matches are distributed among these distances:
27 2 0.02
28 79 0.77
29 21 0.21
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (28 bp):
CACTTAGTGTGCGAAACATTGAGGATGG
Found at i:80524022 original size:32 final size:32
Alignment explanation
Indices: 80523963--80524024 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
80523953 TATGGTCTGG
* *
80523963 GCTATTTTTGACCGTGTAAGCCACACGGGCAT
1 GCTATTTTGGACCGTATAAGCCACACGGGCAT
* * *
80523995 GCTATTTTGGGCCGTATAGGCCTCACGGGC
1 GCTATTTTGGACCGTATAAGCCACACGGGC
80524025 GTATGGGCCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.27
Consensus pattern (32 bp):
GCTATTTTGGACCGTATAAGCCACACGGGCAT
Found at i:80524299 original size:17 final size:18
Alignment explanation
Indices: 80524277--80524310 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80524267 TGGTATATGT
*
80524277 TATTCTGTTT-TATCTGG
1 TATTCTATTTGTATCTGG
80524294 TATTCTATTTGTATCTG
1 TATTCTATTTGTATCTG
80524311 ACTACAAGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.59
Consensus pattern (18 bp):
TATTCTATTTGTATCTGG
Found at i:80526370 original size:33 final size:33
Alignment explanation
Indices: 80526321--80526437 Score: 121
Period size: 33 Copynumber: 3.6 Consensus size: 33
80526311 ATGGACCTTT
* * * *
80526321 CCTTTTCTAGTTGTACAC-CTGAGGTGCACATTC
1 CCTTTTCAAGTGGTACACAC-GAAGTGCACATAC
*
80526354 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGTGGTACACACGAAGTGCACATAC
* * * * *
80526387 CCTTTTCAATTTGTACATACAAAGTGCACATAG
1 CCTTTTCAAGTGGTACACACGAAGTGCACATAC
80526420 CCTTTTCAAGT-GTACACA
1 CCTTTTCAAGTGGTACACA
80526438 TATAGTGTAC
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
32 6 0.09
33 63 0.90
34 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACGAAGTGCACATAC
Found at i:80526456 original size:32 final size:33
Alignment explanation
Indices: 80526354--80526526 Score: 134
Period size: 33 Copynumber: 5.3 Consensus size: 33
80526344 GTGCACATTC
* * * **
80526354 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
* * * ** * **
80526387 CCTTTTCAATTTGTACATACAAAGTGCACATAG
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
* * *
80526420 CCTTTTCAAGT-GTACACATATAGTGTACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
*
80526452 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
* * **
80526485 CCTTTTTATA-TGGTATACACAAAGTATACCTAA
1 CCTTTTCA-AGTGGTACACACAAAGTATACCTTT
80526518 CCTTTTCAA
1 CCTTTTCAA
80526527 ATTGTACCAT
Statistics
Matches: 116, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
32 26 0.22
33 89 0.77
34 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACAAAGTATACCTTT
Found at i:80526474 original size:65 final size:66
Alignment explanation
Indices: 80526344--80526476 Score: 153
Period size: 65 Copynumber: 2.0 Consensus size: 66
80526334 TACACCTGAG
* * * *
80526344 GTGCACATTCCCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAATTTGTACATACAA
1 GTGCACATACCCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGTGGTACACACAA
80526409 A
66 A
* * * ** *
80526410 GTGCACATAGCCTTTTCAAGT-GTACACA-TATAGTGTACCTTTCCTTTTCAAGTGGTATACACA
1 GTGCACATACCCTTTTCAAGTGGTACACACGA-AGTGTACATACCCTTTTCAAGTGGTACACACA
80526473 AA
65 AA
80526475 GT
1 GT
80526477 ATACCTTTCC
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
64 1 0.02
65 36 0.64
66 19 0.34
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (66 bp):
GTGCACATACCCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGTGGTACACACAA
A
Found at i:80528954 original size:26 final size:26
Alignment explanation
Indices: 80528920--80528971 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
80528910 TCCATTCAAA
*
80528920 ATTTTCACAAATTTCCCCTTCACATC
1 ATTTGCACAAATTTCCCCTTCACATC
* * *
80528946 ATTTGCACAATTTTCCCTTTCCCATC
1 ATTTGCACAAATTTCCCCTTCACATC
80528972 TTTTTAAATC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.35, G:0.02, T:0.40
Consensus pattern (26 bp):
ATTTGCACAAATTTCCCCTTCACATC
Found at i:80536024 original size:39 final size:39
Alignment explanation
Indices: 80535866--80536025 Score: 257
Period size: 39 Copynumber: 4.1 Consensus size: 39
80535856 ATGCAAGACA
*
80535866 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
80535905 CTAGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
80535944 CTAGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
80535983 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
80536022 CTGG
1 CTGG
80536026 TAATATAATT
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:80546313 original size:17 final size:18
Alignment explanation
Indices: 80546291--80546327 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
80546281 TCGATTGGGT
80546291 TGTGTGGGCC-ACACGAG
1 TGTGTGGGCCAACACGAG
80546308 TGTGTGGGCCAACACGAG
1 TGTGTGGGCCAACACGAG
80546326 TG
1 TG
80546328 AACCACATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.19, C:0.22, G:0.41, T:0.19
Consensus pattern (18 bp):
TGTGTGGGCCAACACGAG
Found at i:80553304 original size:26 final size:25
Alignment explanation
Indices: 80553243--80553306 Score: 69
Period size: 26 Copynumber: 2.6 Consensus size: 25
80553233 ATAAAAAATC
* *
80553243 TTTCCCTTCACA--ATTTTCACAGT
1 TTTCCCTTCACATCATTTGCACAAT
*
80553266 TTTCCCTACCACATCATTTGCACAAT
1 TTTCCCT-TCACATCATTTGCACAAT
80553292 TTTCCCATTCACATC
1 TTTCCC-TTCACATC
80553307 TTTCTGTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 7 0.21
24 4 0.12
26 21 0.64
27 1 0.03
ACGTcount: A:0.23, C:0.34, G:0.03, T:0.39
Consensus pattern (25 bp):
TTTCCCTTCACATCATTTGCACAAT
Found at i:80567254 original size:12 final size:12
Alignment explanation
Indices: 80567237--80567262 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80567227 CAATTCCTGT
80567237 ATGCCTACAAAA
1 ATGCCTACAAAA
80567249 ATGCCTACAAAA
1 ATGCCTACAAAA
80567261 AT
1 AT
80567263 CAATTCAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.23, G:0.08, T:0.19
Consensus pattern (12 bp):
ATGCCTACAAAA
Found at i:80567709 original size:13 final size:13
Alignment explanation
Indices: 80567688--80567766 Score: 52
Period size: 13 Copynumber: 6.1 Consensus size: 13
80567678 TATGTTTGGC
80567688 AATGCTTTTGAAA
1 AATGCTTTTGAAA
*
80567701 AATGTTTTTGAAA
1 AATGCTTTTGAAA
* * *
80567714 AGTGCTGTGGAAA
1 AATGCTTTTGAAA
* * *
80567727 AGTACTTTT-AAGG
1 AATGCTTTTGAA-A
*
80567740 AGTGCTTTTGAAA
1 AATGCTTTTGAAA
* *
80567753 AGTGTTTTTGAAA
1 AATGCTTTTGAAA
80567766 A
1 A
80567767 TTTGAATGTT
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
12 2 0.04
13 48 0.92
14 2 0.04
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (13 bp):
AATGCTTTTGAAA
Found at i:80567735 original size:26 final size:26
Alignment explanation
Indices: 80567706--80567766 Score: 61
Period size: 26 Copynumber: 2.3 Consensus size: 26
80567696 TGAAAAATGT
80567706 TTTTGAAAAGTGCTGTGGAAAAGTAC
1 TTTTGAAAAGTGCTGTGGAAAAGTAC
* * * **
80567732 TTTT-AAGGAGTGCTTTTGAAAAGTGT
1 TTTTGAA-AAGTGCTGTGGAAAAGTAC
80567758 TTTTGAAAA
1 TTTTGAAAA
80567767 TTTGAATGTT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
25 2 0.07
26 23 0.85
27 2 0.07
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TTTTGAAAAGTGCTGTGGAAAAGTAC
Found at i:80568344 original size:3 final size:3
Alignment explanation
Indices: 80568336--80568371 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
80568326 TGATTCACCG
* *
80568336 TCA TCA TCA CCA TCA TCA TCG TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
80568372 CTTTCTCAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.36, G:0.03, T:0.31
Consensus pattern (3 bp):
TCA
Found at i:80568351 original size:12 final size:12
Alignment explanation
Indices: 80568330--80568368 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
80568320 ATTGTTTGAT
*
80568330 TCACCGTCATCA
1 TCACCATCATCA
80568342 TCACCATCATCA
1 TCACCATCATCA
**
80568354 TCGTCATCATCA
1 TCACCATCATCA
80568366 TCA
1 TCA
80568369 TCACTTTCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.38, G:0.05, T:0.28
Consensus pattern (12 bp):
TCACCATCATCA
Found at i:80570062 original size:72 final size:71
Alignment explanation
Indices: 80569728--80570064 Score: 385
Period size: 72 Copynumber: 4.7 Consensus size: 71
80569718 TCACCTGTGA
* * * * **
80569728 ATAAATTTTATATCC-AAAATCATATATAAACAACTATTGATAAAACTA-ATTTAGTATAAATAA
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGA-TTAACATAAATAA
80569791 GTAGAAC
65 GTAGAAC
* * * *
80569798 ATAAATTTAATATCCAAAAATCAAACATAATCAATTATTGATAAAACTA-CTCCTAAGCATAAAT
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGAT--TAA-CATAAAT
* *
80569862 AATTAGACC
63 AAGTAGAAC
* * * * * *
80569871 ATAAATTCAATGTCCAAATACCAACCATAAACAACTATTAATAAAACAAGATTACACATAAATAA
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTA-ACATAAATAA
80569936 GTAGAAC
65 GTAGAAC
* *
80569943 ATAAATTCAATATCCAAAAACTAAACATAAACAA-TCATTGATAAAACTAGATTACACATAAATA
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACT-ATTGATAAAACTAGATTA-ACATAAATA
*
80570007 AGTAAAAC
64 AGTAGAAC
*
80570015 ATAAATTTAATATCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
80570065 TTTAGCATTG
Statistics
Matches: 227, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
70 15 0.07
71 30 0.13
72 126 0.56
73 55 0.24
74 1 0.00
ACGTcount: A:0.54, C:0.15, G:0.05, T:0.27
Consensus pattern (71 bp):
ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTAACATAAATAAG
TAGAAC
Found at i:80570514 original size:18 final size:18
Alignment explanation
Indices: 80570493--80570540 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
80570483 TCCATCAATT
*
80570493 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
80570511 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
80570529 TGAACATCATTT
1 TGAACATCATTT
80570541 CTCACATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:80576034 original size:11 final size:10
Alignment explanation
Indices: 80576014--80576065 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
80576004 GTAAGACTTG
80576014 TTTTTAAAAA
1 TTTTTAAAAA
80576024 TTTTGTAAAAA
1 TTTT-TAAAAA
80576035 TTATTTAAAAA
1 TT-TTTAAAAA
* *
80576046 TATTAAAAAA
1 TTTTTAAAAA
* *
80576056 GTTGTAAAAA
1 TTTTTAAAAA
80576066 ACACTAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 17 0.50
11 15 0.44
12 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:80579646 original size:30 final size:30
Alignment explanation
Indices: 80579589--80579646 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
80579579 TATAATTTCA
* *
80579589 TTTTATTTTTATTTTAATTTGGCCCTAACC
1 TTTTATTTTTATTTCAATTTAGCCCTAACC
* *
80579619 TTTTATTTTTGTTTCAATTTAGTCCTAA
1 TTTTATTTTTATTTCAATTTAGCCCTAA
80579647 TAGCTATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.59
Consensus pattern (30 bp):
TTTTATTTTTATTTCAATTTAGCCCTAACC
Found at i:80579959 original size:20 final size:22
Alignment explanation
Indices: 80579934--80579973 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
80579924 ATTTGTTATA
80579934 TTATTTATAT-T-TTATTATTT
1 TTATTTATATATTTTATTATTT
80579954 TTATTTATATATTTTATTAT
1 TTATTTATATATTTTATTAT
80579974 ATATTAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 1 0.06
22 7 0.39
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (22 bp):
TTATTTATATATTTTATTATTT
Found at i:80579967 original size:22 final size:25
Alignment explanation
Indices: 80579920--80579973 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 25
80579910 TTTATTTATG
80579920 TATTATTTGTTATATTATTTATATTT
1 TATTATTTGTTATATTA-TTATATTT
80579946 TATTATTT-TTAT-TTA-TATATTT
1 TATTATTTGTTATATTATTATATTT
80579968 TATTAT
1 TATTAT
80579974 ATATTAAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 13 0.46
24 3 0.11
25 4 0.14
26 8 0.29
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (25 bp):
TATTATTTGTTATATTATTATATTT
Found at i:80579997 original size:23 final size:26
Alignment explanation
Indices: 80579966--80580028 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 26
80579956 ATTTATATAT
80579966 TTTATTATATATTAAATCA-TT-TTA
1 TTTATTATATATTAAATCATTTCTTA
*
80579990 -TTATTATATATT-ATTCATTTCTTA
1 TTTATTATATATTAAATCATTTCTTA
80580014 TTTTATTATATATTA
1 -TTTATTATATATTA
80580029 TGTTATCTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
22 4 0.12
23 14 0.42
24 3 0.09
26 12 0.36
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTATTATATATTAAATCATTTCTTA
Found at i:80580004 original size:33 final size:33
Alignment explanation
Indices: 80579922--80580004 Score: 82
Period size: 33 Copynumber: 2.5 Consensus size: 33
80579912 TATTTATGTA
* ** *
80579922 TTATTTGT-TATATTATTTATATTTTATTATTT
1 TTATTTATATATATTATTTATATTAAATCATTT
*
80579954 TTATTTATATATTTTATTATATATTAAATCA-TT
1 TTATTTATATATATTATT-TATATTAAATCATTT
80579987 TTA-TTATTATATATTATT
1 TTATTTA-TATATATTATT
80580005 CATTTCTTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
32 10 0.24
33 23 0.55
34 9 0.21
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (33 bp):
TTATTTATATATATTATTTATATTAAATCATTT
Found at i:80580039 original size:20 final size:20
Alignment explanation
Indices: 80580011--80580049 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80580001 TATTCATTTC
*
80580011 TTATTTTATTATATATTATG
1 TTATCTTATTATATATTATG
*
80580031 TTATCTTATTATTTATTAT
1 TTATCTTATTATATATTAT
80580050 TATATATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
TTATCTTATTATATATTATG
Found at i:80584016 original size:33 final size:33
Alignment explanation
Indices: 80583976--80584038 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
80583966 GAAAGAAAGA
*
80583976 AAAACTTGGAAGCAACACGTCTTTACGGTAGAG
1 AAAACTTGGAAGCAACACGTCCTTACGGTAGAG
*
80584009 AAAACTTGGAAGCAACACGTCCTTATGGTA
1 AAAACTTGGAAGCAACACGTCCTTACGGTA
80584039 CACGCACTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (33 bp):
AAAACTTGGAAGCAACACGTCCTTACGGTAGAG
Found at i:80592021 original size:45 final size:45
Alignment explanation
Indices: 80591972--80592307 Score: 255
Period size: 45 Copynumber: 7.5 Consensus size: 45
80591962 TTAGACAGGG
80591972 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * ** * *
80592017 AGCAGATCGAAGAT-GACAGATTTGGCATCTC-TGT-AATAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCGTGTGTTTACATC--GA
* *
80592062 AGCAGATCGAAGATAACAGATCTGACATCCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * * ** *
80592107 AGCAGATCGAAGAT-GACAGATTTGGCGTCTC-TGT-AATAGA-CGA
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCGTGTGTTTACATCGA
* *
80592150 GGAGCAGATCGAAGATAGTAGATCTGACATTTGTGTGTTTACATCGA
1 --AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * * * * * *
80592197 AGTAGATCGAAAAT-GACAGATTTGGC-GTC-TTTGTATTAGA-CGGA
1 AGCAGATCGAAGATAG-CAGATCTGACATTCGTGTGT-TTACATC-GA
*
80592241 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCGA
1 -AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
*
80592287 AGCAGATCGAAAATAGCAGAT
1 AGCAGATCGAAGATAGCAGAT
80592308 TTGGCATCTC
Statistics
Matches: 218, Mismatches: 49, Indels: 48
0.69 0.16 0.15
Matches are distributed among these distances:
43 9 0.04
44 17 0.08
45 164 0.75
46 19 0.09
47 9 0.04
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (45 bp):
AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
Found at i:80592040 original size:90 final size:89
Alignment explanation
Indices: 80591932--80592330 Score: 611
Period size: 90 Copynumber: 4.4 Consensus size: 89
80591922 CGGGGAACAA
*
80591932 ATCGAAGATGACAGATTTGGCGTTTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGAC-GGGAGCAGATCGAAGATAGCAGATCTGA
80591997 CATTCGTGTGTTTACATCGAAGCAG
65 CATTCGTGTGTTTACATCGAAGCAG
* * *
80592022 ATCGAAGATGACAGATTTGGCATCTCTGTAATAGACGGGGAGCAGATCGAAGATAACAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGAC-GGGAGCAGATCGAAGATAGCAGATCTGA
*
80592087 CATCCGTGTGTTTACATCGAAGCAG
65 CATTCGTGTGTTTACATCGAAGCAG
* *
80592112 ATCGAAGATGACAGATTTGGCGTCTCTGTAATAGACGAGGAGCAGATCGAAGATAGTAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACG-GGAGCAGATCGAAGATAGCAGATCTGA
* *
80592177 CATTTGTGTGTTTACATCGAAGTAG
65 CATTCGTGTGTTTACATCGAAGCAG
* * *
80592202 ATCGAAAATGACAGATTTGGCGTCTTTGTATTAGACGGAGAGCAGATCGAAGATAGAAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGG-GAGCAGATCGAAGATAGCAGATCTGA
80592267 CATTCGTGTGTTTACATCGAAGCAG
65 CATTCGTGTGTTTACATCGAAGCAG
* * *
80592292 ATCGAAAAT-AGCAGATTTGGCATCTCTGTATTTGACGGG
1 ATCGAAGATGA-CAGATTTGGCGTCTCTGTATTAGACGGG
80592331 GAGAAGCTCA
Statistics
Matches: 285, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
89 4 0.01
90 281 0.99
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (89 bp):
ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGAGCAGATCGAAGATAGCAGATCTGAC
ATTCGTGTGTTTACATCGAAGCAG
Found at i:80593770 original size:18 final size:17
Alignment explanation
Indices: 80593747--80593790 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
80593737 GAACTAACCC
**
80593747 TAAATTTTTATTTTTATT
1 TAAATTTTTATCCTT-TT
*
80593765 TAAATTTTAATCCTTTT
1 TAAATTTTTATCCTTTT
80593782 TAAATTTTT
1 TAAATTTTT
80593791 TATATATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (17 bp):
TAAATTTTTATCCTTTT
Found at i:80593839 original size:31 final size:30
Alignment explanation
Indices: 80593783--80593845 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
80593773 AATCCTTTTT
*
80593783 AAATTTTTTATATATAATTTATTTATT-TA
1 AAATGTTTTATATATAATTTATTTATTATA
*
80593812 AAATGTTTTATATATCATTTATTTTTATTATA
1 AAATGTTTTATATATAATTTA--TTTATTATA
80593844 AA
1 AA
80593846 CATTATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 19 0.66
31 6 0.21
32 4 0.14
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (30 bp):
AAATGTTTTATATATAATTTATTTATTATA
Found at i:80593887 original size:16 final size:16
Alignment explanation
Indices: 80593868--80593926 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 16
80593858 ATTTAAAAAA
80593868 TTATTATATATTTTTT
1 TTATTATATATTTTTT
* *
80593884 TTATTTATGTATTATTTG
1 TTA-TTATATATT-TTTT
80593902 TTA-TAT-TATTTATATT
1 TTATTATATATTT-T-TT
80593918 TTATTATAT
1 TTATTATAT
80593927 TTTATTTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
14 1 0.03
15 5 0.15
16 10 0.29
17 11 0.32
18 7 0.21
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.69
Consensus pattern (16 bp):
TTATTATATATTTTTT
Found at i:80593900 original size:11 final size:11
Alignment explanation
Indices: 80593884--80594030 Score: 75
Period size: 12 Copynumber: 12.8 Consensus size: 11
80593874 TATATTTTTT
*
80593884 TTATTTATGTA
1 TTATTTATATA
*
80593895 TTATTTGTTATA
1 TTATTT-ATATA
*
80593907 TTATTTATATT
1 TTATTTATATA
*
80593918 TTA-TTATATT
1 TTATTTATATA
80593928 TTATTTATATA
1 TTATTTATATA
*
80593939 TTTTATTATATA
1 TTAT-TTATATA
* * *
80593951 TTAAATCATTTTA
1 TT-ATTTA-TATA
*
80593964 TTATATATATTA
1 TTATTTATA-TA
*
80593976 TTCATTTCT-TA
1 TT-ATTTATATA
*
80593987 TTTTATTATATA
1 TTAT-TTATATA
*
80593999 TTATGTTATCTTA
1 TTAT-TTAT-ATA
80594012 TTATTTAT-TA
1 TTATTTATATA
*
80594022 TTATATATA
1 TTATTTATA
80594031 ATTTTAAAAT
Statistics
Matches: 103, Mismatches: 22, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
10 20 0.19
11 29 0.28
12 39 0.38
13 15 0.15
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (11 bp):
TTATTTATATA
Found at i:80593921 original size:23 final size:24
Alignment explanation
Indices: 80593884--80594036 Score: 76
Period size: 23 Copynumber: 6.6 Consensus size: 24
80593874 TATATTTTTT
* * *
80593884 TTATTTATGTATTATT-TGTTATA
1 TTATTTATATTTTATTATATTATA
*
80593907 TTATTTATATTTTATTATATTTTA
1 TTATTTATATTTTATTATATTATA
*
80593931 TT-TATATATTTTA-T-TA-TATA
1 TTATTTATATTTTATTATATTATA
*
80593951 TTA--AATCATTTTATTATA-TATA
1 TTATTTAT-ATTTTATTATATTATA
* *
80593973 TTATTCAT-TTCTTATTTTATTATA
1 TTATTTATATT-TTATTATATTATA
* *
80593997 -TATTATGTTATCTTATTAT-TTATTA
1 TTATT-T-ATATTTTATTATATTA-TA
*
80594022 TTATATATAATTTTA
1 TTATTTAT-ATTTTA
80594037 AAATTTACAA
Statistics
Matches: 99, Mismatches: 16, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
19 2 0.02
20 11 0.11
21 3 0.03
22 12 0.12
23 35 0.35
24 17 0.17
25 15 0.15
26 4 0.04
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (24 bp):
TTATTTATATTTTATTATATTATA
Found at i:80593939 original size:32 final size:33
Alignment explanation
Indices: 80593903--80593977 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
80593893 TATTATTTGT
* *
80593903 TATATTATTTATATTTTATTAT-ATTTTATT-TA
1 TATATTATTTATATATTA-AATCATTTTATTATA
*
80593935 TATATTTTATTATATATTAAATCATTTTATTATA
1 TATATTAT-TTATATATTAAATCATTTTATTATA
80593969 TATATTATT
1 TATATTATT
80593978 CATTTCTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 9 0.25
33 18 0.50
34 9 0.25
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (33 bp):
TATATTATTTATATATTAAATCATTTTATTATA
Found at i:80594012 original size:20 final size:20
Alignment explanation
Indices: 80593984--80594022 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80593974 TATTCATTTC
*
80593984 TTATTTTATTATATATTATG
1 TTATCTTATTATATATTATG
*
80594004 TTATCTTATTATTTATTAT
1 TTATCTTATTATATATTAT
80594023 TATATATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
TTATCTTATTATATATTATG
Found at i:80597580 original size:90 final size:90
Alignment explanation
Indices: 80597333--80597563 Score: 354
Period size: 90 Copynumber: 2.6 Consensus size: 90
80597323 AACTTTAATC
* * *
80597333 TGCAAATATGTTGTGCATTCACAACCATCTAACAACGTATTAACCTACAACACTGGTGGTTCATC
1 TGCAAATATGTTGTGCATTCACAACCATCTGACAGCGTATTAACCTACAACACTGGTGGTTTATC
*
80597398 CACCCACATTCTTACAGCTCCCATA
66 CACCCACATTCTGACAGCTCCCATA
* * **
80597423 TGCAAATATGTTGTGTATTCATAACCATCTGACAGCGTATTAACCTGTAACACTGGTGGTTTATC
1 TGCAAATATGTTGTGCATTCACAACCATCTGACAGCGTATTAACCTACAACACTGGTGGTTTATC
* *
80597488 CACCCACATTCTGGCAGCTCTCATA
66 CACCCACATTCTGACAGCTCCCATA
* *
80597513 TGCAAATATGTTGTGCATTCACAATCATCTGATAGCGTATTAACCTACAAC
1 TGCAAATATGTTGTGCATTCACAACCATCTGACAGCGTATTAACCTACAAC
80597564 TTTTATGGTT
Statistics
Matches: 125, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 125 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (90 bp):
TGCAAATATGTTGTGCATTCACAACCATCTGACAGCGTATTAACCTACAACACTGGTGGTTTATC
CACCCACATTCTGACAGCTCCCATA
Found at i:80599732 original size:33 final size:34
Alignment explanation
Indices: 80599678--80599748 Score: 110
Period size: 33 Copynumber: 2.1 Consensus size: 34
80599668 ATGAAAAAAG
80599678 TTGTTTTAGTTTTTTATTTTTTTAGTCTTTAAAT
1 TTGTTTTAGTTTTTTATTTTTTTAGTCTTTAAAT
*
80599712 TTGTTTT-TTTTTTTCA-TTTTTTAGTCTTTAAAT
1 TTGTTTTAGTTTTTT-ATTTTTTTAGTCTTTAAAT
80599745 TTGT
1 TTGT
80599749 CTCTCTCTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
33 27 0.77
34 8 0.23
ACGTcount: A:0.15, C:0.04, G:0.08, T:0.72
Consensus pattern (34 bp):
TTGTTTTAGTTTTTTATTTTTTTAGTCTTTAAAT
Found at i:80601786 original size:18 final size:18
Alignment explanation
Indices: 80601753--80601787 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80601743 CATTGTTAAG
*
80601753 TACTTTTGAGAGAAAAAA
1 TACTTTTGAAAGAAAAAA
*
80601771 TACTTTTGAAATAAAAA
1 TACTTTTGAAAGAAAAA
80601788 TATCGCTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.31
Consensus pattern (18 bp):
TACTTTTGAAAGAAAAAA
Found at i:80606191 original size:4 final size:4
Alignment explanation
Indices: 80606182--80606211 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
80606172 TTGAATGATG
80606182 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
80606212 GTTAATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:80607852 original size:21 final size:20
Alignment explanation
Indices: 80607822--80607875 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
80607812 ATTCAAAAAA
80607822 TAATATTATTTTAATAA-ATT
1 TAATATTATTTT-ATAATATT
80607842 TAATAATTATTTTATAATATT
1 TAAT-ATTATTTTATAATATT
80607863 T--TATTAATTTTAT
1 TAATATT-ATTTTAT
80607876 TAGTTTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
18 3 0.10
19 8 0.26
20 8 0.26
21 12 0.39
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TAATATTATTTTATAATATT
Found at i:80607858 original size:20 final size:21
Alignment explanation
Indices: 80607822--80607863 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
80607812 ATTCAAAAAA
80607822 TAATATTATTTTAATAA-ATT
1 TAATATTATTTTAATAATATT
80607842 TAATAATTATTTT-ATAATATT
1 TAAT-ATTATTTTAATAATATT
80607863 T
1 T
80607864 TATTAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TAATATTATTTTAATAATATT
Found at i:80609161 original size:22 final size:20
Alignment explanation
Indices: 80609136--80609186 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 20
80609126 AATCTCATTT
80609136 TCTTCTATTTCCTTTCTCTCCC
1 TCTTCT-TTTCCTTTCT-TCCC
*
80609158 TCTTTCTTTTCGTTTCTTCCC
1 TC-TTCTTTTCCTTTCTTCCC
*
80609179 TTTTCTTT
1 TCTTCTTT
80609187 CTTCTCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 6 0.23
21 5 0.19
22 11 0.42
23 4 0.15
ACGTcount: A:0.02, C:0.33, G:0.02, T:0.63
Consensus pattern (20 bp):
TCTTCTTTTCCTTTCTTCCC
Found at i:80609187 original size:14 final size:14
Alignment explanation
Indices: 80609163--80609203 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
80609153 CTCCCTCTTT
80609163 CTTTTCGTTTCTTCC
1 CTTTTC-TTTCTTCC
*
80609178 CTTTTCTTTCTTCT
1 CTTTTCTTTCTTCC
*
80609192 CATTTCTTTCTT
1 CTTTTCTTTCTT
80609204 TTTTCCATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.66
Consensus pattern (14 bp):
CTTTTCTTTCTTCC
Found at i:80613962 original size:40 final size:40
Alignment explanation
Indices: 80613917--80613999 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
80613907 ATAATTTATA
80613917 TTTTTATAATTTTTAAAACATTAAATTATTTTTTTCATTT
1 TTTTTATAATTTTTAAAACATTAAATTATTTTTTTCATTT
80613957 TTTTTATAATTTTTAAAACATTAAATTATTTTTTTCATTT
1 TTTTTATAATTTTTAAAACATTAAATTATTTTTTTCATTT
80613997 TTT
1 TTT
80614000 GGGCCAAAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (40 bp):
TTTTTATAATTTTTAAAACATTAAATTATTTTTTTCATTT
Found at i:80619945 original size:33 final size:35
Alignment explanation
Indices: 80619908--80619988 Score: 116
Period size: 35 Copynumber: 2.4 Consensus size: 35
80619898 TTTGATTCTA
80619908 TGGGTAATTT-TGA-AAGTTACCATTGATGAGTTC
1 TGGGTAATTTATGAGAAGTTACCATTGATGAGTTC
*
80619941 TGGGT-ATTTATGATGAATTTACCATTGATGAGTTC
1 TGGGTAATTTATGA-GAAGTTACCATTGATGAGTTC
80619976 TGGGT-ATTTATGA
1 TGGGTAATTTATGA
80619989 TGAATTAACA
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
32 4 0.09
33 8 0.18
35 32 0.73
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.42
Consensus pattern (35 bp):
TGGGTAATTTATGAGAAGTTACCATTGATGAGTTC
Found at i:80619964 original size:35 final size:35
Alignment explanation
Indices: 80619924--80619994 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
80619914 ATTTTGAAAG
80619924 TTACCATTGATGAGTTCTGGGTATTTATGATGAAT
1 TTACCATTGATGAGTTCTGGGTATTTATGATGAAT
80619959 TTACCATTGATGAGTTCTGGGTATTTATGATGAAT
1 TTACCATTGATGAGTTCTGGGTATTTATGATGAAT
80619994 T
1 T
80619995 AACATAGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.08, G:0.23, T:0.44
Consensus pattern (35 bp):
TTACCATTGATGAGTTCTGGGTATTTATGATGAAT
Found at i:80626787 original size:30 final size:30
Alignment explanation
Indices: 80626731--80626788 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
80626721 TATGAGCCTT
*
80626731 GGGGTAAAAATGTAAATATGTGAAAGTTTA
1 GGGGTAAAAATGTAAATATGTCAAAGTTTA
* *
80626761 GGGGT-AAAATGGTAATTTTGTCAAAGTT
1 GGGGTAAAAAT-GTAAATATGTCAAAGTT
80626789 CGTACTAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.38, C:0.02, G:0.28, T:0.33
Consensus pattern (30 bp):
GGGGTAAAAATGTAAATATGTCAAAGTTTA
Found at i:80629928 original size:17 final size:17
Alignment explanation
Indices: 80629901--80629933 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
80629891 TAAGTGCATT
80629901 TTTTTATGTTTTTGTTGA
1 TTTTTATG-TTTTGTTGA
80629919 TTTTTA-GTTTTGTTG
1 TTTTTATGTTTTGTTG
80629934 TTAATAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.53
17 1 0.07
18 6 0.40
ACGTcount: A:0.09, C:0.00, G:0.18, T:0.73
Consensus pattern (17 bp):
TTTTTATGTTTTGTTGA
Found at i:80630641 original size:25 final size:25
Alignment explanation
Indices: 80630602--80630655 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
80630592 TTAGTTTAGG
80630602 TTTTTTTTCTCTTCT-TTTCTTTCT
1 TTTTTTTTCTCTTCTCTTTCTTTCT
* * *
80630626 TTTTTTTTCTTTTTCTCTTTGTTTGT
1 TTTTTTTTC-TCTTCTCTTTCTTTCT
80630652 TTTT
1 TTTT
80630656 GCTGGAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 9 0.36
25 5 0.20
26 11 0.44
ACGTcount: A:0.00, C:0.15, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTTTTTCTCTTCTCTTTCTTTCT
Found at i:80630655 original size:22 final size:23
Alignment explanation
Indices: 80630601--80630655 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
80630591 TTTAGTTTAG
*
80630601 GTTTTTTTTCTCTTCTTTTCTTT
1 GTTTTTTTTCTCTTCTTCTCTTT
* *
80630624 CTTTTTTTT-TCTTTTTCTCTTT
1 GTTTTTTTTCTCTTCTTCTCTTT
80630646 GTTTGTTTTT
1 GTTT-TTTTT
80630656 GCTGGAACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 14 0.52
23 13 0.48
ACGTcount: A:0.00, C:0.15, G:0.05, T:0.80
Consensus pattern (23 bp):
GTTTTTTTTCTCTTCTTCTCTTT
Found at i:80636935 original size:27 final size:30
Alignment explanation
Indices: 80636868--80636929 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
80636858 ACTTATTTTG
*
80636868 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
*
80636898 TTGTTAATTTTATTATTATTTTAGAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
80636928 TT
1 TT
80636930 TCTTTTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGGCAT
Found at i:80637079 original size:12 final size:11
Alignment explanation
Indices: 80637052--80637086 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
80637042 TATATATATT
80637052 TAAAAATAATA
1 TAAAAATAATA
80637063 TAAAAATAATA
1 TAAAAATAATA
80637074 TAAAAATTAATA
1 TAAAAA-TAATA
80637086 T
1 T
80637087 GGGTGGACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:80647150 original size:41 final size:43
Alignment explanation
Indices: 80647072--80647188 Score: 141
Period size: 41 Copynumber: 2.7 Consensus size: 43
80647062 TTTAGGACGT
* *
80647072 TGGCATCGATATATGTGGTTACGTGTAAGAACATGTCTGGGACA-
1 TGGCATCG--ATATGTGATTACGTGTAAGACCATGTCTGGGACAG
* *
80647116 TCGGCATCG-TATTTGATT-CGTGTAAGACCCTGTCTGGGACAG
1 T-GGCATCGATATGTGATTACGTGTAAGACCATGTCTGGGACAG
*
80647158 TGGCATCGATATGTGATTACATGTAAGACCA
1 TGGCATCGATATGTGATTACGTGTAAGACCA
80647189 CGTCCGAGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
41 28 0.45
42 16 0.26
43 10 0.16
44 1 0.02
45 7 0.11
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
TGGCATCGATATGTGATTACGTGTAAGACCATGTCTGGGACAG
Found at i:80648437 original size:35 final size:35
Alignment explanation
Indices: 80648398--80648470 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
80648388 TGTGTATAAT
*
80648398 TGCTTGGTTATTTAATGAGTTAAAATATGTTTCAA
1 TGCTTGGTTATTTAATGAGTTAAAATAGGTTTCAA
80648433 TGCTTGGTTATTTAATGAGTTAAAATAGGTTTCAA
1 TGCTTGGTTATTTAATGAGTTAAAATAGGTTTCAA
80648468 TGC
1 TGC
80648471 ATGATTATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (35 bp):
TGCTTGGTTATTTAATGAGTTAAAATAGGTTTCAA
Found at i:80655997 original size:15 final size:15
Alignment explanation
Indices: 80655977--80656007 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80655967 CATGAAATTC
80655977 TCCATTTGCATCTTG
1 TCCATTTGCATCTTG
80655992 TCCATTTGCATCTTG
1 TCCATTTGCATCTTG
80656007 T
1 T
80656008 GGGTACCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.48
Consensus pattern (15 bp):
TCCATTTGCATCTTG
Found at i:80665843 original size:15 final size:15
Alignment explanation
Indices: 80665809--80665847 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
80665799 TTAGTCGATT
*
80665809 TTTC-TTTTTTTTAT
1 TTTCTTTTTTTTTAA
80665823 TATTCTTTTTTTTTAA
1 T-TTCTTTTTTTTTAA
80665839 TTTCTTTTT
1 TTTCTTTTT
80665848 CCATTCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 11 0.50
16 10 0.45
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTCTTTTTTTTTAA
Found at i:80670253 original size:16 final size:18
Alignment explanation
Indices: 80670206--80670254 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
80670196 AGAAAAAAAC
*
80670206 TATTTTTATTAATTTATA
1 TATTTTTATTTATTTATA
**
80670224 TATTTTTAAATATTT-T-
1 TATTTTTATTTATTTATA
80670240 TATTTTTATTTATTT
1 TATTTTTATTTATTT
80670255 GGCATACTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 13 0.50
17 1 0.04
18 12 0.46
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTTTTATTTATTTATA
Found at i:80672134 original size:25 final size:25
Alignment explanation
Indices: 80672106--80672201 Score: 113
Period size: 25 Copynumber: 3.8 Consensus size: 25
80672096 CTAGACATTT
* *
80672106 GGCTCACATGAGCTTCCCGATATAA
1 GGCTCATATGAGCTTCCCGTTATAA
*
80672131 GGCTCATATGAGCTTCCCGTTACTTA
1 GGCTCATATGAGCTTCCCGTTA-TAA
*
80672157 GG-TCATATGAGCTTCCCGTTATAT
1 GGCTCATATGAGCTTCCCGTTATAA
** *
80672181 GGCTCGGAAGAGCTTCCCGTT
1 GGCTCATATGAGCTTCCCGTT
80672202 TACATACTTG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
24 3 0.05
25 54 0.89
26 4 0.07
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (25 bp):
GGCTCATATGAGCTTCCCGTTATAA
Found at i:80673653 original size:22 final size:22
Alignment explanation
Indices: 80673623--80673667 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
80673613 AGATGATATG
*
80673623 AAATGTCTGTTAATTAATCTGTA
1 AAATGTCTGGTAA-TAATCTGTA
*
80673646 AAAT-TCTGGTAATACTCTGTA
1 AAATGTCTGGTAATAATCTGTA
80673667 A
1 A
80673668 CCCTGTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 7 0.35
23 4 0.20
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (22 bp):
AAATGTCTGGTAATAATCTGTA
Found at i:80688068 original size:24 final size:25
Alignment explanation
Indices: 80688018--80688084 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
80688008 TATATAAAGG
* * *
80688018 TTTAGAATAGATACTATAAAAGCAA
1 TTTAAAATAAATAATATAAAAGCAA
80688043 TTTAAAATAAATAATAT-AAAGCAA
1 TTTAAAATAAATAATATAAAAGCAA
*
80688067 TTTAAAAATCAATAATAT
1 TTT-AAAATAAATAATAT
80688085 TCAAAAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 10 0.27
25 27 0.73
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (25 bp):
TTTAAAATAAATAATATAAAAGCAA
Found at i:80688322 original size:27 final size:25
Alignment explanation
Indices: 80688290--80688384 Score: 77
Period size: 30 Copynumber: 3.6 Consensus size: 25
80688280 TGAAAGTAGT
80688290 TAACATATATAAAA-TAATATAACTAAA
1 TAACATATATAAAAGT--TATAA-TAAA
80688317 TAACATATA-AAAAGTTATAATAAA
1 TAACATATATAAAAGTTATAATAAA
* *
80688341 TAATATATATATCAAGTAGTTTAAAATAAA
1 TAACATATATA--AA--AG-TTATAATAAA
*
80688371 TAACATATAAAAAA
1 TAACATATATAAAA
80688385 TATTTAAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 15
0.75 0.05 0.20
Matches are distributed among these distances:
24 12 0.21
25 6 0.11
26 5 0.09
27 12 0.21
28 2 0.04
29 2 0.04
30 18 0.32
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (25 bp):
TAACATATATAAAAGTTATAATAAA
Found at i:80688390 original size:27 final size:27
Alignment explanation
Indices: 80688290--80688411 Score: 90
Period size: 27 Copynumber: 4.5 Consensus size: 27
80688280 TGAAAGTAGT
* * *
80688290 TAACATATATAAAATA-ATATAACTAAA
1 TAACATATAAAAAATATTTA-AAATAAA
* *
80688317 TAACATAT--AAAA-AGTTATAATAAA
1 TAACATATAAAAAATATTTAAAATAAA
* * *
80688341 TAATATATATATCAAGTAGTTTAAAATAAA
1 TAACATATA-A-AAAATA-TTTAAAATAAA
80688371 TAACATATAAAAAATATTTAAAATAAA
1 TAACATATAAAAAATATTTAAAATAAA
* *
80688398 TAATATGTAAAAAA
1 TAACATATAAAAAA
80688412 AATTAAAGAA
Statistics
Matches: 75, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
24 13 0.17
25 6 0.08
27 31 0.41
28 6 0.08
29 2 0.03
30 17 0.23
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.31
Consensus pattern (27 bp):
TAACATATAAAAAATATTTAAAATAAA
Found at i:80689440 original size:15 final size:18
Alignment explanation
Indices: 80689406--80689442 Score: 53
Period size: 15 Copynumber: 2.2 Consensus size: 18
80689396 TGTAAAAATA
80689406 AAAATGAAAAGAATCAAG
1 AAAATGAAAAGAATCAAG
80689424 AAAAT-AAAA-AA-CAAG
1 AAAATGAAAAGAATCAAG
80689439 AAAA
1 AAAA
80689443 GATCAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.42
16 2 0.11
17 4 0.21
18 5 0.26
ACGTcount: A:0.76, C:0.05, G:0.11, T:0.08
Consensus pattern (18 bp):
AAAATGAAAAGAATCAAG
Found at i:80689583 original size:21 final size:22
Alignment explanation
Indices: 80689559--80689599 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
80689549 TTCGTTTTTG
*
80689559 TCCATAT-TCGTTTTGTTTTCT
1 TCCATATGTCGTTTTCTTTTCT
*
80689580 TCCATTTGTCGTTTTCTTTT
1 TCCATATGTCGTTTTCTTTT
80689600 TTGTTTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.07, C:0.20, G:0.10, T:0.63
Consensus pattern (22 bp):
TCCATATGTCGTTTTCTTTTCT
Found at i:80690121 original size:44 final size:44
Alignment explanation
Indices: 80690071--80690275 Score: 205
Period size: 44 Copynumber: 4.7 Consensus size: 44
80690061 CTTTGATTCA
* * *
80690071 CTCCACTGCAACTTCAGGGAGATAATAATCATAACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAACCTG
* * * * * * ** *
80690115 CCCCACTGCAATTTCAGGGGGACAAGGTTTGTGGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAACCTG
* * * *
80690159 CTCTACTGCAACTTCAGAGAGATAAGATTTACATCTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAACCTG
* * ** *
80690203 CTCCACTGCAACTTCAGGGAGATAAGGTTAATGGCCTTC-ATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTAT-AACTTCAACCTG
80690247 CTCCACTGCAACTTCAGGGAGATAAGATT
1 CTCCACTGCAACTTCAGGGAGATAAGATT
80690276 CACCATGATA
Statistics
Matches: 127, Mismatches: 33, Indels: 2
0.78 0.20 0.01
Matches are distributed among these distances:
44 123 0.97
45 4 0.03
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAACCTG
Found at i:80690198 original size:88 final size:88
Alignment explanation
Indices: 80690071--80690278 Score: 283
Period size: 88 Copynumber: 2.4 Consensus size: 88
80690061 CTTTGATTCA
* * * * *
80690071 CTCCACTGCAACTTCAGGGAGATAATAATCATAACTTCAACCTGCCCCACTGCAATTTCAGGGGG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCACAACTTCAACCTGCCCCACTGCAACTTCAGGGAG
**
80690136 ACAAGGTTTGTGG-CTTCAATCTG
66 ACAAGGTTAATGGCCTTC-ATCTG
* * * * *
80690159 CTCTACTGCAACTTCAGAGAGATAAGATTTACATCTTCAACCTGCTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCACAACTTCAACCTGCCCCACTGCAACTTCAGGGAG
*
80690224 ATAAGGTTAATGGCCTTCATCTG
66 ACAAGGTTAATGGCCTTCATCTG
80690247 CTCCACTGCAACTTCAGGGAGATAAGATTCAC
1 CTCCACTGCAACTTCAGGGAGATAAGATTCAC
80690279 CATGATAGAT
Statistics
Matches: 103, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
88 99 0.96
89 4 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (88 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTCACAACTTCAACCTGCCCCACTGCAACTTCAGGGAG
ACAAGGTTAATGGCCTTCATCTG
Found at i:80690485 original size:193 final size:183
Alignment explanation
Indices: 80690159--80690648 Score: 508
Period size: 193 Copynumber: 2.6 Consensus size: 183
80690149 CTTCAATCTG
* * * *
80690159 CTCTACTGCAACTTCAGAGAGATAAGATT-TAC-ATCTTCAA-CCTGCTCCACTGCAACTTCAGG
1 CTCTACTGCAACTTCAGAGAAATAAGATTCT-CTATCTT-AAGTCTCCCCCACTGCAACTTCAGG
* * ** * *
80690221 GAGATAAG-GTTAATGGCCTTC-ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGA
64 GAGATAAGACTT-GT-AACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGATTCACCATGA
* *
80690284 TAGATTTGATCCGACCCACTGCGACTTCAAAGGTATAGGACTTGTAACTCGTAGCTTTAACCTA
127 TAGATTTGATCCGACCCACTACAACTTCAAAGGTATAGGA-TT-T-A----TAGCTTTAACCTA
* * * *
80690348 TTCTACTGCAACTTCAGGGAAATAAGATT-TGCTATCTTCAGTCTACCCCCACTGCAATTTCGAG
1 CTCTACTGCAACTTCAGAGAAATAAGATTCT-CTATCTTAAGTCT-CCCCCACTGCAACTTC-AG
* **
80690412 AAGG-GCTAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGATTCGTCATG
63 --GGAGATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGATTCACCATG
* * ** * * *
80690476 GTAGATTTGATTCGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAATCTG
126 ATAGATTTGATCCGACCCACTACAACTTCAAAGGTATAGGATTTATAGCTTTAACCTA
* * * *
80690534 CTCTACTGCAACTTCAGAGAGATAAGATTCTCTATCTTAAGTCTGCTCCACTGTAACTTCAGGGA
1 CTCTACTGCAACTTCAGAGAAATAAGATTCTCTATCTTAAGTCTCCCCCACTGCAACTTCAGGGA
*
80690599 GATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAAGGAGATAAG
66 GATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAG
80690649 GTTAGTGGCT
Statistics
Matches: 254, Mismatches: 37, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
182 2 0.01
183 48 0.19
184 2 0.01
185 12 0.05
186 49 0.19
187 1 0.00
189 29 0.11
190 8 0.03
191 14 0.06
192 8 0.03
193 77 0.30
194 4 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (183 bp):
CTCTACTGCAACTTCAGAGAAATAAGATTCTCTATCTTAAGTCTCCCCCACTGCAACTTCAGGGA
GATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGATTCACCATGATAGA
TTTGATCCGACCCACTACAACTTCAAAGGTATAGGATTTATAGCTTTAACCTA
Found at i:80690636 original size:44 final size:45
Alignment explanation
Indices: 80690531--80690648 Score: 141
Period size: 44 Copynumber: 2.6 Consensus size: 45
80690521 TAGCTTTAAT
* * * * * *
80690531 CTGCTCTACTGCAACTTCAGAGAGATAAGATTCTCTATCTTAAGT
1 CTGCTCCACTGTAACTTCAGGGAGATAAGACTCTCTAACTTAAGC
*
80690576 CTGCTCCACTGTAACTTCAGGGAGATAAGACT-TGTAACTTCAA-C
1 CTGCTCCACTGTAACTTCAGGGAGATAAGACTCTCTAACTT-AAGC
*
80690620 CTGCTCCACTGTAACTTCAAGGAGATAAG
1 CTGCTCCACTGTAACTTCAGGGAGATAAG
80690649 GTTAGTGGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 34 0.53
45 30 0.47
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (45 bp):
CTGCTCCACTGTAACTTCAGGGAGATAAGACTCTCTAACTTAAGC
Found at i:80690637 original size:89 final size:93
Alignment explanation
Indices: 80690413--80690648 Score: 227
Period size: 94 Copynumber: 2.6 Consensus size: 93
80690403 AATTTCGAGA
* * *
80690413 AGGGCTAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGATTCGTCATGGT
1 AGGGATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGAGAGATAAGATTCGTCATCGT
* * *
80690478 AGATTTGATTCGACCTGCTACAACTTCAG
66 AGATCTGACTCCACCTGCTA-AACTTCAG
* * * * * * * * * *
80690507 AGGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTC-TCTATCT
1 AGGGATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGAGAGATAAGATTCGTC-ATCG
80690571 TA-AGTCTG-CTCCA-CTG-T-AACTTCAG
65 TAGA-TCTGACTCCACCTGCTAAACTTCAG
80690596 -GGAGATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCA-AGGAGATAAG
1 AGG-GATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGA-GAGATAAG
80690649 GTTAGTGGCT
Statistics
Matches: 113, Mismatches: 25, Indels: 13
0.75 0.17 0.09
Matches are distributed among these distances:
88 3 0.03
89 47 0.42
91 1 0.01
92 3 0.03
93 6 0.05
94 53 0.47
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (93 bp):
AGGGATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGAGAGATAAGATTCGTCATCGT
AGATCTGACTCCACCTGCTAAACTTCAG
Found at i:80690832 original size:131 final size:131
Alignment explanation
Indices: 80690657--80690958 Score: 433
Period size: 131 Copynumber: 2.3 Consensus size: 131
80690647 AGGTTAGTGG
* * * * * * *
80690657 CTTCGATCTGTTCAATTGCAACTTCAGGGAAACAAGATCTACAATCTTTAGCCTACTCCACTACT
1 CTTCGACCTGTTCCACTGCAACTTCAAGGAGACAAGATCTACAATCTTCAACCTACTCCACTACT
* * * *
80690722 GCTTAGAGAGATAGGATGGTGGCTTAAATCTGTTCCACTACTGGTTAGGGAGACAAGATTCGCCG
66 GCTTAGAGAGATAGGAGGGTGGCTTAAATCTGCTCCACTACTGGTTAGAGAGACAAGATTCACCG
80690787 T
131 T
* *
80690788 CTTTGACCTGTTCCACTGCAACTTCAAGGAGACAAAATCTACAATCTTCAACCTACTCCACTACT
1 CTTCGACCTGTTCCACTGCAACTTCAAGGAGACAAGATCTACAATCTTCAACCTACTCCACTACT
* *
80690853 GCTTAGGGAGATAGGAGGGTGGCTTAAATCTGCTCCACTACTGGTTAGAGAGACAAGATTTACCG
66 GCTTAGAGAGATAGGAGGGTGGCTTAAATCTGCTCCACTACTGGTTAGAGAGACAAGATTCACCG
80690918 T
131 T
** * *
80690919 CTTCGATTTGTTTCACTGTAACTTCAAGGAGACAAGATCT
1 CTTCGACCTGTTCCACTGCAACTTCAAGGAGACAAGATCT
80690959 GTAAATTTAC
Statistics
Matches: 150, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
131 150 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (131 bp):
CTTCGACCTGTTCCACTGCAACTTCAAGGAGACAAGATCTACAATCTTCAACCTACTCCACTACT
GCTTAGAGAGATAGGAGGGTGGCTTAAATCTGCTCCACTACTGGTTAGAGAGACAAGATTCACCG
T
Found at i:80695112 original size:12 final size:12
Alignment explanation
Indices: 80695090--80695140 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
80695080 TGTTAGCCAG
80695090 TTGCTCTTGCAT
1 TTGCTCTTGCAT
*
80695102 TTG-TGCTTGCAA
1 TTGCT-CTTGCAT
80695114 TTGCTCTTGCAT
1 TTGCTCTTGCAT
*
80695126 AT-CTCTTTGCAT
1 TTGCTC-TTGCAT
80695138 TTG
1 TTG
80695141 TTCCAATCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
11 4 0.13
12 26 0.84
13 1 0.03
ACGTcount: A:0.12, C:0.22, G:0.18, T:0.49
Consensus pattern (12 bp):
TTGCTCTTGCAT
Found at i:80699152 original size:21 final size:22
Alignment explanation
Indices: 80699108--80699152 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
80699098 AGTATAAATA
*
80699108 TATATACATATATCATATAAGTT
1 TATATACA-ATATCATACAAGTT
*
80699131 TATATAC-ATATCATACATGTT
1 TATATACAATATCATACAAGTT
80699152 T
1 T
80699153 CCTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
23 7 0.35
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.44
Consensus pattern (22 bp):
TATATACAATATCATACAAGTT
Found at i:80699392 original size:24 final size:23
Alignment explanation
Indices: 80699338--80699396 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
80699328 TTCTCAATGT
* *
80699338 GTATATACTATGTAAATGTTTTA
1 GTATATAATATATAAATGTTTTA
*
80699361 GTACTATAATATATATATGTTTTTA
1 GTA-TATAATATATAAATG-TTTTA
*
80699386 TTATAT-ATATA
1 GTATATAATATA
80699397 CATTACGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
23 8 0.27
24 15 0.50
25 7 0.23
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.51
Consensus pattern (23 bp):
GTATATAATATATAAATGTTTTA
Found at i:80711702 original size:73 final size:72
Alignment explanation
Indices: 80711582--80711777 Score: 322
Period size: 72 Copynumber: 2.7 Consensus size: 72
80711572 CGATGTTTTT
* *
80711582 ATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
1 ATTTCTGTTTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG-CACGCTGA
80711646 GGTATTTTCA
63 GGTATTTTCA
80711656 ATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGT
1 ATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGT
80711721 ATTTTCA
66 ATTTTCA
* *
80711728 ATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCT
1 ATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
80711778 TTTAATTTCT
Statistics
Matches: 117, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
72 66 0.56
73 39 0.33
74 7 0.06
75 5 0.04
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
ATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGT
ATTTTCA
Found at i:80711809 original size:54 final size:55
Alignment explanation
Indices: 80711722--80711831 Score: 186
Period size: 54 Copynumber: 2.0 Consensus size: 55
80711712 CGCTGAGGTA
80711722 TTTTCAATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
* * *
80711777 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
80711831 T
1 T
80711832 CGGGACACGC
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
54 48 0.92
55 4 0.08
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (55 bp):
TTTTCAATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
Found at i:80711892 original size:127 final size:127
Alignment explanation
Indices: 80711650--80712047 Score: 681
Period size: 127 Copynumber: 3.1 Consensus size: 127
80711640 CGCTGAGGTA
*
80711650 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG-CACG
1 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* *
80711714 CTGAGGTATTTTCAATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
65 CTGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
*
80711777 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
*
80711842 TGAGGAATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
66 TGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
**
80711904 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAATACACGC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* *
80711969 TGAGGTATTTTCAATTTTTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 TGAGGTATTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
80712033 TTTTAATTTCTGTTT
1 TTTTAATTTCTGTTT
80712048 GAGGTGAGTT
Statistics
Matches: 257, Mismatches: 11, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
126 53 0.21
127 154 0.60
129 50 0.19
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (127 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
Found at i:80711936 original size:54 final size:55
Alignment explanation
Indices: 80711849--80711958 Score: 204
Period size: 54 Copynumber: 2.0 Consensus size: 55
80711839 CGCTGAGGAA
80711849 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
*
80711904 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
80711958 T
1 T
80711959 CAATACACGC
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 50 0.93
55 4 0.07
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (55 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
Found at i:80712166 original size:53 final size:53
Alignment explanation
Indices: 80712086--80712189 Score: 190
Period size: 53 Copynumber: 2.0 Consensus size: 53
80712076 AGGTATTTTC
80712086 AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTT
* *
80712139 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCT
80712190 CAATACACGC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (53 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTT
Found at i:80712213 original size:126 final size:128
Alignment explanation
Indices: 80712048--80712278 Score: 412
Period size: 126 Copynumber: 1.8 Consensus size: 128
80712038 ATTTCTGTTT
*
80712048 GAGGTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTGTTTTTC-AAAAATCAACTC
1 GAGGTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAATCAACTC
80712112 ATATTACGAGAAGTGAGTTGAGCC-TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGA
66 ATATTACGAGAAGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGA
80712174 GAGGTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAAATCAACT
1 GAGGTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTATTTTTC-AAAAAATCAACT
* *
80712239 CATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
65 CATATTACGAGAAGTGAGTTGAGCCTTTTAATTTCTGTTT
80712279 GAGGTGAGTT
Statistics
Matches: 99, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
126 51 0.52
128 34 0.34
129 14 0.14
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (128 bp):
GAGGTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAATCAACTC
ATATTACGAGAAGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGA
Found at i:80712226 original size:231 final size:232
Alignment explanation
Indices: 80711816--80712295 Score: 890
Period size: 231 Copynumber: 2.1 Consensus size: 232
80711806 CATATTGCGA
**
80711816 GAGGTGAGTTGAGCCTCGGGACACGCTGAGGAATTTTCAATTTCTGTTTTTCAAAAATCAACTCA
1 GAGGTGAGTTGAGCCTCAAGACACGCTGAGGAATTTTCAATTTCTGTTTTTCAAAAATCAACTCA
*
80711881 TATTACGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAG
66 TATTACGAGAAGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAG
* *
80711946 GTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTTTGTTTTTCAAAAAAATCAACTCAT
131 GTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCAT
80712011 ATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
196 ATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
* *
80712048 GAGGTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCA
1 GAGGTGAGTTGAGCCTCAAGACACGCTGAGGAATTTTCAATTTCTGTTTTTCAAAAATCAACTCA
80712113 TATTACGAGAAGTGAGTTGAGCC-TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAG
66 TATTACGAGAAGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAG
80712177 GTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCAT
131 GTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCAT
80712242 ATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
196 ATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
80712279 GAGGTGAGTTGAGCCTC
1 GAGGTGAGTTGAGCCTC
80712296 GGGTCACATG
Statistics
Matches: 241, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
231 158 0.66
232 83 0.34
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (232 bp):
GAGGTGAGTTGAGCCTCAAGACACGCTGAGGAATTTTCAATTTCTGTTTTTCAAAAATCAACTCA
TATTACGAGAAGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAG
GTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCAT
ATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
Found at i:80714603 original size:21 final size:22
Alignment explanation
Indices: 80714559--80714603 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
80714549 AGTATAAATA
*
80714559 TATATACATATATCATATAAGTT
1 TATATACA-ATATCATACAAGTT
*
80714582 TATATAC-ATATCATACATGTT
1 TATATACAATATCATACAAGTT
80714603 T
1 T
80714604 CCTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
23 7 0.35
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.44
Consensus pattern (22 bp):
TATATACAATATCATACAAGTT
Found at i:80715652 original size:24 final size:27
Alignment explanation
Indices: 80715599--80715660 Score: 85
Period size: 24 Copynumber: 2.4 Consensus size: 27
80715589 TGAAAGTAGT
80715599 TAACATATATAAAATAATATAACTAAA
1 TAACATATATAAAATAATATAACTAAA
*
80715626 TAACATATA-AAAAT-TTAT-ACTAAA
1 TAACATATATAAAATAATATAACTAAA
*
80715650 TAATATATATA
1 TAACATATATA
80715661 TCAAGTAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 14 0.44
25 4 0.12
26 5 0.16
27 9 0.28
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (27 bp):
TAACATATATAAAATAATATAACTAAA
Found at i:80715699 original size:27 final size:27
Alignment explanation
Indices: 80715599--80715728 Score: 99
Period size: 27 Copynumber: 4.9 Consensus size: 27
80715589 TGAAAGTAGT
* * *
80715599 TAACATATATAAAATA-ATATAACTAAA
1 TAACATATAAAAAATATTTA-AAATAAA
* *
80715626 TAACATAT--AAAA-ATTTATACTAAA
1 TAACATATAAAAAATATTTAAAATAAA
* * *
80715650 TAATATATATATCAAGTAGTTTAAAATAAA
1 TAACATATA-A-AAAATA-TTTAAAATAAA
80715680 TAACATATAAAAAATATTTAAAATAAA
1 TAACATATAAAAAATATTTAAAATAAA
* *
80715707 TAATATGTAAAAAA-ATTTAAAA
1 TAACATATAAAAAATATTTAAAA
80715729 GAACTAATGC
Statistics
Matches: 84, Mismatches: 12, Indels: 15
0.76 0.11 0.14
Matches are distributed among these distances:
24 14 0.17
25 6 0.07
26 8 0.10
27 31 0.37
28 6 0.07
29 2 0.02
30 17 0.20
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (27 bp):
TAACATATAAAAAATATTTAAAATAAA
Found at i:80715704 original size:23 final size:24
Alignment explanation
Indices: 80715677--80715777 Score: 68
Period size: 23 Copynumber: 4.2 Consensus size: 24
80715667 AGTTTAAAAT
*
80715677 AAATAACAT-ATAAAAAATATTTA
1 AAATAACATAATAAAAAAAATTTA
80715700 AAATAA-ATAATATGTAAAAAAATTTA
1 AAATAACATAATA---AAAAAAATTTA
* ** *
80715726 AAAGAAC-TAATGCAAAAGATTTA
1 AAATAACATAATAAAAAAAATTTA
**
80715749 AAATAAACAT-ATAAAATGAA-TTA
1 AAAT-AACATAATAAAAAAAATTTA
80715772 AAATAA
1 AAATAA
80715778 TACACAATAA
Statistics
Matches: 60, Mismatches: 11, Indels: 15
0.70 0.13 0.17
Matches are distributed among these distances:
22 4 0.07
23 28 0.47
24 8 0.13
25 1 0.02
26 19 0.32
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.27
Consensus pattern (24 bp):
AAATAACATAATAAAAAAAATTTA
Found at i:80718753 original size:50 final size:50
Alignment explanation
Indices: 80718660--80718755 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 50
80718650 ATTTGAATAG
* * *
80718660 TTAAATGGCAATTTTGTAACTTTTCATAAATAGATGATTAAAAAATATAA
1 TTAAATGACAATTTTATAACTTTTCATAAATAGATGATAAAAAAATATAA
* *
80718710 TTAAATGACTATTTTATAACCTTTT-ATAATTA-AGTGATAAAAAAAT
1 TTAAATGACAATTTTATAA-CTTTTCATAAATAGA-TGATAAAAAAAT
80718756 TACCTTAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
49 1 0.03
50 33 0.85
51 5 0.13
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (50 bp):
TTAAATGACAATTTTATAACTTTTCATAAATAGATGATAAAAAAATATAA
Found at i:80724050 original size:13 final size:13
Alignment explanation
Indices: 80724034--80724061 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
80724024 AACTTGAAAT
80724034 TCTATCAATTTAA
1 TCTATCAATTTAA
80724047 TCTATCAATTTAA
1 TCTATCAATTTAA
80724060 TC
1 TC
80724062 CCTAACACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (13 bp):
TCTATCAATTTAA
Found at i:80724245 original size:4 final size:4
Alignment explanation
Indices: 80724236--80724302 Score: 107
Period size: 4 Copynumber: 16.0 Consensus size: 4
80724226 CTAAATTTTC
80724236 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
80724284 CCTTT CCTTT CCTTT CTTT
1 -CTTT -CTTT -CTTT CTTT
80724303 TTCCCTTATT
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
4 48 0.77
5 14 0.23
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (4 bp):
CTTT
Found at i:80724376 original size:5 final size:5
Alignment explanation
Indices: 80724366--80724413 Score: 89
Period size: 5 Copynumber: 9.8 Consensus size: 5
80724356 ATTAAACTAT
80724366 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TAT-A TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
80724414 CTTAAATATT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.10
5 38 0.90
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:80727116 original size:40 final size:40
Alignment explanation
Indices: 80727072--80727149 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
80727062 TATGGTACCT
* *
80727072 TATGGTGTGTAGGGAT-GGATGGGATGATTATATCCCCATA
1 TATGGTATGCAGGGATAGG-TGGGATGATTATATCCCCATA
* *
80727112 TATGGTATGCAGGGATAGGTGGGTTGATTTTATCCCCA
1 TATGGTATGCAGGGATAGGTGGGATGATTATATCCCCA
80727150 CATAGTGCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.23, C:0.12, G:0.32, T:0.33
Consensus pattern (40 bp):
TATGGTATGCAGGGATAGGTGGGATGATTATATCCCCATA
Found at i:80730853 original size:44 final size:44
Alignment explanation
Indices: 80730781--80730867 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
80730771 TGATTCGTAG
* *
80730781 AAGGGTTCTCCTTGATTGCTGTGCCGTTGACTAAGTTACTGCGA
1 AAGGGTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCGA
*
80730825 AAGGGTTCTCCTTGATCGCTGCGTCGTTGACTAAGTTACTGCG
1 AAGGGTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCG
80730868 TAAATGAGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.33
Consensus pattern (44 bp):
AAGGGTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCGA
Found at i:80730881 original size:44 final size:44
Alignment explanation
Indices: 80730785--80730878 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
80730775 TCGTAGAAGG
* * *
80730785 GTTCTCCTTGATTGCTGTGCCGTTGACTAAGTTACTGCGAAAGG
1 GTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCGAAAGA
*
80730829 GTTCTCCTTGATCGCTGCGTCGTTGACTAAGTTACTGCGTAAATGA
1 GTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCG-AAA-GA
80730875 GTTC
1 GTTC
80730879 CTTTTGTCTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 36 0.82
45 3 0.07
46 5 0.11
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (44 bp):
GTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCGAAAGA
Found at i:80732144 original size:40 final size:40
Alignment explanation
Indices: 80732089--80732166 Score: 122
Period size: 40 Copynumber: 1.9 Consensus size: 40
80732079 TGCGGTACCT
*
80732089 TATGGTGTGTAGGGAT-GGATGGGACGATTGTATCCCCATA
1 TATGGTATGTAGGGATAGG-TGGGACGATTGTATCCCCATA
*
80732129 TATGGTATGTAGGGATAGGTGGGACGATTTTATCCCCA
1 TATGGTATGTAGGGATAGGTGGGACGATTGTATCCCCA
80732167 CATGGTGTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 33 0.94
41 2 0.06
ACGTcount: A:0.23, C:0.13, G:0.33, T:0.31
Consensus pattern (40 bp):
TATGGTATGTAGGGATAGGTGGGACGATTGTATCCCCATA
Found at i:80736384 original size:17 final size:17
Alignment explanation
Indices: 80736364--80736396 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80736354 CCCAATAAAA
*
80736364 ACAATAAACCAAAATAC
1 ACAAAAAACCAAAATAC
80736381 ACAAAAAACCAAAATA
1 ACAAAAAACCAAAATA
80736397 ATTAAATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.21, G:0.00, T:0.09
Consensus pattern (17 bp):
ACAAAAAACCAAAATAC
Found at i:80737635 original size:29 final size:29
Alignment explanation
Indices: 80737603--80737659 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
80737593 TTTTAATCCT
* *
80737603 TTTTAATTTTTTTATATATAATTTATTTA
1 TTTTAAATATTTTATATATAATTTATTTA
*
80737632 TTTTAAATATTTTATATATTATTTATTT
1 TTTTAAATATTTTATATATAATTTATTT
80737660 TTACTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (29 bp):
TTTTAAATATTTTATATATAATTTATTTA
Found at i:80737693 original size:19 final size:20
Alignment explanation
Indices: 80737665--80737702 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
80737655 TATTTTTACT
*
80737665 ATAAACATTATT-TATATAA
1 ATAAAAATTATTATATATAA
80737684 ATAAAAATTATTATATATA
1 ATAAAAATTATTATATATA
80737703 TTATTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
ATAAAAATTATTATATATAA
Found at i:80737707 original size:12 final size:12
Alignment explanation
Indices: 80737690--80737827 Score: 92
Period size: 12 Copynumber: 11.5 Consensus size: 12
80737680 ATAAATAAAA
80737690 ATTATTATATAT
1 ATTATTATATAT
* *
80737702 ATTATTTTTATTT
1 ATTA-TTATATAT
80737715 ATGTATTATTTATTAT
1 AT-TATTA--TA-TAT
80737731 ATTATT-TATAT
1 ATTATTATATAT
80737742 ATT-TTAT-TAT
1 ATTATTATATAT
80737752 A-TATTATATCAT
1 ATTATTATAT-AT
* *
80737764 TTTATTTTATAT
1 ATTATTATATAT
80737776 ATTATTCAT-TAT
1 ATTATT-ATATAT
* *
80737788 AATATT-TTTAT
1 ATTATTATATAT
*
80737799 TTTATTATATAT
1 ATTATTATATAT
*
80737811 TTTATTATAT-T
1 ATTATTATATAT
80737822 ATTATT
1 ATTATT
80737828 TATTATTTAA
Statistics
Matches: 100, Mismatches: 13, Indels: 27
0.71 0.09 0.19
Matches are distributed among these distances:
9 1 0.01
10 11 0.11
11 21 0.21
12 37 0.37
13 18 0.18
14 2 0.02
15 6 0.06
16 4 0.04
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (12 bp):
ATTATTATATAT
Done.