Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 241 of 311
Found at i:80981621 original size:29 final size:28
Alignment explanation
Indices: 80981552--80981622 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 28
80981542 TTATTATGTT
80981552 TCTATTTATATTTATTTTGTTATTCTAA
1 TCTATTTATATTTATTTTGTTATTCTAA
*
80981580 TACTA-TTATTATTTATCTAATTTTTA-T-TAA
1 T-CTATTTA-TATTTAT-T--TTGTTATTCTAA
80981610 TCTATTTATATTT
1 TCTATTTATATTT
80981623 CTATTATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
28 4 0.11
29 18 0.50
30 8 0.22
31 1 0.03
32 5 0.14
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.63
Consensus pattern (28 bp):
TCTATTTATATTTATTTTGTTATTCTAA
Found at i:80981627 original size:20 final size:20
Alignment explanation
Indices: 80981599--80981653 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
80981589 TATTTATCTA
* *
80981599 ATTTTTATTAATCTATTTAT
1 ATTTCTATTAATATATTTAT
* *
80981619 ATTTCTATTATTATATTTCT
1 ATTTCTATTAATATATTTAT
*
80981639 ATTTCTATTTATATA
1 ATTTCTATTAATATA
80981654 CTAATATTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTCTATTAATATATTTAT
Found at i:80981632 original size:14 final size:14
Alignment explanation
Indices: 80981615--80981641 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80981605 ATTAATCTAT
80981615 TTATATTTCTATTA
1 TTATATTTCTATTA
80981629 TTATATTTCTATT
1 TTATATTTCTATT
80981642 TCTATTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATATTTCTATTA
Found at i:80981814 original size:25 final size:25
Alignment explanation
Indices: 80981786--80981834 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
80981776 CTCATTTCAA
* *
80981786 ATTTTTATACATTATTTACTTTAAT
1 ATTTTCATACATTATGTACTTTAAT
* *
80981811 ATTTTCATATATTATGTATTTTAA
1 ATTTTCATACATTATGTACTTTAA
80981835 ACCTTTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (25 bp):
ATTTTCATACATTATGTACTTTAAT
Found at i:80985296 original size:19 final size:20
Alignment explanation
Indices: 80985260--80985299 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
80985250 ATATTTAATT
*
80985260 TAAAAAATTCAGTGATTAAA
1 TAAAAAATTCAGTAATTAAA
*
80985280 TAAAAAGTTCA-TAATTAAA
1 TAAAAAATTCAGTAATTAAA
80985299 T
1 T
80985300 GATCAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (20 bp):
TAAAAAATTCAGTAATTAAA
Found at i:80987895 original size:14 final size:13
Alignment explanation
Indices: 80987873--80987977 Score: 52
Period size: 14 Copynumber: 7.5 Consensus size: 13
80987863 ATTTTATATA
80987873 TTATA-TATATTT
1 TTATATTATATTT
80987885 TTAATATTATATTT
1 TT-ATATTATATTT
* *
80987899 TTATATTTTAATACT
1 TTATATTAT-AT-TT
* *
80987914 ATATTATGTATATAT
1 TTA-TAT-TATATTT
80987929 TTATATATATATTAT
1 TTATAT-TATATT-T
* *
80987944 GTACA-TATATTT
1 TTATATTATATTT
80987956 TCTAATATTATTATTT
1 T-T-ATATTA-TATTT
80987972 TTATAT
1 TTATAT
80987978 ATTATCATGT
Statistics
Matches: 70, Mismatches: 12, Indels: 20
0.69 0.12 0.20
Matches are distributed among these distances:
12 3 0.04
13 16 0.23
14 25 0.36
15 13 0.19
16 11 0.16
17 2 0.03
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (13 bp):
TTATATTATATTT
Found at i:80987917 original size:44 final size:43
Alignment explanation
Indices: 80987821--80988048 Score: 127
Period size: 44 Copynumber: 5.1 Consensus size: 43
80987811 CTCTAATAAG
*
80987821 TATATATTATGTATATATATTTTAATACTATATTGAGTATATATTT
1 TATATATTA--TATATAT-TTTTAATATTATATTGAGTATATATTT
**
80987867 TATATATTATATATATTTTTAATATTATATT-TTTATAT-TTT
1 TATATATTATATATATTTTTAATATTATATTGAGTATATATTT
* *
80987908 AATACTATATTATGTATATATTT-ATATATATATT-ATGTACATATATTT
1 --TA-TATATTATATATATTTTTAATAT-TATATTGA-GT--ATATATTT
*
80987956 TCTA-A-TAT-TATTATTTTTATATATTATCA-T--GTATATATTT
1 TATATATTATATA-TATTTTTA-ATATTAT-ATTGAGTATATATTT
* * *
80987996 TAATATTATTAGTTATATATTTTTTATACTAT-TTCGTGTATATATATT
1 T-ATA-TATTA--TATATATTTTTAATATTATATT-GAGTATATAT-TT
80988044 TATAT
1 TATAT
80988049 TATCCTTATT
Statistics
Matches: 146, Mismatches: 12, Indels: 48
0.71 0.06 0.23
Matches are distributed among these distances:
40 9 0.06
41 5 0.03
42 9 0.06
43 30 0.21
44 37 0.25
45 14 0.10
46 19 0.13
47 17 0.12
48 6 0.04
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.58
Consensus pattern (43 bp):
TATATATTATATATATTTTTAATATTATATTGAGTATATATTT
Found at i:80987988 original size:65 final size:64
Alignment explanation
Indices: 80987836--80988018 Score: 170
Period size: 64 Copynumber: 2.8 Consensus size: 64
80987826 ATTATGTATA
*
80987836 TATATTTTAATACTATATTGA-GTATATATTTT-ATA-TATTA-T-ATATATTTT-TAATATTAT
1 TATATTTTAATACTATA-TCATGTATATATTTTAATATTATTAGTCATATATTTTCTAATA-T-T
80987895 ATTTT
63 A---T
*
80987900 TATATTTTAATACTATATTATGTATATA-TTTATATATATATTATGTACATATATTTTCTAATAT
1 TATATTTTAATACTATATCATGTATATATTTTA-ATAT-TATTA-GT-CATATATTTTCTAATAT
80987964 TAT
62 TAT
*
80987967 TAT-TTTT-ATA-TATTATCATGTATATATTTTAATATTATTAGTTATATATTTT
1 TATATTTTAATACTA-TATCATGTATATATTTTAATATTATTAGTCATATATTTT
80988019 TTATACTATT
Statistics
Matches: 104, Mismatches: 3, Indels: 26
0.78 0.02 0.20
Matches are distributed among these distances:
62 9 0.09
63 7 0.07
64 31 0.30
65 22 0.21
66 8 0.08
67 9 0.09
69 1 0.01
70 2 0.02
71 10 0.10
72 5 0.05
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (64 bp):
TATATTTTAATACTATATCATGTATATATTTTAATATTATTAGTCATATATTTTCTAATATTAT
Found at i:80987994 original size:24 final size:24
Alignment explanation
Indices: 80987967--80988071 Score: 82
Period size: 22 Copynumber: 4.6 Consensus size: 24
80987957 CTAATATTAT
80987967 TATTTTTATATATTATCATGTATA
1 TATTTTTATATATTATCATGTATA
*
80987991 TA-TTTTA-ATATTATTA-GTTATA
1 TATTTTTATATATTATCATG-TATA
*
80988013 TATTTTTTATACTATT-TCGTGTATA
1 TA-TTTTTATA-TATTATCATGTATA
* *
80988038 TA-TATT-TATATTATCCT-TAT-
1 TATTTTTATATATTATCATGTATA
*
80988058 TATTATTATATATT
1 TATTTTTATATATT
80988072 TTATTATATA
Statistics
Matches: 67, Mismatches: 5, Indels: 20
0.73 0.05 0.22
Matches are distributed among these distances:
20 2 0.03
21 12 0.18
22 25 0.37
23 8 0.12
24 7 0.10
25 8 0.12
26 5 0.07
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (24 bp):
TATTTTTATATATTATCATGTATA
Found at i:80988015 original size:38 final size:40
Alignment explanation
Indices: 80987929--80988015 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 40
80987919 ATGTATATAT
* *
80987929 TTATATATATATTATGTACATATATTTTCTAATATTATTAT
1 TTATATATATATCATGTA-ATATATTTTCTAATATTATTAG
*
80987970 TTTTATATATTATCATGT-ATATA-TTT-TAATATTATTAG
1 TTATATATA-TATCATGTAATATATTTTCTAATATTATTAG
80988008 TTATATAT
1 TTATATAT
80988016 TTTTTATACT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
38 18 0.44
39 3 0.07
40 5 0.12
41 8 0.20
42 7 0.17
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.57
Consensus pattern (40 bp):
TTATATATATATCATGTAATATATTTTCTAATATTATTAG
Found at i:80988043 original size:89 final size:91
Alignment explanation
Indices: 80987823--80988081 Score: 270
Period size: 87 Copynumber: 2.9 Consensus size: 91
80987813 CTAATAAGTA
* * *
80987823 TATATTATGTATATATATTTTAATACTATATTGAGTATATAT-TTTATATATTA-TATATATTTT
1 TATATTATGTATATAT-TTTTTATACTATATTGTGTATATATATTTATATAATATTAT-TATTTT
* *
80987886 TA-ATATTATATTTTTATATTTTAATAC
64 TATATATTATATGTATATATTTTAATAC
* * * *
80987913 TATATTATGTATATA-TTTATATA-TATATTATGTACATATATTT-TCTAATATTATTATTTTTA
1 TATATTATGTATATATTTTTTATACTATATTGTGTATATATATTTATATAATATTATTATTTTTA
80987975 TATATTATCATGTATATATTTTAATA-
66 TATATTAT-ATGTATATATTTTAATAC
* * *
80988001 T-TATTA-GTTATATATTTTTTATACTAT-TTCGTGTATATATATTTATATTATCCTTATTATTA
1 TATATTATG-TATATATTTTTTATACTATATT-GTGTATATATATTTATATAAT-ATTATTATTT
*
80988063 TTATATATTTTAT-TATATA
63 TTATATATTATATGTATATA
80988082 CGTATAGACA
Statistics
Matches: 142, Mismatches: 17, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
86 1 0.01
87 37 0.26
88 29 0.20
89 36 0.25
90 21 0.15
91 18 0.13
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (91 bp):
TATATTATGTATATATTTTTTATACTATATTGTGTATATATATTTATATAATATTATTATTTTTA
TATATTATATGTATATATTTTAATAC
Found at i:80988071 original size:22 final size:22
Alignment explanation
Indices: 80987834--80988052 Score: 92
Period size: 24 Copynumber: 9.9 Consensus size: 22
80987824 ATATTATGTA
*
80987834 TATATATTTTAATACTAT-ATTGAG
1 TATATATTTTAATATTATCA-T--G
80987858 TATATATTTTATATATTAT-A--
1 TATATATTTTA-ATATTATCATG
*
80987878 TATAT-TTTTAATATTAT-ATT
1 TATATATTTTAATATTATCATG
* *
80987898 TTTATATTTTAATACTATATTATG
1 TATATATTTTAATA-T-TATCATG
*
80987922 TATATA-TTTATATATATATTATG
1 TATATATTTTA-ATAT-TATCATG
*
80987945 TACATATATTTT-CTA--AT-AT-
1 T--ATATATTTTAATATTATCATG
80987964 TATTAT-TTTTATATATTATCATG
1 TA-TATATTTTA-ATATTATCATG
*
80987987 TATATATTTTAATATTATTA-G
1 TATATATTTTAATATTATCATG
*
80988008 TTATATATTTTTTATACTATT-TCGTG
1 -TATATA--TTTTA-A-TATTATCATG
80988034 TATATATATTT-ATATTATC
1 TATATAT-TTTAATATTATC
80988053 CTTATTATTA
Statistics
Matches: 159, Mismatches: 9, Indels: 56
0.71 0.04 0.25
Matches are distributed among these distances:
17 5 0.03
18 11 0.07
19 8 0.05
20 11 0.07
21 17 0.11
22 23 0.14
23 25 0.16
24 31 0.19
25 20 0.13
26 8 0.05
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (22 bp):
TATATATTTTAATATTATCATG
Found at i:80988330 original size:21 final size:18
Alignment explanation
Indices: 80988306--80988350 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 18
80988296 ACATTTCTAA
80988306 TATGTATTTCTAATACTATAT
1 TATGTATTTC--ATA-TATAT
80988327 TATGT-TTTCATATATAT
1 TATGTATTTCATATATAT
80988344 TATGTAT
1 TATGTAT
80988351 ATACTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 10 0.43
18 4 0.17
20 4 0.17
21 5 0.22
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.56
Consensus pattern (18 bp):
TATGTATTTCATATATAT
Found at i:80994020 original size:21 final size:21
Alignment explanation
Indices: 80993994--80994035 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
80993984 CAGAGACGAT
80993994 GATTATATACTTATAAATAGG
1 GATTATATACTTATAAATAGG
80994015 GATTATATACTTATAAATAGG
1 GATTATATACTTATAAATAGG
80994036 TATGAGCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (21 bp):
GATTATATACTTATAAATAGG
Found at i:80994214 original size:20 final size:20
Alignment explanation
Indices: 80994172--80994214 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
80994162 ATATTTTAGA
* *
80994172 TAATTTTATAATTATTTTAT
1 TAATTTGATAATTAGTTTAT
80994192 TAATTTGATAATTAAGTTT-T
1 TAATTTGATAATT-AGTTTAT
80994212 TAA
1 TAA
80994215 CTAAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
TAATTTGATAATTAGTTTAT
Found at i:80997212 original size:17 final size:17
Alignment explanation
Indices: 80997192--80997225 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80997182 TAAAATTTTG
*
80997192 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
*
80997209 TTGAGTAAATTAATTAA
1 TTGAGAAAATTAATTAA
80997226 ATAAATAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:81008022 original size:31 final size:30
Alignment explanation
Indices: 81007977--81008082 Score: 123
Period size: 29 Copynumber: 3.6 Consensus size: 30
81007967 GACCTAAGTA
*
81007977 TAAATAT-AGAAAAG-TTTGTGGCATAAATTG
1 TAAATATGCGAAAAGTTTTGTGGCAT-AA-TG
81008007 TAAATATGCGAAAAGTTTTGTGGCATAA-G
1 TAAATATGCGAAAAGTTTTGTGGCATAATG
*
81008036 TAAATATGCGAAAAGTTTTGTGTG-ATAAGTA
1 TAAATATGCGAAAAGTTTTGTG-GCATAA-TG
81008067 TAAATATG-GAAAAGTT
1 TAAATATGCGAAAAGTT
81008083 GAAGTGAAAG
Statistics
Matches: 69, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
29 27 0.39
30 16 0.23
31 16 0.23
32 10 0.14
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.33
Consensus pattern (30 bp):
TAAATATGCGAAAAGTTTTGTGGCATAATG
Found at i:81008380 original size:13 final size:11
Alignment explanation
Indices: 81008355--81008393 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
81008345 TAAATATTAC
*
81008355 TTTATTAATAT
1 TTTACTAATAT
81008366 TTTACTGAGATAT
1 TTTACT-A-ATAT
81008379 TTTACTAATAT
1 TTTACTAATAT
81008390 TTTA
1 TTTA
81008394 TTATAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 13 0.52
12 2 0.08
13 10 0.40
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (11 bp):
TTTACTAATAT
Found at i:81011056 original size:9 final size:11
Alignment explanation
Indices: 81011032--81011064 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
81011022 CACAAAAGTC
81011032 CTCTCAAATTT
1 CTCTCAAATTT
81011043 CTCTCAAATTT
1 CTCTCAAATTT
81011054 CTCTCAAATTT
1 CTCTCAAATTT
81011065 TCTAAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.45
Consensus pattern (11 bp):
CTCTCAAATTT
Found at i:81011289 original size:46 final size:48
Alignment explanation
Indices: 81011229--81011331 Score: 174
Period size: 48 Copynumber: 2.2 Consensus size: 48
81011219 AGTGATTATT
81011229 TTAATTTTTCAATACTATTTAATA-TTT-TTCATTTATGCAATTTTAA
1 TTAATTTTTCAATACTATTTAATATTTTATTCATTTATGCAATTTTAA
* *
81011275 TTAATTTTTCAATACTATTTAATATTTTATTTATTTATGTAATTTTAA
1 TTAATTTTTCAATACTATTTAATATTTTATTCATTTATGCAATTTTAA
81011323 TTAATTTTT
1 TTAATTTTT
81011332 ATTTTATAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
46 24 0.45
47 3 0.06
48 26 0.49
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (48 bp):
TTAATTTTTCAATACTATTTAATATTTTATTCATTTATGCAATTTTAA
Found at i:81012247 original size:7 final size:7
Alignment explanation
Indices: 81012227--81012269 Score: 68
Period size: 7 Copynumber: 6.0 Consensus size: 7
81012217 CATAATAAAA
81012227 TAGTCATT
1 TAGT-ATT
*
81012235 TCGTATT
1 TAGTATT
81012242 TAGTATT
1 TAGTATT
81012249 TAGTATT
1 TAGTATT
81012256 TAGTATT
1 TAGTATT
81012263 TAGTATT
1 TAGTATT
81012270 ATGTATATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
7 30 0.91
8 3 0.09
ACGTcount: A:0.26, C:0.05, G:0.14, T:0.56
Consensus pattern (7 bp):
TAGTATT
Found at i:81012801 original size:30 final size:30
Alignment explanation
Indices: 81012765--81012830 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
81012755 TGACGACGCA
*
81012765 GGCCCATCAACAATGCCCACACAATCACCG
1 GGCCCATCAACAACGCCCACACAATCACCG
* *
81012795 GGCCCATCAACAGCGCCCACACAGTCACCG
1 GGCCCATCAACAACGCCCACACAATCACCG
81012825 GGCCCA
1 GGCCCA
81012831 ACACTTCAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.29, C:0.45, G:0.18, T:0.08
Consensus pattern (30 bp):
GGCCCATCAACAACGCCCACACAATCACCG
Found at i:81013417 original size:55 final size:54
Alignment explanation
Indices: 81013335--81013472 Score: 158
Period size: 55 Copynumber: 2.6 Consensus size: 54
81013325 TGTATAAAAT
* ****
81013335 TTTTTATATTGTTT-TA--TTTAATAAAATAAAAGTTATTTTTAATATTTTAATA
1 TTTTTATATT-TTTATATTTTTAATAAAATAAAAGTTATTTTGAATAAGACAATA
*
81013387 TTTATT-TACTTTTTATATTTTTAATAAAATAAAAGTTCTTTTGAATAAGACAATA
1 TTT-TTATA-TTTTTATATTTTTAATAAAATAAAAGTTATTTTGAATAAGACAATA
81013442 TTTTTAATATTTTTATATTTTTAATAAAATA
1 TTTTT-ATATTTTTATATTTTTAATAAAATA
81013473 TAAATAATGC
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
52 8 0.11
53 6 0.08
54 2 0.03
55 55 0.75
56 2 0.03
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (54 bp):
TTTTTATATTTTTATATTTTTAATAAAATAAAAGTTATTTTGAATAAGACAATA
Found at i:81013454 original size:8 final size:9
Alignment explanation
Indices: 81013438--81013467 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
81013428 TGAATAAGAC
81013438 AATATTTTT
1 AATATTTTT
81013447 AATATTTTT
1 AATATTTTT
81013456 -ATATTTTT
1 AATATTTTT
81013464 AATA
1 AATA
81013468 AAATATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
AATATTTTT
Found at i:81013800 original size:30 final size:30
Alignment explanation
Indices: 81013766--81013828 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
81013756 ACTTAACAAG
81013766 CAAATGCCTCTAAAATAATTAA-AAAATTAA
1 CAAATGCCTCTAAAATAA-TAATAAAATTAA
* *
81013796 CAAATGCTTTTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAATAAAATTAA
81013826 CAA
1 CAA
81013829 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 3 0.10
30 27 0.90
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAATAAAATTAA
Found at i:81017489 original size:17 final size:18
Alignment explanation
Indices: 81017458--81017491 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
81017448 AATTACTTTT
81017458 TCCTTAAACACCCTAAAA
1 TCCTTAAACACCCTAAAA
81017476 TCCTTAAA-ACCCTAAA
1 TCCTTAAACACCCTAAA
81017492 CTCTAAACTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (18 bp):
TCCTTAAACACCCTAAAA
Found at i:81026480 original size:164 final size:164
Alignment explanation
Indices: 81026204--81026538 Score: 652
Period size: 164 Copynumber: 2.0 Consensus size: 164
81026194 CACTAGTAAG
*
81026204 AATACAGCTAAGGATAAACAAAAACATAAAAGGAAACTTTAATTATGCATATTGCCTTAGAAAAA
1 AATATAGCTAAGGATAAACAAAAACATAAAAGGAAACTTTAATTATGCATATTGCCTTAGAAAAA
81026269 AGGCATGACCAAGTGCACCTTGCTTAAAAATGATCTAGAACACTTTGCTGTCTAGTGCTAAGATC
66 AGGCATGACCAAGTGCACCTTGCTTAAAAATGATCTAGAACACTTTGCTGTCTAGTGCTAAGATC
81026334 CAATGCTTAGGCACTAGGTGCACAACTCAACAAC
131 CAATGCTTAGGCACTAGGTGCACAACTCAACAAC
81026368 AATATAGCTAAGGATAAACAAAAACATAAAAGGAAACTTTAATTATGCATATTGCCTTAGAAAAA
1 AATATAGCTAAGGATAAACAAAAACATAAAAGGAAACTTTAATTATGCATATTGCCTTAGAAAAA
*
81026433 AGGCATGACCAAGTGCACCTTGCTTAAAAATGATTTAGAACACTTTGCTGTCTAGTGCTAAGATC
66 AGGCATGACCAAGTGCACCTTGCTTAAAAATGATCTAGAACACTTTGCTGTCTAGTGCTAAGATC
81026498 CAATGCTTAGGCACTAGGTGCACAACTCAACAAC
131 CAATGCTTAGGCACTAGGTGCACAACTCAACAAC
81026532 AATATAG
1 AATATAG
81026539 TTACATGTGC
Statistics
Matches: 169, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
164 169 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (164 bp):
AATATAGCTAAGGATAAACAAAAACATAAAAGGAAACTTTAATTATGCATATTGCCTTAGAAAAA
AGGCATGACCAAGTGCACCTTGCTTAAAAATGATCTAGAACACTTTGCTGTCTAGTGCTAAGATC
CAATGCTTAGGCACTAGGTGCACAACTCAACAAC
Found at i:81035989 original size:259 final size:260
Alignment explanation
Indices: 81035515--81036003 Score: 623
Period size: 259 Copynumber: 1.9 Consensus size: 260
81035505 ACCAACTCAG
* * ** **
81035515 TTAAAATGTATAAAAATATATAATAAAACTTTAATTAATAGGTAAATTAAAAGTTTTACTAATGT
1 TTAAAATATATAAAAATATAAAATAAAACTTTAATTAATAGGTAAATTAAAAGAATTACTAATAC
* * * * *
81035580 AATTGACGTGGGTTCAAATCCCATTATATGCATATTTTTATTAGATTTTTTTAAAGTGAAAAGAC
66 AATTGACGTAGGTTCAAATACCAATATATGCATATTTTAATTAGATTTTTTTAAAGTGAAAAAAC
** * *
81035645 TAAAATACTCTTGAATAACATTACTTATTTTAATTACGAAAGGGCATTTTCGTAACTTCCTAACG
131 TAAAATACTCTCAAATAACATTACTTATTTTAATTACGAAAGGACATTTTCATAACTTCCTAACG
* * *
81035710 GAGTTGGTGACCCGGTTGAGGGTGACATCAACTCAATTAGAGATAATAAAGCATGCATAATAAAA
196 GAGTTGATGACCCAGTTGAGGATGACATCAACTCAATTAGAGATAATAAAGCATGCATAATAAAA
* *
81035775 TTAAAATATATAAAAATATCAAAATAAAACTTTAGTTAAGT-GGTAAATTAAAA-AATTATTAAT
1 TTAAAATATATAAAAATAT-AAAATAAAACTTTAATTAA-TAGGTAAATTAAAAGAATTACTAAT
* *
81035838 ACAATTGACGTAGGTTTAAATACCAAT-TATGCATGTTTTAATT-GACTTTTTTTAAAGTGAAAA
64 ACAATTGACGTAGGTTCAAATACCAATATATGCATATTTTAATTAGA-TTTTTTTAAAGTGAAAA
* *
81035901 AACTAAAATA-TCCTCAAATAATATTACTTATTTTAATTAC-AGAAGGACATTCTT-ATAAGTTC
128 AACTAAAATACT-CTCAAATAACATTACTTATTTTAATTACGA-AAGGACATT-TTCATAACTTC
* * * *
81035963 TTAACTGAGTTGATGACTCAGTTGAGGATGACATTAACTCA
190 CTAACGGAGTTGATGACCCAGTTGAGGATGACATCAACTCA
81036004 GTTAAGAGTT
Statistics
Matches: 195, Mismatches: 28, Indels: 13
0.83 0.12 0.06
Matches are distributed among these distances:
258 4 0.02
259 113 0.58
260 48 0.25
261 29 0.15
262 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (260 bp):
TTAAAATATATAAAAATATAAAATAAAACTTTAATTAATAGGTAAATTAAAAGAATTACTAATAC
AATTGACGTAGGTTCAAATACCAATATATGCATATTTTAATTAGATTTTTTTAAAGTGAAAAAAC
TAAAATACTCTCAAATAACATTACTTATTTTAATTACGAAAGGACATTTTCATAACTTCCTAACG
GAGTTGATGACCCAGTTGAGGATGACATCAACTCAATTAGAGATAATAAAGCATGCATAATAAAA
Found at i:81036324 original size:307 final size:293
Alignment explanation
Indices: 81035753--81036512 Score: 808
Period size: 307 Copynumber: 2.5 Consensus size: 293
81035743 CAATTAGAGA
** * *
81035753 TAATAAAGCATGCATAATAAAATTAAAATATATAAAAATATCAAAATAAAACTTTAGTTAAGTGG
1 TAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAATATTAAAATAAAACTTTAGTTAAGTGG
*** * * ** * * * * *
81035818 TAAATTAAAAAATTATTAATACAATTGACGTAGGTTTAAATACCA-ATTATGCATGTTTTAATTG
66 TAAATTAAAGTTTTAATAATGCAATTGGTGTGGGTTTAAATATCACA-TATGTATATTTTTATTG
* *
81035882 ACTTTTTTTAAAGTGAAAAAACTAAAATATCCTCAAATAATATTACTTATTTTAATTACAGAAGG
130 A-TTTTTTAAAAGTGAAAAAACTAAAATACCCTCAAATAATATTACTTATTTTAATTACAGAAGG
* * * * * *
81035947 ACATTCTTATAAGTTCTTAACTGAGTTGATGACTCAGTTGAGGATGACATTAACTCAGTTAAGAG
194 ACATTCTCATAACTTCCTAACTGAGTTGATGACCCAGTTGAGGATGACACTAACTCAGTCAAGAG
*
81036012 TTTTATTAATAGTGTGTATATTTATACAAATACACAAC-CGATAAAGT
259 TTTTATT-A-A-TG-GTATA--TAT----AT--ACAACTC-ATAAAGG
* ** * *
81036059 TCATGGAGTGTGCATAATAAAATTTAAATGTATAAAAATATTAAAGTAAAACTTTAGATT-AGTG
1 TAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAATATTAAAATAAAACTTTAG-TTAAGTG
* * * *
81036123 GTAAATTATATGTTTTAAAAATGTAATTGGTGTGGGTTCAAATATCATCATATGTATATTTTTAT
65 GTAAATTA-AAGTTTTAATAATGCAATTGGTGTGGGTTTAAATATCA-CATATGTATATTTTTAT
** * *
81036188 TGATTTTTTAAAAGTGAAAAGGCTAAAATGCCCTCGAATAATATTACTTATTTTAATTAC-GAAA
128 TGATTTTTTAAAAGTGAAAAAACTAAAATACCCTCAAATAATATTACTTATTTTAATTACAG-AA
* * * *
81036252 GGACATTCTCGTAACTTCCTAACTGAGTTGGTGACCCGGTTGAGGATGACACTAACTTAGTCAAG
192 GGACATTCTCATAACTTCCTAACTGAGTTGATGACCCAGTTGAGGATGACACTAACTCAGTCAAG
* **
81036317 GGTTTTATTAATGGTATATATATACAACTCATGGAGG
257 AGTTTTATTAATGGTATATATATACAACTCATAAAGG
* * *
81036354 TAATAAAGTGGGCATAATAAAATTAAAATGTATAAAAATATTAAAATAAAACTTTAGTTGAGTGA
1 TAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAATATTAAAATAAAACTTTAGTTAAGTGG
* * * * * *
81036419 AAAATTAAAAGTTTTACTAATGCAATTGGTGTGAGTTTAAATCTAACTATATGTATATTTTTGTT
66 TAAATT-AAAGTTTTAATAATGCAATTGGTGTGGGTTTAAATATCAC-ATATGTATATTTTTATT
*
81036484 GTTTTTTTAAAAGTGAAAAAACTAAAATA
129 GATTTTTTAAAAGTGAAAAAACTAAAATA
81036513 TTTTCGAATA
Statistics
Matches: 379, Mismatches: 66, Indels: 29
0.80 0.14 0.06
Matches are distributed among these distances:
294 3 0.01
295 140 0.37
296 2 0.01
297 2 0.01
301 3 0.01
303 5 0.01
304 2 0.01
305 1 0.00
306 62 0.16
307 143 0.38
308 15 0.04
309 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (293 bp):
TAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAATATTAAAATAAAACTTTAGTTAAGTGG
TAAATTAAAGTTTTAATAATGCAATTGGTGTGGGTTTAAATATCACATATGTATATTTTTATTGA
TTTTTTAAAAGTGAAAAAACTAAAATACCCTCAAATAATATTACTTATTTTAATTACAGAAGGAC
ATTCTCATAACTTCCTAACTGAGTTGATGACCCAGTTGAGGATGACACTAACTCAGTCAAGAGTT
TTATTAATGGTATATATATACAACTCATAAAGG
Found at i:81036522 original size:295 final size:300
Alignment explanation
Indices: 81035764--81036533 Score: 819
Period size: 295 Copynumber: 2.6 Consensus size: 300
81035754 AATAAAGCAT
* *
81035764 GCATAATAAAATTAAAATATATAAAAATATCAAAATAAAACTTTAGTTAAGTGGTAAATTAAAA-
1 GCATAATAAAATTAAAATGTATAAAAATATTAAAATAAAACTTTAGTT-AGTGGTAAATTAAAAG
** * * ** * * * *
81035828 AATTATTAATACAATTGACGT-AGGTTTAAATACCAAT-TATGCATGTTTTAATTGACTTTTTTT
65 TTTTAATAATGCAATTGGTGTGA-GTTTAAAT-CTAATATATGTATATTTTTATTG--TTTTTTT
* *
81035891 -AAAGTGAAAAAACTAAAATATCCTCAAATAATATTACTTATTTTAATTACAGAAGGACATTCTT
126 AAAAGTGAAAAAACTAAAATATCCTCGAATAATATTACTTATTTTAATTACAGAAGGACATTCTC
* * * * *
81035955 ATAAGTTCTTAACTGAGTTGATGACTCAGTTGAGGATGACATTAACTCAGTTAAGAGTTTTATTA
191 ATAACTTCCTAACTGAGTTGATGACCCAGTTGAGGATGACACTAACTCAGTCAAGAGTTTTATTA
* * ** *
81036020 ATAGTGTGTATATTTATACAAATACACAACCGATAAAGTTCATGGAGTGT
256 ATAGTGTGTATA-TTAT---AATA-ACAACCGATAAAGGTAATAAAGTGG
* * * *
81036070 GCATAATAAAATTTAAATGTATAAAAATATTAAAGTAAAACTTTAGATTAGTGGTAAATTATATG
1 GCATAATAAAATTAAAATGTATAAAAATATTAAAATAAAACTTTAG-TTAGTGGTAAATTAAAAG
* * * * * * *
81036135 TTTTAAAAATGTAATTGGTGTGGGTTCAAATATCATCATATGTATATTTTTATTGATTTTTTAAA
65 TTTTAATAATGCAATTGGTGTGAGTTTAAATCTAAT-ATATGTATATTTTTATTGTTTTTTTAAA
** ** *
81036200 AGTGAAAAGGCTAAAATGCCCTCGAATAATATTACTTATTTTAATTAC-GAAAGGACATTCTCGT
129 AGTGAAAAAACTAAAATATCCTCGAATAATATTACTTATTTTAATTACAG-AAGGACATTCTCAT
* * * *
81036264 AACTTCCTAACTGAGTTGGTGACCCGGTTGAGGATGACACTAACTTAGTCAAGGGTTTTATT-A-
193 AACTTCCTAACTGAGTTGATGACCCAGTTGAGGATGACACTAACTCAGTCAAGAGTTTTATTAAT
**
81036327 A-TG-GTATA-TAT-AT-ACAACTC-ATGGAGGTAATAAAGTGG
258 AGTGTGTATATTATAATAACAAC-CGATAAAGGTAATAAAGTGG
**
81036365 GCATAATAAAATTAAAATGTATAAAAATATTAAAATAAAACTTTAGTTGAGTGAAAAATTAAAAG
1 GCATAATAAAATTAAAATGTATAAAAATATTAAAATAAAACTTTAGTT-AGTGGTAAATTAAAAG
* *
81036430 TTTTACTAATGCAATTGGTGTGAGTTTAAATCTAACTATATGTATATTTTTGTTGTTTTTTTAAA
65 TTTTAATAATGCAATTGGTGTGAGTTTAAATCTAA-TATATGTATATTTTTATTGTTTTTTTAAA
** * *
81036495 AGTGAAAAAACTAAAATATTTTCGAATAGTATTAATTAT
129 AGTGAAAAAACTAAAATATCCTCGAATAATATTACTTAT
81036534 GAAACAACTC
Statistics
Matches: 385, Mismatches: 69, Indels: 31
0.79 0.14 0.06
Matches are distributed among these distances:
294 2 0.01
295 157 0.41
296 2 0.01
297 2 0.01
301 3 0.01
303 5 0.01
304 2 0.01
305 1 0.00
306 65 0.17
307 132 0.34
308 14 0.04
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (300 bp):
GCATAATAAAATTAAAATGTATAAAAATATTAAAATAAAACTTTAGTTAGTGGTAAATTAAAAGT
TTTAATAATGCAATTGGTGTGAGTTTAAATCTAATATATGTATATTTTTATTGTTTTTTTAAAAG
TGAAAAAACTAAAATATCCTCGAATAATATTACTTATTTTAATTACAGAAGGACATTCTCATAAC
TTCCTAACTGAGTTGATGACCCAGTTGAGGATGACACTAACTCAGTCAAGAGTTTTATTAATAGT
GTGTATATTATAATAACAACCGATAAAGGTAATAAAGTGG
Found at i:81038443 original size:18 final size:18
Alignment explanation
Indices: 81038416--81038453 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
81038406 ACTCCAAGGC
81038416 GACGACGAAGATGAAGAT
1 GACGACGAAGATGAAGAT
* *
81038434 GACGATGAAGATGGAGAT
1 GACGACGAAGATGAAGAT
81038452 GA
1 GA
81038454 TGAAGATGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.08, G:0.37, T:0.13
Consensus pattern (18 bp):
GACGACGAAGATGAAGAT
Found at i:81055939 original size:16 final size:16
Alignment explanation
Indices: 81055911--81055954 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
81055901 AAGTAAAACC
**
81055911 AAAGAAGAGAAAGAGGA
1 AAAGAA-AGAAAGAACA
*
81055928 ACAGAAAGAAAGAACA
1 AAAGAAAGAAAGAACA
81055944 AAAGAAAGAAA
1 AAAGAAAGAAA
81055955 AGTGTGGCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.70, C:0.05, G:0.25, T:0.00
Consensus pattern (16 bp):
AAAGAAAGAAAGAACA
Found at i:81055947 original size:12 final size:13
Alignment explanation
Indices: 81055911--81055953 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 13
81055901 AAGTAAAACC
*
81055911 AAAGAAGAGAAAG
1 AAAGAACAGAAAG
*
81055924 -AGGAACAGAAAG
1 AAAGAACAGAAAG
81055936 AAAGAACA-AAAG
1 AAAGAACAGAAAG
81055948 AAAGAA
1 AAAGAA
81055954 AAGTGTGGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 20 0.77
13 6 0.23
ACGTcount: A:0.70, C:0.05, G:0.26, T:0.00
Consensus pattern (13 bp):
AAAGAACAGAAAG
Found at i:81064139 original size:2 final size:2
Alignment explanation
Indices: 81064134--81064159 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
81064124 AATATATATA
81064134 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
81064160 GTACTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:81066152 original size:12 final size:12
Alignment explanation
Indices: 81066135--81066183 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
81066125 ATCATGATAT
81066135 ATAAAATTCTAG
1 ATAAAATTCTAG
81066147 ATAAAAGCTTC-A-
1 ATAAAA--TTCTAG
*
81066159 AT-TAATTCTAG
1 ATAAAATTCTAG
81066170 ATAAAATTCTAG
1 ATAAAATTCTAG
81066182 AT
1 AT
81066184 CATGATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
9 3 0.10
10 1 0.03
11 4 0.13
12 18 0.60
13 1 0.03
14 3 0.10
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.35
Consensus pattern (12 bp):
ATAAAATTCTAG
Found at i:81067991 original size:9 final size:9
Alignment explanation
Indices: 81067977--81068008 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
81067967 TTTATACAAA
81067977 TAATTCGGT
1 TAATTCGGT
*
81067986 TAATTCGAT
1 TAATTCGGT
81067995 TAATTCGGT
1 TAATTCGGT
81068004 TAATT
1 TAATT
81068009 TTATACTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.16, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:81070604 original size:118 final size:118
Alignment explanation
Indices: 81070380--81070672 Score: 536
Period size: 118 Copynumber: 2.5 Consensus size: 118
81070370 ACTGAACTGA
* *
81070380 ATTCAATCTTTCCA--TATATATGTACAATTTAAATAAAATTTTAATAGCATTTATTCACACAAA
1 ATTCAATCTTACCATTTGTATATGTACAATTTAAATAAAATTTTAATAGCATTTATTCACACAAA
81070443 TTTTTTTCACTAATATCCTTAATCTTTTAATTCATTTTCCAAAACATAAAATC
66 TTTTTTTCACTAATATCCTTAATCTTTTAATTCATTTTCCAAAACATAAAATC
81070496 ATTCAATCTTACCATTTGTATATGTACAATTTAAATAAAATTTTAATAGCATTTATTCACACAAA
1 ATTCAATCTTACCATTTGTATATGTACAATTTAAATAAAATTTTAATAGCATTTATTCACACAAA
81070561 TTTTTTTCACTAATATCCTTAATCTTTTAATTCATTTTCCAAAACATAAAATC
66 TTTTTTTCACTAATATCCTTAATCTTTTAATTCATTTTCCAAAACATAAAATC
* *
81070614 ATTCAATCTTACCATTTGTATATGTACAATTTAAATAAAATTTTAATAACATATATTCA
1 ATTCAATCTTACCATTTGTATATGTACAATTTAAATAAAATTTTAATAGCATTTATTCA
81070673 AACAGTTTTT
Statistics
Matches: 171, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
116 13 0.08
118 158 0.92
ACGTcount: A:0.39, C:0.15, G:0.02, T:0.43
Consensus pattern (118 bp):
ATTCAATCTTACCATTTGTATATGTACAATTTAAATAAAATTTTAATAGCATTTATTCACACAAA
TTTTTTTCACTAATATCCTTAATCTTTTAATTCATTTTCCAAAACATAAAATC
Found at i:81070967 original size:21 final size:21
Alignment explanation
Indices: 81070943--81070982 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
81070933 TGAATCACTT
*
81070943 AAATTTGTTCTTGAAGTCTTG
1 AAATATGTTCTTGAAGTCTTG
*
81070964 AAATATGTTCTTGATGTCT
1 AAATATGTTCTTGAAGTCT
81070983 CAACGCACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.10, G:0.17, T:0.47
Consensus pattern (21 bp):
AAATATGTTCTTGAAGTCTTG
Found at i:81074128 original size:173 final size:173
Alignment explanation
Indices: 81073826--81074143 Score: 451
Period size: 173 Copynumber: 1.8 Consensus size: 173
81073816 ATATATATAT
* * ** *
81073826 TTTTATCTATTTAACCAGCTTTCTGCGATTAAATTTTTTTTTGCAGCTTGCACATGTGTCTTATG
1 TTTTATCTATTTAACCAGCTTTCTGCAAGTAAATTTTTCCTTGCAGCTTGCACACGTGTCTTATG
* * * *
81073891 AGCACTTGAATTCATCAAAAGACATTACAGAAGAAATTCTTTTATCATGTTCTTGGTTGCATCAC
66 AGCACATGAATTCATC---A-ACATTACAAAAGAAATTCTTTTATCATGTTCTCGGTAGCATCAC
*
81073956 CTATTAAGGAAACATATATTTCCTTATGTCTCTCAATAAGGCATTTC
127 CTATTAAGAAAACATATATTTCCTTATGTCTCTCAATAAGGCATTTC
* *
81074003 TTTTATCTATTTAACCAGCTTTCTGCAAGTAAATTTTTCCTT-CATCTTGCAGGCACGTGTCTTG
1 TTTTATCTATTTAACCAGCTTTCTGCAAGTAAATTTTTCCTTGCAGCTTGCA--CACGTGTCTTA
*
81074067 TGAGTACATGAATTCATC-ACATTACAAAAGAAATTCTTTTATCATGTTCTCGGTAGCATCACCT
64 TGAGCACATGAATTCATCAACATTACAAAAGAAATTCTTTTATCATGTTCTCGGTAGCATCACCT
81074131 ATTAAGAAAACAT
129 ATTAAGAAAACAT
81074144 TTCATTAGCA
Statistics
Matches: 126, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
173 55 0.44
176 8 0.06
177 38 0.30
178 25 0.20
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (173 bp):
TTTTATCTATTTAACCAGCTTTCTGCAAGTAAATTTTTCCTTGCAGCTTGCACACGTGTCTTATG
AGCACATGAATTCATCAACATTACAAAAGAAATTCTTTTATCATGTTCTCGGTAGCATCACCTAT
TAAGAAAACATATATTTCCTTATGTCTCTCAATAAGGCATTTC
Found at i:81076202 original size:23 final size:23
Alignment explanation
Indices: 81076146--81076206 Score: 115
Period size: 22 Copynumber: 2.7 Consensus size: 23
81076136 CACTCCATGG
81076146 TGCACACAAGTGCCAAATATAAA
1 TGCACACAAGTGCCAAATATAAA
81076169 TGC-CACAAGTGCCAAATATAAA
1 TGCACACAAGTGCCAAATATAAA
81076191 TGCACACAAGTGCCAA
1 TGCACACAAGTGCCAA
81076207 TCTTCCTCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
22 22 0.59
23 15 0.41
ACGTcount: A:0.44, C:0.25, G:0.15, T:0.16
Consensus pattern (23 bp):
TGCACACAAGTGCCAAATATAAA
Found at i:81076257 original size:19 final size:19
Alignment explanation
Indices: 81076233--81076272 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
81076223 ACAAACCCTT
*
81076233 ACATGTTAACTATACCTGA
1 ACATGTTAAATATACCTGA
81076252 ACATGTTAAATATACCTGA
1 ACATGTTAAATATACCTGA
81076271 AC
1 AC
81076273 TATTTCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (19 bp):
ACATGTTAAATATACCTGA
Found at i:81078845 original size:6 final size:7
Alignment explanation
Indices: 81078828--81078856 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
81078818 TATCAGTCGT
81078828 TTTTTTA
1 TTTTTTA
81078835 TTTTTTA
1 TTTTTTA
81078842 TTTTTTA
1 TTTTTTA
81078849 TTTTTTA
1 TTTTTTA
81078856 T
1 T
81078857 GTTGACAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTA
Found at i:81082855 original size:3 final size:3
Alignment explanation
Indices: 81082849--81082944 Score: 165
Period size: 3 Copynumber: 32.0 Consensus size: 3
81082839 ATAACAGCAG
* * *
81082849 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA TAA AAA TAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
81082897 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
81082945 TGACGACGAA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 89 1.00
ACGTcount: A:0.68, C:0.30, G:0.00, T:0.02
Consensus pattern (3 bp):
CAA
Found at i:81086601 original size:21 final size:21
Alignment explanation
Indices: 81086569--81086609 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
81086559 GAACATTTGG
81086569 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
81086590 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
81086610 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:81095312 original size:12 final size:13
Alignment explanation
Indices: 81095295--81095331 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
81095285 GAACCGGACA
81095295 CGAACCGAA-CTC
1 CGAACCGAAGCTC
81095307 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
81095319 CGAACCGTAGCTC
1 CGAACCGAAGCTC
81095332 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:81098296 original size:24 final size:23
Alignment explanation
Indices: 81098269--81098321 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 23
81098259 TATGTATTTG
81098269 TTATTAAATAGATATT-TATTATAA
1 TTATTAAATAG-TATTATATTA-AA
*
81098293 TTATT--ATAGTTTTATATTAAA
1 TTATTAAATAGTATTATATTAAA
81098314 TTATTAAA
1 TTATTAAA
81098322 ATGAAGACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 10 0.40
22 9 0.36
23 1 0.04
24 5 0.20
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
TTATTAAATAGTATTATATTAAA
Found at i:81098443 original size:3 final size:3
Alignment explanation
Indices: 81098435--81098495 Score: 72
Period size: 3 Copynumber: 20.7 Consensus size: 3
81098425 ATGAATTAAA
* *
81098435 TAT TAT TAT TA- TAT TA- TAT TAT AAT TAT AAT GTAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
*
81098479 TAT TAT TAA TAT TAT TA
1 TAT TAT TAT TAT TAT TA
81098496 ACATATATAT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
2 4 0.08
3 43 0.88
4 2 0.04
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:81098455 original size:16 final size:16
Alignment explanation
Indices: 81098434--81098495 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 16
81098424 TATGAATTAA
81098434 ATATTATTATTATATT
1 ATATTATTATTATATT
*
81098450 ATATTATAATTATAATGT
1 ATATTATTATTAT-AT-T
81098468 ATTATTATTATTATTATT
1 A-TATTATTATTA-TATT
81098486 AATATTATTA
1 -ATATTATTA
81098496 ACATATATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
16 12 0.31
17 2 0.05
18 11 0.28
19 13 0.33
20 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (16 bp):
ATATTATTATTATATT
Found at i:81102000 original size:137 final size:139
Alignment explanation
Indices: 81101816--81102095 Score: 492
Period size: 141 Copynumber: 2.0 Consensus size: 139
81101806 ATATATATAT
*
81101816 TCCTTTCAAATTACTTTTTAGCCTCTCTGAAAAGCTTAAGAAGGAGAGAAACC-A-ACTTTAAAG
1 TCCTTTCAAATTACTTTTTAGCCTCTCTGAAAAGCTTAAGAAGGAGAGAAACCAACACCTTAAAG
* *
81101879 GCTGTCGAAGATTTTGTCATCAAAGCGAAGAAGCTGGAGAATGATTTACAGAGGTAAGTCACATC
66 GCTGCCGAAGATTTTGTCATCAAAGCAAAGAAGCTGGAGAATGATTTACAGAGGTAAGTCACATC
81101944 TAGTTCTTC
131 TAGTTCTTC
*
81101953 TCCTTTCAAATTACTTTTTAGCCTCTTTGAAAAGCTTAAGAAGGAGAGAAACCAATCCACCTTAA
1 TCCTTTCAAATTACTTTTTAGCCTCTCTGAAAAGCTTAAGAAGGAGAGAAACCAA--CACCTTAA
81102018 AGGCTGCCGAAGATTTTGTCATCAAAGCAAAGAAGCTGGAGAATGATTTACAGAGGTAAGTCACA
64 AGGCTGCCGAAGATTTTGTCATCAAAGCAAAGAAGCTGGAGAATGATTTACAGAGGTAAGTCACA
81102083 TCTAGTTCTTC
129 TCTAGTTCTTC
81102094 TC
1 TC
81102096 ACCAATATCT
Statistics
Matches: 135, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
137 52 0.39
138 1 0.01
141 82 0.61
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (139 bp):
TCCTTTCAAATTACTTTTTAGCCTCTCTGAAAAGCTTAAGAAGGAGAGAAACCAACACCTTAAAG
GCTGCCGAAGATTTTGTCATCAAAGCAAAGAAGCTGGAGAATGATTTACAGAGGTAAGTCACATC
TAGTTCTTC
Found at i:81104184 original size:178 final size:178
Alignment explanation
Indices: 81103871--81104236 Score: 538
Period size: 178 Copynumber: 2.1 Consensus size: 178
81103861 TCAAATTACT
* * *
81103871 CAATTTAGTCCCTAAAATTGGGACAAACATAACTTTCAATTTAAAGCCTCGAATTAAAATCTCTT
1 CAATTTAGTCCCTAAAATCGGGACAAACATAACTTTCAATATAAAGCCTCGAATTAAAATCTCAT
* * *
81103936 TTCACCAAAAATCATTAGGAACCCTCTATTTTGTATCTCTACCAAATATTTATGAAAATTTTGTA
66 TTCACCAAAAATCATTAGGAACCCTCTATTTTGTATCTCTACAAAAAATTTATGAAAATTTTGCA
81104001 TTTTATTCAATTTGGTCCCTAATATACGAAACTAACAATTAAGCTATA
131 TTTTATTCAATTTGGTCCCTAATATACGAAACTAACAATTAAGCTATA
* * * *
81104049 CAATTTAGTCTCTAAAATCGGGACAATCATAACTTTCAATATAGAGCCTCGAATTAAAATCTGAT
1 CAATTTAGTCCCTAAAATCGGGACAAACATAACTTTCAATATAAAGCCTCGAATTAAAATCTCAT
* * * * * *
81104114 TTCATCAAAACTCATTAGGGATCCTCTATTTTGTATC-CATACAAAAAATTTATTACAATATTT-
66 TTCACCAAAAATCATTAGGAACCCTCTATTTTGTATCTC-TACAAAAAATTTATGAAAAT-TTTG
* *
81104177 CATTTTATTCAATTTGGTCTCTAATATACGAAACTAACAATTAAGCTTTA
129 CATTTTATTCAATTTGGTCCCTAATATACGAAACTAACAATTAAGCTATA
81104227 CAATTTAGTC
1 CAATTTAGTC
81104237 ATTTTCTTAA
Statistics
Matches: 168, Mismatches: 18, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
177 1 0.01
178 164 0.98
179 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (178 bp):
CAATTTAGTCCCTAAAATCGGGACAAACATAACTTTCAATATAAAGCCTCGAATTAAAATCTCAT
TTCACCAAAAATCATTAGGAACCCTCTATTTTGTATCTCTACAAAAAATTTATGAAAATTTTGCA
TTTTATTCAATTTGGTCCCTAATATACGAAACTAACAATTAAGCTATA
Found at i:81107130 original size:93 final size:93
Alignment explanation
Indices: 81107018--81107189 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
81107008 GCCCATAAGT
*
81107018 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81107082 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
81107111 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
81107176 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
81107190 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:81107185 original size:46 final size:45
Alignment explanation
Indices: 81107010--81107184 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 45
81107000 TGTAACCCGC
*
81107010 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
81107056 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
81107102 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
81107149 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
81107185 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 67 0.61
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:81107204 original size:46 final size:44
Alignment explanation
Indices: 81107015--81107204 Score: 122
Period size: 46 Copynumber: 4.1 Consensus size: 44
81107005 CCCGCCCATA
* * * *
81107015 AGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCAAATCC-T
* *
81107060 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
81107110 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
81107153 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
81107200 AGTGA
1 AGTGA
81107205 TATGTCACTT
Statistics
Matches: 115, Mismatches: 12, Indels: 34
0.71 0.07 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 6 0.05
45 2 0.02
46 62 0.54
47 28 0.24
48 4 0.03
49 3 0.03
50 4 0.03
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:81112409 original size:45 final size:46
Alignment explanation
Indices: 81112323--81112441 Score: 136
Period size: 45 Copynumber: 2.6 Consensus size: 46
81112313 TGAGACGAGG
* **
81112323 GCTAGTGTAAGACATGTTTGTGACATGCAATGGCTTTGAGATGAAA
1 GCTAGTGTAAGACATGTTTGTGACATGCAATAGCTACGAGATGAAA
*
81112369 GCTAGT-TAAGACATGTTTGTGACATGC-ATCAGCTACGAGATGATA
1 GCTAGTGTAAGACATGTTTGTGACATGCAAT-AGCTACGAGATGAAA
* *
81112414 G-TCAGTGTAAGACCATGTCTGGGACATG
1 GCT-AGTGTAAGA-CATGTTTGTGACATG
81112442 GTATCGACTT
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
44 3 0.05
45 36 0.57
46 11 0.17
47 13 0.21
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTGTGACATGCAATAGCTACGAGATGAAA
Found at i:81120132 original size:47 final size:46
Alignment explanation
Indices: 81119926--81120131 Score: 165
Period size: 46 Copynumber: 4.4 Consensus size: 46
81119916 TAGTCACATA
* *
81119926 ATGA-GAGCCAGTGTAAGAGCATTTCTGGTACATGACATCGACATTGAG
1 ATGATGAGCCAGTGTAAGA-CATTTCTGGGACATG-CATCGAC-TCGAG
* * * * *
81119974 ATGA-GGGCTAGTGTAAGACATGTT-TGAGACATGCAACGGCCTCGAG
1 ATGATGAGCCAGTGTAAGACAT-TTCTGGGACATGCATC-GACTCGAG
* * *
81120020 ACG-TAAGCTAGTGTAAGACATGTT-TGGGACATGCATCGACTACGAG
1 ATGATGAGCCAGTGTAAGACAT-TTCTGGGACATGCATCGACT-CGAG
* *
81120066 ATGAT-AGTCAGTGTAAGACCATTTCTGGGACATGACATCGACTTGAG
1 ATGATGAGCCAGTGTAAGA-CATTTCTGGGACATG-CATCGACTCGAG
*
81120113 AT-ATGAGCCAGTATAAGAC
1 ATGATGAGCCAGTGTAAGAC
81120132 CGTGTCTAGG
Statistics
Matches: 130, Mismatches: 19, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
45 3 0.02
46 60 0.46
47 41 0.32
48 26 0.20
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (46 bp):
ATGATGAGCCAGTGTAAGACATTTCTGGGACATGCATCGACTCGAG
Found at i:81120144 original size:47 final size:47
Alignment explanation
Indices: 81120033--81120152 Score: 120
Period size: 47 Copynumber: 2.6 Consensus size: 47
81120023 TAAGCTAGTG
* * * *
81120033 TAAGA-CATGTTTGGGACATGCATCGACTACGAGATGATAGTCAGTG
1 TAAGACCATGTCTAGGACATGCATCGACTACGAGATGATAGCCAGTA
* * *
81120079 TAAGACCATTTCTGGGACATGACATCGACT-TGAGAT-ATGAGCCAGTA
1 TAAGACCATGTCTAGGACATG-CATCGACTACGAGATGAT-AGCCAGTA
*
81120126 TAAGACCGTGTCTAGGACATGGCATCG
1 TAAGACCATGTCTAGGACAT-GCATCG
81120153 GCACCTTACC
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
46 7 0.11
47 46 0.74
48 9 0.15
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (47 bp):
TAAGACCATGTCTAGGACATGCATCGACTACGAGATGATAGCCAGTA
Found at i:81126186 original size:19 final size:20
Alignment explanation
Indices: 81126143--81126187 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
81126133 GTTTCGTTTC
81126143 TATTATTTGTTTCCTTCTAT
1 TATTATTTGTTTCCTTCTAT
**
81126163 T-TTATTTGTTTTGTT-TAT
1 TATTATTTGTTTCCTTCTAT
81126181 TATTATT
1 TATTATT
81126188 ATTTCATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 4 0.18
19 17 0.77
20 1 0.05
ACGTcount: A:0.16, C:0.07, G:0.07, T:0.71
Consensus pattern (20 bp):
TATTATTTGTTTCCTTCTAT
Found at i:81131124 original size:105 final size:105
Alignment explanation
Indices: 81130880--81131252 Score: 633
Period size: 105 Copynumber: 3.6 Consensus size: 105
81130870 TAACCGTTAT
* ** * *
81130880 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATTAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
81130945 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
81130984 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
81131049 ATTCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
81131089 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
81131154 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* * **
81131194 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCT
81131253 TTATATACAA
Statistics
Matches: 256, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
104 80 0.31
105 175 0.68
106 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:81133145 original size:22 final size:22
Alignment explanation
Indices: 81133120--81133172 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
81133110 AATCGCACAC
*
81133120 GGCCGTGTGGGCTT-AATGGCCA
1 GGCCGTGTGGG-TTGAATAGCCA
*
81133142 GGCCGTGTGGGTTGAATAGCTA
1 GGCCGTGTGGGTTGAATAGCCA
81133164 GGCCGTGTG
1 GGCCGTGTG
81133173 AATCGTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.13, C:0.19, G:0.43, T:0.25
Consensus pattern (22 bp):
GGCCGTGTGGGTTGAATAGCCA
Found at i:81135158 original size:17 final size:17
Alignment explanation
Indices: 81135136--81135182 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
81135126 AAAATAAAAT
* * *
81135136 AATAAAATTGAAATGAA
1 AATAAAAATCAAAAGAA
81135153 AATAAAAATCAAAAGAA
1 AATAAAAATCAAAAGAA
81135170 AATAAAAAT-AAAA
1 AATAAAAATCAAAA
81135183 TAAGGCTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 4 0.15
17 23 0.85
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.17
Consensus pattern (17 bp):
AATAAAAATCAAAAGAA
Found at i:81169134 original size:28 final size:27
Alignment explanation
Indices: 81169079--81169190 Score: 140
Period size: 27 Copynumber: 4.1 Consensus size: 27
81169069 AGCATGGTTG
* *
81169079 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
81169105 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
81169133 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
*
81169160 CCA-AATCAGATAATTGTGGCATAGCCA
1 CCAGAA-CAGATAATTGTGGCAGAGCCA
81169187 CCAG
1 CCAG
81169191 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.13
27 47 0.63
28 18 0.24
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:81170456 original size:22 final size:22
Alignment explanation
Indices: 81170429--81170471 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
81170419 ACAGAAGAAG
* *
81170429 AAAAGAATAACAAATGGAGAGA
1 AAAAGAAAAACAAAAGGAGAGA
*
81170451 AAAAGAAAAATAAAAGGAGAG
1 AAAAGAAAAACAAAAGGAGAG
81170472 GAAGAGTGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.23, T:0.07
Consensus pattern (22 bp):
AAAAGAAAAACAAAAGGAGAGA
Found at i:81176933 original size:27 final size:26
Alignment explanation
Indices: 81176898--81177009 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
81176888 AGCATGGTTG
* *
81176898 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
81176924 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
81176952 CTAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
81176979 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
81177006 CCAG
1 CCAG
81177010 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:81176992 original size:54 final size:54
Alignment explanation
Indices: 81176900--81177006 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
81176890 CATGGTTGCC
* *
81176900 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACT
1 AGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
* * *
81176954 AGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCAC
1 AGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
81177007 CAGGACGCTT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (54 bp):
AGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
Found at i:81178917 original size:42 final size:42
Alignment explanation
Indices: 81178858--81178942 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
81178848 GTTACATAAT
*
81178858 TAGCCGAGGCTATAATTGTATCGCACACGTAGTGCTAGTTAA
1 TAGCCGAGGCTATAATTGTATCGCACACGTAGTGCTAATTAA
* *
81178900 TAGCCGAGGCTATAATTGTGTCGCACACTTAGTGCTAATTAA
1 TAGCCGAGGCTATAATTGTATCGCACACGTAGTGCTAATTAA
81178942 T
1 T
81178943 TAAATCGAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (42 bp):
TAGCCGAGGCTATAATTGTATCGCACACGTAGTGCTAATTAA
Found at i:81184725 original size:13 final size:13
Alignment explanation
Indices: 81184707--81184741 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
81184697 AACCAATTTG
*
81184707 AGGCACAGGGCCA
1 AGGCACACGGCCA
81184720 AGGCACACGGCCA
1 AGGCACACGGCCA
81184733 AGGCACACG
1 AGGCACACG
81184742 ACCGTGGCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.31, C:0.34, G:0.34, T:0.00
Consensus pattern (13 bp):
AGGCACACGGCCA
Found at i:81185242 original size:62 final size:62
Alignment explanation
Indices: 81185145--81185268 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
81185135 CCAATATTAG
81185145 CCACCATCCATGGCATTATACAAAATGACTAAAGAGCTATGACAAGCCACTCATTTTTCCCA
1 CCACCATCCATGGCATTATACAAAATGACTAAAGAGCTATGACAAGCCACTCATTTTTCCCA
81185207 CCACCATCCATGGCATTATACAAAATGACTAAAGAGCTATGACAAGCCACTCATTTTTCCCA
1 CCACCATCCATGGCATTATACAAAATGACTAAAGAGCTATGACAAGCCACTCATTTTTCCCA
81185269 AAACAATGTG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.35, C:0.29, G:0.11, T:0.24
Consensus pattern (62 bp):
CCACCATCCATGGCATTATACAAAATGACTAAAGAGCTATGACAAGCCACTCATTTTTCCCA
Found at i:81185987 original size:49 final size:49
Alignment explanation
Indices: 81185875--81186009 Score: 146
Period size: 49 Copynumber: 2.8 Consensus size: 49
81185865 ACTGGCTAGC
* *
81185875 ACATCAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCAT
1 ACATCGAAGTCGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCAT
* * * * **
81185924 ACATCGAAGCCGATGTCGTGTCCTAGACAGGTCTTACACTGGCTCTCAT
1 ACATCGAAGTCGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCAT
** * *
81185973 -CTATCGGTGTCGATGCCATGTCCCAAACAGTTCTTAC
1 AC-ATCGAAGTCGATGCCATGTCCCAGACAGGTCTTAC
81186010 TCTGACACTC
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
48 1 0.01
49 68 0.99
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
ACATCGAAGTCGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCAT
Found at i:81190468 original size:24 final size:24
Alignment explanation
Indices: 81190423--81190468 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
81190413 AATTTAAATT
* *
81190423 TTTATTTTCTTCTCTAATTTTTCA
1 TTTATTTTCTTCTCGAAGTTTTCA
81190447 TTTATTTTCTTCT-GACAGTTTT
1 TTTATTTTCTTCTCGA-AGTTTT
81190469 TTTTAGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.15, C:0.15, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTATTTTCTTCTCGAAGTTTTCA
Found at i:81213103 original size:49 final size:47
Alignment explanation
Indices: 81213002--81213216 Score: 156
Period size: 49 Copynumber: 4.6 Consensus size: 47
81212992 AAATACTGAC
* ** ** * *
81213002 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCGAT
1 GCCATGTCCTAGACA-GGTCTTACACTAACTTTCACATCGAAGCCGAT
81213050 GCCATGTCCTAGACAGGTCTTACACTAACTTTCATACATCGAAGCCGAT
1 GCCATGTCCTAGACAGGTCTTACACTAACTTTC--ACATCGAAGCCGAT
* * * *
81213099 GCCATATACC-AGACAGGTCTTACACTAGCTCTCATCTATCGATA-TCGAT
1 GCCATGT-CCTAGACAGGTCTTACACTAACTTTCA-C-ATCGA-AGCCGAT
* * * * *
81213148 G-CATGTCCTAGACAAGTTTTACACTGACATTCA-A--GAAGCTGAT
1 GCCATGTCCTAGACAGGTCTTACACTAACTTTCACATCGAAGCCGAT
* *
81213191 GCCATGTCCAAGACA-ATCTTACACTA
1 GCCATGTCCTAGACAGGTCTTACACTA
81213217 GCTTGTATAT
Statistics
Matches: 134, Mismatches: 24, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.01
43 14 0.10
44 12 0.09
45 1 0.01
47 17 0.13
48 37 0.28
49 49 0.37
50 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (47 bp):
GCCATGTCCTAGACAGGTCTTACACTAACTTTCACATCGAAGCCGAT
Found at i:81213288 original size:46 final size:45
Alignment explanation
Indices: 81213233--81213358 Score: 166
Period size: 46 Copynumber: 2.8 Consensus size: 45
81213223 ATATCTCAAG
*
81213233 GCTGATGCATGTCCCAAACTTGTCTTACACTAGCTCTCGTCTCAATGT
1 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCG--T-AATGT
* *
81213281 -C-GATGCATGTTCCAAACATGTCTTACACTGGCTCTCGTAATGT
1 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTAATGT
*
81213324 GGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 -GCTGATGCATGTCCCAAACATGTCTTACACTAGC
81213359 ACACATATCA
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
43 5 0.07
44 1 0.01
45 1 0.01
46 61 0.88
47 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (45 bp):
GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTAATGT
Found at i:81225425 original size:27 final size:27
Alignment explanation
Indices: 81225339--81225442 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 27
81225329 TGGCTGCCAG
* * * *
81225339 AACAGATAA-TGTGACAAAGTCACCAG
1 AACAGATAATTGTGGCAGAGCCACCAC
** *
81225365 ATACAGATAATCATGGCAGAGCCACCAG
1 A-ACAGATAATTGTGGCAGAGCCACCAC
*
81225393 AACAGAT-ATATGTGGCAGAGCCACTAC
1 AACAGATAAT-TGTGGCAGAGCCACCAC
* *
81225420 ATCAGATAATTGTGGCATAGCCA
1 AACAGATAATTGTGGCAGAGCCA
81225443 TCAGGACGCT
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
26 3 0.05
27 45 0.71
28 15 0.24
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.18
Consensus pattern (27 bp):
AACAGATAATTGTGGCAGAGCCACCAC
Found at i:81225856 original size:16 final size:15
Alignment explanation
Indices: 81225835--81225865 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
81225825 CAAAATATCA
81225835 GCTTTTCGGCATTTTG
1 GCTTTTCGGC-TTTTG
81225851 GCTTTTCGGCTTTTG
1 GCTTTTCGGCTTTTG
81225866 CTGATCTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.03, C:0.19, G:0.26, T:0.52
Consensus pattern (15 bp):
GCTTTTCGGCTTTTG
Found at i:81232001 original size:27 final size:27
Alignment explanation
Indices: 81231966--81232030 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
81231956 ACAATGTGAT
*
81231966 AGAGTCACCAGATAAGATAATCGTGGC
1 AGAGCCACCAGATAAGATAATCGTGGC
* *
81231993 AGAGCCACCAGATCAGATAATTGTGGC
1 AGAGCCACCAGATAAGATAATCGTGGC
*
81232020 ATAGCCACCAG
1 AGAGCCACCAG
81232031 GACGCTTCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
AGAGCCACCAGATAAGATAATCGTGGC
Found at i:81239865 original size:23 final size:23
Alignment explanation
Indices: 81239839--81239947 Score: 173
Period size: 23 Copynumber: 4.7 Consensus size: 23
81239829 ATACACGGAT
* *
81239839 TCCAACCAAACACACCAAAATAA
1 TCCACCCAAACACACCAGAATAA
*
81239862 TCCAACCAAACACACCAGAATAA
1 TCCACCCAAACACACCAGAATAA
*
81239885 GCCACCCAAACACACCAGAATAA
1 TCCACCCAAACACACCAGAATAA
81239908 TCCACCCAAACACACCAGAATAA
1 TCCACCCAAACACACCAGAATAA
*
81239931 ACCACCCAAACACACCA
1 TCCACCCAAACACACCA
81239948 AAACGGCACT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 81 1.00
ACGTcount: A:0.50, C:0.39, G:0.04, T:0.06
Consensus pattern (23 bp):
TCCACCCAAACACACCAGAATAA
Found at i:81240243 original size:20 final size:20
Alignment explanation
Indices: 81240218--81240262 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
81240208 CAGTAAAATG
81240218 TTTTCTTGAAAATGATTTAC
1 TTTTCTTGAAAATGATTTAC
*
81240238 TTTTC-TGGAAATGATTTAC
1 TTTTCTTGAAAATGATTTAC
81240257 TTTTCT
1 TTTTCT
81240263 AGTGTTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.53
Consensus pattern (20 bp):
TTTTCTTGAAAATGATTTAC
Found at i:81240366 original size:18 final size:18
Alignment explanation
Indices: 81240340--81240382 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
81240330 AAAAGCTGTC
*
81240340 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
81240358 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
81240376 TTTATAT
1 TTTATAT
81240383 TTTAAATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:81240681 original size:29 final size:29
Alignment explanation
Indices: 81240648--81240705 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
81240638 TAACAACAAT
81240648 ATTGTCCAAGCGCATAACTAATATTACAC
1 ATTGTCCAAGCGCATAACTAATATTACAC
*
81240677 ATTGTCCAAGTGCATAACTAATATTACAC
1 ATTGTCCAAGCGCATAACTAATATTACAC
81240706 CACATTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (29 bp):
ATTGTCCAAGCGCATAACTAATATTACAC
Found at i:81241698 original size:32 final size:32
Alignment explanation
Indices: 81241657--81241749 Score: 159
Period size: 32 Copynumber: 2.9 Consensus size: 32
81241647 TTTCAATCAT
*
81241657 TTCAATATCCAACAAGTTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
81241689 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
* *
81241721 TTCAACATCTAACAAGCTTAAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
81241750 CAATATCTAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 58 1.00
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.27
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:81246092 original size:3 final size:3
Alignment explanation
Indices: 81246084--81246132 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
81246074 TAAAGCATAA
81246084 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
81246132 A
1 A
81246133 TTCTTCAACA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:81246169 original size:17 final size:17
Alignment explanation
Indices: 81246147--81246183 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
81246137 TCAACAGACT
81246147 GATGCAAAATCCAAACA
1 GATGCAAAATCCAAACA
*
81246164 GATGCAAAATCCAAATA
1 GATGCAAAATCCAAACA
81246181 GAT
1 GAT
81246184 TCTTCAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.51, C:0.19, G:0.14, T:0.16
Consensus pattern (17 bp):
GATGCAAAATCCAAACA
Found at i:81251065 original size:12 final size:13
Alignment explanation
Indices: 81251047--81251101 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
81251037 ATAAAATATG
81251047 ATATTTAATAATA
1 ATATTTAATAATA
81251060 AT-TTTAA-AATA
1 ATATTTAATAATA
* *
81251071 GTATTTAATATACA
1 ATATTTAATA-ATA
*
81251085 ATATATAATATATA
1 ATATTTAATA-ATA
81251099 ATA
1 ATA
81251102 ACAAAAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
11 5 0.15
12 10 0.29
13 3 0.09
14 16 0.47
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:81251262 original size:21 final size:23
Alignment explanation
Indices: 81251204--81251262 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
81251194 AAATTATATT
*
81251204 TATA-ATAAAATAA-TTATATAA
1 TATATATAAAATAAGTTATAGAA
81251225 TATATATAAATATAAGTT-TAGAA
1 TATATATAAA-ATAAGTTATAGAA
81251248 TA-ATATAAAATAAGT
1 TATATATAAAATAAGT
81251263 AATTAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 10 0.29
22 12 0.35
23 10 0.29
24 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
TATATATAAAATAAGTTATAGAA
Found at i:81251436 original size:14 final size:15
Alignment explanation
Indices: 81251387--81251628 Score: 68
Period size: 15 Copynumber: 15.9 Consensus size: 15
81251377 TTAAAACCTT
81251387 TAATGATAATAAT-ATA
1 TAAT-ATAA-AATAATA
*
81251403 TAGATAAAAAATATATAA
1 TA-ATATAAAATA-AT-A
*
81251421 TAGTATAAAAATAATA
1 TAATAT-AAAATAATA
81251437 TAATATAAAATAATTA
1 TAATATAAAATAA-TA
*
81251453 TAATATAATATGAA-A
1 TAATATAAAAT-AATA
**
81251468 GTATATATGTAA-AA-A
1 -TA-ATATAAAATAATA
*
81251483 TAATATATAATATATA
1 TAATATAAAATA-ATA
*
81251499 TAAT-TAATA-AATA
1 TAATATAAAATAATA
* *
81251512 TATTATACAAGTAA-A
1 TAATATA-AAATAATA
81251527 -AATATAATAATAATA
1 TAATATAA-AATAATA
*
81251542 T-ATA-AATAATAATG
1 TAATATAA-AATAATA
*
81251556 TAA-A-ACAATAATA
1 TAATATAAAATAATA
* *
81251569 T-TTCCTGAAAAGTAATA
1 TAAT-AT-AAAA-TAATA
81251586 T-ATA-ATAAATAATAA
1 TAATATA-AAATAAT-A
81251601 TAATAT-AAATAATA
1 TAATATAAAATAATA
81251615 T-ATAATAAAATAAT
1 TAAT-ATAAAATAAT
81251629 TATATAATAT
Statistics
Matches: 172, Mismatches: 24, Indels: 61
0.67 0.09 0.24
Matches are distributed among these distances:
13 23 0.13
14 36 0.21
15 44 0.26
16 38 0.22
17 22 0.13
18 9 0.05
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (15 bp):
TAATATAAAATAATA
Found at i:81251518 original size:20 final size:19
Alignment explanation
Indices: 81251399--81251549 Score: 68
Period size: 19 Copynumber: 7.8 Consensus size: 19
81251389 ATGATAATAA
*
81251399 TATATAGATAAAAAATATAT
1 TATATA-ATAATAAATATAT
*
81251419 AATAGT-ATAA-AAATAATAT
1 TATA-TAATAATAAAT-ATAT
*
81251438 AATATAA-AAT-AAT-TAT
1 TATATAATAATAAATATAT
*
81251454 AATATAAT-ATGAAAGTATA-
1 TATATAATAAT-AAA-TATAT
* *
81251473 TATGTAAAAATAATATATAAT
1 TATATAATAATAA-ATAT-AT
81251494 ATATATAATTAATAAATATAT
1 -TATATAA-TAATAAATATAT
* *
81251515 TATACAAGTAA-AAATATAA
1 TATATAA-TAATAAATATAT
81251534 TA-ATAATATATAAATA
1 TATATAATA-ATAAATA
81251550 ATAATGTAAA
Statistics
Matches: 104, Mismatches: 10, Indels: 35
0.70 0.07 0.23
Matches are distributed among these distances:
16 12 0.12
17 2 0.02
18 16 0.15
19 38 0.37
20 18 0.17
21 3 0.03
22 10 0.10
23 5 0.05
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (19 bp):
TATATAATAATAAATATAT
Found at i:81251599 original size:3 final size:3
Alignment explanation
Indices: 81251581--81251643 Score: 51
Period size: 3 Copynumber: 20.3 Consensus size: 3
81251571 TCCTGAAAAG
81251581 TAA TATA TAA TAAA TAA TAA TAA T-A TAAA TAA TATA TAA TAA -AA TAA
1 TAA TA-A TAA T-AA TAA TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA
*
81251628 TTA T-A TAA TATA TAA T
1 TAA TAA TAA TA-A TAA T
81251644 CTGAAAATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 16
0.75 0.01 0.24
Matches are distributed among these distances:
2 6 0.12
3 31 0.61
4 14 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:81251615 original size:27 final size:24
Alignment explanation
Indices: 81251585--81251643 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 24
81251575 GAAAAGTAAT
81251585 ATATAATAAATAATAATAATATAAATA
1 ATATAAT-AATAA-AATAAT-TAAATA
*
81251612 ATAT-ATAATAAAATAATTATATA
1 ATATAATAATAAAATAATTAAATA
81251635 ATAT-ATAAT
1 ATATAATAAT
81251644 CTGAAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 14 0.45
24 6 0.19
25 5 0.16
26 2 0.06
27 4 0.13
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
ATATAATAATAAAATAATTAAATA
Found at i:81251642 original size:15 final size:15
Alignment explanation
Indices: 81251584--81251643 Score: 70
Period size: 15 Copynumber: 4.0 Consensus size: 15
81251574 TGAAAAGTAA
81251584 TATATAATAAATAAT
1 TATATAATAAATAAT
*
81251599 AATA-ATATAAATAA-
1 TATATA-ATAAATAAT
81251613 TATATAATAAAATAAT
1 TATATAAT-AAATAAT
*
81251629 TATATAATATATAAT
1 TATATAATAAATAAT
81251644 CTGAAAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 6 0.16
15 24 0.63
16 8 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TATATAATAAATAAT
Found at i:81253811 original size:206 final size:205
Alignment explanation
Indices: 81253402--81253954 Score: 831
Period size: 206 Copynumber: 2.7 Consensus size: 205
81253392 AATCTATTTT
*
81253402 TTTGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACG
1 TTTGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACG
* * * *
81253467 TGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
* * ** * * * *
81253532 GGTCTTGTTTCAGTGAAATTATCTGAAGGTGAGATCTGTTATGTGTCTGCTCTCCGTTGAAATGG
131 GATC-TGCTTCAGTGAAAACATCTGAAGGTGAGATCTGGTACGTGTCTGCCCTCCGTCGAAATGG
81253597 AGATGCCAGAC
195 AGATGCCAGAC
* *
81253608 TTTGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACG
1 TTTGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACG
* *
81253673 TGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGCAAGCACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
* * *
81253738 GATCTACTTCAGT-ATAAACATCTGAAGGGTG-GATCTGGTACGTGTCTGCCCTCTGTCGAAGTG
131 GATCTGCTTCAGTGA-AAACATCTGAA-GGTGAGATCTGGTACGTGTCTGCCCTCCGTCGAAATG
*
81253801 GAGAATGCCAGGC
194 GAG-ATGCCAGAC
* * *
81253814 TTCGATTTGTTCTCTGACAATACACAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACA
1 TTTGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACG
*
81253879 TGAAAGCCAAATCAGCTATGTCTTCGATTTTCTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
81253944 GATCTGCTTCA
131 GATCTGCTTCA
81253955 ACCAGATCTG
Statistics
Matches: 315, Mismatches: 29, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
204 1 0.00
205 45 0.14
206 269 0.85
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (205 bp):
TTTGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACG
TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
GATCTGCTTCAGTGAAAACATCTGAAGGTGAGATCTGGTACGTGTCTGCCCTCCGTCGAAATGGA
GATGCCAGAC
Found at i:81262985 original size:40 final size:40
Alignment explanation
Indices: 81262941--81263165 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
81262931 GCTCCTCGTT
* *
81262941 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
81262981 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
81263021 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
81263060 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
81263100 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
81263141 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81263166 CATCATTCAA
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 118 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81263041 original size:79 final size:78
Alignment explanation
Indices: 81262941--81263165 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
81262931 GCTCCTCGTT
* * *
81262941 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
81263006 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * *
81263021 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
*
81263085 ATTTAGTATCTCGCA
64 ATTTAGTAACTCGCA
* * * * *
81263100 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
81263164 GA
63 GA
81263166 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.03
79 66 0.53
80 42 0.34
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:81265024 original size:20 final size:20
Alignment explanation
Indices: 81264999--81265038 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
81264989 TCACACATTC
*
81264999 ATAATTA-CATATTCTAGACA
1 ATAATTATCACATTC-AGACA
81265019 ATAATTATCACATTCAGACA
1 ATAATTATCACATTCAGACA
81265039 TTTCGGTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (20 bp):
ATAATTATCACATTCAGACA
Found at i:81269340 original size:12 final size:13
Alignment explanation
Indices: 81269322--81269376 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
81269312 ATAAAATATG
81269322 ATATTTAATAATA
1 ATATTTAATAATA
81269335 AT-TTTAA-AATA
1 ATATTTAATAATA
* *
81269346 GTATTTAATATACA
1 ATATTTAATA-ATA
*
81269360 ATATATAATATATA
1 ATATTTAATA-ATA
81269374 ATA
1 ATA
81269377 ACAAAAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
11 5 0.15
12 10 0.29
13 3 0.09
14 16 0.47
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:81269537 original size:21 final size:23
Alignment explanation
Indices: 81269479--81269537 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
81269469 AATTTATATT
*
81269479 TATA-ATAAAATAA-TTATATAA
1 TATATATAAAATAAGTTATAGAA
81269500 TATATATAAATATAAGTT-TAGAA
1 TATATATAAA-ATAAGTTATAGAA
81269523 TA-ATATAAAATAAGT
1 TATATATAAAATAAGT
81269538 AATTAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 10 0.29
22 12 0.35
23 10 0.29
24 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
TATATATAAAATAAGTTATAGAA
Found at i:81269720 original size:16 final size:17
Alignment explanation
Indices: 81269699--81269735 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
81269689 TATATAATAG
81269699 TATAAAAATAA-TATAA
1 TATAAAAATAATTATAA
81269715 TAT-AAAATAATTATAA
1 TATAAAAATAATTATAA
81269731 TATAA
1 TATAA
81269736 TATGAAAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 11 0.58
17 1 0.05
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TATAAAAATAATTATAA
Found at i:81269779 original size:13 final size:14
Alignment explanation
Indices: 81269752--81269925 Score: 50
Period size: 13 Copynumber: 12.4 Consensus size: 14
81269742 AGCATATATG
*
81269752 TAAAAATAATATAA
1 TAAATATAATATAA
*
81269766 TATATATAAT-TAA
1 TAAATATAATATAA
*
81269779 TAAATATATTATACAA
1 TAAATATA--ATATAA
*
81269795 GTAAAAAT-ATAATAA
1 -TAAATATAAT-ATAA
81269810 TAATATATAA-ATAA
1 TAA-ATATAATATAA
* *
81269824 T-AATGTAAAATAA
1 TAAATATAATATAA
* *
81269837 T-AATAT-TTCGTGAA
1 TAAATATAAT-AT-AA
*
81269851 -AAGTA-ATATATAA
1 TAAATATA-ATATAA
*
81269864 TAAATATAA-ACAA
1 TAAATATAATATAA
81269877 TATAA-ATAATACATAA
1 TA-AATATAAT--ATAA
81269893 TAAA-ATAAT-TATA
1 TAAATATAATATA-A
81269906 TAATATATAATATAA
1 TAA-ATATAATATAA
81269921 -AAATA
1 TAAATA
81269926 AGGTTAAAAA
Statistics
Matches: 119, Mismatches: 18, Indels: 47
0.65 0.10 0.26
Matches are distributed among these distances:
12 7 0.06
13 39 0.33
14 34 0.29
15 23 0.19
16 10 0.08
17 6 0.05
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (14 bp):
TAAATATAATATAA
Found at i:81269908 original size:16 final size:16
Alignment explanation
Indices: 81269875--81269917 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
81269865 AAATATAAAC
81269875 AATATAAATAATACAT
1 AATATAAATAATACAT
*
81269891 AATA-AAATAATTATAT
1 AATATAAATAA-TACAT
81269907 AATATATAATA
1 AATATA-AATA
81269918 TAAAAATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 6 0.26
16 12 0.52
17 1 0.04
18 4 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATAAATAATACAT
Found at i:81271467 original size:4 final size:4
Alignment explanation
Indices: 81271460--81271496 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
81271450 ATAAACAAAC
81271460 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
81271497 AGGCCCGGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:81273095 original size:9 final size:8
Alignment explanation
Indices: 81273080--81273111 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
81273070 AATAATATGC
81273080 ATTTTTTT
1 ATTTTTTT
81273088 ATTTTTTT
1 ATTTTTTT
81273096 ATTTTTTT
1 ATTTTTTT
*
81273104 CTTTTTTT
1 ATTTTTTT
81273112 TGAATAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (8 bp):
ATTTTTTT
Found at i:81274113 original size:17 final size:17
Alignment explanation
Indices: 81274073--81274127 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 17
81274063 TACAAGTCTT
81274073 TAAAAGAT-AATAAGAAACA
1 TAAAAGATAAAT-A-AAA-A
81274092 TAAAAGATAAATAAAAA
1 TAAAAGATAAATAAAAA
81274109 TAAAA-ATAAAATAAAAA
1 TAAAAGAT-AAATAAAAA
81274126 TA
1 TA
81274128 GGAATAGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.06
17 17 0.50
18 3 0.09
19 9 0.26
20 3 0.09
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (17 bp):
TAAAAGATAAATAAAAA
Found at i:81274126 original size:23 final size:23
Alignment explanation
Indices: 81274073--81274147 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
81274063 TACAAGTCTT
* * *
81274073 TAAAAGATAATAAGAAACATAAAA
1 TAAAA-ATAAAAATAAAAATAAAA
* *
81274097 GATAAATAAAAATAAAAATAAAA
1 TAAAAATAAAAATAAAAATAAAA
** * *
81274120 TAAAAATAGGAATAGAAATAAGA
1 TAAAAATAAAAATAAAAATAAAA
81274143 TAAAA
1 TAAAA
81274148 CAAGAAGACA
Statistics
Matches: 40, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
23 37 0.93
24 3 0.08
ACGTcount: A:0.72, C:0.01, G:0.09, T:0.17
Consensus pattern (23 bp):
TAAAAATAAAAATAAAAATAAAA
Found at i:81274133 original size:12 final size:11
Alignment explanation
Indices: 81274100--81274147 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
81274090 CATAAAAGAT
81274100 AAATAAAAATAA
1 AAAT-AAAATAA
81274112 AAATAAAATAA
1 AAATAAAATAA
* *
81274123 AAATAGGAATAG
1 AAATA-AAATAA
*
81274135 AAATAAGATAA
1 AAATAAAATAA
81274146 AA
1 AA
81274148 CAAGAAGACA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 17 0.57
12 13 0.43
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:81274133 original size:17 final size:18
Alignment explanation
Indices: 81274100--81274140 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
81274090 CATAAAAGAT
81274100 AAATAAAAATAAAAATA-
1 AAATAAAAATAAAAATAG
**
81274117 AAATAAAAATAGGAATAG
1 AAATAAAAATAAAAATAG
81274135 AAATAA
1 AAATAA
81274141 GATAAAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (18 bp):
AAATAAAAATAAAAATAG
Found at i:81281820 original size:19 final size:18
Alignment explanation
Indices: 81281793--81281833 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
81281783 TTATAATTTA
81281793 TTTAAATTTAAAATATAC
1 TTTAAATTTAAAATATAC
* *
81281811 TTTAATATTTATAATGTAC
1 TTTAA-ATTTAAAATATAC
81281830 TTTA
1 TTTA
81281834 TCAATTGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.51
Consensus pattern (18 bp):
TTTAAATTTAAAATATAC
Found at i:81284681 original size:61 final size:59
Alignment explanation
Indices: 81284611--81284788 Score: 150
Period size: 61 Copynumber: 2.9 Consensus size: 59
81284601 TTGTTAAATT
*
81284611 ATATTTAATAATAATTATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGA
1 ATATTTAATAATAA-TATTTTATA-TATTATATATTATGATTTTAATAAATTCATATAAGA
* * * * * *
81284672 ATATTTAATACTAAGAATTTTATTAAATTATATATT-T--TTGTTAAATTATATTTA-ATAATA
1 ATATTTAATAATAA-TATTTTA-TATATTATATATTATGATT-TT-AA-TAAATTCATATAAGA
* * *
81284732 ATTATTTTA-AATTATATTTTATAATATTATATATTATAATTTTAATAAATTCATATA
1 A-TATTTAATAATAATATTTTAT-ATATTATATATTATGATTTTAATAAATTCATATA
81284789 TTTTATCAAA
Statistics
Matches: 92, Mismatches: 15, Indels: 21
0.72 0.12 0.16
Matches are distributed among these distances:
58 3 0.03
59 25 0.27
60 17 0.18
61 43 0.47
62 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (59 bp):
ATATTTAATAATAATATTTTATATATTATATATTATGATTTTAATAAATTCATATAAGA
Found at i:81284741 original size:26 final size:25
Alignment explanation
Indices: 81284703--81284761 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
81284693 ATTAAATTAT
*
81284703 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
81284729 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
81284755 ATATTAT
1 ATATTAT
81284762 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:81284760 original size:15 final size:15
Alignment explanation
Indices: 81284716--81284771 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
81284706 TTTTTGTTAA
*
81284716 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
81284731 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
81284742 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
81284757 ATTATATATTATAAT
1 ATTATATTTTATAAT
81284772 TTTAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:81284787 original size:24 final size:22
Alignment explanation
Indices: 81284742--81284810 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
81284732 ATTATTTTAA
81284742 ATTATATTTTATAATATTATAT
1 ATTATATTTTATAATATTATAT
* *
81284764 ATTATAATTT-TAATA-AAT-T
1 ATTATATTTTATAATATTATAT
81284783 CA-TATATTTTATCAA-ATTATAT
1 -ATTATATTTTAT-AATATTATAT
81284805 ATTATA
1 ATTATA
81284811 AAAAAATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
19 8 0.22
20 5 0.14
21 10 0.27
22 14 0.38
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATATTTTATAATATTATAT
Found at i:81284806 original size:17 final size:17
Alignment explanation
Indices: 81284688--81284828 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
81284678 AATACTAAGA
*
81284688 ATTTTATTAAATTATAT
1 ATTTTAATAAATTATAT
**
81284705 ATTTTTGTTAAA-T-TAT
1 A-TTTTAATAAATTATAT
*
81284721 A-TTTAAT-AATAAT-T
1 ATTTTAATAAATTATAT
* *
81284735 ATTTTAAATTATATTTTAT
1 ATTTT-AA-TAAATTATAT
* *
81284754 AATATT-ATATATTATA-
1 -ATTTTAATAAATTATAT
81284770 ATTTTAATAAATTCATAT
1 ATTTTAATAAATT-ATAT
81284788 ATTTT-ATCAAATTATAT
1 ATTTTAAT-AAATTATAT
* *
81284805 ATTATAA-AAA-AATAT
1 ATTTTAATAAATTATAT
81284820 A-TTTAATAA
1 ATTTTAATAA
81284829 TAATTATGTT
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
13 2 0.02
14 10 0.11
15 15 0.16
16 15 0.16
17 24 0.25
18 24 0.25
19 1 0.01
20 4 0.04
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (17 bp):
ATTTTAATAAATTATAT
Found at i:81285071 original size:16 final size:16
Alignment explanation
Indices: 81285050--81285101 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
81285040 GATTTGCTAT
81285050 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
81285066 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
81285082 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
81285098 TACA
1 TACA
81285102 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:81288330 original size:35 final size:36
Alignment explanation
Indices: 81288273--81288340 Score: 88
Period size: 35 Copynumber: 1.9 Consensus size: 36
81288263 TAATATGTTT
*
81288273 ATATTATATTTTTATATATAT-AATATTAATTTCAC
1 ATATTATATTTTTATATATATAAAAATTAATTTCAC
81288308 ATATTAT-TTTTTAT-TAATTATAAAAATTAATTT
1 ATATTATATTTTTATAT-A-TATAAAAATTAATTT
81288341 TAACATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 1 0.03
34 8 0.28
35 10 0.34
36 10 0.34
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (36 bp):
ATATTATATTTTTATATATATAAAAATTAATTTCAC
Found at i:81288953 original size:15 final size:15
Alignment explanation
Indices: 81288933--81288962 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81288923 ATAATTTTTA
81288933 ATTTTTTAAAAATAT
1 ATTTTTTAAAAATAT
*
81288948 ATTTTTTAGAAATAT
1 ATTTTTTAAAAATAT
81288963 TAAAAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
ATTTTTTAAAAATAT
Found at i:81289300 original size:18 final size:19
Alignment explanation
Indices: 81289277--81289312 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
81289267 TAATAGGGCG
*
81289277 AATAAAAGAT-TTATTAAA
1 AATAAAAAATGTTATTAAA
81289295 AATAAAAAATGTTATTAA
1 AATAAAAAATGTTATTAA
81289313 TTTCCAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (19 bp):
AATAAAAAATGTTATTAAA
Found at i:81302579 original size:33 final size:33
Alignment explanation
Indices: 81302482--81302580 Score: 162
Period size: 33 Copynumber: 3.0 Consensus size: 33
81302472 TTTCTTCTTG
*
81302482 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
* *
81302515 ACATTCCAGCTCCTGTACAGCAGCAAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
*
81302548 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
81302581 CTACTCAATC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.32, C:0.40, G:0.10, T:0.17
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
Found at i:81306638 original size:42 final size:42
Alignment explanation
Indices: 81306579--81306666 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
81306569 GGCATTTGGA
81306579 CCATCAGTGGGTAAACCGTAGTTGAAGGATAGGGGAAATCTT
1 CCATCAGTGGGTAAACCGTAGTTGAAGGATAGGGGAAATCTT
81306621 CCATCAGTGGGTAAACCGTAGTTGAAGGATAGGGGAAATCTT
1 CCATCAGTGGGTAAACCGTAGTTGAAGGATAGGGGAAATCTT
81306663 CCAT
1 CCAT
81306667 ATGTTTCAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.24
Consensus pattern (42 bp):
CCATCAGTGGGTAAACCGTAGTTGAAGGATAGGGGAAATCTT
Found at i:81315596 original size:3 final size:3
Alignment explanation
Indices: 81315588--81315682 Score: 88
Period size: 3 Copynumber: 31.7 Consensus size: 3
81315578 AAAGGAAAAT
* * *
81315588 ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA A-A AGGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
* * *
81315633 ATA ATA AT- ATA TTA GATA GTA AAA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
81315678 ATA AT
1 ATA AT
81315683 GTAGTAAAAA
Statistics
Matches: 74, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
2 5 0.07
3 65 0.88
4 2 0.03
5 2 0.03
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:81315603 original size:26 final size:25
Alignment explanation
Indices: 81315536--81315677 Score: 87
Period size: 26 Copynumber: 5.5 Consensus size: 25
81315526 ATTGATAATA
*
81315536 ATAATAATAGTAGTAAAAATAAAA-
1 ATAATAATAATAGTAAAAATAAAAT
* *
81315560 ATAAT-ATAGTGACGGTAAAAAGGAAAAT
1 ATAATAATAAT-A--GTAAAAA-TAAAAT
* *
81315588 ATAATAATAATAGTAATAATACAAT
1 ATAATAATAATAGTAAAAATAAAAT
**
81315613 AGTAATAATAATA--AAAGGTAATAAT
1 A-TAATAATAATAGTAAAAATAA-AAT
*
81315638 A-ATATATTAGATAGTAAAAATAATAAT
1 ATA-ATAATA-ATAGTAAAAATAA-AAT
81315665 AATAATAATAATA
1 -ATAATAATAATA
81315678 ATAATGTAGT
Statistics
Matches: 91, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
23 6 0.07
24 15 0.16
25 12 0.13
26 24 0.26
27 17 0.19
28 12 0.13
29 5 0.05
ACGTcount: A:0.61, C:0.01, G:0.10, T:0.28
Consensus pattern (25 bp):
ATAATAATAATAGTAAAAATAAAAT
Found at i:81315613 original size:17 final size:17
Alignment explanation
Indices: 81315593--81315680 Score: 63
Period size: 17 Copynumber: 4.9 Consensus size: 17
81315583 AAAATATAAT
*
81315593 AATAATAGTAATAATAC
1 AATAATAATAATAATAC
* *
81315610 AATAGTAATAATAATAA
1 AATAATAATAATAATAC
*
81315627 AAGGTAATAATAATATATTAG
1 AA--TAATAATAATA-A-TAC
*
81315648 ATAGTAAAAATAATAAT--
1 A-A-TAATAATAATAATAC
81315665 AATAATAATAATAATA
1 AATAATAATAATAATA
81315681 ATGTAGTAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
15 12 0.21
16 1 0.02
17 17 0.29
19 11 0.19
20 2 0.03
21 14 0.24
22 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (17 bp):
AATAATAATAATAATAC
Found at i:81315863 original size:22 final size:23
Alignment explanation
Indices: 81315810--81315864 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
81315800 AAAGAGAAAG
* * *
81315810 AAATAATAACATGATAATCTAAT
1 AAATAATAATATGACAATATAAT
81315833 -AATAATAATAT-ACAATATAAT
1 AAATAATAATATGACAATATAAT
81315854 AAATAATAATA
1 AAATAATAATA
81315865 GAAAAGGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.29
22 20 0.71
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (23 bp):
AAATAATAATATGACAATATAAT
Found at i:81318200 original size:7 final size:8
Alignment explanation
Indices: 81318185--81318223 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
81318175 AAAAAGGTAG
81318185 TATTTTTT
1 TATTTTTT
81318193 TA-TTTTT
1 TATTTTTT
81318200 TAGTATTTTT
1 TA-T-TTTTT
81318210 TATTTTTT
1 TATTTTTT
81318218 TATTTT
1 TATTTT
81318224 CGAAGTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
7 7 0.25
8 13 0.46
9 1 0.04
10 7 0.25
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (8 bp):
TATTTTTT
Done.