Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 240 of 311
Found at i:80737728 original size:7 final size:7
Alignment explanation
Indices: 80737691--80737841 Score: 76
Period size: 7 Copynumber: 20.1 Consensus size: 7
80737681 TAAATAAAAA
80737691 TTATTAT
1 TTATTAT
80737698 ATATATTAT
1 -T-TATTAT
80737707 TT-TTAT
1 TTATTAT
80737713 TTATGTA-
1 TTAT-TAT
80737720 TTATTTAT
1 TTA-TTAT
80737728 TATATTAT
1 T-TATTAT
80737736 TTATATATT
1 TTAT-TA-T
80737745 TTATTAT
1 TTATTAT
*
80737752 ATATTAT
1 TTATTAT
*
80737759 ATCATT-T
1 -TTATTAT
*
80737766 TATTTTAT
1 T-TATTAT
*
80737774 ATATTAT
1 TTATTAT
*
80737781 TCATTAT
1 TTATTAT
*
80737788 AATATT-T
1 -TTATTAT
*
80737795 TTATTTT
1 TTATTAT
80737802 ATTATATATT
1 -TTAT-TA-T
80737812 TTATTAT
1 TTATTAT
80737819 ATTATTAT
1 -TTATTAT
80737827 TTATTAT
1 TTATTAT
*
80737834 TTAATAT
1 TTATTAT
80737841 T
1 T
80737842 ATGTATAATT
Statistics
Matches: 112, Mismatches: 14, Indels: 35
0.70 0.09 0.22
Matches are distributed among these distances:
6 11 0.10
7 47 0.42
8 35 0.31
9 18 0.16
10 1 0.01
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (7 bp):
TTATTAT
Found at i:80737766 original size:57 final size:55
Alignment explanation
Indices: 80737691--80737854 Score: 173
Period size: 55 Copynumber: 3.1 Consensus size: 55
80737681 TAAATAAAAA
*
80737691 TTATTATATA-TAT-TATTTTTATTTATGTATTATTTATTATATTATTTATATATT
1 TTATTATATATTATATA-TTTTATTTATATATTATTTATTATATTATTTATATATT
* *
80737745 TTATTATATATTATATCATTTTATTTTATATATTATTCATTATAATATTT-T-TATT
1 TTATTATATATTATAT-ATTTTA-TTTATATATTATTTATTATATTATTTATATATT
* * * *
80737800 TTATTATATATTTTATTATATTA-TTATTTATTATTTA--ATATTATGTATA-ATT
1 TTATTATATATTATA-TATTTTATTTATATATTATTTATTATATTATTTATATATT
80737852 TTA
1 TTA
80737855 AAAATTTGTA
Statistics
Matches: 94, Mismatches: 9, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
51 7 0.07
52 7 0.07
53 12 0.13
54 10 0.11
55 26 0.28
56 8 0.09
57 24 0.26
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (55 bp):
TTATTATATATTATATATTTTATTTATATATTATTTATTATATTATTTATATATT
Found at i:80737871 original size:67 final size:66
Alignment explanation
Indices: 80737731--80737873 Score: 146
Period size: 67 Copynumber: 2.1 Consensus size: 66
80737721 TATTTATTAT
* * * * *
80737731 ATTATTTATATATTTTATTATATATTATATCATTTTATTTTATATATTATTCATTATAATATTTT
1 ATTA-TTATATATTTTATTATATATTATATCATTTAATATTATATATAATT-ATTATAAAATTTG
*
80737796 TAT
64 TAA
* * *
80737799 TTTATTATATATTTTATTATATTATTATTTATTATTTAATATTATGTATAATT-TTA-AAAATTT
1 ATTATTATATATTTTATTATA-TATTA--TATCATTTAATATTATATATAATTATTATAAAATTT
80737862 GTAA
63 GTAA
80737866 ATTATTAT
1 ATTATTAT
80737874 TAAATAATAC
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
67 32 0.52
68 11 0.18
70 19 0.31
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (66 bp):
ATTATTATATATTTTATTATATATTATATCATTTAATATTATATATAATTATTATAAAATTTGTA
A
Found at i:80738457 original size:66 final size:66
Alignment explanation
Indices: 80738343--80738471 Score: 149
Period size: 66 Copynumber: 2.0 Consensus size: 66
80738333 ATATTTTATG
* * *
80738343 TTTATTATTTTCTATGTTTATTTGCACGACATGTAAATGTATATATTATGTAGTGTA-TATTGTT
1 TTTATTATTTGCTATGTTTATTCGCACGACATGTAAATGTATATATTATATAGTGTAGTATTGTT
80738407 A
66 A
* *
80738408 TTTATTATTTGCTATGTTATATTCGCATGA-A-GTATTAATGTATGA-ATTATATAGTTTAGTAT
1 TTTATTATTTGCTATGTT-TATTCGCACGACATGTA--AATGTAT-ATATTATATAGTGTAGTAT
80738470 TG
62 TG
80738472 ATATCTTGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
64 3 0.06
65 18 0.33
66 27 0.50
67 6 0.11
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (66 bp):
TTTATTATTTGCTATGTTTATTCGCACGACATGTAAATGTATATATTATATAGTGTAGTATTGTT
A
Found at i:80740060 original size:43 final size:45
Alignment explanation
Indices: 80740006--80740120 Score: 128
Period size: 43 Copynumber: 2.6 Consensus size: 45
80739996 TAAGTATAAT
* * * * *
80740006 TAAGTTATGTAAGTTATG-ACATTTATGTTATGATATATCTTTATG
1 TAAGTCATGTAAGTTATGTA-AGTTATGATATGATATATATTTATA
*
80740051 T-A-TCATGTAAGTTATGTAAGTTATGATCTGATATATATTTATA
1 TAAGTCATGTAAGTTATGTAAGTTATGATATGATATATATTTATA
* *
80740094 TAAGTTATGTAAGTTATGTATGTTATG
1 TAAGTCATGTAAGTTATGTAAGTTATG
80740121 TGAATTATAT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
43 34 0.58
44 3 0.05
45 22 0.37
ACGTcount: A:0.32, C:0.03, G:0.17, T:0.48
Consensus pattern (45 bp):
TAAGTCATGTAAGTTATGTAAGTTATGATATGATATATATTTATA
Found at i:80740069 original size:9 final size:9
Alignment explanation
Indices: 80740055--80740174 Score: 84
Period size: 9 Copynumber: 13.3 Consensus size: 9
80740045 TTTATGTATC
80740055 ATGTAAGTT
1 ATGTAAGTT
80740064 ATGTAAGTT
1 ATGTAAGTT
** *
80740073 ATG-ATCTG
1 ATGTAAGTT
* *
80740081 ATATATATTT
1 ATGTA-AGTT
*
80740091 ATATAAGTT
1 ATGTAAGTT
80740100 ATGTAAGTT
1 ATGTAAGTT
*
80740109 ATGTATGTT
1 ATGTAAGTT
80740118 ATGTGAA-TT
1 ATGT-AAGTT
*
80740127 ATATAAGTT
1 ATGTAAGTT
* *
80740136 ATGATATGAT
1 ATG-TAAGTT
* *
80740146 ATAT-ATTT
1 ATGTAAGTT
80740154 ATGTAAGTT
1 ATGTAAGTT
80740163 ATGTAAGTT
1 ATGTAAGTT
80740172 ATG
1 ATG
80740175 ACATTTATGA
Statistics
Matches: 84, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
8 10 0.12
9 61 0.73
10 13 0.15
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.47
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:80740101 original size:36 final size:34
Alignment explanation
Indices: 80740058--80740175 Score: 115
Period size: 36 Copynumber: 3.6 Consensus size: 34
80740048 ATGTATCATG
80740058 TAAGTTATGTAAGTTATGATCTGATATATATTTAT
1 TAAGTTATGTAAGTTATGAT-TGATATATATTTAT
* *
80740093 ATAAGTTATGTAAGTTATG--T-ATGT-TA--TGT
1 -TAAGTTATGTAAGTTATGATTGATATATATTTAT
* *
80740122 GAA-TTATATAAGTTATGATATGATATATATTTAT
1 TAAGTTATGTAAGTTATGAT-TGATATATATTTAT
80740156 GTAAGTTATGTAAGTTATGA
1 -TAAGTTATGTAAGTTATGA
80740176 CATTTATGAT
Statistics
Matches: 65, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
27 13 0.20
28 2 0.03
29 2 0.03
30 1 0.02
31 5 0.08
32 5 0.08
33 1 0.02
34 2 0.03
35 2 0.03
36 32 0.49
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.47
Consensus pattern (34 bp):
TAAGTTATGTAAGTTATGATTGATATATATTTAT
Found at i:80740156 original size:45 final size:45
Alignment explanation
Indices: 80740107--80740224 Score: 141
Period size: 45 Copynumber: 2.6 Consensus size: 45
80740097 GTTATGTAAG
80740107 TTATGTATGTTATGTGAA-TTAT-ATAAGTTATGATATGATATATAT
1 TTATGTATGTTATGT-AAGTTATGA-AAGTTATGATATGATATATAT
* * *
80740152 TTATGTAAGTTATGTAAGTTATGACATTTATGATATGATATATAT
1 TTATGTATGTTATGTAAGTTATGAAAGTTATGATATGATATATAT
* *
80740197 ATATTTATGTATTATGTAAGTTATGAAA
1 TTATGTATG--TTATGTAAGTTATGAAA
80740225 TTTGAACTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 2 0.03
45 43 0.69
46 1 0.02
47 16 0.26
ACGTcount: A:0.36, C:0.01, G:0.15, T:0.47
Consensus pattern (45 bp):
TTATGTATGTTATGTAAGTTATGAAAGTTATGATATGATATATAT
Found at i:80740180 original size:27 final size:27
Alignment explanation
Indices: 80740098--80740183 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
80740088 TTTATATAAG
** *
80740098 TTATGTAAGTTATGTATGTTATGTGAA
1 TTATGTAAGTTATGTATGTTATGACAT
* * *
80740125 TTATATAAGTTATGATATGATAT-ATAT
1 TTATGTAAGTTATG-TATGTTATGACAT
*
80740152 TTATGTAAGTTATGTAAGTTATGACAT
1 TTATGTAAGTTATGTATGTTATGACAT
80740179 TTATG
1 TTATG
80740184 ATATGATATA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
26 6 0.12
27 35 0.73
28 7 0.15
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.48
Consensus pattern (27 bp):
TTATGTAAGTTATGTATGTTATGACAT
Found at i:80740183 original size:63 final size:63
Alignment explanation
Indices: 80740062--80740183 Score: 192
Period size: 63 Copynumber: 1.9 Consensus size: 63
80740052 ATCATGTAAG
* * *
80740062 TTATGTAAGTTATGATCTGATATATATTTATATAAGTTATGTAAGTTATGTATGTTATGTGAA
1 TTATATAAGTTATGATATGATATATATTTATATAAGTTATGTAAGTTATGCATGTTATGTGAA
*
80740125 TTATATAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATGACAT-TTATG
1 TTATATAAGTTATGATATGATATATATTTATATAAGTTATGTAAGTTATG-CATGTTATG
80740184 ATATGATATA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
63 52 0.96
64 2 0.04
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (63 bp):
TTATATAAGTTATGATATGATATATATTTATATAAGTTATGTAAGTTATGCATGTTATGTGAA
Found at i:80740244 original size:49 final size:49
Alignment explanation
Indices: 80740006--80740227 Score: 188
Period size: 47 Copynumber: 4.5 Consensus size: 49
80739996 TAAGTATAAT
* * * * *
80740006 TAAGTTATGTAAGTTATGACATTTATGTTATGATATATCTTTATGTATCATG
1 TAAGTTATGTAAGTTATGAAATTTATGATATAATATATATATAT-T-T-ATG
* * *
80740058 TAAGTTATGTAAGTTATG--A--TCTGATAT-ATATTTATATAAGTTATG
1 TAAGTTATGTAAGTTATGAAATTTATGATATAATATATATAT-ATTTATG
* * * *
80740103 TAAGTTATGTATGTTATGTGAATTATATAAGTTATGATATGATATATATTTATG
1 TAAGTTATGTAAGTTATG-AAATT-TAT--GATATAATAT-ATATATATTTATG
* *
80740157 TAAGTTATGTAAGTTATGACATTTATGATATGATATATATATATTTATG
1 TAAGTTATGTAAGTTATGAAATTTATGATATAATATATATATATTTATG
80740206 T-A-TTATGTAAGTTATGAAATTT
1 TAAGTTATGTAAGTTATGAAATTT
80740228 GAACTTTAAA
Statistics
Matches: 143, Mismatches: 16, Indels: 27
0.77 0.09 0.15
Matches are distributed among these distances:
45 20 0.14
46 1 0.01
47 27 0.19
48 9 0.06
49 14 0.10
50 10 0.07
51 2 0.01
52 21 0.15
53 7 0.05
54 27 0.19
55 5 0.03
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (49 bp):
TAAGTTATGTAAGTTATGAAATTTATGATATAATATATATATATTTATG
Found at i:80742816 original size:28 final size:28
Alignment explanation
Indices: 80742771--80742847 Score: 100
Period size: 28 Copynumber: 2.6 Consensus size: 28
80742761 TCCCTAACCC
*
80742771 CTAACCCTTAACCCCTAAAAACCTAAACT
1 CTAA-CCTTAAACCCTAAAAACCTAAACT
80742800 CTAACCTTAAACCCTAAAAACCTAAACT
1 CTAACCTTAAACCCTAAAAACCTAAACT
* *
80742828 ATAAAACATTAAACCCTAAA
1 CT--AACCTTAAACCCTAAA
80742848 CCATAAACCA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 24 0.56
29 4 0.09
30 15 0.35
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (28 bp):
CTAACCTTAAACCCTAAAAACCTAAACT
Found at i:80742832 original size:22 final size:22
Alignment explanation
Indices: 80742802--80742926 Score: 62
Period size: 22 Copynumber: 5.7 Consensus size: 22
80742792 CCTAAACTCT
*
80742802 AACCTTAAACCCTAAAAACCTA
1 AACCATAAACCCTAAAAACCTA
* * * * *
80742824 AACTATAAAACATTAAACCCTA
1 AACCATAAACCCTAAAAACCTA
* *
80742846 AACCATAAACCAT-AAAACAATA
1 AACCATAAACCCTAAAAAC-CTA
* * *
80742868 AA-TATCAACCACT-AAAACATA
1 AACCATAAACC-CTAAAAACCTA
*
80742889 AACCCTAAACCCTAAAATA-CTA
1 AACCATAAACCCTAAAA-ACCTA
*
80742911 AA-CATTAAGCCCTAAA
1 AACCA-TAAACCCTAAA
80742927 CTGTAAAACA
Statistics
Matches: 78, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
21 18 0.23
22 59 0.76
23 1 0.01
ACGTcount: A:0.54, C:0.26, G:0.01, T:0.18
Consensus pattern (22 bp):
AACCATAAACCCTAAAAACCTA
Found at i:80742847 original size:7 final size:7
Alignment explanation
Indices: 80742817--80742904 Score: 54
Period size: 7 Copynumber: 12.4 Consensus size: 7
80742807 TAAACCCTAA
80742817 AAACC-T
1 AAACCAT
*
80742823 AAACTAT
1 AAACCAT
*
80742830 AAAACATT
1 AAACCA-T
*
80742838 AAACCCT
1 AAACCAT
80742845 AAACCAT
1 AAACCAT
80742852 AAACCAT
1 AAACCAT
*
80742859 AAAACAAT
1 -AAACCAT
*
80742867 AAA-TAT
1 AAACCAT
*
80742873 CAACCACT
1 AAACCA-T
*
80742881 AAAACAT
1 AAACCAT
*
80742888 AAACCCT
1 AAACCAT
*
80742895 AAACCCT
1 AAACCAT
80742902 AAA
1 AAA
80742905 ATACTAAACA
Statistics
Matches: 63, Mismatches: 14, Indels: 9
0.73 0.16 0.10
Matches are distributed among these distances:
6 8 0.13
7 39 0.62
8 16 0.25
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.17
Consensus pattern (7 bp):
AAACCAT
Found at i:80742848 original size:14 final size:14
Alignment explanation
Indices: 80742817--80742904 Score: 54
Period size: 15 Copynumber: 6.2 Consensus size: 14
80742807 TAAACCCTAA
*
80742817 AAACC-TAAACTAT
1 AAACCATAAACCAT
* *
80742830 AAAACATTAAACCCT
1 AAACCA-TAAACCAT
80742845 AAACCATAAACCAT
1 AAACCATAAACCAT
* *
80742859 AAAACAATAAA-TAT
1 -AAACCATAAACCAT
* *
80742873 CAACCACTAAAACAT
1 AAACCA-TAAACCAT
* *
80742888 AAACCCTAAACCCT
1 AAACCATAAACCAT
80742902 AAA
1 AAA
80742905 ATACTAAACA
Statistics
Matches: 56, Mismatches: 14, Indels: 9
0.71 0.18 0.11
Matches are distributed among these distances:
13 8 0.14
14 22 0.39
15 26 0.46
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.17
Consensus pattern (14 bp):
AAACCATAAACCAT
Found at i:80742933 original size:29 final size:28
Alignment explanation
Indices: 80742877--80742954 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
80742867 AAATATCAAC
80742877 CACTAAAACATAAACCCTAAACCCTAAAA
1 CACT-AAACATAAACCCTAAACCCTAAAA
* * **
80742906 TACTAAACATTAAGCCCTAAACTGTAAAA
1 CACTAAACA-TAAACCCTAAACCCTAAAA
* *
80742935 CACTAGACTCTAAACCCTAA
1 CACTAAAC-ATAAACCCTAA
80742955 CCATAAACTA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.49, C:0.28, G:0.04, T:0.19
Consensus pattern (28 bp):
CACTAAACATAAACCCTAAACCCTAAAA
Found at i:80745560 original size:29 final size:28
Alignment explanation
Indices: 80745512--80745566 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
80745502 GAGTTATACC
*
80745512 GATTTGGCTTCGAGCTATGAATATCAGCT
1 GATTTGGCTTCGAGCCATG-ATATCAGCT
* *
80745541 GATTTGGCTTTGGGCCATGATATCAG
1 GATTTGGCTTCGAGCCATGATATCAG
80745567 TACTGTAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (28 bp):
GATTTGGCTTCGAGCCATGATATCAGCT
Found at i:80748139 original size:16 final size:17
Alignment explanation
Indices: 80748118--80748150 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80748108 TAAATTTATC
80748118 ATTTT-ATTGAAATAAT
1 ATTTTAATTGAAATAAT
*
80748134 ATTTTAATTGAGATAAT
1 ATTTTAATTGAAATAAT
80748151 TTTCATTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (17 bp):
ATTTTAATTGAAATAAT
Found at i:80752423 original size:28 final size:29
Alignment explanation
Indices: 80752383--80752437 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
80752373 TTTAAATATT
80752383 TTTTAAAAATAAT-A-TTTATTTTATTTTG
1 TTTTAAAAATAATAATTTTA-TTTATTTTG
* *
80752411 TTTTAATATTAATAATTTTATTTATTT
1 TTTTAAAAATAATAATTTTATTTATTT
80752438 ATTTATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 11 0.48
29 8 0.35
30 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (29 bp):
TTTTAAAAATAATAATTTTATTTATTTTG
Found at i:80755146 original size:20 final size:21
Alignment explanation
Indices: 80755123--80755169 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
80755113 GTCCACATCA
*
80755123 ATTTAATATTAAA-GAATAAT
1 ATTTAATATCAAACGAATAAT
** *
80755143 ATTTTCTATCAAACTAATAAT
1 ATTTAATATCAAACGAATAAT
80755164 ATTTAA
1 ATTTAA
80755170 ATATAAAATA
Statistics
Matches: 20, Mismatches: 6, Indels: 1
0.74 0.22 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTTAATATCAAACGAATAAT
Found at i:80755216 original size:15 final size:15
Alignment explanation
Indices: 80755193--80755223 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
80755183 TATATTAATT
*
80755193 TAATTAAATATTTTA
1 TAATAAAATATTTTA
80755208 TAATAAAATATTTTA
1 TAATAAAATATTTTA
80755223 T
1 T
80755224 TTTATATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TAATAAAATATTTTA
Found at i:80755288 original size:18 final size:18
Alignment explanation
Indices: 80755265--80755314 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
80755255 TTATACTAAA
80755265 TTATATTAAAAGATTTTT
1 TTATATTAAAAGATTTTT
** *
80755283 TTATATTAAATTA-TATT
1 TTATATTAAAAGATTTTT
80755300 TTATA-TAAAAGATTT
1 TTATATTAAAAGATTT
80755315 AACATATTGT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
16 5 0.20
17 9 0.36
18 11 0.44
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (18 bp):
TTATATTAAAAGATTTTT
Found at i:80764227 original size:24 final size:24
Alignment explanation
Indices: 80764172--80764227 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
80764162 ATACTAAATC
* *
80764172 TTAAAATTAATAATAATAAAAGGT
1 TTAAAATAAATAATAATAAAAGAT
* *
80764196 TTATAATAAATAATAA-AAGAGAAT
1 TTAAAATAAATAATAATAAAAG-AT
80764220 TTAAAATA
1 TTAAAATA
80764228 GTTAACATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (24 bp):
TTAAAATAAATAATAATAAAAGAT
Found at i:80767425 original size:23 final size:22
Alignment explanation
Indices: 80767399--80767454 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
80767389 GTATTTGGAC
80767399 TTTGATTTTGGGTTTATTATTTT
1 TTTGATTTTGGGTTT-TTATTTT
* ** *
80767422 TTTGTTTTTTTGTTTTTTTTTT
1 TTTGATTTTGGGTTTTTATTTT
*
80767444 TTTGGTTTTGG
1 TTTGATTTTGG
80767455 TGTAAGCCCG
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 14 0.54
23 12 0.46
ACGTcount: A:0.05, C:0.00, G:0.18, T:0.77
Consensus pattern (22 bp):
TTTGATTTTGGGTTTTTATTTT
Found at i:80767431 original size:8 final size:8
Alignment explanation
Indices: 80767418--80767452 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
80767408 GGGTTTATTA
80767418 TTTTTTTG
1 TTTTTTTG
80767426 TTTTTTTG
1 TTTTTTTG
80767434 TTTTTTT-
1 TTTTTTTG
*
80767441 TTTTTTGG
1 TTTTTTTG
80767449 TTTT
1 TTTT
80767453 GGTGTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (8 bp):
TTTTTTTG
Found at i:80767437 original size:14 final size:14
Alignment explanation
Indices: 80767420--80767453 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80767410 GTTTATTATT
80767420 TTTTTGTTTTTTTG
1 TTTTTGTTTTTTTG
*
80767434 TTTTTTTTTTTTTG
1 TTTTTGTTTTTTTG
*
80767448 GTTTTG
1 TTTTTG
80767454 GTGTAAGCCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (14 bp):
TTTTTGTTTTTTTG
Found at i:80767921 original size:43 final size:45
Alignment explanation
Indices: 80767851--80767945 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 45
80767841 CAACTTAGGG
* ** *
80767851 AGATAAGATCTTCGATCTTCAGTCTGCTTTCTTGCTACCTCAGAA
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
*
80767896 AGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
80767939 AGATAAG
1 AGATAAG
80767946 GCTTGAGGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
43 36 0.80
44 1 0.02
45 8 0.18
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
Found at i:80767969 original size:176 final size:175
Alignment explanation
Indices: 80767670--80767988 Score: 471
Period size: 176 Copynumber: 1.8 Consensus size: 175
80767660 CGCAACTGCT
*
80767670 TTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTAAAAT
1 TTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTAAAAT
* * *
80767735 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGACTAGTGGTAAAATCTGCTCCATT-GTCG
66 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGACTAGAGGTAAAATCCGCTCCATTACT-G
*
80767799 ATACATGGAGATAAAATTCACCATCTTCGATTTACTCCGCTGCAAC
130 ATACATAGAGATAAAATTCACCATCTTCGATTTACTCCGCTGCAAC
* * * *
80767845 TTAGGGAGATAAGATCTTCGATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACT-CAA
1 TTAGGGAAAT-AGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTAAAA
** * * *
80767909 TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGAGGCTTAAATCCGCTCCATTACT
65 TCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGACTAGAGG-TAAAATCCGCTCCATTACT
80767974 GATACATAGAGATAA
129 GATACATAGAGATAA
80767989 GATTTTCCTC
Statistics
Matches: 127, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
175 51 0.40
176 75 0.59
177 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (175 bp):
TTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTAAAAT
CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGACTAGAGGTAAAATCCGCTCCATTACTGA
TACATAGAGATAAAATTCACCATCTTCGATTTACTCCGCTGCAAC
Found at i:80768136 original size:147 final size:146
Alignment explanation
Indices: 80767858--80768139 Score: 379
Period size: 147 Copynumber: 1.9 Consensus size: 146
80767848 GGGAGATAAG
* *
80767858 ATCTTCGATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTC
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTC
* * * *
80767923 TCTTGCTACCTCAGAGAGATAAGGCTTGAGGCTTAAATCCGCTCCATTACTGATACATAGAGATA
66 TCTTACTACCTAAGAGAGATAAGGCTAGAGGCTAAAATCCGCTCCATTACTGATACATAGAGATA
80767988 AGATTTTCCTCTTCCA
131 AGATTTTCCTCTTCCA
* * *
80768004 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACCATCTTTAACCTGCT
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACT-CAATCTTCAACCTGCT
* * ** * * *
80768069 CTCTTACTTCCTAAGAGAGATAAGG-TCAGTGGCTAAAATTTGCTCCATTGCCT-ATACATGGAT
65 CTCTTACTACCTAAGAGAGATAAGGCT-AGAGGCTAAAATCCGCTCCATT-ACTGATACATAGAG
80768132 ATAAGATT
128 ATAAGATT
80768140 AGCCATCTGC
Statistics
Matches: 117, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
146 46 0.39
147 69 0.59
148 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (146 bp):
ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTC
TCTTACTACCTAAGAGAGATAAGGCTAGAGGCTAAAATCCGCTCCATTACTGATACATAGAGATA
AGATTTTCCTCTTCCA
Found at i:80768203 original size:90 final size:90
Alignment explanation
Indices: 80768082--80768355 Score: 300
Period size: 90 Copynumber: 3.1 Consensus size: 90
80768072 TTACTTCCTA
* * * *
80768082 AGAGAGATAAGGTC-AGTGGCTAAAATTTGCTCCATTGCCTATACATGGATATAAGATTAGCCAT
1 AGAGAGATAA-GTCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTAGCCAT
80768146 CTGCGAATATCTGCTCCGCTGCAACTC
65 CTGCGAA-ATCTGCTCCGCTGCAACTC
80768173 AGAGAGATAAGTCTGGTGG-TAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCA-CCAT
1 AGAGAGATAAGTCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATT-AGCCAT
*
80768236 CTTCG--ATCTGCT-C-C-G---CTC
65 CTGCGAAATCTGCTCCGCTGCAACTC
* * * * ** *
80768254 AGAGAGATAAGGCTGGTGGCTTAAATCTACCCCATTATCGATACATGGAGATAAGATTAGTCATC
1 AGAGAGATAAGTCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTAGCCATC
*
80768319 TGTGAAGATCTGCTCCGCTGCAACTTC
66 TGCGAA-ATCTGCTCCGCTGCAAC-TC
*
80768346 AGGGAGATAA
1 AGAGAGATAA
80768356 AATCTTCAGT
Statistics
Matches: 154, Mismatches: 15, Indels: 27
0.79 0.08 0.14
Matches are distributed among these distances:
81 22 0.14
82 39 0.25
84 1 0.01
85 8 0.05
86 2 0.01
87 8 0.05
88 1 0.01
90 46 0.30
91 16 0.10
92 11 0.07
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (90 bp):
AGAGAGATAAGTCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTAGCCATC
TGCGAAATCTGCTCCGCTGCAACTC
Found at i:80768319 original size:82 final size:83
Alignment explanation
Indices: 80768170--80768337 Score: 216
Period size: 82 Copynumber: 2.0 Consensus size: 83
80768160 TCCGCTGCAA
* * * *
80768170 CTCAGAGAGATAAGTCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCA
1 CTCAGAGAGATAAGGCTGGTGGTAAAATCTACCCCATTACCGATACATGGAGATAAGATTCACCA
*
80768235 TCT-T-CGATCTGCTCCG
66 TCTGTAAGATCTGCTCCG
* * *
80768251 CTCAGAGAGATAAGGCTGGTGGCTTAAATCTACCCCATTATCGATACATGGAGATAAGATT-AGT
1 CTCAGAGAGATAAGGCTGGTGG-TAAAATCTACCCCATTACCGATACATGGAGATAAGATTCA-C
80768315 CATCTGTGAAGATCTGCTCCG
64 CATCTGT-AAGATCTGCTCCG
80768336 CT
1 CT
80768338 GCAACTTCAG
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
81 22 0.30
82 38 0.51
83 1 0.01
85 13 0.18
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (83 bp):
CTCAGAGAGATAAGGCTGGTGGTAAAATCTACCCCATTACCGATACATGGAGATAAGATTCACCA
TCTGTAAGATCTGCTCCG
Found at i:80768470 original size:172 final size:171
Alignment explanation
Indices: 80768010--80768531 Score: 459
Period size: 172 Copynumber: 3.0 Consensus size: 171
80768000 TCCAATCTTC
* *
80768010 AATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACCATCTTTAACCTGCTCTCTTA
1 AATCTTCAGTCTGCTTCATTGCTACCTCAGGAAGATAAGACT--CATCTTTAACCTGCTCTCTTG
* * * *
80768075 CTTCCTAAGAGAGATAAGG-TCAGTGGCTAAAATTTGCTCCATTGCCTATACATGGATATAAGAT
64 C-TCCTCAGAGAGATAAGGCT-AGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGAT
* * *
80768139 TAGCCATCTGCGAATATCTGCTCCGCTGCAAC-TCAGAGAGAT-A
127 TAGCCATCTGTGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
* * * * * * ** *
80768182 AGTCTGGTGGTAAAATCTGCTCCATTGC--CGATACATGG-AGATAAGATTCACCATCTTCGATC
1 AATC---T--T-CAGTCTGCTTCATTGCTAC-CT-CA-GGAAGATAAGA--C-TCATCTTTAACC
* * * * **
80768244 TGCTC-C--G---CTCAGAGAGATAAGGCTGGTGGCTTAAATCTACCCCATTATCGATACATGGA
54 TGCTCTCTTGCTCCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGA
*
80768303 GATAAGATTAGTCATCTGTGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
119 GATAAGATTAGCCATCTGTGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
* *
80768356 AATCTTCAGTCTGCTTCTTTGCTACCTCAGGAATATAAGACTCATTCTTTAACCTGCTCTCTTGC
1 AATCTTCAGTCTGCTTCATTGCTACCTCAGGAAGATAAGACTCA-TCTTTAACCTGCTCTCTTGC
*
80768421 TACCTCAGAGAGATAAGGCTTGTGG-TAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
65 T-CCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATT-
** *
80768485 A-CCAT-T-T-TCGATCTGCT-CACTGCAACTTCAGGGAGATAA
128 AGCCATCTGTGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
*
80768524 GATCTTCA
1 AATCTTCA
80768532 ATCTTTAGTT
Statistics
Matches: 276, Mismatches: 47, Indels: 58
0.72 0.12 0.15
Matches are distributed among these distances:
165 2 0.01
166 12 0.04
167 3 0.01
168 49 0.18
169 11 0.04
170 2 0.01
171 2 0.01
172 116 0.42
173 32 0.12
174 4 0.01
175 1 0.00
176 1 0.00
177 2 0.01
178 23 0.08
179 15 0.05
180 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (171 bp):
AATCTTCAGTCTGCTTCATTGCTACCTCAGGAAGATAAGACTCATCTTTAACCTGCTCTCTTGCT
CCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTAGC
CATCTGTGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
Found at i:80768855 original size:64 final size:64
Alignment explanation
Indices: 80768750--80768877 Score: 184
Period size: 64 Copynumber: 2.0 Consensus size: 64
80768740 TTCATGTATC
** *
80768750 ATGCTTATGCCAAATAATTAGAATGTTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGAATACTATGAACAAAATGAATCAAATGCTCCTAACTAGATGTG
* * * * *
80768814 ATGCTTATGTCAAATAATTAGGATACTATGAACGAATTGAATCAAATGCTCCTAATTAGATGTG
1 ATGCTTATGCCAAATAATTAGAATACTATGAACAAAATGAATCAAATGCTCCTAACTAGATGTG
80768878 TTATGAATGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.32
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGAATACTATGAACAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:80769987 original size:8 final size:8
Alignment explanation
Indices: 80769974--80769999 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
80769964 TTCTTTCTTT
80769974 TTTTATTA
1 TTTTATTA
80769982 TTTTATTA
1 TTTTATTA
80769990 TTTTATTA
1 TTTTATTA
80769998 TT
1 TT
80770000 AATTTCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTATTA
Found at i:80770547 original size:56 final size:56
Alignment explanation
Indices: 80770477--80770582 Score: 194
Period size: 56 Copynumber: 1.9 Consensus size: 56
80770467 GTTTTATGTA
* *
80770477 TTATGATATGATATATATTTATGTATTATGTTAGTTATGTAAGTTATGATCCAAAG
1 TTATGATACGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGATCCAAAG
80770533 TTATGATACGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
1 TTATGATACGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
80770583 ATAATATATA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (56 bp):
TTATGATACGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGATCCAAAG
Found at i:80771658 original size:43 final size:44
Alignment explanation
Indices: 80771597--80771689 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
80771587 TCCTAATTGG
80771597 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
80771640 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
80771684 -AAAATA
1 GAAAATA
80771690 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:80771733 original size:19 final size:18
Alignment explanation
Indices: 80771711--80771750 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
80771701 TGAATAAAAC
80771711 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
80771730 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
80771748 TTA
1 TTA
80771751 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:80776400 original size:43 final size:44
Alignment explanation
Indices: 80776339--80776431 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
80776329 TCCTAATTGG
80776339 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
80776382 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
80776426 -AAAATA
1 GAAAATA
80776432 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:80778543 original size:27 final size:25
Alignment explanation
Indices: 80778486--80778535 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
80778476 TCCAAATGGA
80778486 TAAAAAAATAAATAATTTAAAAAAT
1 TAAAAAAATAAATAATTTAAAAAAT
*
80778511 TAAAAATAAAAAATTAATTTAAAAA
1 TAAAAA-AATAAA-TAATTTAAAAA
80778536 CTCTAAAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 6 0.27
26 5 0.23
27 11 0.50
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (25 bp):
TAAAAAAATAAATAATTTAAAAAAT
Found at i:80784762 original size:18 final size:19
Alignment explanation
Indices: 80784720--80784764 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
80784710 TCAAGATCTT
80784720 AAATTAATGTGATCCAAAG
1 AAATTAATGTGATCCAAAG
*
80784739 AAATTAATGTGTTCCAAA-
1 AAATTAATGTGATCCAAAG
80784757 AAATTAAT
1 AAATTAAT
80784765 TAGTACATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (19 bp):
AAATTAATGTGATCCAAAG
Found at i:80784985 original size:117 final size:119
Alignment explanation
Indices: 80784761--80785007 Score: 419
Period size: 117 Copynumber: 2.1 Consensus size: 119
80784751 TCCAAAAAAT
* *
80784761 TAATTAGTACATTTTCCAAATATCTTTATTTTCAACATTTTTAAATTAATTAGTGTAATCAATTT
1 TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATTCTTAAATTAATTAGTGTAATCAATTT
80784826 AGTCCCAAAAATTAGAGTCAACATCTTTAAAAAAGGGAAAAATTAATTTTGTTG
66 AGTCCCAAAAATTAGAGTCAACATCTTTAAAAAAGGGAAAAATTAATTTTGTTG
80784880 TAATTAGTACATTTTCCAAATATCTTCATTTTCAACA-TCTTAAATTAATTAGTGTAATCAATTT
1 TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATTCTTAAATTAATTAGTGTAATCAATTT
* *
80784944 AGT-CCAAAAATTAGAGTCAACATC-TTAAAAAAGGGGAAAAATTATTTTTTTTG
66 AGTCCCAAAAATTAGAGTCAACATCTTTAAAAAA-GGGAAAAATTAATTTTGTTG
*
80784997 TAATTAATACA
1 TAATTAGTACA
80785008 ATAAATAGGC
Statistics
Matches: 122, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
116 8 0.07
117 49 0.40
118 29 0.24
119 36 0.30
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (119 bp):
TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATTCTTAAATTAATTAGTGTAATCAATTT
AGTCCCAAAAATTAGAGTCAACATCTTTAAAAAAGGGAAAAATTAATTTTGTTG
Found at i:80788568 original size:16 final size:15
Alignment explanation
Indices: 80788543--80788572 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
80788533 TTTAGTCCCA
80788543 TTTTTTATTTTTTTG
1 TTTTTTATTTTTTTG
80788558 TTTTATTATTTTTTT
1 TTTT-TTATTTTTTT
80788573 TATGTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.10, C:0.00, G:0.03, T:0.87
Consensus pattern (15 bp):
TTTTTTATTTTTTTG
Found at i:80788953 original size:3 final size:3
Alignment explanation
Indices: 80788947--80789032 Score: 52
Period size: 3 Copynumber: 28.7 Consensus size: 3
80788937 CTTATATCTT
* * *
80788947 TAA TAA TAA TAA TAA TACA T-A TAA TATT TAA TAA TCA T-A CAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* * * * *
80788992 TAA TAC TTA TAA TATT TAA TAA TAA T-A CAA TAA TAA AAA TA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA
80789033 TGTTTAACAA
Statistics
Matches: 62, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
2 4 0.06
3 52 0.84
4 6 0.10
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:80788981 original size:22 final size:21
Alignment explanation
Indices: 80788953--80788993 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
80788943 TCTTTAATAA
80788953 TAATAATAATACATATAATATT
1 TAATAATAATACA-ATAATATT
*
80788975 TAATAATCATACAATAATA
1 TAATAATAATACAATAATA
80788994 ATACTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (21 bp):
TAATAATAATACAATAATATT
Found at i:80788996 original size:33 final size:33
Alignment explanation
Indices: 80788947--80789027 Score: 130
Period size: 33 Copynumber: 2.5 Consensus size: 33
80788937 CTTATATCTT
80788947 TAATAAT--AATAATAATACATATAATATTTAA
1 TAATAATACAATAATAATACATATAATATTTAA
* *
80788978 TAATCATACAATAATAATACTTATAATATTTAA
1 TAATAATACAATAATAATACATATAATATTTAA
80789011 TAATAATACAATAATAA
1 TAATAATACAATAATAA
80789028 AAATATGTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 6 0.13
33 39 0.87
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (33 bp):
TAATAATACAATAATAATACATATAATATTTAA
Found at i:80789963 original size:19 final size:19
Alignment explanation
Indices: 80789927--80789964 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
80789917 GAAAATTACA
*
80789927 AAAATATAATTTTATATTT
1 AAAATATAATTATATATTT
80789946 AAAATA-AATTATATTATTT
1 AAAATATAATTATA-TATTT
80789965 GATAGTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
AAAATATAATTATATATTT
Found at i:80790780 original size:20 final size:20
Alignment explanation
Indices: 80790734--80790788 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
80790724 AAAATACACA
* *
80790734 AAAAAAATAACAAAAACAAC
1 AAAAAAACAACAAGAACAAC
** *
80790754 ACCAAAACACCAAGAACAAC
1 AAAAAAACAACAAGAACAAC
*
80790774 AAAAAAACAGCAAGA
1 AAAAAAACAACAAGA
80790789 TAATTTTTAT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.71, C:0.22, G:0.05, T:0.02
Consensus pattern (20 bp):
AAAAAAACAACAAGAACAAC
Found at i:80791849 original size:19 final size:20
Alignment explanation
Indices: 80791820--80791864 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
80791810 TGTTTTTTTT
*
80791820 TTTATTTTTAAGTAATATA-A
1 TTTA-TTTTAAATAATATATA
*
80791840 TTTATTTTAAATATTATATA
1 TTTATTTTAAATAATATATA
80791860 TTTAT
1 TTTAT
80791865 AAAAAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTATTTTAAATAATATATA
Found at i:80791862 original size:20 final size:19
Alignment explanation
Indices: 80791820--80791880 Score: 56
Period size: 20 Copynumber: 3.3 Consensus size: 19
80791810 TGTTTTTTTT
*
80791820 TTTATTTTTAAGTAATATAA
1 TTTA-TTTTAAATAATATAA
80791840 TTTATTTTAAAT-AT-T-A
1 TTTATTTTAAATAATATAA
* *
80791856 TATATTTATAAAAAATATAA
1 TTTATTT-TAAATAATATAA
80791876 TTTAT
1 TTTAT
80791881 CTATTTTTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 7 0.21
17 5 0.15
18 4 0.12
19 8 0.24
20 9 0.27
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TTTATTTTAAATAATATAA
Found at i:80796250 original size:37 final size:36
Alignment explanation
Indices: 80796209--80796279 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
80796199 ATAGAGTTAA
*
80796209 AATTTAAAATTTATGTT-TGTATTTTTTATATATTTGT
1 AATTTAAAATTTATGTTGT-TATTTTTAATA-ATTTGT
**
80796246 AATTTAATTTTTATGTTGTTATTTTTAATAATTT
1 AATTTAAAATTTATGTTGTTATTTTTAATAATTT
80796280 AATCTTTCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 4 0.13
37 25 0.83
38 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (36 bp):
AATTTAAAATTTATGTTGTTATTTTTAATAATTTGT
Found at i:80801726 original size:2 final size:2
Alignment explanation
Indices: 80801719--80801743 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80801709 TTTAAAAAGG
80801719 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
80801744 GAATGTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80802083 original size:3 final size:3
Alignment explanation
Indices: 80802075--80802101 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
80802065 TCGTTGTTAA
80802075 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
80802102 TGCTACTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:80803061 original size:2 final size:2
Alignment explanation
Indices: 80803054--80803084 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
80803044 AAATGAAGTT
80803054 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80803085 TTAAAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80803666 original size:20 final size:20
Alignment explanation
Indices: 80803623--80803660 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80803613 TTTTTTTATG
*
80803623 TATTTAAATTTATATTTTGT
1 TATTTAAATTAATATTTTGT
*
80803643 TATTTAAGTTAATATTTT
1 TATTTAAATTAATATTTT
80803661 TATATTAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (20 bp):
TATTTAAATTAATATTTTGT
Found at i:80806303 original size:3 final size:3
Alignment explanation
Indices: 80806295--80806343 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
80806285 CTGCTTTTGA
80806295 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
80806343 T
1 T
80806344 GCATGTTGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:80809223 original size:10 final size:9
Alignment explanation
Indices: 80809183--80809261 Score: 56
Period size: 9 Copynumber: 8.3 Consensus size: 9
80809173 ATACAATTAA
80809183 AATTTTCTAT
1 AATTTT-TAT
80809193 -ATTTTCTAT
1 AATTTT-TAT
*
80809202 ATTTTTTTAT
1 A-ATTTTTAT
80809212 AATTTTTAAT
1 AATTTTT-AT
80809222 AA--TTTAT
1 AATTTTTAT
80809229 AGATTTTTAAT
1 A-ATTTTT-AT
80809240 AATTTTTTAT
1 AA-TTTTTAT
*
80809250 GATTTTTAT
1 AATTTTTAT
80809259 AAT
1 AAT
80809262 CTATACTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
7 3 0.05
8 4 0.07
9 23 0.40
10 15 0.26
11 12 0.21
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (9 bp):
AATTTTTAT
Found at i:80809236 original size:18 final size:18
Alignment explanation
Indices: 80809207--80809266 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
80809197 TCTATATTTT
80809207 TTTATA-ATTTTTAATAA
1 TTTATAGATTTTTAATAA
80809224 TTTATAGATTTTTAATAA
1 TTTATAGATTTTTAATAA
*
80809242 TTTTTTATGATTTTT-ATAA
1 -TTTATA-GATTTTTAATAA
*
80809261 TCTATA
1 TTTATA
80809267 CTTTTTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 6 0.16
18 15 0.41
19 9 0.24
20 7 0.19
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (18 bp):
TTTATAGATTTTTAATAA
Found at i:80816306 original size:18 final size:18
Alignment explanation
Indices: 80816283--80816318 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
80816273 CCGTGAGTTA
80816283 GGACACAACGCCTTTAGT
1 GGACACAACGCCTTTAGT
80816301 GGACACAACGCCTTTAGT
1 GGACACAACGCCTTTAGT
80816319 TTTCGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (18 bp):
GGACACAACGCCTTTAGT
Found at i:80816682 original size:11 final size:11
Alignment explanation
Indices: 80816668--80816712 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
80816658 TAAATAAAGG
*
80816668 AATACTATAAT
1 AATAATATAAT
80816679 AATAATATAAT
1 AATAATATAAT
80816690 AATAATTATAAT
1 AATAA-TATAAT
80816702 -ATAATTATAAT
1 AATAA-TATAAT
80816713 CATGTTATAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 26 0.81
12 6 0.19
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (11 bp):
AATAATATAAT
Found at i:80816700 original size:17 final size:17
Alignment explanation
Indices: 80816674--80816712 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
80816664 AAGGAATACT
80816674 ATAATAATAATATAATA
1 ATAATAATAATATAATA
* *
80816691 ATAATTATAATATAATT
1 ATAATAATAATATAATA
80816708 ATAAT
1 ATAAT
80816713 CATGTTATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAATAATAATATAATA
Found at i:80818000 original size:38 final size:38
Alignment explanation
Indices: 80817925--80817999 Score: 134
Period size: 37 Copynumber: 2.0 Consensus size: 38
80817915 ATTTACTTCG
*
80817925 AAGTAAAAAATGAAAAATAAAAAAAAGACTATCTTTTT
1 AAGTAAAAAATGAAAAATAAAAAAAAGACTACCTTTTT
80817963 AAGTAAAAAATGAAAAAT-AAAAAAAGACTACCTTTTT
1 AAGTAAAAAATGAAAAATAAAAAAAAGACTACCTTTTT
80818000 TTCTTTTTGA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 18 0.50
38 18 0.50
ACGTcount: A:0.60, C:0.07, G:0.08, T:0.25
Consensus pattern (38 bp):
AAGTAAAAAATGAAAAATAAAAAAAAGACTACCTTTTT
Found at i:80821748 original size:6 final size:6
Alignment explanation
Indices: 80821732--80821821 Score: 108
Period size: 6 Copynumber: 15.0 Consensus size: 6
80821722 ATGAAAACAG
* * * * *
80821732 AATAAA CATAAA AATAAA AATAAA CATAAA AATAAA CATAAA GAGAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * *
80821780 AATAAA AATAAA GATAAA AATAAA AATAAA CATAAA GATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
80821822 TGGACTCAAT
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 71 1.00
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:80821755 original size:18 final size:18
Alignment explanation
Indices: 80821732--80821821 Score: 135
Period size: 18 Copynumber: 5.0 Consensus size: 18
80821722 ATGAAAACAG
80821732 AATAAACATAAAAATAAA
1 AATAAACATAAAAATAAA
80821750 AATAAACATAAAAATAAA
1 AATAAACATAAAAATAAA
* * *
80821768 CATAAAGAGAAAAATAAA
1 AATAAACATAAAAATAAA
*
80821786 AATAAAGATAAAAATAAA
1 AATAAACATAAAAATAAA
*
80821804 AATAAACATAAAGATAAA
1 AATAAACATAAAAATAAA
80821822 TGGACTCAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (18 bp):
AATAAACATAAAAATAAA
Found at i:80824744 original size:38 final size:38
Alignment explanation
Indices: 80824664--80824850 Score: 223
Period size: 38 Copynumber: 4.8 Consensus size: 38
80824654 TCTAGTCACT
* * *
80824664 AGCACAAAACCTGCGGGACTTTAAGCTCAGATATAATACC
1 AGCACGAAGCCTGCGGGA-TTTAA-CCCAGATATAATACC
* * *
80824704 AGCACTAGGCCTGCGGGATTTAACCCGGATATAATACC
1 AGCACGAAGCCTGCGGGATTTAACCCAGATATAATACC
* *
80824742 AGCACGAAGCCTGCGGGATTTAACCCGGATATATTACC
1 AGCACGAAGCCTGCGGGATTTAACCCAGATATAATACC
*
80824780 AGCACGAAGCCTGCGGGATTTAACCCAGATATAATTCC
1 AGCACGAAGCCTGCGGGATTTAACCCAGATATAATACC
* *
80824818 AGCA-TATAGCCTGCGGGTCTTTAAGCCCAGATA
1 AGCACGA-AGCCTGCGGG-ATTTAA-CCCAGATA
80824851 CACATCAAAT
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
37 1 0.01
38 97 0.74
39 10 0.08
40 23 0.18
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
AGCACGAAGCCTGCGGGATTTAACCCAGATATAATACC
Found at i:80824783 original size:76 final size:78
Alignment explanation
Indices: 80824664--80824850 Score: 252
Period size: 76 Copynumber: 2.4 Consensus size: 78
80824654 TCTAGTCACT
* * * *
80824664 AGCACAAAACCTGCGGGACTTTAAGCTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAACC
1 AGCACAAAGCCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
*
80824729 CGGATATAATACC
66 CAGATATAATACC
* * *
80824742 AGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACC
1 AGCACAAAGCCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
*
80824805 CAGATATAATTCC
66 CAGATATAATACC
* * *
80824818 AGCATATAGCCTGCGGGTCTTTAAGCCCAGATA
1 AGCACAAAGCCTGCGGGACTTTAAGCCCAGATA
80824851 CACATCAAAT
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
76 60 0.65
77 10 0.11
78 23 0.25
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (78 bp):
AGCACAAAGCCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
CAGATATAATACC
Found at i:80831724 original size:96 final size:92
Alignment explanation
Indices: 80831503--80831733 Score: 270
Period size: 96 Copynumber: 2.5 Consensus size: 92
80831493 GGACTTGTCA
*
80831503 CTTCAATCTACTCCACTGTAACTTCAGAGAGATAAGATTTGCT-ACGGTAGATTTAATCTGACAT
1 CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGATTTG-TAACGGTAGATTTAATCTGACAT
* *
80831567 ACTGCAACTTCAGAGGTATATGATTTAT
65 ACTGCAACTTCAGAGGAATAAGATTTAT
* * * * * * *
80831595 TTTCAATTTATTCCACTATAACTTCAGGGAGATAAGATTTGTAACTTGTAGTTTTAATCTGTTC-
1 CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGATTTGTAAC-GGTAGATTTAATCTG-ACA
*
80831659 TACTGTAACTTCAG-GGAAATAAGATTTGCTAT
64 TACTGCAACTTCAGAGG-AATAAGA-TT--TAT
*
80831691 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA
1 CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGATTTGTA
80831734 TCTTCAATAT
Statistics
Matches: 116, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
91 1 0.01
92 40 0.34
93 31 0.27
94 3 0.03
96 41 0.35
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (92 bp):
CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGATTTGTAACGGTAGATTTAATCTGACATA
CTGCAACTTCAGAGGAATAAGATTTAT
Found at i:80831751 original size:44 final size:44
Alignment explanation
Indices: 80831660--80831818 Score: 201
Period size: 44 Copynumber: 3.6 Consensus size: 44
80831650 AATCTGTTCT
* *
80831660 ACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTACTCC
1 ACTGCAACTTCAGGGAGATAAGATTTG-TATCTTCAATCTACTCC
* *
80831705 ACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATATGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTACTCC
* ** * *
80831749 ACTGCAACTTCAGGGAGATAAGACTCATATCATCAATCTACTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTACTCC
* * *
80831793 ACTACAACTTCAAGGAGATGAGATTT
1 ACTGCAACTTCAGGGAGATAAGATTT
80831819 ATGGTTTCAT
Statistics
Matches: 98, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
44 73 0.74
45 25 0.26
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTACTCC
Found at i:80838044 original size:14 final size:14
Alignment explanation
Indices: 80838027--80838066 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
80838017 AAGAATACTG
80838027 TAATAATAATATAA
1 TAATAATAATATAA
*
80838041 TAATTATAATATAA
1 TAATAATAATATAA
* *
80838055 TTATAATCATAT
1 TAATAATAATAT
80838067 TATAGTGATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
TAATAATAATATAA
Found at i:80838408 original size:31 final size:31
Alignment explanation
Indices: 80838346--80838408 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
80838336 TAATAAAGAC
* *
80838346 ATAAAAGAAAAAAAATAAATGATCCATAAAA
1 ATAAAAGAAAAAAAATAAATGATCAAAAAAA
* *
80838377 ATAAAATAAAAAAAATTAAAT-ATTAAAAAAA
1 ATAAAAGAAAAAAAA-TAAATGATCAAAAAAA
80838408 A
1 A
80838409 GTGAAGGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 22 0.81
32 5 0.19
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (31 bp):
ATAAAAGAAAAAAAATAAATGATCAAAAAAA
Found at i:80849331 original size:16 final size:16
Alignment explanation
Indices: 80849310--80849345 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
80849300 TTTGGTTTGT
*
80849310 TGTATTGGATTAGCGG
1 TGTATTGGATTAGAGG
80849326 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
80849342 TGTA
1 TGTA
80849346 ATGGCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.03, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:80849531 original size:18 final size:16
Alignment explanation
Indices: 80849494--80849538 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
80849484 TAGATAAATG
80849494 ATTTAATAAAATATAT
1 ATTTAATAAAATATAT
80849510 -TTTAATTAAAATATAT
1 ATTTAA-TAAAATATAT
80849526 AATTTAATAAAAT
1 -ATTTAATAAAAT
80849539 TCTTAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 5 0.19
16 10 0.38
17 6 0.23
18 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTTAATAAAATATAT
Found at i:80849631 original size:16 final size:14
Alignment explanation
Indices: 80849601--80849652 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
80849591 CTATAAAATA
80849601 TAATTTAAAATAAT
1 TAATTTAAAATAAT
80849615 TAATATTAAATATAAT
1 TAAT-TTAAA-ATAAT
* *
80849631 TTAGTTAAAAT-AT
1 TAATTTAAAATAAT
80849644 ATAATTTAA
1 -TAATTTAA
80849653 TAAAATTCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
13 2 0.06
14 12 0.39
15 10 0.32
16 7 0.23
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
TAATTTAAAATAAT
Found at i:80849707 original size:117 final size:120
Alignment explanation
Indices: 80849502--80849718 Score: 361
Period size: 117 Copynumber: 1.8 Consensus size: 120
80849492 TGATTTAATA
*
80849502 AAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAAT
1 AAATATAATTTAATTAAAATATATAATTTAATAAAATTC-TAATAATCAATATTCTTATATGAAT
80849567 TTACTAAAATCATAATATATAATACTAT-AAAATATAATTTAAAATAATTAATATT
65 TTACTAAAATCATAATATATAATACTATGAAAATATAATTTAAAATAATTAATATT
*
80849622 AAATATAATTTAGTTAAAATATATAATTTAATAAAATTC-AAT-AT-AATTATTCTTATATGAAT
1 AAATATAATTTAATTAAAATATATAATTTAATAAAATTCTAATAATCAA-TATTCTTATATGAAT
*
80849684 TTACTAAAATCATATTATATAATACTATGAAAATA
65 TTACTAAAATCATAATATATAATACTATGAAAATA
80849719 AAATATAATC
Statistics
Matches: 92, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
116 2 0.02
117 44 0.48
118 9 0.10
120 37 0.40
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (120 bp):
AAATATAATTTAATTAAAATATATAATTTAATAAAATTCTAATAATCAATATTCTTATATGAATT
TACTAAAATCATAATATATAATACTATGAAAATATAATTTAAAATAATTAATATT
Found at i:80852367 original size:5 final size:5
Alignment explanation
Indices: 80852359--80852389 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
80852349 TCGATTTTAC
80852359 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
80852390 ACAGGGAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:80853259 original size:59 final size:60
Alignment explanation
Indices: 80853164--80853279 Score: 182
Period size: 59 Copynumber: 1.9 Consensus size: 60
80853154 GCACTCAAAC
* *
80853164 TTTCAGTAGAATCTAGAGATTATATCTCACCGAGGACAATATCAAACTTATT-AAAGAAT
1 TTTCAGTAGAATCTAGAGATTAAATCTCACCAAGGACAATATCAAACTTATTGAAAGAAT
*
80853223 TTTCAGTAGAATCTAGAGATTAAA-CTTCATCAAGGACAATATCAAACTTATTGAAAG
1 TTTCAGTAGAATCTAGAGATTAAATC-TCACCAAGGACAATATCAAACTTATTGAAAG
80853280 GTCGTCGACT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
58 1 0.02
59 47 0.90
60 4 0.08
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (60 bp):
TTTCAGTAGAATCTAGAGATTAAATCTCACCAAGGACAATATCAAACTTATTGAAAGAAT
Found at i:80854221 original size:21 final size:21
Alignment explanation
Indices: 80854189--80854266 Score: 90
Period size: 21 Copynumber: 3.9 Consensus size: 21
80854179 TGTTTGACTA
*
80854189 TTCTTCTTCCTTTTTAATTCT
1 TTCTTCTACCTTTTTAATTCT
* *
80854210 TTTTTCTACC--TTT-ATGCT
1 TTCTTCTACCTTTTTAATTCT
*
80854228 TTCTTCTTCCTTTTTAATTCT
1 TTCTTCTACCTTTTTAATTCT
*
80854249 TTCTTCTACCTTTATAAT
1 TTCTTCTACCTTTTTAAT
80854267 GTTTAACGAT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
18 12 0.26
19 3 0.07
20 3 0.07
21 28 0.61
ACGTcount: A:0.13, C:0.23, G:0.01, T:0.63
Consensus pattern (21 bp):
TTCTTCTACCTTTTTAATTCT
Found at i:80854243 original size:39 final size:39
Alignment explanation
Indices: 80854189--80854263 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
80854179 TGTTTGACTA
*
80854189 TTCTTCTTCCTTTTTAATTCTTTTTTCTACCTTTATGCT
1 TTCTTCTTCCTTTTTAATTCTTTCTTCTACCTTTATGCT
80854228 TTCTTCTTCCTTTTTAATTCTTTCTTCTACCTTTAT
1 TTCTTCTTCCTTTTTAATTCTTTCTTCTACCTTTAT
80854264 AATGTTTAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.11, C:0.24, G:0.01, T:0.64
Consensus pattern (39 bp):
TTCTTCTTCCTTTTTAATTCTTTCTTCTACCTTTATGCT
Found at i:80854952 original size:21 final size:22
Alignment explanation
Indices: 80854910--80854958 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 22
80854900 TAATTTAGAC
*
80854910 TCAATTGTTTAATTTTTTTCAT
1 TCAATTGTTTAATTTCTTTCAT
80854932 TCAATTGTTTAA-TTCTTTCAT
1 TCAATTGTTTAATTTCTTTCAT
80854953 TCAATT
1 TCAATT
80854959 AAATAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.24, C:0.12, G:0.04, T:0.59
Consensus pattern (22 bp):
TCAATTGTTTAATTTCTTTCAT
Found at i:80854965 original size:21 final size:21
Alignment explanation
Indices: 80854926--80854965 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80854916 GTTTAATTTT
***
80854926 TTTCATTCAATTGTTTAATTC
1 TTTCATTCAATTAAATAATTC
80854947 TTTCATTCAATTAAATAAT
1 TTTCATTCAATTAAATAAT
80854966 AATACAAAGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.53
Consensus pattern (21 bp):
TTTCATTCAATTAAATAATTC
Found at i:80857485 original size:16 final size:16
Alignment explanation
Indices: 80857457--80857499 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
80857447 ATTAAGTTCG
80857457 ATTAATT-AATTAAT-
1 ATTAATTAAATTAATC
*
80857471 TTTAAATTAAATTAATC
1 ATT-AATTAAATTAATC
80857488 ATTAATTAAATT
1 ATTAATTAAATT
80857500 TTTAAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 2 0.08
15 4 0.17
16 16 0.67
17 2 0.08
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTAATTAAATTAATC
Found at i:80863249 original size:10 final size:10
Alignment explanation
Indices: 80863234--80863284 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
80863224 CATTGTTTAC
80863234 AATAATTTTT
1 AATAATTTTT
80863244 AATAATTTATT
1 AATAATTT-TT
*
80863255 -ATAATTCTT
1 AATAATTTTT
*
80863264 AACAATTTTT
1 AATAATTTTT
80863274 AA-ATATTTTT
1 AATA-ATTTTT
80863284 A
1 A
80863285 TATTTATTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
9 3 0.09
10 30 0.86
11 2 0.06
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (10 bp):
AATAATTTTT
Found at i:80863258 original size:20 final size:20
Alignment explanation
Indices: 80863235--80863292 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
80863225 ATTGTTTACA
80863235 ATAATTTTTAATAATTTATT
1 ATAATTTTTAATAATTTATT
* *
80863255 ATAATTCTTAACAATTT-TT
1 ATAATTTTTAATAATTTATT
*
80863274 A-AATATTTTTAT-ATTTATT
1 ATAAT-TTTTAATAATTTATT
80863293 TGAAAACTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 7 0.23
19 9 0.29
20 15 0.48
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
ATAATTTTTAATAATTTATT
Found at i:80863845 original size:20 final size:21
Alignment explanation
Indices: 80863807--80863846 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
80863797 ACAATTATTG
**
80863807 AAAAATCTAAAATTTAAAAAA
1 AAAAATCTAAAATGAAAAAAA
80863828 AAAAAT-TAAAATGAAAAAA
1 AAAAATCTAAAATGAAAAAA
80863847 TTGATGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.20
Consensus pattern (21 bp):
AAAAATCTAAAATGAAAAAAA
Found at i:80875887 original size:19 final size:18
Alignment explanation
Indices: 80875837--80875893 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
80875827 CTGATAAATT
*
80875837 ATTTTAAAAATA-ATAAGA
1 ATTTTAAAAATAGA-AAAA
80875855 ATTTTAAAAA-AGAAAAA
1 ATTTTAAAAATAGAAAAA
*
80875872 ATTGTTAAAAATAGAATAA
1 ATT-TTAAAAATAGAAAAA
80875891 ATT
1 ATT
80875894 AATTCAACTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
17 7 0.21
18 18 0.53
19 9 0.26
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (18 bp):
ATTTTAAAAATAGAAAAA
Found at i:80886325 original size:29 final size:24
Alignment explanation
Indices: 80886281--80886337 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 24
80886271 GAAATATACG
80886281 ATATATAATATTGAAAGTAAATACATA
1 ATATATAATATTGAAA-T-AAT-CATA
80886308 ATATATACATATTAGAAATAATCATA
1 ATATATA-ATATT-GAAATAATCATA
80886334 ATAT
1 ATAT
80886338 TAGAAACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 8 0.29
27 10 0.36
28 6 0.21
29 4 0.14
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35
Consensus pattern (24 bp):
ATATATAATATTGAAATAATCATA
Found at i:80887231 original size:79 final size:80
Alignment explanation
Indices: 80887046--80887248 Score: 295
Period size: 79 Copynumber: 2.5 Consensus size: 80
80887036 AAGTTGATTT
* * * *
80887046 CACTCCCCCCATGCTACTTTG-TTTTATTATTAATTAAAAACTACTCCCCCATACTACTTTGTTT
1 CACT-CCCCCATACTATTTTGTTTTTATTATTAATT-AAAACCATTCCCCCATACTACTTTGTTT
80887110 TATTATTAATTAAAAAC
64 TATTATTAATTAAAAAC
* *
80887127 TACTCCCCTATACTATTTTGTTTTTATTATTAATTAAAACCATTCCCCCATACTA-TTTGTTTTT
1 CACTCCCCCATACTATTTTGTTTTTATTATTAATTAAAACCATTCCCCCATACTACTTTG-TTTT
80887191 ATTATTAATT-AAAAC
65 ATTATTAATTAAAAAC
*
80887206 CATTCCCCCATACTATTTTGTTTTTATTATTAATTAAAACCAT
1 CACTCCCCCATACTATTTTGTTTTTATTATTAATTAAAACCAT
80887249 ACTTTATTTT
Statistics
Matches: 111, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
79 49 0.44
80 45 0.41
81 17 0.15
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.45
Consensus pattern (80 bp):
CACTCCCCCATACTATTTTGTTTTTATTATTAATTAAAACCATTCCCCCATACTACTTTGTTTTA
TTATTAATTAAAAAC
Found at i:80887245 original size:40 final size:40
Alignment explanation
Indices: 80887051--80887248 Score: 285
Period size: 40 Copynumber: 5.0 Consensus size: 40
80887041 GATTTCACTC
* * *
80887051 CCCCCATGCTACTTTG-TTTTATTATTAATTAAAAACTACT
1 CCCCCATACTACTTTGTTTTTATTATTAATT-AAAACCATT
* *
80887091 CCCCCATACTACTTTG-TTTTATTATTAATTAAAAACTACT
1 CCCCCATACTACTTTGTTTTTATTATTAATT-AAAACCATT
* *
80887131 CCCCTATACTATTTTGTTTTTATTATTAATTAAAACCATT
1 CCCCCATACTACTTTGTTTTTATTATTAATTAAAACCATT
80887171 CCCCCATACTA-TTTGTTTTTATTATTAATTAAAACCATT
1 CCCCCATACTACTTTGTTTTTATTATTAATTAAAACCATT
*
80887210 CCCCCATACTATTTTGTTTTTATTATTAATTAAAACCAT
1 CCCCCATACTACTTTGTTTTTATTATTAATTAAAACCAT
80887249 ACTTTATTTT
Statistics
Matches: 150, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
39 39 0.26
40 97 0.65
41 14 0.09
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.45
Consensus pattern (40 bp):
CCCCCATACTACTTTGTTTTTATTATTAATTAAAACCATT
Found at i:80888376 original size:13 final size:13
Alignment explanation
Indices: 80888358--80888382 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80888348 GAGTTTTGAG
80888358 TTCTTCGATCTGC
1 TTCTTCGATCTGC
80888371 TTCTTCGATCTG
1 TTCTTCGATCTG
80888383 TTCCCTATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.16, T:0.48
Consensus pattern (13 bp):
TTCTTCGATCTGC
Found at i:80888429 original size:44 final size:44
Alignment explanation
Indices: 80888365--80888711 Score: 350
Period size: 44 Copynumber: 7.9 Consensus size: 44
80888355 GAGTTCTTCG
** *
80888365 ATCTGCT-TCTTCGATCTGTTCCCTATAAATACAAGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
80888408 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATG-C-T
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
80888450 ATGCTGAAATCTTCGATTTGCTTCACTGTAAGCACAGGAATGTCAA
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
80888496 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
80888540 ATCTGCTATTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTA-TCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** ** * * * *
80888583 ATGCTGAAATCTTCGATCTGCTTTACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
80888629 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
*
80888673 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGAT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
80888712 ACCATGCTGA
Statistics
Matches: 249, Mismatches: 40, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
42 2 0.01
43 31 0.12
44 153 0.61
45 59 0.24
46 4 0.02
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:80888521 original size:88 final size:87
Alignment explanation
Indices: 80888372--80888768 Score: 292
Period size: 88 Copynumber: 4.5 Consensus size: 87
80888362 TCGATCTGCT
* **
80888372 TCTTCGATCTGTTCCCTATAAATACAAGG-ATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
1 TCTTCGATCTGTTCACTATAAGCAC-AGGAATG-CAAATCTGCTATCTTCAACTTGTTCCCTATA
* *
80888436 AACACAGGGATG-C-TATGCTGAAA
64 AGCACAGGGATGCCAAAT-CTGAAA
* * *
80888459 TCTTCGATTTGCTTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGA-TCTGTTCCCTAT
1 TCTTCGATCTG-TTCACTATAAGCACAGGAATG-CAAATCTGCTATCTTCAACT-TGTTCCCTAT
* *
80888523 AAGCACAGGGATGCCAAATCTGCTAT
63 AAGCACAGGGATGCCAAATCTG-AAA
* * * * * ** * ** *
80888549 TTTTC-AACTTGTTCCCTATAAGCACAGGGATGC-CATGCTGAAATCTTCGA-TCTGCTTTACTG
1 TCTTCGATC-TGTTCACTATAAGCACAGGAATGCAAAT-CTGCTATCTTCAACT-TG-TTCCCTA
* * * **
80888611 TAAGCACAGGAATGTCAGATCTGCTA
62 TAAGCACAGGGATGCCAAATCTGAAA
* *
80888637 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATCTGTTCACTATAAGCACAGGAATG-CAAATCTGCTATCTTCAACTTGTTCCCTATAA
*
80888702 GCACAGGGATACC--ATGCTGAAA
65 GCACAGGGATGCCAAAT-CTGAAA
* * * *
80888724 TCTTCGATCTGCTTCACTGTAA-CTCAGGAAGGCGATATCTGCTAT
1 TCTTCGATCTG-TTCACTATAAGCACAGGAATGC-AAATCTGCTAT
80888769 ATTTGATCTA
Statistics
Matches: 245, Mismatches: 49, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
86 3 0.01
87 48 0.20
88 120 0.49
89 62 0.25
90 12 0.05
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (87 bp):
TCTTCGATCTGTTCACTATAAGCACAGGAATGCAAATCTGCTATCTTCAACTTGTTCCCTATAAG
CACAGGGATGCCAAATCTGAAA
Found at i:80888611 original size:133 final size:132
Alignment explanation
Indices: 80888365--80888753 Score: 656
Period size: 133 Copynumber: 3.0 Consensus size: 132
80888355 GAGTTCTTCG
** *
80888365 ATCTGCT-TCTTCGATCTGTTCCCTATAAATACAAGGATGCCAAATCTGCTATCTTCAACTTGTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
* * *
80888429 CCCTATAAACACAGGGATGCTATGCTGAAATCTTCGATTTGCTTCACTGTAAGCACAGGAATGTC
66 CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
80888494 AA
131 AA
*
80888496 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTTCAACTTGT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTA-TCTTCAACTTGT
*
80888561 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTTACTGTAAGCACAGGAATGT
65 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
*
80888626 CAG
130 CAA
80888629 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
* *
80888694 CCCTATAAGCACAGGGATACCATGCTGAAATCTTCGATCTGCTTCACTGTAA-CTCAGGAA
66 CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
80888754 GGCGATATCT
Statistics
Matches: 243, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
131 14 0.06
132 103 0.42
133 126 0.52
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (132 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
AA
Found at i:80889184 original size:205 final size:205
Alignment explanation
Indices: 80888817--80889795 Score: 1511
Period size: 205 Copynumber: 4.8 Consensus size: 205
80888807 CTATTTCTTT
* * * * * * * * *
80888817 GATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTTAACATAAGCACGTGA
1 GATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACGTGA
* * * * *
80888882 AAGCCAAATCAACTATG-ATTCGATTTGCTCCTTGTAAGCATAAGGATGCCAAAACATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
* * *
80888946 CCGCTTCAGCAT-AAA-CATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
131 CTGCTTCAG--TGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
80889009 ATGCCAAACTTC
194 ATGCCAAACTTC
* * *
80889021 GAGTCGTTCTCTGACGATACAGAGATGACAAATCATCTTAGATTTGCTTTC-TCGTAATCACGTG
1 GATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGC-TTCATCGTAATCACGTG
**
80889085 AAAGCCAAATCAGCTATGTCTTCGATTTTTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGA
65 AAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGA
* *
80889150 TCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTTTCCATCAAAGTAAAGA
130 TCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGA
* *
80889215 TGGCAAGCTTC
195 TGCCAAACTTC
*
80889226 GATTCATTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACGTGA
1 GATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACGTGA
* *
80889291 AAGCCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTAGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
* * *
80889356 TTGCTTTAGTGAAATCATCTGAAGGCGAGATCTACTATGTGTCTGCTCTCCATCAAAGTGAAGAT
131 CTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGAT
80889421 GCCAAACTTC
196 GCCAAACTTC
* * *
80889431 GATTCGTTCTCTGACAATACAGAGAGGACAAATCATCTTAGATTTACTTCATCGTAATCATGTGA
1 GATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACGTGA
* *
80889496 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTATAAACACAAGGATGCCAAACCATCTTAGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
*
80889561 CTGCTTCAGTGAAATCATCTAAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGAT
131 CTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGAT
80889626 GCCAAACTTC
196 GCCAAACTTC
80889636 GATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACGTGA
1 GATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACGTGA
* *
80889701 AAGCCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAACACAAAGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
*
80889766 CTGCTTCAGT-ATAA-CATCTGAAGGCCAGAT
131 CTGCTTCAGTGA-AATCATCTGAAGGCGAGAT
80889796 TTGTTATGCT
Statistics
Matches: 711, Mismatches: 58, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
203 1 0.00
204 89 0.13
205 621 0.87
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (205 bp):
GATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
CTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGAT
GCCAAACTTC
Found at i:80897835 original size:15 final size:14
Alignment explanation
Indices: 80897793--80897842 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
80897783 ATAACTTTGA
*
80897793 ATGCAAATGATGTG
1 ATGCAAATGATGAG
80897807 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
80897822 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
80897836 ATGCAAA
1 ATGCAAA
80897843 AAGAATATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:80900460 original size:37 final size:40
Alignment explanation
Indices: 80900418--80900513 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 40
80900408 AAGATGGTTA
80900418 TTAATATTAATAATAAAACAAAT-AT-TGGGGAAT-GATT
1 TTAATATTAATAATAAAACAAATAATCTGGGGAATAGATT
* * *
80900455 TTAATAAT-ATAA-ATAACAAATAGATCTGGGGAATAGGTT
1 TTAATATTAATAATAAAACAAATA-ATCTGGGGAATAGATT
*
80900494 TTTA-ATTAA-AATAAAACAAA
1 TTAATATTAATAATAAAACAAA
80900514 AAGTATGACG
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
35 8 0.17
36 4 0.09
37 9 0.19
38 12 0.26
39 14 0.30
ACGTcount: A:0.51, C:0.04, G:0.12, T:0.32
Consensus pattern (40 bp):
TTAATATTAATAATAAAACAAATAATCTGGGGAATAGATT
Found at i:80908122 original size:13 final size:15
Alignment explanation
Indices: 80908092--80908122 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80908082 TTCCAGATTT
80908092 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
80908107 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
80908122 T
1 T
80908123 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:80908206 original size:15 final size:14
Alignment explanation
Indices: 80908164--80908213 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
80908154 ATAACTTTGA
*
80908164 ATGCAAATGATGTG
1 ATGCAAATGATGAG
80908178 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
80908193 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
80908207 ATGCAAA
1 ATGCAAA
80908214 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:80911851 original size:29 final size:24
Alignment explanation
Indices: 80911807--80911863 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 24
80911797 GAAATATGCG
80911807 ATATATAATATTGAAAGTAAATACATA
1 ATATATAATATTGAAA-T-AAT-CATA
80911834 ATATATACATATTAGAAATAATCATA
1 ATATATA-ATATT-GAAATAATCATA
80911860 ATAT
1 ATAT
80911864 TAGAAACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 8 0.29
27 10 0.36
28 6 0.21
29 4 0.14
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35
Consensus pattern (24 bp):
ATATATAATATTGAAATAATCATA
Found at i:80912619 original size:40 final size:41
Alignment explanation
Indices: 80912575--80912728 Score: 244
Period size: 40 Copynumber: 3.9 Consensus size: 41
80912565 GATTTCACTC
* * *
80912575 CCCCCATGCTACTTTG-TTTTATTATTAATTAAAAACTACT
1 CCCCCATACTATTTTGTTTTTATTATTAATTAAAAACTATT
80912615 CCCCCATACTATTTTG-TTTTATTATTAATT-AAAACTATT
1 CCCCCATACTATTTTGTTTTTATTATTAATTAAAAACTATT
*
80912654 CCCCCATACTATTTTGTTTTTATTATTAATTAAAATC-ATT
1 CCCCCATACTATTTTGTTTTTATTATTAATTAAAAACTATT
80912694 CCCCCATACTATTTTGTTTTTATTATTAATTAAAA
1 CCCCCATACTATTTTGTTTTTATTATTAATTAAAA
80912729 CCATACTTTA
Statistics
Matches: 108, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
39 24 0.22
40 80 0.74
41 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.03, T:0.47
Consensus pattern (41 bp):
CCCCCATACTATTTTGTTTTTATTATTAATTAAAAACTATT
Found at i:80912769 original size:79 final size:79
Alignment explanation
Indices: 80912576--80912732 Score: 201
Period size: 79 Copynumber: 2.0 Consensus size: 79
80912566 ATTTCACTCC
* * * *
80912576 CCCCATGCTACTTTG-TTTTATTATTAATTAAAAA-CTACTCCCCCATACTATTTTGTTTTATTA
1 CCCCATACTATTTTGTTTTTATCATTAA-TAAAAATC-ATTCCCCCATACTATTTTGTTTTATTA
* *
80912639 TTAATTAAAACTATTC
64 TTAATTAAAACCATTA
* *
80912655 CCCCATACTATTTTGTTTTTATTATTAATTAAAATCATTCCCCCATACTATTTTGTTTTTATTAT
1 CCCCATACTATTTTGTTTTTATCATTAATAAAAATCATTCCCCCATACTATTTTG-TTTTATTAT
80912720 TAATTAAAACCAT
65 TAATTAAAACCAT
80912733 ACTTTATTTT
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
79 36 0.51
80 34 0.49
ACGTcount: A:0.31, C:0.19, G:0.03, T:0.47
Consensus pattern (79 bp):
CCCCATACTATTTTGTTTTTATCATTAATAAAAATCATTCCCCCATACTATTTTGTTTTATTATT
AATTAAAACCATTA
Found at i:80915141 original size:18 final size:19
Alignment explanation
Indices: 80915105--80915144 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
80915095 GATTGTGTTT
*
80915105 TTTTTTTTCAAAATTCATTG
1 TTTTTCTTCAAAA-TCATTG
80915125 TTTTTCTTCAAAA-CATTG
1 TTTTTCTTCAAAATCATTG
80915143 TT
1 TT
80915145 CTTTTATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
20 12 0.63
ACGTcount: A:0.25, C:0.12, G:0.05, T:0.57
Consensus pattern (19 bp):
TTTTTCTTCAAAATCATTG
Found at i:80926935 original size:24 final size:21
Alignment explanation
Indices: 80926892--80926955 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 21
80926882 TATATATAAG
**
80926892 TTTTTATTTTAATTCCTATAAT
1 TTTTTATTTTAATTTTTAT-AT
80926914 TTGGTTTATTTTAATTTTTATAT
1 TT--TTTATTTTAATTTTTATAT
80926937 TTTTTGAATTTTAATTTTT
1 TTTTT--ATTTTAATTTTT
80926956 TTTAAAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
21 3 0.08
22 2 0.06
23 16 0.44
24 15 0.42
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTATTTTAATTTTTATAT
Found at i:80926957 original size:17 final size:16
Alignment explanation
Indices: 80926922--80926960 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
80926912 ATTTGGTTTA
*
80926922 TTTTAATTTTTATATT
1 TTTTAATTTTAATATT
*
80926938 TTTTGAATTTTAATTTT
1 TTTT-AATTTTAATATT
80926955 TTTTAA
1 TTTTAA
80926961 AATTTTAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (16 bp):
TTTTAATTTTAATATT
Found at i:80933460 original size:12 final size:12
Alignment explanation
Indices: 80933443--80933507 Score: 64
Period size: 12 Copynumber: 5.6 Consensus size: 12
80933433 TCTAAATACA
80933443 ATATATGCATAT
1 ATATATGCATAT
80933455 ATATATGCATAT
1 ATATATGCATAT
*
80933467 ATATATGTATAT
1 ATATATGCATAT
* * *
80933479 TTCTAATACATAT
1 ATAT-ATGCATAT
80933492 ATATA-G-ATAT
1 ATATATGCATAT
80933502 AT-TATG
1 ATATATG
80933508 TACATACTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
9 2 0.05
10 7 0.16
12 26 0.60
13 8 0.19
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.45
Consensus pattern (12 bp):
ATATATGCATAT
Found at i:80934079 original size:6 final size:6
Alignment explanation
Indices: 80934064--80934101 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
80934054 TTACCTGTAT
* *
80934064 TATTAC TATTAA TATTAT TATTAC TATTAC TA-TAC TAT
1 TATTAC TATTAC TATTAC TATTAC TATTAC TATTAC TAT
80934102 CATTCTTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (6 bp):
TATTAC
Found at i:80939157 original size:14 final size:14
Alignment explanation
Indices: 80939138--80939169 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
80939128 GGAAAACTCT
*
80939138 AAGAGGTCAGCTCC
1 AAGAGGTCAGCACC
80939152 AAGAGGTCAGCACC
1 AAGAGGTCAGCACC
80939166 AAGA
1 AAGA
80939170 AAGAAAGAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.25, G:0.28, T:0.09
Consensus pattern (14 bp):
AAGAGGTCAGCACC
Found at i:80942623 original size:21 final size:21
Alignment explanation
Indices: 80942584--80942623 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80942574 TGTGCAAGTC
* *
80942584 TTGAGGAAATTATTTTTGAGG
1 TTGAGGAAATTACTGTTGAGG
*
80942605 TTGAGGAAATTCCTGTTGA
1 TTGAGGAAATTACTGTTGA
80942624 AACTCAATCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.05, G:0.28, T:0.40
Consensus pattern (21 bp):
TTGAGGAAATTACTGTTGAGG
Found at i:80946188 original size:44 final size:44
Alignment explanation
Indices: 80946127--80946640 Score: 297
Period size: 44 Copynumber: 11.7 Consensus size: 44
80946117 CTGAATTTAT
*
80946127 AGATCTTAACCCCCTAAGCAGTAGGGAAACGGATCGAAGA-CGA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATCGA
* * * * * *
80946170 ATGGTCTTAAACCCCTAAGCAGTAGGGTAACAGA-CCAA-ATTGC
1 A-GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATCGA
*** * *
80946213 AGATCTTATTTCCCTAAGCAGTAGTGG-AGCAGATCGAAGATTGAA
1 AGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGATCG-A
* * * * * * *
80946258 AAACCTTAACCCCCTAAACAGTAGGGTAACAGGTTGAA-TTC-A
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATCGA
* * * *
80946300 CAAATCTCAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTAAC-A
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAA-G-ATCGA
* * * *
80946346 AG-CCTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTGA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATCGA
* * * * *
80946389 CATATCTTAACCCCCTAAGTAGTAGGGAAACAGAT-TAAAAGCGA
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATCGA
* * * * * *
80946433 TG-GCTTTAAACCCCTAAGCAATA-GGATAACAG-GCTGAAGATTGA
1 AGATC-TTAACCCCCTAAGCAGTAGGGA-AACAGATC-GAAGATCGA
80946477 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-CGA
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATCGA
** * * * ** *
80946521 AGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAATTTC-C
1 A-GATCTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATCGA
* * * *
80946565 ATATCTTAACCCCCTAAGTAGTAGGGAAACAGGTCGAA-AGCGA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATCGA
* * *
80946608 CAAATCTTAACCCCCTATGCAGTAGGGTAACAG
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAG
80946641 GCTGAAAATT
Statistics
Matches: 351, Mismatches: 90, Indels: 59
0.70 0.18 0.12
Matches are distributed among these distances:
42 32 0.09
43 95 0.27
44 136 0.39
45 81 0.23
46 7 0.02
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (44 bp):
AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATCGA
Found at i:80946388 original size:132 final size:131
Alignment explanation
Indices: 80946248--80946646 Score: 355
Period size: 132 Copynumber: 3.0 Consensus size: 131
80946238 GGAGCAGATC
* * *
80946248 GAAGATTGAAAAACCTTAACCCCCTAAACAGTAGGGTAACAGGTTGAATTCACAAATCTCAACCC
1 GAAGATTGAAAAACCTTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTC-CATATCTTAACCC
*
80946313 CCTAAGCAGTAGGGAAACAGATC-AAAG-GTAACAAGCCTTAACCCCCTAAGCAGTAGGGTAACA
65 CCTAAGCAGTAGGGAAACAG-TCGAAAGAGT-ACAAGTCTTAACCCCCTAAGCAGTAGGGTAACA
80946376 GGCT
128 GGCT
* * * * * * * ** * ** *
80946380 GAAGATTGACATATCTTAACCCCCTAAGTAGTAGGGAAACAGATTAAAAGCGATGGCTTTAAACC
1 GAAGATTGAAAAACCTTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTCCATATC-TTAACCC
* * * *
80946445 CCTAAGCAATA-GGATAACAGGCTG-AAGATTGAC-AGATCTTAACCCCCTAAGCAGTAGGGAAA
65 CCTAAGCAGTAGGGA-AACAGTC-GAAAGAGT-ACAAG-TCTTAACCCCCTAAGCAGTAGGGTAA
*
80946507 CA-GAT
126 CAGGCT
* *** * *
80946512 CGAAGA-CGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCATATCTTAACC
1 -GAAGATTGAAAAACCTTAACCCCCTAAGCAGTAGGGTAACAGGTTGAA-TTCCATATCTTAACC
* * * *
80946576 CCCTAAGTAGTAGGGAAACAGGTCGAAAGCG-ACAAATCTTAACCCCCTATGCAGTAGGGTAACA
64 CCCTAAGCAGTAGGGAAACA-GTCGAAAGAGTACAAGTCTTAACCCCCTAAGCAGTAGGGTAACA
80946640 GGCT
128 GGCT
80946644 GAA
1 GAA
80946647 AATTACAAAT
Statistics
Matches: 204, Mismatches: 50, Indels: 27
0.73 0.18 0.10
Matches are distributed among these distances:
131 37 0.18
132 121 0.59
133 46 0.23
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.19
Consensus pattern (131 bp):
GAAGATTGAAAAACCTTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTCCATATCTTAACCCC
CTAAGCAGTAGGGAAACAGTCGAAAGAGTACAAGTCTTAACCCCCTAAGCAGTAGGGTAACAGGC
T
Found at i:80946641 original size:87 final size:86
Alignment explanation
Indices: 80946095--80946646 Score: 540
Period size: 87 Copynumber: 6.3 Consensus size: 86
80946085 AGCCTTATCT
* * *
80946095 CCCTAAGCAGTAGGATAACAGGCTGAATTTATAGATCTTAACCCCCTAAGCAGTAGGGAAACGGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
* *
80946160 TCG-AAGACGAATGGTCTTAAAC
66 TCGAAAG-CGAA-AGCCTTAAAC
* * * * *** *
80946182 CCCTAAGCAGTAGGGTAACAGAC-CAAATTGCAGATCTTATTTCCCTAAGCAGTAGTGG-AGCAG
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAG
** * *
80946245 ATCGAAGATTGAAAAACCTTAACC
65 ATCGAA-AGCG-AAAGCCTTAAAC
* * * * *
80946269 CCCTAAACAGTAGGGTAACAGGTTGAATTCACAAATCTCAACCCCCTAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
*
80946334 TC-AAAG-GTAACAAGCCTTAACC
66 TCGAAAGCG--A-AAGCCTTAAAC
* * *
80946356 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTGACATATCTTAACCCCCTAAGTAGTAGGGAAACA
1 CCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
** ** *
80946421 GATTAAAAGCGATGGCTTTAAAC
64 GATCGAAAGCGAAAGCCTTAAAC
* * *
80946444 CCCTAAGCAATAGGATAACAGGCTGAAGATTGACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
1 CCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
*
80946509 GATCG-AAGACGAAGGGCCTTAAAC
64 GATCGAAAG-CGAA-AGCCTTAAAC
* * * *
80946533 CCCTAAGCAGTAGGGTAACAGGCTGAATTTCCATATCTTAACCCCCTAAGTAGTAGGGAAACAGG
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
** *
80946598 TCGAAAGCGACAAATCTTAACC
66 TCGAAAGCGA-AAGCCTTAAAC
*
80946620 CCCTATGCAGTAGGGTAACAGGCTGAA
1 CCCTAAGCAGTAGGGTAACAGGCTGAA
80946647 AATTACAAAT
Statistics
Matches: 386, Mismatches: 63, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
85 1 0.00
86 35 0.09
87 163 0.42
88 113 0.29
89 69 0.18
90 4 0.01
91 1 0.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (86 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
TCGAAAGCGAAAGCCTTAAAC
Found at i:80947103 original size:18 final size:18
Alignment explanation
Indices: 80947080--80947124 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
80947070 AATTAAAGCC
*
80947080 AACCCATTAAACGCACTA
1 AACCCATTAAACCCACTA
**
80947098 AACCCACAAAACCCACTA
1 AACCCATTAAACCCACTA
80947116 AACCCATTA
1 AACCCATTA
80947125 CAGTACAAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.47, C:0.38, G:0.02, T:0.13
Consensus pattern (18 bp):
AACCCATTAAACCCACTA
Found at i:80948421 original size:22 final size:21
Alignment explanation
Indices: 80948387--80948443 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 21
80948377 TCTAAATACA
80948387 ATATATGCATATATATTTCCATAT
1 ATATATG--TATATATTTCCA-AT
*
80948411 ATATATGTATAT-TTTCTAAT
1 ATATATGTATATATTTCCAAT
* *
80948431 ACATATATATATA
1 ATATATGTATATA
80948444 GATATATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 12 0.41
21 5 0.17
22 5 0.17
24 7 0.24
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (21 bp):
ATATATGTATATATTTCCAAT
Found at i:80955062 original size:19 final size:20
Alignment explanation
Indices: 80955034--80955072 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
80955024 TCTTATTTTT
80955034 TATTTATTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
*
80955053 TATTTGTTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
80955073 ACGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:80955090 original size:25 final size:23
Alignment explanation
Indices: 80955053--80955098 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
80955043 TTTGTTTTAA
*
80955053 TATTTGTTTTTATGTTTTAAACG
1 TATTTGTTTTTATATTTTAAACG
80955076 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
80955099 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.02, G:0.09, T:0.61
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAACG
Found at i:80965826 original size:9 final size:9
Alignment explanation
Indices: 80965812--80965888 Score: 91
Period size: 9 Copynumber: 8.6 Consensus size: 9
80965802 ATAAGTATAA
*
80965812 AATTAACTG
1 AATTAACCG
*
80965821 AATTAATCG
1 AATTAACCG
80965830 AATTAACCG
1 AATTAACCG
*
80965839 AATTACCCG
1 AATTAACCG
* *
80965848 AATTAATCA
1 AATTAACCG
* *
80965857 AATTACCCA
1 AATTAACCG
80965866 AATTAACCG
1 AATTAACCG
80965875 AATTAACCG
1 AATTAACCG
80965884 AATTA
1 AATTA
80965889 TTTGTATAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 57 1.00
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:80965842 original size:27 final size:27
Alignment explanation
Indices: 80965811--80965888 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
80965801 AATAAGTATA
*
80965811 AAATTAACTGAATTAATCGAATTAACC
1 AAATTAACCGAATTAATCGAATTAACC
* * * *
80965838 GAATTACCCGAATTAATCAAATTACCC
1 AAATTAACCGAATTAATCGAATTAACC
*
80965865 AAATTAACCGAATTAACCGAATTA
1 AAATTAACCGAATTAATCGAATTA
80965889 TTTGTATAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (27 bp):
AAATTAACCGAATTAATCGAATTAACC
Found at i:80978419 original size:12 final size:13
Alignment explanation
Indices: 80978393--80978458 Score: 59
Period size: 12 Copynumber: 5.1 Consensus size: 13
80978383 ATTCTTAATA
*
80978393 AAAATTTTATATT
1 AAAATTATATATT
80978406 AAAATTAT-TATT
1 AAAATTATATATT
80978418 AAATATTATAATAATT
1 AAA-ATTAT-AT-ATT
80978434 AATAA-TAT-TATT
1 AA-AATTATATATT
80978446 -AAATTATATATT
1 AAAATTATATATT
80978458 A
1 A
80978459 TTTTATTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 16
0.72 0.02 0.26
Matches are distributed among these distances:
10 2 0.05
11 4 0.09
12 14 0.32
13 13 0.30
15 4 0.09
16 6 0.14
17 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AAAATTATATATT
Found at i:80978538 original size:26 final size:25
Alignment explanation
Indices: 80978503--80978558 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
80978493 AAATATGATT
** * *
80978503 AAATTATTTAATTTTATTTTTATTA
1 AAATTATTTAACATTAATCTTATTA
80978528 AAATATATTTAACATTAATCTTATTA
1 AAAT-TATTTAACATTAATCTTATTA
80978554 AAATT
1 AAATT
80978559 TAATAACAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (25 bp):
AAATTATTTAACATTAATCTTATTA
Found at i:80978571 original size:25 final size:26
Alignment explanation
Indices: 80978522--80978572 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
80978512 AATTTTATTT
* *
80978522 TTATTAAAATATATTTAACATTAATC
1 TTATTAAAATATATATAACAATAATC
*
80978548 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATATATATAACAATAATC
80978573 ATCTACCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:80978714 original size:44 final size:46
Alignment explanation
Indices: 80978644--80978734 Score: 132
Period size: 44 Copynumber: 2.0 Consensus size: 46
80978634 ATTACAACAT
80978644 CATTCCATTCAACCAAACACAAGAATT-CT-ATTACAGCTCCATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCCATTC
*** *
80978688 CATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCCATTC
80978734 C
1 C
80978735 GTTACAGCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 24 0.59
45 2 0.05
46 15 0.37
ACGTcount: A:0.34, C:0.30, G:0.07, T:0.30
Consensus pattern (46 bp):
CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCCATTC
Found at i:80978774 original size:16 final size:16
Alignment explanation
Indices: 80978719--80978773 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
80978709 TGAATTACTG
80978719 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
80978735 GTTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
80978751 ATTACAG-TCCTATTCC
1 ATTACAGCT-CTATTCC
80978767 ATTACAG
1 ATTACAG
80978774 TGAACCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 1 0.03
16 33 0.97
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Done.