Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 24 of 311
Found at i:6711525 original size:87 final size:87
Alignment explanation
Indices: 6711172--6711571 Score: 327
Period size: 87 Copynumber: 4.6 Consensus size: 87
6711162 ATGCCAAATC
* * *
6711172 ATCTTGGATCTG-TTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTGTCTGCTCTCCGTCG
1 ATCTTGGATCTGCTTT-AGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCA
*
6711236 AATATGGAGACGTCAAATCTGTT
65 AATATGGAGACGCCAAATCTGTT
* * * * *
6711259 ATCTTGGATCTACTTTAGTA-AAATCATATGAAGGTTAGATCTGTTATGTATCTGCCCTCCGTCG
1 ATCTTGGATCTGCTTTAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCA
* *
6711323 AA-ATGGAGATGCCAGATCTGTT
65 AATATGGAGACGCCAAATCTGTT
* * * * * * *
6711345 ATCTTGGATCTGCTTTGGTGTGAGAACATCTGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCC
1 ATCTTGGATCTGCTTTAGTAT-A-AACATCTGAAGGTTAGATCTGCTATG---T-G-TCTG-CCC
* * ** * *
6711410 T-TGT-AAACA-CAAGAATGCCAAAAC----
58 TCCGTCAAATATGGAG-ACGCCAAATCTGTT
*
6711434 ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCAA
1 ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAA
*
6711499 ATATGGAGACGCCAGATCTGTT
66 ATATGGAGACGCCAAATCTGTT
* * * *
6711521 ATCTTGGA-CTGCTTTGATGTGAAAAACATCTGAAAGTCAAATCTGCTATGT
1 ATCTTGGATCTGCTTT-A-GT-ATAAACATCTGAAGGTTAGATCTGCTATGT
6711572 CTTCGATTTG
Statistics
Matches: 247, Mismatches: 43, Indels: 44
0.74 0.13 0.13
Matches are distributed among these distances:
81 3 0.01
82 4 0.02
83 12 0.05
84 3 0.01
86 44 0.18
87 86 0.35
88 26 0.11
89 47 0.19
91 1 0.00
92 4 0.02
93 14 0.06
94 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (87 bp):
ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAA
ATATGGAGACGCCAAATCTGTT
Found at i:6711569 original size:176 final size:176
Alignment explanation
Indices: 6711258--6711662 Score: 566
Period size: 176 Copynumber: 2.3 Consensus size: 176
6711248 TCAAATCTGT
* * * *
6711258 TATCTTGGATCTACTTTAGTA-AAATCATATGAAGGTTAGATCTGTTATGTATCTGCCCTCCGTC
1 TATCTTGGATCTGCTTTAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTATCTGCCCTCCATC
* * * *
6711322 GAAATGGAGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCTGAAAGTCAAAT
65 AAAATGGAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCTGAAAGTCAAAT
6711387 CTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAAAC
130 CTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAAAC
*
6711434 -ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCA
1 TATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCCCTCCATCA
6711498 AATATGGAGACGCCAGATCTGTTATCTTGGA-CTGCTTTGATGTGAAAAACATCTGAAAGTCAAA
66 AA-ATGGAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTG-AAAACATCTGAAAGTCAAA
* * *
6711562 TCTGCTATGTCTTCGATTTGTTCCTTGTAAAGACAAGAATGTCAAATC
129 TCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAAAC
* * **
6711610 TTGTTATCTTGGATCTGCTTCAGTGTAAACA-CGTGAAGGCCAGATCTGCTATG
1 ----TATCTTGGATCTGCTTTAGTATAAACATC-TGAAGGTTAGATCTGCTATG
6711663 CTTTGGATTG
Statistics
Matches: 204, Mismatches: 16, Indels: 13
0.88 0.07 0.06
Matches are distributed among these distances:
175 68 0.33
176 93 0.46
180 1 0.00
181 42 0.21
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (176 bp):
TATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCCCTCCATCA
AAATGGAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCTGAAAGTCAAATC
TGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAAAC
Found at i:6717758 original size:5 final size:5
Alignment explanation
Indices: 6717748--6717796 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
6717738 ATTAATATTT
* *
6717748 AAATA AAATA AAATA AAATA ATAA-A TAATA AAATA AAAAA TAAATA AAA
1 AAATA AAATA AAATA AAATA A-AATA AAATA AAATA AAATA -AAATA AAA
6717797 AGAAAAAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
4 2 0.05
5 29 0.78
6 6 0.16
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:6717788 original size:15 final size:15
Alignment explanation
Indices: 6717748--6717796 Score: 64
Period size: 15 Copynumber: 3.2 Consensus size: 15
6717738 ATTAATATTT
6717748 AAATAAAATAA-AATA
1 AAATAAAA-AATAATA
*
6717763 AAATAATAAATAATA
1 AAATAAAAAATAATA
6717778 AAATAAAAAATAAATA
1 AAATAAAAAAT-AATA
6717794 AAA
1 AAA
6717797 AGAAAAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 2 0.07
15 21 0.70
16 7 0.23
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (15 bp):
AAATAAAAAATAATA
Found at i:6730855 original size:45 final size:43
Alignment explanation
Indices: 6730782--6730866 Score: 100
Period size: 43 Copynumber: 1.9 Consensus size: 43
6730772 ATGAAATATG
* * * *
6730782 TATAATAATAATAATAATGTAACAAATATTTTACATATAAAAA
1 TATAATAATAATAATAATATAAAAAATATATAACATATAAAAA
6730825 TATAATAA-AATAAGTAATATAATAAGAATATATAACATATAA
1 TATAATAATAATAA-TAATATAA-AA-AATATATAACATATAA
6730867 TAAAATTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 5 0.14
43 15 0.43
44 1 0.03
45 14 0.40
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (43 bp):
TATAATAATAATAATAATATAAAAAATATATAACATATAAAAA
Found at i:6732879 original size:42 final size:43
Alignment explanation
Indices: 6732769--6732881 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 43
6732759 TATGTGTACG
* *
6732769 TGTAAGACCATGT-TTGAGACGTTGGCATCGATATGTGATTACA
1 TGTAAGACCATGTCTCG-GACGTTGGCATCAATATGTGATTACA
*
6732812 TGTAAGACCATGTCTCGGACATTGGCATCAATATGTGATTACA
1 TGTAAGACCATGTCTCGGACGTTGGCATCAATATGTGATTACA
* *
6732855 -GTAAGACC-TCGTCTGGGATGTTGGCAT
1 TGTAAGACCAT-GTCTCGGACGTTGGCAT
6732882 TGTACGATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.02
42 22 0.35
43 37 0.60
44 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTCGGACGTTGGCATCAATATGTGATTACA
Found at i:6733310 original size:19 final size:19
Alignment explanation
Indices: 6733286--6733383 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
6733276 AATCTTTAAG
*
6733286 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
6733305 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
6733324 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
6733341 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
6733360 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
6733381 GAT
1 GAT
6733384 CTTGTAATCT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
21 9 0.12
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:6733316 original size:36 final size:35
Alignment explanation
Indices: 6733276--6733361 Score: 106
Period size: 36 Copynumber: 2.4 Consensus size: 35
6733266 ATGGAAATAT
6733276 AATCTTTAAGGATATG-CAATATTAGATATGATATGC
1 AATCTTT-A-GATATGACAATATTAGATATGATATGC
*
6733312 AATC-TTAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAGATATG--ACAATATTAGATATGATATGC
6733348 AATC-TTAGATATGA
1 AATCTTTAGATATGA
6733362 TATGCAATCT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
33 6 0.13
34 2 0.04
35 2 0.04
36 36 0.78
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (35 bp):
AATCTTTAGATATGACAATATTAGATATGATATGC
Found at i:6733322 original size:14 final size:15
Alignment explanation
Indices: 6733305--6733361 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
6733295 TATTAGATAT
6733305 GATATG-CAATCTTA
1 GATATGACAATCTTA
6733319 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
6733336 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
6733355 GATATGA
1 GATATGA
6733362 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:6733362 original size:36 final size:37
Alignment explanation
Indices: 6733286--6733383 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
6733276 AATCTTTAAG
*
6733286 GATATGCAATATTAGATATGATATGCAATCTTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATCTTAGATAT
6733324 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
6733360 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
6733384 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
40 9 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:6736089 original size:12 final size:12
Alignment explanation
Indices: 6736072--6736096 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6736062 TAAAGTTATC
6736072 AAAAAGAGAAAG
1 AAAAAGAGAAAG
6736084 AAAAAGAGAAAG
1 AAAAAGAGAAAG
6736096 A
1 A
6736097 GAGAAGAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:6738625 original size:7 final size:7
Alignment explanation
Indices: 6738621--6738654 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
6738611 AAAAAAAATA
6738621 AAAAAAG
1 AAAAAAG
6738628 AAAAAA-
1 AAAAAAG
6738634 AGAAAAAG
1 A-AAAAAG
6738642 AAAAAAG
1 AAAAAAG
6738649 AAAAAA
1 AAAAAA
6738655 AAATGGAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 1 0.04
7 23 0.92
8 1 0.04
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:6738639 original size:14 final size:14
Alignment explanation
Indices: 6738622--6738657 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
6738612 AAAAAAATAA
6738622 AAAAAGAAAAAAAG
1 AAAAAGAAAAAAAG
6738636 AAAAAG-AAAAAAG
1 AAAAAGAAAAAAAG
6738649 AAAAA-AAAA
1 AAAAAGAAAA
6738658 TGGAGAGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAAG
Found at i:6739672 original size:44 final size:43
Alignment explanation
Indices: 6739616--6740400 Score: 468
Period size: 44 Copynumber: 17.9 Consensus size: 43
6739606 GATCCAAGAT
** *
6739616 GATTTGGCATCTCTGTATTGTTAGGGAGCAGATCGAAGATACCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
*
6739660 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG--ATA-C-A
* * ** * * *
6739707 -ATTTGGC-TTTCACGTATTTAC-GTTGAAGCAAATCTAAGAT---
1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGATCGAAGATACA
* *
6739747 GATTTAGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATGACT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* *
6739791 GATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-CA
* * ** * * *
6739838 GATTTGGC-TTTCATGTGTTTAC-GTTGAAGCAAATCTAAGAT---
1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGATCGAAGATACA
* *
6739879 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATTGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * *
6739923 GATTTGGCATCTCTGTATTGGTAGAGAACAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * **
6739967 GATTTGGCATCTCTATATTCGGCGGAGAGCAGATCGAAGACATAGTT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-CA
* * * ** *
6740014 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT---
1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATACA
*
6740055 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
* * *
6740099 GATTTGGCATCTCTATATTGGCAGAGAACAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* *
6740143 GATTTGGCATCTCTGTATTCGGC-GAAGAGCAGATTGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAG-AGAGCAGATCGAAG--ATA-CA
* * * ** * *
6740190 GATTTGGCTTCCACGTGT-TTACGTTGA-AGTA-AGTCTAAGAT---
1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATACA
* * *
6740231 GATTTGGCATCTTTGAATTGGCATAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* *
6740275 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * * * *
6740319 GATTTGGCGTCTCTGTATAGGCAAAGAGCATATCGAAGATAGAA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
** *
6740363 GATTTGGCATCTCTGTATTGTTAGAGAGCATAT-GAAGA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA
6740401 GAAGAACAAC
Statistics
Matches: 575, Mismatches: 108, Indels: 117
0.72 0.14 0.15
Matches are distributed among these distances:
39 10 0.02
40 49 0.09
41 48 0.08
42 8 0.01
43 6 0.01
44 270 0.47
45 61 0.11
46 27 0.05
47 77 0.13
48 13 0.02
49 6 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATACA
Found at i:6739879 original size:132 final size:130
Alignment explanation
Indices: 6739584--6739961 Score: 549
Period size: 132 Copynumber: 2.9 Consensus size: 130
6739574 AGATCTAACC
* ** * * ** *
6739584 TTCAAGTATTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTTAGGGAGCAGAT
1 TTCACGTATTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
* *
6739649 CGAAGATACCAGATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTAATTTGGC
66 CGAAGATA-CAGATTTGGCATCTCTGTATTGGTAGAGAGCAGATCGAAGACATAGCTAATTTGGC
6739714 T
130 T
*
6739715 TTCACGTATTTACGTTGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGGCAGAGAGCAGAT
1 TTCACGTATTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
* *
6739780 CGAAGATGACTGATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAGACATAGCTGATTTGG
66 CGAAGAT-ACAGATTTGGCATCTCTGTATT-GGTAGAGAGCAGATCGAAGACATAGCTAATTTGG
6739845 CT
129 CT
* * *
6739847 TTCATGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGTAGAT
1 TTCACGTATTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
* * *
6739912 TGAAGATAACAGATTTGGCATCTCTGTATTGGTAGAGAACAGATCAAAGA
66 CGAAGAT-ACAGATTTGGCATCTCTGTATTGGTAGAGAGCAGATCGAAGA
6739962 TGACAGATTT
Statistics
Matches: 223, Mismatches: 22, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
131 101 0.45
132 122 0.55
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (130 bp):
TTCACGTATTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
CGAAGATACAGATTTGGCATCTCTGTATTGGTAGAGAGCAGATCGAAGACATAGCTAATTTGGCT
Found at i:6739935 original size:176 final size:175
Alignment explanation
Indices: 6739747--6740336 Score: 910
Period size: 176 Copynumber: 3.4 Consensus size: 175
6739737 AATCTAAGAT
* * * *
6739747 GATTTAGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATGACTGATTTGGCATCTCTGTATTCG
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* * *
6739812 GTAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCTAAG
66 G-AGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
*
6739877 ATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATTGAAGATAACA
130 ATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAACA
* *
6739923 GATTTGGCATCTCTGTATTGGTAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTATATTCG
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* *
6739988 GCGGAGAGCAGATCGAAGACATAGTTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
66 G-AGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
*
6740053 ATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAGCA
130 ATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAACA
*
6740099 GATTTGGCATCTCTATATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* * *
6740164 GCGAAGAGCAGATTGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGTAAGTCTAAG
66 GAG-AGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
* * * *
6740229 ATGATTTGGCATCTTTGAATTGGCATAGAGCAGATCGAAGATAACA
130 ATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAACA
* * * * * *
6740275 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAT
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTAT
6740337 AGGCAAAGAG
Statistics
Matches: 380, Mismatches: 33, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
175 1 0.00
176 379 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (175 bp):
GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
GAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGA
TGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAACA
Found at i:6740551 original size:90 final size:87
Alignment explanation
Indices: 6740457--6740625 Score: 207
Period size: 90 Copynumber: 1.9 Consensus size: 87
6740447 CAAAATGATT
* * *
6740457 TGGCATTCTTGTGTTTACAGGGAAC-AGATTGAAGACATAGCAGA-TCTGACATTCCTGTGCTTA
1 TGGCATCCCTGTGTTTACAGGGAACAAG-TTGAAG--ATAGCAGATTCTG-CATCCCTGTGCTTA
6740520 CAGCGAAGCAGATCAAAGATTTTAACA
62 CAGCGAA-CAGATCAAAGATTTTAACA
* * * *
6740547 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTTGCATCCCTGTGTTTACAGG
1 TGGCATCCCTGTGTTTACAGGGAACAAGTTGAAGATAGCAGATTCTGCATCCCTGTGCTTACAGC
*
6740612 GAACAGATCGAAGA
66 GAACAGATCAAAGA
6740626 CATAGCAGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
87 10 0.14
88 26 0.38
89 3 0.04
90 28 0.41
91 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (87 bp):
TGGCATCCCTGTGTTTACAGGGAACAAGTTGAAGATAGCAGATTCTGCATCCCTGTGCTTACAGC
GAACAGATCAAAGATTTTAACA
Found at i:6740597 original size:44 final size:43
Alignment explanation
Indices: 6740456--6740731 Score: 173
Period size: 44 Copynumber: 6.2 Consensus size: 43
6740446 CCAAAATGAT
* *
6740456 TTGGCATTCTTGTGTTTACAGGGAACAGATTGAAGACATAGCAGA
1 TTGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGA
* * * * ** ***
6740501 TCTGACATTCCTGTGCTTACAGCGAAGCAGATCAAAGATTTTA-A
1 T-TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAGA
* *
6740545 CATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGA
1 -TTGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGA
* *
6740589 TTTTGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGA
1 -TTGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGA
* * * * * * **
6740635 TCTGACATTCTTATGCTTACAGCGAAGCAGATTGAAGATTTCAGCA
1 T-TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAG-A
* *
6740681 -TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGTAGA
1 TTGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGA
6740723 TTTGGCATC
1 -TTGGCATC
6740732 TCCATATTCG
Statistics
Matches: 172, Mismatches: 45, Indels: 29
0.70 0.18 0.12
Matches are distributed among these distances:
42 3 0.02
43 21 0.12
44 74 0.43
45 11 0.06
46 46 0.27
47 17 0.10
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (43 bp):
TTGGCATCCCTGTGTTTACAGGGAACAGATTGAAGATAGCAGA
Found at i:6740655 original size:46 final size:46
Alignment explanation
Indices: 6740460--6740790 Score: 163
Period size: 44 Copynumber: 7.3 Consensus size: 46
6740450 AATGATTTGG
*
6740460 CATTCTTGTGTTTACAGGGAACAGATTGAAGACATAGCAGATCTGA
1 CATTCCTGTGTTTACAGGGAACAGATTGAAGACATAGCAGATCTGA
* * * * *** *
6740506 CATTCCTGTGCTTACAGCGAAGCAGA-TCAA-AGATTTTA-A-CATGG
1 CATTCCTGTGTTTACAGGGAA-CAGATTGAAGACATAGCAGATC-TGA
* * *
6740550 CATCCCTGTGTTTATAGGGAACA-AGTTGAAG--ATAGCAGATTTTG-
1 CATTCCTGTGTTTACAGGGAACAGA-TTGAAGACATAGCAGA-TCTGA
* *
6740594 CATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
1 CATTCCTGTGTTTACAGGGAACAGATTGAAGACATAGCAGATCTGA
* * * * ** *
6740640 CATTCTTATGCTTACAGCGAAGCAGATTGAAG--ATTTCAG--CATGG
1 CATTCCTGTGTTTACAGGGAA-CAGATTGAAGACATAGCAGATC-TGA
* * * * *
6740684 CATCCCTGTGTTTATAGGGAACA-AGTTGAAG--ATAGTAGATTTGG
1 CATTCCTGTGTTTACAGGGAACAGA-TTGAAGACATAGCAGATCTGA
* ** * * * *
6740728 CATCTCCATAT-TCGACGGGGAGCAGATTAAAGACATAGTAGATCTGA
1 CAT-TCC-TGTGTTTACAGGGAACAGATTGAAGACATAGCAGATCTGA
*
6740775 CATTCATGTGTTTACA
1 CATTCCTGTGTTTACA
6740791 TCAAAGCAGA
Statistics
Matches: 207, Mismatches: 55, Indels: 46
0.67 0.18 0.15
Matches are distributed among these distances:
42 2 0.01
43 19 0.09
44 74 0.36
45 32 0.15
46 53 0.26
47 27 0.13
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (46 bp):
CATTCCTGTGTTTACAGGGAACAGATTGAAGACATAGCAGATCTGA
Found at i:6740693 original size:134 final size:134
Alignment explanation
Indices: 6740453--6740808 Score: 462
Period size: 134 Copynumber: 2.6 Consensus size: 134
6740443 GATCCAAAAT
* * * *
6740453 GATTTGGCATTCTTGTGTTTACAGGGAACAGATTGAAGACATAGCAGATCTGACATTCCTGTGCT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
*
6740518 TACAGCGAAGCAGATCAAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
6740583 AGCA
131 AGCA
* *
6740587 GATTTTGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCTTATGCT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
** *
6740652 TACAGCGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
*
6740717 AGTA
131 AGCA
* ** * * ** * * *
6740721 GATTTGGCATCTCCATAT-TCGACGGGGAGCAGATTAAAGACATAGTAGATCTGACATTCATGTG
1 GATTTGGCATC-CC-TGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATG
* * * *
6740785 TTTACATCAAAGCAGATCTAAGAT
64 CTTACAGCGAAGCAGATCAAAGAT
6740809 GACAGATTTG
Statistics
Matches: 193, Mismatches: 27, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
134 133 0.69
135 58 0.30
136 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (134 bp):
GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
AGCA
Found at i:6740930 original size:44 final size:45
Alignment explanation
Indices: 6740795--6740949 Score: 172
Period size: 45 Copynumber: 3.5 Consensus size: 45
6740785 TTTACATCAA
* *
6740795 AGCAGATCT-AAGATGACAGATTTGGCATCTTTGTATTAGACGGGG
1 AGCAGAT-TGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * * *
6740840 AGCAAATTGGAGATAACAGATTTGACATTTCTGTATTAGACGGGG
1 AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
6740885 AGCAGATTGAAGA-AGCA-ATTTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATTGAAGATAACAGA-TTTGGCATCTCTGTATTAGACGGGG
** *
6740929 AGCAGATCAAAGATAGCAGAT
1 AGCAGATTGAAGATAACAGAT
6740950 ATCACCTTCC
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
43 1 0.01
44 37 0.40
45 53 0.58
46 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.26
Consensus pattern (45 bp):
AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:6741652 original size:20 final size:21
Alignment explanation
Indices: 6741615--6741655 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
6741605 TGCAGTGTTG
* *
6741615 AAAATTTTCATGATTTTCTGA
1 AAAATTCTCATGAGTTTCTGA
6741636 AAAATTCTC-TGAGTTTCTGA
1 AAAATTCTCATGAGTTTCTGA
6741656 TTTAGTCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (21 bp):
AAAATTCTCATGAGTTTCTGA
Found at i:6746170 original size:51 final size:51
Alignment explanation
Indices: 6746087--6746195 Score: 130
Period size: 51 Copynumber: 2.1 Consensus size: 51
6746077 AAATGAGCTT
* * * * *
6746087 TACCATCCAAGAACACGCCTGGGCACTGAGTGCTAAGCCTGTAGGCTAAACA
1 TACC-TCCAAAAACACGCCTGGGCACTAAGTGCCAAGCCTATAAGCTAAACA
* * *
6746139 TACCTCCAAAAACATGCTTGGGCACTAAGTGCCAAGCCTATAAGCTACACA
1 TACCTCCAAAAACACGCCTGGGCACTAAGTGCCAAGCCTATAAGCTAAACA
6746190 T-CCTCC
1 TACCTCC
6746196 CGCAGAAACA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 5 0.10
51 40 0.82
52 4 0.08
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.19
Consensus pattern (51 bp):
TACCTCCAAAAACACGCCTGGGCACTAAGTGCCAAGCCTATAAGCTAAACA
Found at i:6749246 original size:19 final size:19
Alignment explanation
Indices: 6749222--6749258 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
6749212 GTTCATATAA
*
6749222 TAACTAATTTGGTTCAAAC
1 TAACTAATTTGATTCAAAC
*
6749241 TAACTACTTTGATTCAAA
1 TAACTAATTTGATTCAAA
6749259 ATTCTAAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
TAACTAATTTGATTCAAAC
Found at i:6756256 original size:21 final size:22
Alignment explanation
Indices: 6756232--6756274 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6756222 TATTCATTTA
* *
6756232 TTTATAATTC-TATGTGTTTTT
1 TTTATAAATCTTATGTATTTTT
6756253 TTTATAAATCTTATGTATTTTT
1 TTTATAAATCTTATGTATTTTT
6756275 ATCGAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (22 bp):
TTTATAAATCTTATGTATTTTT
Found at i:6759890 original size:19 final size:19
Alignment explanation
Indices: 6759866--6759903 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
6759856 GTTGCCATAC
6759866 ACTACCACCTTATTTCCTT
1 ACTACCACCTTATTTCCTT
6759885 ACTACCACCTTATTTCCTT
1 ACTACCACCTTATTTCCTT
6759904 CTCTGTATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.37, G:0.00, T:0.42
Consensus pattern (19 bp):
ACTACCACCTTATTTCCTT
Found at i:6760778 original size:17 final size:17
Alignment explanation
Indices: 6760758--6760828 Score: 65
Period size: 17 Copynumber: 4.1 Consensus size: 17
6760748 ATTTTTAGAG
*
6760758 TTAAATATATAATTTAA
1 TTAAAAATATAATTTAA
*
6760775 TTAAATAT-TAATTTTAA
1 TTAAAAATATAA-TTTAA
*
6760792 TTAAAAAAAATAAATTT-A
1 TT-AAAAATAT-AATTTAA
*
6760810 TAAAAAATATAATTTAA
1 TTAAAAATATAATTTAA
6760827 TT
1 TT
6760829 TTATAACACT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
16 8 0.18
17 24 0.55
18 6 0.14
19 4 0.09
20 2 0.05
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAAAATATAATTTAA
Found at i:6760816 original size:16 final size:16
Alignment explanation
Indices: 6760796--6760825 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6760786 TTTTAATTAA
6760796 AAAAAATA-AATTTAT
1 AAAAAATATAATTTAT
6760811 AAAAAATATAATTTA
1 AAAAAATATAATTTA
6760826 ATTTTATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAAAATATAATTTAT
Found at i:6761980 original size:27 final size:27
Alignment explanation
Indices: 6761925--6761986 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
6761915 TATACAAACA
* *
6761925 ATATAAAAATTTTAAATCAAGTAATAG
1 ATATAAAAATTTAAAATCAAGTAAAAG
*
6761952 ATATAAAAGTTTAAAAT-AAGTAAAA-
1 ATATAAAAATTTAAAATCAAGTAAAAG
*
6761977 AGATAAAAAT
1 ATATAAAAAT
6761987 AAATAATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 8 0.27
26 7 0.23
27 15 0.50
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (27 bp):
ATATAAAAATTTAAAATCAAGTAAAAG
Found at i:6762069 original size:3 final size:3
Alignment explanation
Indices: 6762063--6762090 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6762053 ACATAGAAAT
6762063 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
6762091 AAGTTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:6762268 original size:17 final size:15
Alignment explanation
Indices: 6762229--6762273 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
6762219 TATAAATAGG
*
6762229 AATAGAAATACAATA
1 AATAGAAATATAATA
6762244 AATAGAAATATAATA
1 AATAGAAATATAATA
6762259 ATAGTAGAAATATAA
1 A-A-TAGAAATATAA
6762274 GTAGATAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 15 0.56
16 1 0.04
17 11 0.41
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.24
Consensus pattern (15 bp):
AATAGAAATATAATA
Found at i:6762273 original size:29 final size:29
Alignment explanation
Indices: 6762241--6762357 Score: 76
Period size: 29 Copynumber: 4.0 Consensus size: 29
6762231 TAGAAATACA
*
6762241 ATAAATAGAAATATAATAATAGTAGAAAT
1 ATAAATAGAAATATAATAATAATAGAAAT
* * * * *
6762270 ATAAGTAGATAA-ATAAAAATTAGATAAAT
1 ATAAATAGA-AATATAATAATAATAGAAAT
* * * * * * *
6762299 AGT-AATAGTATTAGAATGACAAAATAAAT
1 A-TAAATAGAAATATAATAATAATAGAAAT
*
6762328 ATAAATAGAAATATAATAATAATAGTAAT
1 ATAAATAGAAATATAATAATAATAGAAAT
6762357 A
1 A
6762358 ATATATTAAA
Statistics
Matches: 61, Mismatches: 23, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
28 2 0.03
29 56 0.92
30 3 0.05
ACGTcount: A:0.61, C:0.01, G:0.10, T:0.28
Consensus pattern (29 bp):
ATAAATAGAAATATAATAATAATAGAAAT
Found at i:6763917 original size:46 final size:46
Alignment explanation
Indices: 6763865--6764092 Score: 350
Period size: 46 Copynumber: 5.0 Consensus size: 46
6763855 AGTGTGCTCT
*
6763865 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
6763911 CTGATATGAACTGTGTAAGACCATGGTTGAAAGATACCATGACAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
6763957 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
6764003 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
6764049 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
6764093 TCATGTCAAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:6771133 original size:12 final size:12
Alignment explanation
Indices: 6771116--6771148 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
6771106 TTCCCTGTAA
*
6771116 AATAGTAAAATT
1 AATAGTAAAAAT
6771128 AATAGTAAAAAT
1 AATAGTAAAAAT
6771140 AATAGTAAA
1 AATAGTAAA
6771149 GGGGAAGTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (12 bp):
AATAGTAAAAAT
Found at i:6772082 original size:10 final size:9
Alignment explanation
Indices: 6772067--6772122 Score: 58
Period size: 10 Copynumber: 5.7 Consensus size: 9
6772057 ATTCTAAAAG
6772067 ATAAATACAA
1 ATAAATA-AA
6772077 ATAAATAAAA
1 ATAAAT-AAA
*
6772087 ATAATTAAA
1 ATAAATAAA
6772096 GATAAATAAA
1 -ATAAATAAA
6772106 GATAAATGAAA
1 -ATAAAT-AAA
6772117 ATAAAT
1 ATAAAT
6772123 CCTAAAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
9 3 0.07
10 34 0.83
11 4 0.10
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (9 bp):
ATAAATAAA
Found at i:6772090 original size:20 final size:19
Alignment explanation
Indices: 6772061--6772122 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
6772051 AATGAAATTC
6772061 TAAAAGATAAATACAAATAAA
1 TAAAA-ATAAATA-AAATAAA
*
6772082 TAAAAATAATTAAAGATAAA
1 TAAAAATAAATAAA-ATAAA
*
6772102 TAAAGATAAATGAAAATAAA
1 TAAAAATAAAT-AAAATAAA
6772122 T
1 T
6772123 CCTAAAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 2 0.06
20 26 0.72
21 8 0.22
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (19 bp):
TAAAAATAAATAAAATAAA
Found at i:6772099 original size:30 final size:30
Alignment explanation
Indices: 6772063--6772120 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
6772053 TGAAATTCTA
6772063 AAAGATAAATACAA-ATAAATAAAAATAATT
1 AAAGATAAATA-AAGATAAATAAAAATAATT
*
6772093 AAAGATAAATAAAGATAAATGAAAATAA
1 AAAGATAAATAAAGATAAATAAAAATAA
6772121 ATCCTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.21
Consensus pattern (30 bp):
AAAGATAAATAAAGATAAATAAAAATAATT
Found at i:6779740 original size:21 final size:20
Alignment explanation
Indices: 6779689--6779740 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
6779679 AAATCCAAAT
* *
6779689 TAAAATACTAAAATTCAGGA
1 TAAAATACTGAAATTCAGAA
*
6779709 TAAAATTCTGAAATTCAGAA
1 TAAAATACTGAAATTCAGAA
6779729 TAAAAATACTGA
1 T-AAAATACTGA
6779741 TGTAGCATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.54, C:0.10, G:0.10, T:0.27
Consensus pattern (20 bp):
TAAAATACTGAAATTCAGAA
Found at i:6790578 original size:41 final size:39
Alignment explanation
Indices: 6790465--6790588 Score: 119
Period size: 41 Copynumber: 3.2 Consensus size: 39
6790455 GTACCCAATA
* *
6790465 CCTCATCGGATAATTCGAAGTAATAATTTGACACCCAGTG
1 CCTCATC-GATAATCCGAAGTAATAAATTGACACCCAGTG
* * * * *
6790505 TCTCATTGGCTAAACCGAAG---TAAATTGGCACCCAGTG
1 CCTCA-TCGATAATCCGAAGTAATAAATTGACACCCAGTG
6790542 CCTCATCGAATTAATCCGAAGTAATAAATTGACACCCAGTG
1 CCTCATCG-A-TAATCCGAAGTAATAAATTGACACCCAGTG
*
6790583 TCTCAT
1 CCTCAT
6790589 TAACTCGAAG
Statistics
Matches: 65, Mismatches: 13, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
36 2 0.03
37 19 0.29
38 9 0.14
40 13 0.20
41 22 0.34
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (39 bp):
CCTCATCGATAATCCGAAGTAATAAATTGACACCCAGTG
Found at i:6791528 original size:20 final size:20
Alignment explanation
Indices: 6791483--6791529 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
6791473 TTTCTCCTTT
* * *
6791483 TCTTTC-CTTTTTCTTTCTT
1 TCTTTCTCTGTTTCGTTCTA
*
6791502 TCCTTCTCTGTTTCGTTCTA
1 TCTTTCTCTGTTTCGTTCTA
6791522 TCTTTCTC
1 TCTTTCTC
6791530 ATTTTCTATT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.02, C:0.30, G:0.04, T:0.64
Consensus pattern (20 bp):
TCTTTCTCTGTTTCGTTCTA
Found at i:6791571 original size:5 final size:5
Alignment explanation
Indices: 6791563--6791635 Score: 139
Period size: 5 Copynumber: 14.8 Consensus size: 5
6791553 CTTTTATTAT
6791563 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
6791613 TATAA TATAA TATAA TAT-A TATA
1 TATAA TATAA TATAA TATAA TATA
6791636 GTTAAACATT
Statistics
Matches: 67, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.06
5 63 0.94
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:6797790 original size:40 final size:38
Alignment explanation
Indices: 6797725--6797852 Score: 157
Period size: 38 Copynumber: 3.3 Consensus size: 38
6797715 AAACCCAAAC
* * *
6797725 ATAACACCAGCACGAAGCCTACAGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCAGGA-TTT-AACTCGGAT
* *
6797765 ATAATACCAGCACTAGGCCTGCAGGATTTAACTCGGAT
1 ATAATACCAGCACGAAGCCTGCAGGATTTAACTCGGAT
* * *
6797803 ATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCAGGATTTAACTCGGAT
*
6797841 ATAATTCCAGCA
1 ATAATACCAGCA
6797853 TATAGCCTGC
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
38 51 0.67
39 3 0.04
40 22 0.29
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCAGGATTTAACTCGGAT
Found at i:6797860 original size:38 final size:38
Alignment explanation
Indices: 6797762--6797881 Score: 136
Period size: 38 Copynumber: 3.1 Consensus size: 38
6797752 TTTAAACTCA
* * * *
6797762 GATATAATACCAGCACTAGGCCTGCAGGATTTAACTCG
1 GATATAATTCCAGCACTAAGCCTGCGGGATTTAACCCG
*
6797800 GATAT-ATTACCAGCACGAAGCCTGCGGGATTTAACCCG
1 GATATAATT-CCAGCACTAAGCCTGCGGGATTTAACCCG
*
6797838 GATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATTCCAGCACTA-AGCCTGCGGG-ATTTAA-CCCG
6797878 GATA
1 GATA
6797882 CACATCAATA
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
37 3 0.04
38 51 0.73
39 8 0.11
40 8 0.11
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (38 bp):
GATATAATTCCAGCACTAAGCCTGCGGGATTTAACCCG
Found at i:6797880 original size:78 final size:78
Alignment explanation
Indices: 6797730--6797881 Score: 175
Period size: 76 Copynumber: 1.9 Consensus size: 78
6797720 CAAACATAAC
* *
6797730 ACCAGCACGAAGCCTACAGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGCAGGATTTA
1 ACCAGCACGAAGCCTACAGGACTTTAAACCCAGATATAATACCAGCACTAAGCCTGCAGGATTTA
*
6797795 ACTCGGATATATT
66 ACCCGGATATATT
* * * * * *
6797808 ACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATTCCAGCA-TATAGCCTGCGGGTCTT
1 ACCAGCACGAAGCCTACAGGACTTTAAACCCAGATATAATACCAGCACTA-AGCCTGCAGG-ATT
6797870 TAAGCCCGGATA
64 TAA-CCCGGATA
6797882 CACATCAATA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
75 2 0.03
76 26 0.42
77 8 0.13
78 26 0.42
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (78 bp):
ACCAGCACGAAGCCTACAGGACTTTAAACCCAGATATAATACCAGCACTAAGCCTGCAGGATTTA
ACCCGGATATATT
Found at i:6800929 original size:18 final size:18
Alignment explanation
Indices: 6800901--6800944 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
6800891 GCTTATTCTT
6800901 TTATT-TATTATAATA-A
1 TTATTATATTATAATATA
6800917 TATATTATATTATAATATA
1 T-TATTATATTATAATATA
6800936 TTATTATAT
1 TTATTATAT
6800945 AATTAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.04
17 4 0.16
18 18 0.72
19 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTATTATATTATAATATA
Found at i:6800935 original size:10 final size:10
Alignment explanation
Indices: 6800906--6800954 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
6800896 TTCTTTTATT
6800906 TATTATAATA
1 TATTATAATA
*
6800916 -A-TATATTA
1 TATTATAATA
6800924 TATTATAATA
1 TATTATAATA
*
6800934 TATTATTATA
1 TATTATAATA
6800944 TAATTA-AATA
1 T-ATTATAATA
6800954 T
1 T
6800955 TAAGTATGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
8 6 0.19
9 2 0.06
10 20 0.62
11 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (10 bp):
TATTATAATA
Found at i:6800945 original size:15 final size:15
Alignment explanation
Indices: 6800905--6800947 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
6800895 ATTCTTTTAT
6800905 TTATTATAATAATATA
1 TTATTAT-ATAATATA
6800921 TTA-TATTATAATATA
1 TTATTA-TATAATATA
6800936 TTATTATATAAT
1 TTATTATATAAT
6800948 TAAATATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 19 0.76
16 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTATTATATAATATA
Found at i:6806768 original size:14 final size:14
Alignment explanation
Indices: 6806749--6806778 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6806739 TCTACAATTG
*
6806749 TTAATTTAGTGTAT
1 TTAATTTAGTATAT
6806763 TTAATTTAGTATAT
1 TTAATTTAGTATAT
6806777 TT
1 TT
6806779 TTAGACTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (14 bp):
TTAATTTAGTATAT
Found at i:6813127 original size:69 final size:70
Alignment explanation
Indices: 6813017--6813150 Score: 216
Period size: 69 Copynumber: 1.9 Consensus size: 70
6813007 TAGTTTATTA
* * * * *
6813017 CTAATTAATTTGCTGCTGTAATGCTATAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
6813082 CTTAG
66 CTTAG
6813087 CTAATTAATATGCTACTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
1 CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
6813151 TTATGTGCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 37 0.63
70 22 0.37
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
CTTAG
Found at i:6814273 original size:45 final size:45
Alignment explanation
Indices: 6814211--6814472 Score: 347
Period size: 45 Copynumber: 5.9 Consensus size: 45
6814201 TTGATTTGAT
*
6814211 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
6814256 TATTCGGGCCTTTGAGCCTAGCAGGCAATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
6814301 TATTTGAGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
6814346 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
6814391 TATTCGGG-ATTTCGAGCCTAGTAGGCTATAATGCCGGTGA-A-AA
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * * *
6814434 GATATCGGGCC-TCGAGCCTAGCAGGCGA-AATGCTGGTGA
1 TAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
6814473 ATGAATTCGG
Statistics
Matches: 196, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
42 10 0.05
43 16 0.08
44 11 0.06
45 159 0.81
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:6817377 original size:58 final size:55
Alignment explanation
Indices: 6817315--6817450 Score: 150
Period size: 55 Copynumber: 2.4 Consensus size: 55
6817305 TTAATTCATA
* * *
6817315 TAATAACAATTATATTAAGAATTTTATTAAA-TTATATATTATTTTGTTAAATTATATT
1 TAATAATAATTATATTAA-AATTTGATTAAATTTAT-TA-T-TTTTATTAAATTATATT
* * * *
6817373 TAATAATAATTATGTTAAAATATGGTTAAATTTATTATTTTTATTAAATTATTTT
1 TAATAATAATTATATTAAAATTTGATTAAATTTATTATTTTTATTAAATTATATT
6817428 TAATAATAATCT-TATTAAAATTT
1 TAATAATAAT-TATATTAAAATTT
6817451 AATAACAATA
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
55 34 0.51
56 2 0.03
57 11 0.16
58 20 0.30
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (55 bp):
TAATAATAATTATATTAAAATTTGATTAAATTTATTATTTTTATTAAATTATATT
Found at i:6830473 original size:15 final size:15
Alignment explanation
Indices: 6830453--6830482 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6830443 GAGTCCTAAG
*
6830453 AAAATAGAATTAGAA
1 AAAATAGAAATAGAA
6830468 AAAATAGAAATAGAA
1 AAAATAGAAATAGAA
6830483 TTTTTAGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (15 bp):
AAAATAGAAATAGAA
Found at i:6831416 original size:30 final size:30
Alignment explanation
Indices: 6831380--6831438 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
6831370 TGCGGAAGAT
6831380 AATTTTTATTAAAAGAAAAGGATGATTCTA
1 AATTTTTATTAAAAGAAAAGGATGATTCTA
6831410 AATTTTTATTAAAAGAAAAGGATGATTCT
1 AATTTTTATTAAAAGAAAAGGATGATTCT
6831439 TACAAAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (30 bp):
AATTTTTATTAAAAGAAAAGGATGATTCTA
Found at i:6835435 original size:46 final size:50
Alignment explanation
Indices: 6835375--6835540 Score: 137
Period size: 52 Copynumber: 3.3 Consensus size: 50
6835365 TAGCCTTGCC
* * * *
6835375 ATGGTCTTACACGGATCACA-TAT-CAT-ACA-GATGCTATATCCCAGAT
1 ATGGTCTTATACGGATCACATTATACATCACACAATGCCATAACCCAGAT
*
6835421 ATGGTCTTATACGGAATCACATTATCACATCACACCAATGCCATAACCCAGCT
1 ATGGTCTTATACGG-ATCACATTAT-ACATCACA-CAATGCCATAACCCAGAT
* * * * *
6835474 ATGGTCTTATACGGA-AATATGTATCACATTTCAC-CAATGCCATAGCTCAGCT
1 ATGGTCTTATACGGATCACAT-TAT-ACA--TCACACAATGCCATAACCCAGAT
6835526 ATGGTCTTATACGGA
1 ATGGTCTTATACGGA
6835541 AGCACATATT
Statistics
Matches: 101, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
46 13 0.13
47 6 0.06
48 3 0.03
50 3 0.03
51 6 0.06
52 39 0.39
53 27 0.27
54 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (50 bp):
ATGGTCTTATACGGATCACATTATACATCACACAATGCCATAACCCAGAT
Found at i:6835525 original size:52 final size:52
Alignment explanation
Indices: 6835405--6835555 Score: 180
Period size: 52 Copynumber: 2.9 Consensus size: 52
6835395 TATCATACAG
* * *
6835405 ATGCTATATCCCAGATATGGTCTTATACGGAATCACATTATCACATCACACCA
1 ATGCCATAACCCAGCTATGGTCTTATACGGAA-CACATTATCACATCACACCA
* **
6835458 ATGCCATAACCCAGCTATGGTCTTATACGGAA-ATATGTATCACATTTCACCA
1 ATGCCATAACCCAGCTATGGTCTTATACGGAACACAT-TATCACATCACACCA
* * *
6835510 ATGCCATAGCTCAGCTATGGTCTTATACGGAAGCACA-TATTACATC
1 ATGCCATAACCCAGCTATGGTCTTATACGGAA-CACATTATCACATC
6835556 TTTTCCGTCA
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
51 3 0.04
52 50 0.60
53 29 0.35
54 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.28
Consensus pattern (52 bp):
ATGCCATAACCCAGCTATGGTCTTATACGGAACACATTATCACATCACACCA
Found at i:6835697 original size:24 final size:26
Alignment explanation
Indices: 6835664--6835713 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
6835654 AATGTTCAAT
6835664 TACATAGCCCAA-ATTCAAAACCCTA
1 TACATAGCCCAACATTCAAAACCCTA
*
6835689 TACA-AGCCCAACATTCAAGACCCTA
1 TACATAGCCCAACATTCAAAACCCTA
6835714 AAACCAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.42, C:0.34, G:0.06, T:0.18
Consensus pattern (26 bp):
TACATAGCCCAACATTCAAAACCCTA
Found at i:6838081 original size:131 final size:130
Alignment explanation
Indices: 6837885--6838217 Score: 433
Period size: 131 Copynumber: 2.6 Consensus size: 130
6837875 TAATTATTCA
6837885 TTTAAAAATTCTTTTAAAAGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTC--TTAAAAGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCCTATC
* * * *
6837950 GTGCTGGGTTACAATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATG-
64 GTGCTGGGTTACAATTACCCGTTTGTTCAAAATAATCAAATATTCCTTTAGAATTTCACTCATGT
6838014 TC
129 TC
* *
6838016 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCTTATC
1 TTTAAAAATTCTT-AAAA-GAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCCTATC
* * * *
6838081 GTTCTGGGTTGCAATTACCCGTTTGTTCAAAATAATCAAATATTCCTTTATAATTTCATTCATGT
64 GTGCTGGGTTACAATTACCCGTTTGTTCAAAATAATCAAATATTCCTTTAGAATTTCACTCATGT
6838146 TC
129 TC
* * * * * **
6838148 TCT--GAATTC-TAAAATAAGGCAATGTTCGATGTCTAGAAATTCGGGGAATCGTGCCCTA-CTG
1 TTTAAAAATTCTTAAAAGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCCTATC-G
6838209 TGCTGGGTT
65 TGCTGGGTT
6838218 TCGGTTTTTT
Statistics
Matches: 178, Mismatches: 20, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
126 1 0.01
127 46 0.26
128 4 0.02
129 3 0.02
130 9 0.05
131 111 0.62
132 4 0.02
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (130 bp):
TTTAAAAATTCTTAAAAGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCCTATCGT
GCTGGGTTACAATTACCCGTTTGTTCAAAATAATCAAATATTCCTTTAGAATTTCACTCATGTTC
Found at i:6839716 original size:19 final size:19
Alignment explanation
Indices: 6839692--6839737 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
6839682 CTTTCTTTCC
6839692 TTTGCATT-CATCCCATGCA
1 TTTGCATTGCATCCCAT-CA
**
6839711 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATCCCATCA
6839730 TTTGCATT
1 TTTGCATT
6839738 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATCCCATCA
Found at i:6843683 original size:64 final size:64
Alignment explanation
Indices: 6843566--6843689 Score: 194
Period size: 64 Copynumber: 1.9 Consensus size: 64
6843556 ATATTCATAA
* *
6843566 CACATCTAGTTAGGAGCATTTAATTTATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGCAT
* * * *
6843630 CACATCTAGTTAGGAGCATTTAATTCATTTTGATCATAGCATCTTAGTCATTTGGCATAA
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATCATTTGACATAA
6843690 ACATAGGCAT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGCAT
Found at i:6844093 original size:88 final size:87
Alignment explanation
Indices: 6843799--6844551 Score: 669
Period size: 89 Copynumber: 8.6 Consensus size: 87
6843789 GCAAACCCTG
* * * *
6843799 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCTTAAACAATAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAACAGTAGTGGAG
*
6843864 CAAATCGAAGAAGCAGGCCTTA
66 CAAATCGAAGAAGCAAGCCTTA
* * * * * *** *
6843886 ACTCCTTAAGTGGTAGGGTGACAGGCTGAAGATTGCAGATCTTGTTTCCTTGAAGTTGCAGTGGA
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCT-AAACAGTAGTGGA
* * * * **
6843951 ACAGATCAAAGATGGTGAGCCTTA
65 GCAAATCGAAGA-AGCAAGCCTTA
* * *
6843975 ACCCCCTAAGTGGTAGGGTAACAGGTTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTAGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAACAGTAGTGGAG
6844040 CAAATCGAAGAAGCAAGCCTTAA
66 CAAATCGAAGAAGCAAGCCTT-A
* * * * * ***
6844063 ACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATTTTGTTTTCCTGAAGTTGTAGTGGA
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCT-AAACAGTAGTGGA
* * * **
6844128 ACAGATCAAAGACAGTGAGCCTTA
65 GCAAATCGAAGA-AGCAAGCCTTA
* *** * *
6844152 A-CCCCTAAGTGGTAGAGTAACAGGCTGAAGATCATAGATC-T-TATCCTTAAACAGTAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAACAGTAGTGGAG
*
6844214 TAAATCGAAGAAGCAAGCCTTA
66 CAAATCGAAGAAGCAAGCCTTA
* * *
6844236 ACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGCTA-CAGTGG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCT-AAAC-AGTAGTGG
** * * * **
6844300 AATAGATCAAAGACGGTGAGCCTTA
64 AGCAAATCGAAGA-AGCAAGCCTTA
* * * * * *
6844325 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTGTAGATATTATCTCCTTAAATAGTAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAACAGTAGTGGAG
6844390 CAAATCGAAGAAGCAAGCCTTA
66 CAAATCGAAGAAGCAAGCCTTA
* * * * * *
6844412 ACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCA-AGTCTTGTCTCCCTGAAATTA-CAATG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGA-TCTTGTCTCCCT-AAA-CAGTAGTG
* * * *
6844475 GAACAGATTGAAGATG-ATGAGCCTTA
63 GAGCAAATCGAAGAAGCA--AGCCTTA
* *
6844501 ACCCCCTAAGTAGTAGGGTAACAGGCTGAA-ATTTGCA-AGTCTTATCTCCCT
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGA-TTGCAGA-TCTTGTCTCCCT
6844552 GAAGTTGCAG
Statistics
Matches: 527, Mismatches: 121, Indels: 34
0.77 0.18 0.05
Matches are distributed among these distances:
84 10 0.02
85 52 0.10
86 6 0.01
87 109 0.21
88 164 0.31
89 178 0.34
90 8 0.02
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (87 bp):
ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAACAGTAGTGGAG
CAAATCGAAGAAGCAAGCCTTA
Found at i:6844159 original size:176 final size:176
Alignment explanation
Indices: 6843799--6844530 Score: 1047
Period size: 176 Copynumber: 4.2 Consensus size: 176
6843789 GCAAACCCTG
* *
6843799 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCTTAAACAATAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCTTAAACAGTAGTGGAG
* * * *
6843864 CAAATCGAAGAAGCAGGCCTTAACTCCTTAAGTGGTAGGGTGACAGGCTGAAGATTGCAGATCTT
66 CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATCTT
* * * *
6843929 GTTTCCTTGAAGTTGCAGTGGAACAGATCAAAGATGGTGAGCCTTA
131 GTCTCCCTGAAGTTACAGTGGAACAGATCAAAGACGGTGAGCCTTA
* * *
6843975 ACCCCCTAAGTGGTAGGGTAACAGGTTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTAGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCTTAAACAGTAGTGGAG
*
6844040 CAAATCGAAGAAGCAAGCCTTAAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATTT
66 CAAATCGAAGAAGCAAGCCTT-AACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATCT
* * ** *
6844105 TGTTTTCCTGAAGTTGTAGTGGAACAGATCAAAGACAGTGAGCCTTA
130 TGTCTCCCTGAAGTTACAGTGGAACAGATCAAAGACGGTGAGCCTTA
* ** *
6844152 A-CCCCTAAGTGGTAGAGTAACAGGCTGAAGATCATAGATC-T-TATCCTTAAACAGTAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCTTAAACAGTAGTGGAG
* *
6844214 TAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTT
66 CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATCTT
* *
6844279 GTCTCCCTGAAGCTACAGTGGAATAGATCAAAGACGGTGAGCCTTA
131 GTCTCCCTGAAGTTACAGTGGAACAGATCAAAGACGGTGAGCCTTA
* * * *
6844325 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTGTAGATATTATCTCCTTAAATAGTAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCTTAAACAGTAGTGGAG
* * * * *
6844390 CAAATCGAAGAAGCAAGCCTTAACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAGTCTT
66 CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATCTT
* * ** * *
6844455 GTCTCCCTGAAATTACAATGGAACAGATTGAAGATGATGAGCCTTA
131 GTCTCCCTGAAGTTACAGTGGAACAGATCAAAGACGGTGAGCCTTA
*
6844501 ACCCCCTAAGTAGTAGGGTAACAGGCTGAA
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAA
6844531 ATTTGCAAGT
Statistics
Matches: 497, Mismatches: 55, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
173 82 0.16
174 72 0.14
175 2 0.00
176 259 0.52
177 82 0.16
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (176 bp):
ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCTTAAACAGTAGTGGAG
CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATCTT
GTCTCCCTGAAGTTACAGTGGAACAGATCAAAGACGGTGAGCCTTA
Found at i:6844269 original size:261 final size:261
Alignment explanation
Indices: 6843799--6844444 Score: 618
Period size: 261 Copynumber: 2.5 Consensus size: 261
6843789 GCAAACCCTG
* * * * * * * * * *
6843799 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCTTAAACAATAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTGCAAATATTATCTCCTGAAATAGTAGTGGAA
* * * * * * * * ***
6843864 CAAATCGAAGAAGCAGGCCTTAACTCCTTAAGTGGTAGGGTGACAGGCTGAAGATTGCAGATCTT
66 CAAATCAAAGAAGCAAGCCTTAACCCCCTAAATGGTAAGATAACAGGCTGAAGATCATAGATC-T
* *** * ** * * * **
6843929 GTTTCCTTGAAGTTGCAGTGGAACAGATCAAAGATGGTGAGCCTTAACCCCCTAAGTGGTAGGGT
130 -TATCCTT-AAACAGTAGTGGAGTAAATCGAAGA-AGCAAGCCTTAACCCCCTAAGTGGTAGGGT
* * * * *
6843994 AACAGGTTGAAGATTGTAGATCTTGTCTCCCT-AAAC-AGTAGTAGAGCAAATCGAAGA-AGCAA
192 AACAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAACTA-CAGTAGAACAAATCAAAGACAGCAA
6844056 GCCTTAA
256 GCCTT-A
* * * * * * *
6844063 ACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATTTTGTTTTCCTGAAGTTGTAGTGGA
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTGCAAATATT-ATCTCCTGAAATAGTAGTGGA
* ** *
6844128 ACAGATCAAAGACAGTGAGCCTTAA-CCCCTAAGTGGT-AGAGTAACAGGCTGAAGATCATAGAT
65 ACAAATCAAAGA-AGCAAGCCTTAACCCCCTAAATGGTAAGA-TAACAGGCTGAAGATCATAGAT
*
6844191 CTTATCCTTAAACAGTAGTGGAGTAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTA
128 CTTATCCTTAAACAGTAGTGGAGTAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTGGTAGGGTA
* * * * * **
6844256 ACAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGCTACAGTGGAATAGATCAAAGACGGTGAGC
193 ACAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAACTACAGTAGAACAAATCAAAGACAGCAAGC
6844321 CTTA
258 CTTA
* * * *
6844325 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTGTAGATATTATCTCCTTAAATAGTAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTGCAAATATTATCTCCTGAAATAGTAGTGGAA
*
6844390 CAAATCGAAGAAGCAAGCCTTAACCCCCTAAATGGTAAGATAACAGGCTGAAGAT
66 CAAATCAAAGAAGCAAGCCTTAACCCCCTAAATGGTAAGATAACAGGCTGAAGAT
6844445 TGCAAGTCTT
Statistics
Matches: 307, Mismatches: 67, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
260 10 0.03
261 107 0.35
262 75 0.24
263 14 0.05
264 40 0.13
265 52 0.17
266 9 0.03
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (261 bp):
ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTGCAAATATTATCTCCTGAAATAGTAGTGGAA
CAAATCAAAGAAGCAAGCCTTAACCCCCTAAATGGTAAGATAACAGGCTGAAGATCATAGATCTT
ATCCTTAAACAGTAGTGGAGTAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTGGTAGGGTAACA
GGCTGAAGATTGCAGATCTTGTCTCCCTGAAACTACAGTAGAACAAATCAAAGACAGCAAGCCTT
A
Found at i:6844509 original size:350 final size:353
Alignment explanation
Indices: 6843799--6844530 Score: 1078
Period size: 350 Copynumber: 2.1 Consensus size: 353
6843789 GCAAACCCTG
** *
6843799 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCTTAAACAATAGTGGAG
1 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATCATAGATCTTGTATCCTTAAACAATAGTGGAG
* * *
6843864 CAAATCGAAGAAGCAGGCCTTAACTCCTTAAGTGGTAGGGTGACAGGCTGAAGATTGCAGATCTT
66 CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTT
* * * * *
6843929 GTTTCCTTGAAGTTGCAGTGGAACAGATCAAAGATGGTGAGCCTTAACCCCCTAAGTGGTAGGGT
131 GTCTCCCTGAAGCTACAGTGGAACAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTGGTAGGGT
* * * *
6843994 AACAGGTTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTAGAGCAAATCGAAGAAGCAAGCC
196 AACAGGCTGAAGAGTGTAGATATTATCTCCCTAAACAGTAGTAGAGCAAATCGAAGAAGCAAGCC
* * * * * * * * ** *
6844059 TTAAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATTTTGTTTTCCTGAAGTTGTAG
261 TTAAACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAATCTTGTCTCCCTGAAATTACAA
6844124 TGGAACAGATCAAAGACAGTGAGCCTTA
326 TGGAACAGATCAAAGACAGTGAGCCTTA
* * *
6844152 A-CCCCTAAGTGGTAGAGTAACAGGCTGAAGATCATAGATC-T-TATCCTTAAACAGTAGTGGAG
1 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATCATAGATCTTGTATCCTTAAACAATAGTGGAG
*
6844214 TAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTT
66 CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTT
*
6844279 GTCTCCCTGAAGCTACAGTGGAATAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTGGTAGGGT
131 GTCTCCCTGAAGCTACAGTGGAACAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTGGTAGGGT
* * *
6844344 AACAGGCTGAAGAGTGTAGATATTATCTCCTTAAATAGTAGTGGAGCAAATCGAAGAAGCAAGCC
196 AACAGGCTGAAGAGTGTAGATATTATCTCCCTAAACAGTAGTAGAGCAAATCGAAGAAGCAAGCC
*
6844409 TT-AACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAGTCTTGTCTCCCTGAAATTACAA
261 TTAAACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAATCTTGTCTCCCTGAAATTACAA
** *
6844473 TGGAACAGATTGAAGA-TGATGAGCCTTA
326 TGGAACAGATCAAAGACAG-TGAGCCTTA
6844501 ACCCCCTAAGTAGTAGGGTAACAGGCTGAA
1 ACCCCCTAAGTAGTAGGGTAACAGGCTGAA
6844531 ATTTGCAAGT
Statistics
Matches: 337, Mismatches: 40, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
348 1 0.00
349 74 0.22
350 225 0.67
351 1 0.00
352 35 0.10
353 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (353 bp):
ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATCATAGATCTTGTATCCTTAAACAATAGTGGAG
CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTT
GTCTCCCTGAAGCTACAGTGGAACAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTGGTAGGGT
AACAGGCTGAAGAGTGTAGATATTATCTCCCTAAACAGTAGTAGAGCAAATCGAAGAAGCAAGCC
TTAAACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAATCTTGTCTCCCTGAAATTACAA
TGGAACAGATCAAAGACAGTGAGCCTTA
Found at i:6844589 original size:89 final size:90
Alignment explanation
Indices: 6843773--6844554 Score: 621
Period size: 88 Copynumber: 8.9 Consensus size: 90
6843763 AATAGTAGCA
* * * * * *
6843773 GAACAGATAGAAGAAAGCA-AACCCTGACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTG-TA
1 GAACAGATCGAAG-AAGCAGAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAA
* * ** *
6843836 GATCTTGTCT-CCTTAAACAATAGTG
65 GATCTTATCTCCCTGAAATTACAGTG
* * * * *
6843861 GAGCAAATCGAAGAAGCAG-GCCTTAACTCCTTAAGTGGTAGGGTGACAGGCTGAAGATTGC-AG
1 GAACAGATCGAAGAAGCAGAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAG
* * * * *
6843924 ATCTTGTTTCCTTGAAGTTGCAGTG
66 ATCTTATCTCCCTGAAATTACAGTG
* * ** * *
6843949 GAACAGATCAAAGATGGTGAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGTTGAAGATTG-TAG
1 GAACAGATCGAAGAAGCAGAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAG
* * * *
6844013 ATCTTGTCTCCCT-AAA-CAGTAGTA
66 ATCTTATCTCCCTGAAATTA-CAGTG
* * *
6844037 GAGCAAATCGAAGAAGCA-AGCCTTAAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAA
1 GAACAGATCGAAGAAGCAGAGCCTT-AACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAA
* * * * * **
6844101 -ATTTTGTTTTCCTGAAGTTGTAGTG
65 GATCTTATCTCCCTGAAATTACAGTG
* * *
6844126 GAACAGATCAAAGACAG-TGAGCCTTAA-CCCCTAAGTGGTAGAGTAACAGGCTGAAGA-T-CAT
1 GAACAGATCGAAGA-AGCAGAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCA-
* * *
6844187 AGATCTTA--T-CCTTAAA-CAGTAGTG
64 AGATCTTATCTCCCTGAAATTA-CAGTG
** * *
6844211 GAGTAAATCGAAGAAGCA-AGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGC-AG
1 GAACAGATCGAAGAAGCAGAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAG
* **
6844274 ATCTTGTCTCCCTGAAGCTACAGTG
66 ATCTTATCTCCCTGAAATTACAGTG
* * * ** * *
6844299 GAATAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTG-TAG
1 GAACAGATCGAAGAAGCAGAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAG
* * *
6844363 ATATTATCT-CCTTAAA-TAGTAGTG
66 ATCTTATCTCCCTGAAATTA-CAGTG
* * * * *
6844387 GAGCAAATCGAAGAAGCA-AGCCTTAACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAG
1 GAACAGATCGAAGAAGCAGAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAG
* *
6844451 -TCTTGTCTCCCTGAAATTACAATG
66 ATCTTATCTCCCTGAAATTACAGTG
* * *
6844475 GAACAGATTGAAGATG-ATGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAA-ATTTGCA
1 GAACAGATCGAAGAAGCA-GAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGCTGAAGA-TTGCA
6844538 AG-TCTTATCTCCCTGAA
64 AGATCTTATCTCCCTGAA
6844555 GTTGCAGCGG
Statistics
Matches: 548, Mismatches: 114, Indels: 63
0.76 0.16 0.09
Matches are distributed among these distances:
84 10 0.02
85 55 0.10
86 4 0.01
87 106 0.19
88 189 0.34
89 176 0.32
90 8 0.01
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.24
Consensus pattern (90 bp):
GAACAGATCGAAGAAGCAGAGCCTTAACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAG
ATCTTATCTCCCTGAAATTACAGTG
Found at i:6844962 original size:24 final size:26
Alignment explanation
Indices: 6844929--6844978 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
6844919 AATGTCCAAT
6844929 TACATAGCCCAA-ATTCAAAACCCTA
1 TACATAGCCCAATATTCAAAACCCTA
*
6844954 TACA-AGCCCAATATTCAAGACCCTA
1 TACATAGCCCAATATTCAAAACCCTA
6844979 AAACCAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.42, C:0.32, G:0.06, T:0.20
Consensus pattern (26 bp):
TACATAGCCCAATATTCAAAACCCTA
Found at i:6847417 original size:132 final size:131
Alignment explanation
Indices: 6847206--6847467 Score: 454
Period size: 132 Copynumber: 2.0 Consensus size: 131
6847196 TAATTATTCA
* *
6847206 TTTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAAACGTGCCCTATC
6847271 GTACTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTT-GAAATTTCACTCATG
66 GTACTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAG-AATTTCACTCATG
6847335 TC
130 TC
*
6847337 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTTGGCCATTCGGGGAAACGTGCCCTAT
1 TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATG-TTTGGCCATTCGGGGAAACGTGCCCTAT
* *
6847402 CGTTCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATG
65 CGTACTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATG
6847467 T
130 T
6847468 TCTCTGAATT
Statistics
Matches: 124, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
131 34 0.27
132 89 0.72
133 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAAACGTGCCCTATC
GTACTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
C
Found at i:6850523 original size:16 final size:16
Alignment explanation
Indices: 6850502--6850543 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
6850492 CGGCACAAGT
6850502 CGAAAAGCCGAAATGC
1 CGAAAAGCCGAAATGC
**
6850518 CGAAAAGCTTAAATGC
1 CGAAAAGCCGAAATGC
6850534 CGAAAAGCCG
1 CGAAAAGCCG
6850544 GTATTTTGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.43, C:0.24, G:0.24, T:0.10
Consensus pattern (16 bp):
CGAAAAGCCGAAATGC
Found at i:6850973 original size:27 final size:27
Alignment explanation
Indices: 6850933--6851073 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
6850923 AGGAAGCGTC
*
6850933 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
6850960 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
6850986 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
6851014 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
6851041 CTGGCGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
6851068 CTGGTG
1 CTGGTG
6851074 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 7, Indels: 14
0.83 0.06 0.12
Matches are distributed among these distances:
26 11 0.11
27 85 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:6851012 original size:54 final size:54
Alignment explanation
Indices: 6850930--6851073 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
6850920 TGGAGGAAGC
6850930 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
6850984 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
6851038 GTTCTGGCGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
6851074 ACTTCGTCAC
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 6 0.07
54 80 0.93
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:6851085 original size:81 final size:80
Alignment explanation
Indices: 6850933--6851091 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 80
6850923 AGGAAGCGTC
* *
6850933 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGCGGCTCTGCCACATATATCTGTCCTGGTGACTAT
6850998 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
6851014 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGCGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGCGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
6851077 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
6851092 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
80 17 0.25
81 52 0.75
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGCGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:6860967 original size:17 final size:16
Alignment explanation
Indices: 6860946--6860998 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 16
6860936 AAATATATGA
6860946 AAAAATTAAAAAATCTTT
1 AAAAA-TAAAAAAT-TTT
6860964 AAAAATAAAAATATTTT
1 AAAAATAAAAA-ATTTT
6860981 AAAAATATAAAAATTTT
1 AAAAATA-AAAAATTTT
6860998 A
1 A
6860999 GACCGAACTG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
17 22 0.67
18 11 0.33
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAAATAAAAAATTTT
Found at i:6860967 original size:18 final size:18
Alignment explanation
Indices: 6860928--6860994 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 18
6860918 TATTTTTATA
**
6860928 AAAAATT-AAAATATATGA
1 AAAAATTAAAAATAT-TTT
6860946 AAAAATTAAAAA-ATCTTT
1 AAAAATTAAAAATAT-TTT
6860964 AAAAA-TAAAAATATTTT
1 AAAAATTAAAAATATTTT
6860981 AAAAATATAAAAAT
1 AAAAAT-TAAAAAT
6860995 TTTAGACCGA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
17 14 0.33
18 17 0.40
19 11 0.26
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (18 bp):
AAAAATTAAAAATATTTT
Found at i:6875534 original size:23 final size:22
Alignment explanation
Indices: 6875486--6875539 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
6875476 TTTTTGCCGA
*
6875486 AATTTTTTACCCCTATAAGTCG
1 AATTTTTTCCCCCTATAAGTCG
*
6875508 -ATTTTTTCCTCCCTATTAGTCG
1 AATTTTTTCC-CCCTATAAGTCG
6875530 AATTTTTTCC
1 AATTTTTTCC
6875540 ATGTATTTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 8 0.29
22 11 0.39
23 9 0.32
ACGTcount: A:0.20, C:0.24, G:0.07, T:0.48
Consensus pattern (22 bp):
AATTTTTTCCCCCTATAAGTCG
Found at i:6875731 original size:24 final size:23
Alignment explanation
Indices: 6875704--6875757 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
6875694 ATTTTTCCCC
* *
6875704 AATTCAACTTTTTTTTGTCTCTAT
1 AATTCAAC-TTTGTTTGTCCCTAT
**
6875728 AATTTGA-TTTGTTTGTCCCTAT
1 AATTCAACTTTGTTTGTCCCTAT
6875750 AATTCAAC
1 AATTCAAC
6875758 CCTCTGTAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
22 18 0.78
24 5 0.22
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.52
Consensus pattern (23 bp):
AATTCAACTTTGTTTGTCCCTAT
Found at i:6886683 original size:96 final size:96
Alignment explanation
Indices: 6886532--6886706 Score: 260
Period size: 96 Copynumber: 1.8 Consensus size: 96
6886522 GTTATCGATG
* * * * *
6886532 GGAATGATCAAGCAGATATGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAAG
1 GGAACGATCAAGCAGACAAGGAGCCCAAAAAGCTTAGTTCGAGCAAGGGAAAAGCCGAAGCCAAG
6886597 AGGGCAAAGAGGAGCAAGTCTGTCATCGAAA
66 AGGGCAAAGAGGAGCAAGTCTGTCATCGAAA
* * **
6886628 GGAACGATGAAGCAGACAAGGAGCTCAAAAAGCTTAGTTCGAGCAAGGTTAAAGCCGAAGCCAAG
1 GGAACGATCAAGCAGACAAGGAGCCCAAAAAGCTTAGTTCGAGCAAGGGAAAAGCCGAAGCCAAG
*
6886693 AGGGCTAAGAGGAG
66 AGGGCAAAGAGGAG
6886707 TAAAAAGAAG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 69 1.00
ACGTcount: A:0.38, C:0.17, G:0.33, T:0.12
Consensus pattern (96 bp):
GGAACGATCAAGCAGACAAGGAGCCCAAAAAGCTTAGTTCGAGCAAGGGAAAAGCCGAAGCCAAG
AGGGCAAAGAGGAGCAAGTCTGTCATCGAAA
Found at i:6888342 original size:22 final size:22
Alignment explanation
Indices: 6888311--6888356 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
6888301 CTTGATTATG
*
6888311 CTGTCTCTAGTACTGACATTCT
1 CTGTCCCTAGTACTGACATTCT
*
6888333 CTGTCCCTAGTATTGACATTCT
1 CTGTCCCTAGTACTGACATTCT
6888355 CT
1 CT
6888357 ATGAACTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.17, C:0.28, G:0.13, T:0.41
Consensus pattern (22 bp):
CTGTCCCTAGTACTGACATTCT
Found at i:6892073 original size:137 final size:138
Alignment explanation
Indices: 6891849--6892147 Score: 327
Period size: 137 Copynumber: 2.2 Consensus size: 138
6891839 AAGGCTGTGG
* * * * *
6891849 TTTTTATCCTATAATCCTTAGTAT--CAGCTGGGAGTTTTGCTCTCGCTAATTACGTTGGAGGCT
1 TTTTTATCCTATAAGCCTTAATATGATAGTTGGGAGTTTTGCTCTCGCTAACTACGTTGGAGGCT
* * * * * * * *
6891912 ACGGTTTTTATCTTGCAAGTCTTAATATGACAGCT-GAGAGCTTTACTCTCGCTAATTGTGTTAG
66 ACAGTATTTATCCTACAAGCCTTAATATGAAAGCTAG-GAGCTTTACTCTCACTAACTGTGTTAG
6891976 AGACTGCAA
130 AGACTGCAA
* * * *
6891985 TTTTTATCTTA-AAGCTTTAATATGATAGTTGGGAGTTTTGCTCTTGCTAACTATGTTGGAGGCT
1 TTTTTATCCTATAAGCCTTAATATGATAGTTGGGAGTTTTGCTCTCGCTAACTACGTTGGAGGCT
* * * * *
6892049 GCAGTATTTATCCTACGAGCCTTAATATGAAAGCTAGGAGCTTTGCTCTTACTAACTGTGTTGGA
66 ACAGTATTTATCCTACAAGCCTTAATATGAAAGCTAGGAGCTTTACTCTCACTAACTGTGTTAGA
* **
6892114 GGCTGCGG
131 GACTGCAA
*
6892122 TTTTTATCCTATGAGCCTTAATATGA
1 TTTTTATCCTATAAGCCTTAATATGA
6892148 CATAAATATT
Statistics
Matches: 131, Mismatches: 28, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
135 9 0.07
136 10 0.08
137 99 0.76
138 13 0.10
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (138 bp):
TTTTTATCCTATAAGCCTTAATATGATAGTTGGGAGTTTTGCTCTCGCTAACTACGTTGGAGGCT
ACAGTATTTATCCTACAAGCCTTAATATGAAAGCTAGGAGCTTTACTCTCACTAACTGTGTTAGA
GACTGCAA
Found at i:6892130 original size:69 final size:68
Alignment explanation
Indices: 6891773--6892147 Score: 281
Period size: 69 Copynumber: 5.5 Consensus size: 68
6891763 TGCATTAGAA
* * * * * * * *
6891773 GCTGCGATTTTTATCTTACGAGCTTTAGTATGACAA-CTGAGAGCTTTGCTTTTACTAATTTTGT
1 GCTGCGGTTTTTATCCTACAAGCCTTAATATGA-AAGCTG-GAGCTTTGCTCTTGCTAATTATGT
*
6891837 TGAAG
64 TGGAG
* * * * * * * *
6891842 GCTGTGGTTTTTATCCTATAATCCTTAGTAT--CAGCTGGGAGTTTTGCTCTCGCTAATTACGTT
1 GCTGCGGTTTTTATCCTACAAGCCTTAATATGAAAGCT-GGAGCTTTGCTCTTGCTAATTATGTT
6891905 GGAG
65 GGAG
* * * * * * * *
6891909 GCTACGGTTTTTATCTTGCAAGTCTTAATATGACAGCTGAGAGCTTTACTCTCGCTAATTGTGTT
1 GCTGCGGTTTTTATCCTACAAGCCTTAATATGAAAGCTG-GAGCTTTGCTCTTGCTAATTATGTT
*
6891974 AGAG
65 GGAG
* ** * * * * * *
6891978 ACTGCAATTTTTATCTTA-AAGCTTTAATATGATAGTTGGGAGTTTTGCTCTTGCTAACTATGTT
1 GCTGCGGTTTTTATCCTACAAGCCTTAATATGAAAGCT-GGAGCTTTGCTCTTGCTAATTATGTT
6892042 GGAG
65 GGAG
* * * * * *
6892046 GCTGCAGTATTTATCCTACGAGCCTTAATATGAAAGCTAGGAGCTTTGCTCTTACTAACTGTGTT
1 GCTGCGGTTTTTATCCTACAAGCCTTAATATGAAAGCT-GGAGCTTTGCTCTTGCTAATTATGTT
6892111 GGAG
65 GGAG
**
6892115 GCTGCGGTTTTTATCCTATGAGCCTTAATATGA
1 GCTGCGGTTTTTATCCTACAAGCCTTAATATGA
6892148 CATAAATATT
Statistics
Matches: 241, Mismatches: 58, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
66 1 0.00
67 47 0.20
68 54 0.22
69 139 0.58
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.39
Consensus pattern (68 bp):
GCTGCGGTTTTTATCCTACAAGCCTTAATATGAAAGCTGGAGCTTTGCTCTTGCTAATTATGTTG
GAG
Found at i:6907049 original size:117 final size:117
Alignment explanation
Indices: 6906896--6907129 Score: 441
Period size: 117 Copynumber: 2.0 Consensus size: 117
6906886 CATGAACGGA
6906896 GAACTAAAAGATTTATTGAATGCTAGAGACATGAAGCTTAATAGTGAGATTGATGAACTGAAAGA
1 GAACTAAAAGATTTATTGAATGCTAGAGACATGAAGCTTAATAGTGAGATTGATGAACTGAAAGA
*
6906961 TGGGCTGTCTGAGCCAAGGAAATCTGTTGAAGAGACAGCTGCTTCTGCAGAT
66 TAGGCTGTCTGAGCCAAGGAAATCTGTTGAAGAGACAGCTGCTTCTGCAGAT
*
6907013 GAACTAAAAGATTTATTGAATGCTAGGGACATGAAGCTTAATAGTGAGATTGATGAACTGAAAGA
1 GAACTAAAAGATTTATTGAATGCTAGAGACATGAAGCTTAATAGTGAGATTGATGAACTGAAAGA
*
6907078 TAGGCTGTCTGAGCCAAGGAAATCTGTTGAAGAGACAGTTGCTTCTGCAGAT
66 TAGGCTGTCTGAGCCAAGGAAATCTGTTGAAGAGACAGCTGCTTCTGCAGAT
6907130 AGAAACTTAT
Statistics
Matches: 114, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 114 1.00
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.26
Consensus pattern (117 bp):
GAACTAAAAGATTTATTGAATGCTAGAGACATGAAGCTTAATAGTGAGATTGATGAACTGAAAGA
TAGGCTGTCTGAGCCAAGGAAATCTGTTGAAGAGACAGCTGCTTCTGCAGAT
Found at i:6907557 original size:174 final size:174
Alignment explanation
Indices: 6907267--6907619 Score: 652
Period size: 174 Copynumber: 2.0 Consensus size: 174
6907257 AGGAAGCACT
*
6907267 TGAAATCAATGGTACCGGAGAAACAGAAGTTCCAAGGGACGAGGAAAAAAGAAGTCTCAAGTCTG
1 TGAAATCAATGGTACCGGAGAAACAGAAGTCCCAAGGGACGAGGAAAAAAGAAGTCTCAAGTCTG
*
6907332 ATACAGTAATTGAGATGCCTGTAAAAGGAGATACTGATCAGGGACAAGAGTGTACAGAAGTAAAA
66 ATACAGCAATTGAGATGCCTGTAAAAGGAGATACTGATCAGGGACAAGAGTGTACAGAAGTAAAA
* *
6907397 GGGGCTACAGCTGGTCTTGATTCAGTGGATGGTGGAGATGAAGA
131 GGGGCTACAGCTGGTCTTGATCCAGTGGATAGTGGAGATGAAGA
* *
6907441 TGAAATCAATGGTACCGGAGAAACAGAAGTCCCAAGGGATGAGGAAAAAATAAGTCTCAAGTCTG
1 TGAAATCAATGGTACCGGAGAAACAGAAGTCCCAAGGGACGAGGAAAAAAGAAGTCTCAAGTCTG
6907506 ATACAGCAATTGAGATGCCTGTAAAAGGAGATACTGATCAGGGACAAGAGTGTACAGAAGTAAAA
66 ATACAGCAATTGAGATGCCTGTAAAAGGAGATACTGATCAGGGACAAGAGTGTACAGAAGTAAAA
6907571 GGGGCTACAGCTGGTCTTGATCCAGTGGATAGTGGAGATGAAGA
131 GGGGCTACAGCTGGTCTTGATCCAGTGGATAGTGGAGATGAAGA
6907615 TGAAA
1 TGAAA
6907620 AAGCAAATAA
Statistics
Matches: 173, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 173 1.00
ACGTcount: A:0.38, C:0.13, G:0.30, T:0.19
Consensus pattern (174 bp):
TGAAATCAATGGTACCGGAGAAACAGAAGTCCCAAGGGACGAGGAAAAAAGAAGTCTCAAGTCTG
ATACAGCAATTGAGATGCCTGTAAAAGGAGATACTGATCAGGGACAAGAGTGTACAGAAGTAAAA
GGGGCTACAGCTGGTCTTGATCCAGTGGATAGTGGAGATGAAGA
Found at i:6908284 original size:6 final size:6
Alignment explanation
Indices: 6908273--6908298 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
6908263 AAGTGTCTCT
6908273 CAGGCA CAGGCA CAGGCA CAGGCA CA
1 CAGGCA CAGGCA CAGGCA CAGGCA CA
6908299 ACAAATTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.35, G:0.31, T:0.00
Consensus pattern (6 bp):
CAGGCA
Found at i:6915316 original size:15 final size:16
Alignment explanation
Indices: 6915282--6915315 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6915272 GTTAATAATT
* *
6915282 AAATTAAACTCTTAAA
1 AAATTAAATTCCTAAA
6915298 AAATTAAATTCCTAAA
1 AAATTAAATTCCTAAA
6915314 AA
1 AA
6915316 TAAATATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATTAAATTCCTAAA
Found at i:6915889 original size:11 final size:10
Alignment explanation
Indices: 6915866--6915899 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
6915856 AATTTATGCA
6915866 ATTTATATAT
1 ATTTATATAT
6915876 ATTTATATTAT
1 ATTTATA-TAT
6915887 ATTTA-ATAT
1 ATTTATATAT
6915896 ATTT
1 ATTT
6915900 TCATTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.30
10 8 0.35
11 8 0.35
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
ATTTATATAT
Found at i:6915952 original size:16 final size:14
Alignment explanation
Indices: 6915919--6915945 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6915909 ATTTTTTAGA
6915919 ATATTTAAAAATTT
1 ATATTTAAAAATTT
6915933 ATATTTAAAAATT
1 ATATTTAAAAATT
6915946 ATTATATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATATTTAAAAATTT
Found at i:6916239 original size:99 final size:99
Alignment explanation
Indices: 6916104--6916294 Score: 346
Period size: 99 Copynumber: 1.9 Consensus size: 99
6916094 GGATTATTAA
*
6916104 ATGGTGATTTTTTAATTTTCCATATACATATATAGAAATAGAAAAAGATAGAATAGAACCGACAT
1 ATGGTGATTTTTGAATTTTCCATATACATATATAGAAATAGAAAAAGATAGAATAGAACCGACAT
6916169 CTCTTATGTCATAACCATGACAATATACATATAT
66 CTCTTATGTCATAACCATGACAATATACATATAT
* * *
6916203 ATGGTGATTTTTGAATTTTCTATTTACATATATAGAAATAGAAAAAGATAGACTAGAACCGACAT
1 ATGGTGATTTTTGAATTTTCCATATACATATATAGAAATAGAAAAAGATAGAATAGAACCGACAT
6916268 CTCTTATGTCATAACCATGACAATATA
66 CTCTTATGTCATAACCATGACAATATA
6916295 AAAACGAAAT
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 88 1.00
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (99 bp):
ATGGTGATTTTTGAATTTTCCATATACATATATAGAAATAGAAAAAGATAGAATAGAACCGACAT
CTCTTATGTCATAACCATGACAATATACATATAT
Found at i:6917132 original size:16 final size:16
Alignment explanation
Indices: 6917113--6917143 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6917103 ATAGAAAATA
6917113 AATATAATATGTAAAC
1 AATATAATATGTAAAC
*
6917129 AATATACTATGTAAA
1 AATATAATATGTAAA
6917144 TGAATAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (16 bp):
AATATAATATGTAAAC
Found at i:6918033 original size:22 final size:21
Alignment explanation
Indices: 6917995--6918042 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
6917985 GTTTTACTTA
*
6917995 ATTATGATTAATGTTTTTAGGG
1 ATTATGATTAAT-ATTTTAGGG
6918017 ATTATGATTGAA-ATTTTAGGG
1 ATTATGATT-AATATTTTAGGG
*
6918038 TTTAT
1 ATTAT
6918043 ACCAAACCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 12 0.52
22 9 0.39
23 2 0.09
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (21 bp):
ATTATGATTAATATTTTAGGG
Found at i:6930149 original size:26 final size:26
Alignment explanation
Indices: 6930114--6930167 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
6930104 AAATATGATT
* *
6930114 AAATTATTTA-TTATTATTTTAATAA
1 AAATTATTTAGTAATAATTTTAATAA
*
6930139 AAATATATTTAGTAATAATTTTATTAA
1 AAAT-TATTTAGTAATAATTTTAATAA
6930166 AA
1 AA
6930168 TTTAATAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.17
26 6 0.25
27 14 0.58
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (26 bp):
AAATTATTTAGTAATAATTTTAATAA
Found at i:6931768 original size:35 final size:33
Alignment explanation
Indices: 6931710--6931775 Score: 80
Period size: 33 Copynumber: 1.9 Consensus size: 33
6931700 CAAGCCTTTT
*
6931710 AAGCGAACCCCCATTTTGCATGTGCGAACCCCTTAC
1 AAGCGAACCCCCA-TTTCCATGT--GAACCCCTTAC
6931746 AAGCGATACCCCC-TTTCCATGTGAACCCCT
1 AAGCGA-ACCCCCATTTCCATGTGAACCCCT
6931776 ATAGGTCCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
33 8 0.29
35 8 0.29
36 6 0.21
37 6 0.21
ACGTcount: A:0.24, C:0.38, G:0.15, T:0.23
Consensus pattern (33 bp):
AAGCGAACCCCCATTTCCATGTGAACCCCTTAC
Found at i:6932115 original size:36 final size:36
Alignment explanation
Indices: 6932075--6932171 Score: 92
Period size: 36 Copynumber: 2.8 Consensus size: 36
6932065 TTATTTGATT
* * * *
6932075 TTATATGCGAGCCGTGATAT-CTGAACCATGTGTTTA
1 TTATATGCGAGCCATGATATGC-GAACCATATATTGA
** *
6932111 TTATATATGAGCCATGTTATGCGAACCATATATTGA
1 TTATATGCGAGCCATGATATGCGAACCATATATTGA
*
6932147 TTATATGCGAGCC-T-ATATACGAACC
1 TTATATGCGAGCCATGATATGCGAACC
6932172 CTAGAATTAT
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
34 9 0.18
35 1 0.02
36 38 0.78
37 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34
Consensus pattern (36 bp):
TTATATGCGAGCCATGATATGCGAACCATATATTGA
Found at i:6932217 original size:29 final size:29
Alignment explanation
Indices: 6932155--6932252 Score: 101
Period size: 29 Copynumber: 3.4 Consensus size: 29
6932145 GATTATATGC
* * *
6932155 GAGCCTATATACGAACCCTA-GAATTATGCA
1 GAGCCTACATGCGAACCCTAGGAA-CATG-A
* *
6932185 -AGCCTATATGTGAACCCTAGGAACATGA
1 GAGCCTACATGCGAACCCTAGGAACATGA
* *
6932213 GAGCCTACATGCGAACCCTAGGTACATGC
1 GAGCCTACATGCGAACCCTAGGAACATGA
6932242 GAGCCTACATG
1 GAGCCTACATG
6932253 TGGGCCTATG
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.02
29 55 0.93
30 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (29 bp):
GAGCCTACATGCGAACCCTAGGAACATGA
Found at i:6932268 original size:70 final size:70
Alignment explanation
Indices: 6932186--6932318 Score: 187
Period size: 70 Copynumber: 1.9 Consensus size: 70
6932176 AATTATGCAA
* *
6932186 GCCTATATGTGAACCCTAGGAACATGAGAGCCTACATGCGAA-CCCTAGGTACATGCGAGCCTAC
1 GCCTATATGTGAACCCTAGGAACATGAGAGCCTACATGC-AACCCCTAGGTACATACAAGCCTAC
6932250 ATGTGG
65 ATGTGG
* * * * *
6932256 GCCTATGTGTGAACCCTAGGAACTTGCGAGTCTAGATGCAACCCCTAGGTACATACAAGCCTA
1 GCCTATATGTGAACCCTAGGAACATGAGAGCCTACATGCAACCCCTAGGTACATACAAGCCTA
6932319 TATGATCATG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
69 2 0.04
70 53 0.96
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (70 bp):
GCCTATATGTGAACCCTAGGAACATGAGAGCCTACATGCAACCCCTAGGTACATACAAGCCTACA
TGTGG
Found at i:6934246 original size:27 final size:26
Alignment explanation
Indices: 6934215--6934321 Score: 80
Period size: 24 Copynumber: 4.2 Consensus size: 26
6934205 TGGTTCTTAC
*
6934215 GAGCTTCCCGATTAA-AGGCTCTTTCG
1 GAGCTTCCCGATTAATAGGCTCTCT-G
** *
6934241 TGAGCTTCTTGATTAATTGGCTCTCTG
1 -GAGCTTCCCGATTAATAGGCTCTCTG
* * *
6934268 GAGCTTCCCGA-T-ATTGGCTCGCTT
1 GAGCTTCCCGATTAATAGGCTCTCTG
* *
6934292 GAACTTCCCG-TTAAT-GGCTCTCCG
1 GAGCTTCCCGATTAATAGGCTCTCTG
6934316 GAGCTT
1 GAGCTT
6934322 TCTGTTACAT
Statistics
Matches: 64, Mismatches: 13, Indels: 9
0.74 0.15 0.10
Matches are distributed among these distances:
24 31 0.48
25 3 0.05
26 9 0.14
27 14 0.22
28 7 0.11
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (26 bp):
GAGCTTCCCGATTAATAGGCTCTCTG
Found at i:6935152 original size:13 final size:13
Alignment explanation
Indices: 6935134--6935159 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6935124 GGGATTTGTT
6935134 TTAACTAAACTAA
1 TTAACTAAACTAA
6935147 TTAACTAAACTAA
1 TTAACTAAACTAA
6935160 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:6935984 original size:13 final size:13
Alignment explanation
Indices: 6935966--6935992 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6935956 GCTCGACAGG
6935966 GACACGCCCGTGT
1 GACACGCCCGTGT
6935979 GACACGCCCGTGT
1 GACACGCCCGTGT
6935992 G
1 G
6935993 CGAGTGCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:6938840 original size:29 final size:28
Alignment explanation
Indices: 6938776--6938840 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
6938766 TTTATTTCAT
* **
6938776 AAATAAATAATTTTGTTTTATTATATGA
1 AAATAAATAATTTTATTTTAAAATATGA
*
6938804 AATTAAAT-ATTTTATATTTAAAATAGTGA
1 AAATAAATAATTTTAT-TTTAAAATA-TGA
6938833 AAATAAAT
1 AAATAAAT
6938841 TAAAAGTTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 6 0.20
28 14 0.47
29 10 0.33
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (28 bp):
AAATAAATAATTTTATTTTAAAATATGA
Found at i:6941148 original size:21 final size:21
Alignment explanation
Indices: 6941124--6941163 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
6941114 TTAATGATGA
6941124 TTAAATTAAACTAATTAAGGG
1 TTAAATTAAACTAATTAAGGG
* **
6941145 TTAACTTAAGTTAATTAAG
1 TTAAATTAAACTAATTAAG
6941164 ATTAATTAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (21 bp):
TTAAATTAAACTAATTAAGGG
Found at i:6944508 original size:23 final size:23
Alignment explanation
Indices: 6944482--6944557 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
6944472 ATAAGTGCCA
6944482 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
6944505 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
6944528 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
6944551 CACTGAT
1 CACTGAT
6944558 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:6944657 original size:8 final size:8
Alignment explanation
Indices: 6944644--6944672 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
6944634 ACCCGGGACT
6944644 CACTGTAA
1 CACTGTAA
6944652 CACTGTAA
1 CACTGTAA
6944660 CACTGTAA
1 CACTGTAA
6944668 CACTG
1 CACTG
6944673 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:6944803 original size:18 final size:17
Alignment explanation
Indices: 6944777--6944815 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
6944767 ATTTTCCTTC
6944777 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
6944794 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
6944812 CACA
1 CACA
6944816 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:6951854 original size:23 final size:23
Alignment explanation
Indices: 6951828--6951903 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
6951818 ATAAGTGCCA
6951828 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
6951851 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
6951874 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
6951897 CACTGAT
1 CACTGAT
6951904 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:6952003 original size:8 final size:8
Alignment explanation
Indices: 6951990--6952018 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
6951980 ACCCGGGACT
6951990 CACTGTAA
1 CACTGTAA
6951998 CACTGTAA
1 CACTGTAA
6952006 CACTGTAA
1 CACTGTAA
6952014 CACTG
1 CACTG
6952019 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:6952149 original size:18 final size:17
Alignment explanation
Indices: 6952123--6952161 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
6952113 ATTTTCCTTC
6952123 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
6952140 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
6952158 CACA
1 CACA
6952162 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:6973098 original size:14 final size:14
Alignment explanation
Indices: 6973068--6973109 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
6973058 CGGAAGAGAG
* *
6973068 AAAGAA-AAGAGAG
1 AAAGAAGAAGAAAA
*
6973081 AAAGGAGAAGAAAA
1 AAAGAAGAAGAAAA
6973095 AAAGAAGAAGAAAA
1 AAAGAAGAAGAAAA
6973109 A
1 A
6973110 GGGAAAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
13 5 0.21
14 19 0.79
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AAAGAAGAAGAAAA
Found at i:6973325 original size:33 final size:33
Alignment explanation
Indices: 6973282--6973389 Score: 104
Period size: 33 Copynumber: 3.4 Consensus size: 33
6973272 GTTTTTTATA
*
6973282 ATTATTTTAAAATTAATTTGTTAGTAATTTAGG
1 ATTATGTTAAAATTAATTTGTTAGTAATTTAGG
*
6973315 ATTATGTTAAAATT-TTTTG-T-GT--TTGTA--
1 ATTATGTTAAAATTAATTTGTTAGTAATT-TAGG
* *
6973342 ATTATTTTAAAATTAATTTATTAGTAATTTAGG
1 ATTATGTTAAAATTAATTTGTTAGTAATTTAGG
*
6973375 ATTAAGTTATAAATT
1 ATTATGTTA-AAATT
6973390 GTTGTGTTTA
Statistics
Matches: 59, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
27 13 0.22
28 5 0.08
29 3 0.05
30 4 0.07
31 3 0.05
32 6 0.10
33 20 0.34
34 5 0.08
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (33 bp):
ATTATGTTAAAATTAATTTGTTAGTAATTTAGG
Found at i:6973359 original size:60 final size:61
Alignment explanation
Indices: 6973266--6973399 Score: 200
Period size: 60 Copynumber: 2.2 Consensus size: 61
6973256 ATGAATGTAT
* * *
6973266 TTTTTTGTTTTTTATAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTA-AAA
1 TTTTTTG-TGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAA
*
6973327 TTTTTTGTGTTTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAA
1 TTTTTTGTGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAA
*
6973388 -TTGTTGTGTTTA
1 TTTTTTGTGTTTA
6973400 GTTTAGTATT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
60 56 0.85
61 10 0.15
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.57
Consensus pattern (61 bp):
TTTTTTGTGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAA
Found at i:6981230 original size:22 final size:21
Alignment explanation
Indices: 6981205--6981248 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
6981195 ATGGATGGTA
6981205 TGTAGGGACTTT-AAAGAAAACT
1 TGTAGGG-CTTTGAAA-AAAACT
*
6981227 TGTATGGCTTTGAAAAAAACT
1 TGTAGGGCTTTGAAAAAAACT
6981248 T
1 T
6981249 ACCAAGAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (21 bp):
TGTAGGGCTTTGAAAAAAACT
Found at i:6983903 original size:30 final size:30
Alignment explanation
Indices: 6983868--6983964 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 30
6983858 ATATTTTATC
6983868 AATTTAATCTTAAATCTAAAAAATTTAATA
1 AATTTAATCTTAAATCTAAAAAATTTAATA
* * * * *
6983898 AATTTAACCCTCAATATTTATAAAATTT-ATT
1 AATTTAA-TCTTAA-ATCTAAAAAATTTAATA
* * * * *
6983929 ATTTTAATTTTAATTCTGAAAATTTTAATA
1 AATTTAATCTTAAATCTAAAAAATTTAATA
6983959 AATTTA
1 AATTTA
6983965 GCCCTCAACA
Statistics
Matches: 48, Mismatches: 16, Indels: 6
0.69 0.23 0.09
Matches are distributed among these distances:
29 8 0.17
30 17 0.35
31 12 0.25
32 11 0.23
ACGTcount: A:0.45, C:0.07, G:0.01, T:0.46
Consensus pattern (30 bp):
AATTTAATCTTAAATCTAAAAAATTTAATA
Found at i:6983935 original size:61 final size:61
Alignment explanation
Indices: 6983870--6983986 Score: 180
Period size: 61 Copynumber: 1.9 Consensus size: 61
6983860 ATTTTATCAA
*
6983870 TTTAATCTTAAATCTAAAAAATTTAATAAATTTAACCCTCAATATTTATAAAATTTATTAT
1 TTTAATCTTAAATCTAAAAAATTTAATAAATTTAACCCTCAACATTTATAAAATTTATTAT
* * * * *
6983931 TTTAATTTTAATTCTGAAAATTTTAATAAATTTAGCCCTCAACATTTATAAAATTT
1 TTTAATCTTAAATCTAAAAAATTTAATAAATTTAACCCTCAACATTTATAAAATTT
6983987 TGTCAATTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (61 bp):
TTTAATCTTAAATCTAAAAAATTTAATAAATTTAACCCTCAACATTTATAAAATTTATTAT
Found at i:6984740 original size:24 final size:24
Alignment explanation
Indices: 6984687--6984740 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
6984677 TTTTAATTAA
* *
6984687 ATTTTATAAATAATTAATATTTAT
1 ATTTTAAAAATAATTAAAATTTAT
*
6984711 -TGTTTAAAAATATTTAAAATTTAT
1 AT-TTTAAAAATAATTAAAATTTAT
6984735 ATTTTA
1 ATTTTA
6984741 TATATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 1 0.04
24 23 0.92
25 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTTAAAAATAATTAAAATTTAT
Found at i:6996773 original size:52 final size:52
Alignment explanation
Indices: 6996695--6996798 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
6996685 AACAGCTACA
* *
6996695 ACAAAATATTTTCAGAACTTATGTTATCCGTGGCTATCTAGAGCTCATTGGC
1 ACAAAATATTTTCAGAACTTATGTTATCCATGGCTATCCAGAGCTCATTGGC
*
6996747 ACAAAATATTTTCAGAACTTTTGTTATCCATGGCTATCCAGAGCTCATTGGC
1 ACAAAATATTTTCAGAACTTATGTTATCCATGGCTATCCAGAGCTCATTGGC
6996799 TATCTATTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (52 bp):
ACAAAATATTTTCAGAACTTATGTTATCCATGGCTATCCAGAGCTCATTGGC
Found at i:7002798 original size:16 final size:17
Alignment explanation
Indices: 7002771--7002811 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
7002761 GCTTGAGATT
7002771 TCAAAATATAAAAAGTA
1 TCAAAATATAAAAAGTA
* *
7002788 T-AAAATTTAAAAATTA
1 TCAAAATATAAAAAGTA
7002804 TCAAAATA
1 TCAAAATA
7002812 AAATATAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.29
Consensus pattern (17 bp):
TCAAAATATAAAAAGTA
Found at i:7005509 original size:23 final size:22
Alignment explanation
Indices: 7005445--7005525 Score: 101
Period size: 23 Copynumber: 3.6 Consensus size: 22
7005435 TGAGCTGATA
7005445 AACAGTAAGCTCTATTGAGCTG
1 AACAGTAAGCTCTATTGAGCTG
7005467 AACAGTAAGCTCT-TTCGAGCTG
1 AACAGTAAGCTCTATT-GAGCTG
* * *
7005489 AATCGGTAAGATCTAATGAGCTG
1 AA-CAGTAAGCTCTATTGAGCTG
7005512 AAACAGTAAGCTCT
1 -AACAGTAAGCTCT
7005526 TACGAGCTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
21 2 0.04
22 21 0.42
23 24 0.48
24 3 0.06
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (22 bp):
AACAGTAAGCTCTATTGAGCTG
Found at i:7008805 original size:10 final size:10
Alignment explanation
Indices: 7008786--7008835 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
7008776 TTAAATTCTA
7008786 AAAGATAAAT
1 AAAGATAAAT
7008796 ACAA-ATAAAT
1 A-AAGATAAAT
*
7008806 AAAGATAATT
1 AAAGATAAAT
7008816 AAAGATAAAT
1 AAAGATAAAT
7008826 GAAA-ATAAAT
1 -AAAGATAAAT
7008836 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:7013326 original size:21 final size:21
Alignment explanation
Indices: 7013302--7013356 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
7013292 GGTTACTACC
*
7013302 AACAAATTATAAATTGTTAAA
1 AACAAATTATAAAATGTTAAA
7013323 AACATAATTA-AAAATGTTAAA
1 AACA-AATTATAAAATGTTAAA
*
7013344 AA-AAATTTTAAAA
1 AACAAATTATAAAA
7013357 AAATTATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 4 0.13
20 5 0.17
21 16 0.53
22 5 0.17
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (21 bp):
AACAAATTATAAAATGTTAAA
Found at i:7019267 original size:23 final size:22
Alignment explanation
Indices: 7019241--7019283 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7019231 AAGAAGTAGA
7019241 AGAATGAAAAAAAAAGAAAAATT
1 AGAA-GAAAAAAAAAGAAAAATT
* *
7019264 AGAAGAACATAAAAGAAAAA
1 AGAAGAAAAAAAAAGAAAAA
7019284 AATTAAATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.74, C:0.02, G:0.14, T:0.09
Consensus pattern (22 bp):
AGAAGAAAAAAAAAGAAAAATT
Found at i:7025677 original size:50 final size:51
Alignment explanation
Indices: 7025600--7025728 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
7025590 GACCATGGCA
7025600 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
7025651 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
7025701 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
7025729 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:7025742 original size:31 final size:31
Alignment explanation
Indices: 7025704--7025821 Score: 193
Period size: 31 Copynumber: 3.8 Consensus size: 31
7025694 ACAAATGACA
*
7025704 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
7025735 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
7025766 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
7025797 AGTGAAAAATGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
7025822 AAGTGACAAG
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
30 2 0.02
31 78 0.96
32 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:7025916 original size:47 final size:46
Alignment explanation
Indices: 7025846--7025969 Score: 167
Period size: 47 Copynumber: 2.7 Consensus size: 46
7025836 AAGTGATTTC
* * *
7025846 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATTTGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATGTGATA
* *
7025892 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATGTGATA
* * *
7025939 CGTGTAAGACCATAGCTGGGCTATGGCATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
7025970 ATATATGAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATGTGATA
Found at i:7026052 original size:42 final size:42
Alignment explanation
Indices: 7025940--7026037 Score: 153
Period size: 42 Copynumber: 2.3 Consensus size: 42
7025930 TATGTGATTC
*
7025940 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
* *
7025982 ATGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGAT
7026024 GTGTAAGACCATAG
1 GTGTAAGACCATAG
7026038 TTGAATTATG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 50 0.98
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
Done.