Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 242 of 311
Found at i:81318219 original size:18 final size:18
Alignment explanation
Indices: 81318182--81318217 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
81318172 TTTAAAAAGG
81318182 TAGTATTTTTTTATTTTT
1 TAGTATTTTTTTATTTTT
81318200 TAGTA-TTTTTTATTTTT
1 TAGTATTTTTTTATTTTT
81318217 T
1 T
81318218 TATTTTCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.78
Consensus pattern (18 bp):
TAGTATTTTTTTATTTTT
Found at i:81319797 original size:145 final size:145
Alignment explanation
Indices: 81319534--81319823 Score: 571
Period size: 145 Copynumber: 2.0 Consensus size: 145
81319524 ATACAAAGCC
81319534 AGCCTAAAAGACAATTTCCTATTGCCTTACATTGACACCTTAGTGGGCAACACGGCAGGTTATTC
1 AGCCTAAAAGACAATTTCCTATTGCCTTACATTGACACCTTAGTGGGCAACACGGCAGGTTATTC
81319599 ATTATTCTCCTTCATGGATCATTTATTCAGATACAACCAGATTAAAATGCATCCTAAAGATATGG
66 ATTATTCTCCTTCATGGATCATTTATTCAGATACAACCAGATTAAAATGCATCCTAAAGATATGG
81319664 AAAAGATGACATTCG
131 AAAAGATGACATTCG
81319679 AGCCTAAAAGACAATTTCCTATTGCCTTACATTGACACCTTAGTGGGCAACACGGCAGGTTATTC
1 AGCCTAAAAGACAATTTCCTATTGCCTTACATTGACACCTTAGTGGGCAACACGGCAGGTTATTC
*
81319744 ATTATTCTCCTTCATGGATCATTTATTCAGATACAACCAGATTAAGATGCATCCTAAAGATATGG
66 ATTATTCTCCTTCATGGATCATTTATTCAGATACAACCAGATTAAAATGCATCCTAAAGATATGG
81319809 AAAAGATGACATTCG
131 AAAAGATGACATTCG
81319824 TAACCATGTG
Statistics
Matches: 144, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 144 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (145 bp):
AGCCTAAAAGACAATTTCCTATTGCCTTACATTGACACCTTAGTGGGCAACACGGCAGGTTATTC
ATTATTCTCCTTCATGGATCATTTATTCAGATACAACCAGATTAAAATGCATCCTAAAGATATGG
AAAAGATGACATTCG
Found at i:81321937 original size:9 final size:9
Alignment explanation
Indices: 81321910--81321955 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
81321900 TGAGTTTTCG
*
81321910 AATTTGAAT
1 AATTCGAAT
* *
81321919 AACTCAAAT
1 AATTCGAAT
81321928 AATTCGAAT
1 AATTCGAAT
81321937 AATTCGAAT
1 AATTCGAAT
81321946 AATTCGAAT
1 AATTCGAAT
81321955 A
1 A
81321956 TCAAACTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.33
Consensus pattern (9 bp):
AATTCGAAT
Found at i:81322197 original size:19 final size:20
Alignment explanation
Indices: 81322157--81322197 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
81322147 CAAAAACCCT
*
81322157 CAAAACTTTTTATTTTCCCC
1 CAAAACTTTTTATCTTCCCC
81322177 CAAAA-TTTTTA-CTTCCTCC
1 CAAAACTTTTTATCTTCC-CC
81322196 CA
1 CA
81322198 CTTTCCCCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.21
19 10 0.53
20 5 0.26
ACGTcount: A:0.27, C:0.32, G:0.00, T:0.41
Consensus pattern (20 bp):
CAAAACTTTTTATCTTCCCC
Found at i:81324642 original size:43 final size:43
Alignment explanation
Indices: 81324584--81324736 Score: 153
Period size: 43 Copynumber: 3.4 Consensus size: 43
81324574 ATAGCAAATC
* *
81324584 TTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGAATTAATT
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGAATTAATT
* * ** *
81324627 TTATTTCCCTAAAGTTACAGTGGAATAGATTAAAGCTACAAGTTATAAATC
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG----AA--T-T-AATT
*
81324678 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATTAATT
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGAATTAATT
*
81324721 TTATTTCCCTAAAGTT
1 TTATCTCCCTAAAGTT
81324737 ATAGTGGAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 16
0.74 0.13 0.14
Matches are distributed among these distances:
43 46 0.53
44 1 0.01
45 1 0.01
47 4 0.05
49 1 0.01
50 1 0.01
51 33 0.38
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (43 bp):
TTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGAATTAATT
Found at i:81324687 original size:94 final size:94
Alignment explanation
Indices: 81324579--81324860 Score: 451
Period size: 94 Copynumber: 3.0 Consensus size: 94
81324569 TGAAGATAGC
*
81324579 AAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGAATTAATTTTATTTCCCTAAAGTTA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATTAATTTTATTTCCCTAAAGTTA
81324644 CAGTGGAATAGATTAAAGCTACAAGTTAT
66 CAGTGGAATAGATTAAAGCTACAAGTTAT
81324673 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATTAATTTTATTTCCCTAAAGTTA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATTAATTTTATTTCCCTAAAGTTA
* *
81324738 TAGTGGAATAGATTTAAGCTACAAGTTAT
66 CAGTGGAATAGATTAAAGCTACAAGTTAT
* * **
81324767 AAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATACCAAATTTTATTTCCCTGAAA-
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA-A-TTAATTTTATTTCCCT-AAAG
*
81324831 -TGCAGTGGAATAGATTAAAGCTACAAGTTA
63 TTACAGTGGAATAGATTAAAGCTACAAGTTA
81324861 CAAAGTGGAG
Statistics
Matches: 175, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
94 130 0.74
95 28 0.16
96 14 0.08
97 3 0.02
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (94 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATTAATTTTATTTCCCTAAAGTTA
CAGTGGAATAGATTAAAGCTACAAGTTAT
Found at i:81324708 original size:51 final size:51
Alignment explanation
Indices: 81324627--81324802 Score: 170
Period size: 51 Copynumber: 3.6 Consensus size: 51
81324617 AGAATTAATT
* *
81324627 TTATTTCCCTAAAGTTACAGTGGAATAGATTAAAGCTACAAGTTATAAATC
1 TTATCTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATAAATC
* * * *
81324678 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG----AA--T-T-AATT
1 TTATCTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATAAATC
* * * *
81324721 TTATTTCCCTAAAGTTATAGTGGAATAGATTTAAGCTACAAGTTATAAATC
1 TTATCTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATAAATC
* ** *
81324772 TTATCTCCCTGAAGTTGTAGTGGAGCAGATT
1 TTATCTCCCTAAAGTTACAGTGGAACAGATT
81324803 GAAGATACCA
Statistics
Matches: 98, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
43 31 0.32
44 1 0.01
45 1 0.01
47 4 0.04
49 1 0.01
50 1 0.01
51 59 0.60
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.35
Consensus pattern (51 bp):
TTATCTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATAAATC
Found at i:81324914 original size:74 final size:74
Alignment explanation
Indices: 81324790--81324934 Score: 177
Period size: 74 Copynumber: 2.0 Consensus size: 74
81324780 CTGAAGTTGT
* * * * * *
81324790 AGTGGAGCAGATTGAAGATACCAAATTTTATTTCCCTGAAATGCAGTGGAATAGATTAAAGCTAC
1 AGTGGAGCAGATTGAAGATACCAAATATTATTTCCCTGAAATACAATGGAACAAATTAAAACTAC
81324855 AAGTTACAA
66 AAGTTACAA
* * *
81324864 AGTGGAGCAGATTGAATATA-CGAATATTATTTCCCT-AAAGTTATAATGGAACAAATTAAAACT
1 AGTGGAGCAGATTGAAGATACCAAATATTATTTCCCTGAAA--TACAATGGAACAAATTAAAACT
81324927 ACAAGTTA
64 ACAAGTTA
81324935 TAAATCTTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
72 3 0.05
73 14 0.23
74 43 0.72
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.28
Consensus pattern (74 bp):
AGTGGAGCAGATTGAAGATACCAAATATTATTTCCCTGAAATACAATGGAACAAATTAAAACTAC
AAGTTACAA
Found at i:81324997 original size:44 final size:44
Alignment explanation
Indices: 81324929--81325808 Score: 341
Period size: 45 Copynumber: 19.1 Consensus size: 44
81324919 TTAAAACTAC
* * * ** * ** *
81324929 AAGTTATAAATCTTATCTCCCTGAAGTTATAGTGTAATAGATTG
1 AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* *
81324973 GAGTTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTA
1 AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* *
81325017 AAATTACAAATCTGATCTCTCTGAAGTTGCAGTAGAGCAGATTA
1 AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* *
81325061 AAATTACAAATCTGATCTCTCTGAAGTTACAGTGGAGCAGATTA
1 AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* * *
81325105 AACTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGTAGATTG
1 AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* * * *
81325149 AAGATACAAATCTTATCTC-CGTGAAGTTGTAATGGAGCAGATTGA
1 AAGTTACAAATCTGATCTCTC-TGAAGTTGCAGTGGAGCAGATT-A
* * * * ** * * *
81325194 AA-ATAGCAAATCTTATTTCCCCAAAGTTGTAGCGGAACAGATTA
1 AAGTTA-CAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* ** * * * * * *
81325238 AAGCTACAAATTACAAATTTTTTCTCCCTAAAGTTACAGCGAAGCAGAATGA
1 AAG-------TTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAG-ATTA
* * *
81325290 AACG--ATAAGTCCT-ATACT-TCTGAAGTTGCAGTAGGTTG--GATTA
1 AA-GTTACAAAT-CTGAT-CTCTCTGAAGTTGCAGT-GG-AGCAGATTA
* * * *
81325333 AA-TCTACCATAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTA
1 AAGT-TA-C---A-AA-TCTGATCTCTCTGAAGTTGCAGTGG---AG-C-AGA-TTA
* * * * *
81325389 CAAGCTACAAATGTTATCT-TCCTGAAGTTGCGGTGGAGCAGATTG
1 -AAGTTACAAATCTGATCTCT-CTGAAGTTGCAGTGGAGCAGATTA
* * *
81325434 AAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
1 AAG-TTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATT-A
* * * * * *
81325480 AA-ATAGTAAATCTTATCTCTCTGAAGTTGCAGTGAAGCATATTG
1 AAGTTA-CAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* * * * * *
81325524 AAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTA
1 AAGTTA-CAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGA-T-----TA
* *
81325575 CAAGTTACAATTCTTATCT-TCTTGAAGTTGCAGTGGAGCAGATTA
1 -AAGTTACAAATCTGATCTCTC-TGAAGTTGCAGTGGAGCAGATTA
* ** * * * * *
81325620 AAGATAGTGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTG
1 AAGTTA-CAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* * * *
81325665 AAGATA-ATGAATCTTAT-TCCTCTGAAGTTGTAGTGGAACAGATTAAAGCTA
1 AAGTTACA--AATCTGATCT-CTCTGAAGTTGCAGTGGAGCAGA-T-----TA
* * * *
81325716 CAAGTTACAAATCTTATCTCCCTGATA-TTGTAGTGGAGCAGATTG
1 -AAGTTACAAATCTGATCTCTCTGA-AGTTGCAGTGGAGCAGATTA
* * * * *
81325761 AAGATAACAAATCTTATTTCTCTGAAGTTGCAGTGAAACAGATTA
1 AAG-TTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
81325806 AAG
1 AAG
81325809 CTACGAGTTA
Statistics
Matches: 652, Mismatches: 115, Indels: 137
0.72 0.13 0.15
Matches are distributed among these distances:
43 6 0.01
44 231 0.35
45 237 0.36
46 10 0.02
47 1 0.00
48 3 0.00
49 7 0.01
50 19 0.03
51 106 0.16
52 21 0.03
53 3 0.00
55 1 0.00
56 3 0.00
57 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (44 bp):
AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
Found at i:81325085 original size:88 final size:89
Alignment explanation
Indices: 81324976--81325794 Score: 383
Period size: 96 Copynumber: 8.8 Consensus size: 89
81324966 TAGATTGGAG
81324976 TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATTACAAATCTGATCTCTCTGA
1 TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATTACAAATCTGATCTCTCTGA
81325041 AGTTGCAGTAGAGCAGATT-AAAA
66 AGTTGCAGTAGAGCAGATTGAAAA
* * *
81325064 TTACAAATCTGATCTCTCTGAAGTTACAGTGGAGCAGATTAAACTTACAAATCTGATCTCTCTGA
1 TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATTACAAATCTGATCTCTCTGA
* * *
81325129 AGTTGCAGTGGAGTAGATTGAAGA
66 AGTTGCAGTAGAGCAGATTGAAAA
* * * * *
81325153 -TACAAATCTTATCTC-CGTGAAGTTGTAATGGAGCAGATTGAAAA-TAGCAAATCTTATTTCCC
1 TTACAAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATT-AAAATTA-CAAATCTGATCTCTC
** * ** *
81325215 CAAAGTTGTAGCGGAACAGATTAAAGCTACAAA
63 TGAAGTTGCAGTAGAGCAGATT---G--A-AAA
* * * * * * * * * ** * *
81325248 TTACAAATTTTTTCTCCCTAAAGTTACAGCGAAGCAGAATGAAACGATAAGTCCT-ATACT-TCT
1 TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATTACAAAT-CTGAT-CTCTCT
** *
81325311 GAAGTTGCAGTAG-GTTGGATTAAATCTACCA
64 GAAGTTGCAGTAGAG-CAGATTGAA---A--A
* * * * * ** * *
81325342 TAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTACAAATGTTATC
1 TTACAAATCTTATCTCTCTGAAGTTGCAGTGG---AG-C-AGA-TTA-AAATTACAAATCTGATC
* * *
81325407 T-TCCTGAAGTTGCGGTGGAGCAGATTGAAGA
59 TCT-CTGAAGTTGCAGTAGAGCAGATTGAAAA
* * * *
81325438 TAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA-TAGTAAATCTTATCTCTCT
1 TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT-AAAATTA-CAAATCTGATCTCTCT
* *
81325502 GAAGTTGCAGT-GAAGCATATTGAAGA
64 GAAGTTGCAGTAG-AGCAGATTGAAAA
* * * * * *
81325528 -TAGCAAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTACAAGTTACAATTCTTAT
1 TTA-CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT--A---A-AA-TTACAAATCTGAT
*
81325592 CT-TCTTGAAGTTGCAGTGGAGCAGATT-AAAGA
58 CTCTC-TGAAGTTGCAGTAGAGCAGATTGAAA-A
** * * * * * ** *
81325624 -TAGTGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAGATAATGAATCTTAT-TCCTC
1 TTA-CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT-AAAATTACAAATCTGATCT-CTC
* * * *
81325687 TGAAGTTGTAGTGGAACAGATTAAAGCTACAAG
63 TGAAGTTGCAGTAGAGCAGATT---G--A-AAA
* * * * * *
81325720 TTACAAATCTTATCTCCCTGATA-TTGTAGTGGAGCAGATTGAAGATAACAAATCTTATTTCTCT
1 TTACAAATCTTATCTCTCTGA-AGTTGCAGTGGAGCAGATT-AAAATTACAAATCTGATCTCTCT
81325784 GAAGTTGCAGT
64 GAAGTTGCAGT
81325795 GAAACAGATT
Statistics
Matches: 565, Mismatches: 108, Indels: 108
0.72 0.14 0.14
Matches are distributed among these distances:
87 1 0.00
88 114 0.20
89 40 0.07
90 101 0.18
91 8 0.01
92 4 0.01
93 2 0.00
94 27 0.05
95 31 0.05
96 188 0.33
97 12 0.02
98 1 0.00
99 2 0.00
100 5 0.01
101 28 0.05
102 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (89 bp):
TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATTACAAATCTGATCTCTCTGA
AGTTGCAGTAGAGCAGATTGAAAA
Found at i:81325221 original size:45 final size:44
Alignment explanation
Indices: 81324977--81325224 Score: 151
Period size: 44 Copynumber: 5.6 Consensus size: 44
81324967 AGATTGGAGT
* ** * *
81324977 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT-AAAA
1 TACAAATCTTATCTCCCCAAAGTTGTAATGGAGCAGATTGAAAA
* * ** * * *
81325020 TTACAAATCTGATCTCTCTGAAGTTGCAGTAGAGCAGATT-AAAA
1 -TACAAATCTTATCTCCCCAAAGTTGTAATGGAGCAGATTGAAAA
* * ** ** * *
81325064 TTACAAATCTGATCTCTCTGAAGTTACAGTGGAGCAGATT-AAACT
1 -TACAAATCTTATCTCCCCAAAGTTGTAATGGAGCAGATTGAAA-A
* * ** * * * *
81325109 TACAAATCTGATCTCTCTGAAGTTGCAGTGGAGTAGATTGAAGA
1 TACAAATCTTATCTCCCCAAAGTTGTAATGGAGCAGATTGAAAA
***
81325153 TACAAATCTTATCTCCGTGAAGTTGTAATGGAGCAGATTGAAAA
1 TACAAATCTTATCTCCCCAAAGTTGTAATGGAGCAGATTGAAAA
*
81325197 TAGCAAATCTTATTTCCCCAAAGTTGTA
1 TA-CAAATCTTATCTCCCCAAAGTTGTA
81325225 GCGGAACAGA
Statistics
Matches: 181, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
44 158 0.87
45 23 0.13
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (44 bp):
TACAAATCTTATCTCCCCAAAGTTGTAATGGAGCAGATTGAAAA
Found at i:81325459 original size:45 final size:45
Alignment explanation
Indices: 81325341--81325804 Score: 347
Period size: 45 Copynumber: 9.9 Consensus size: 45
81325331 TAAATCTACC
* ** * *
81325341 ATAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAG
1 ATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * *
81325386 CTACAAGCTACAAATGTTATCTTCCTGAAGTTGCGGTGGAGCAGATTGAAG
1 --A-TA---ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
*
81325437 ATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA
1 ATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
** * * *
81325482 ATAGTAAATCTTATCTCTCTGAAGTTGCAGTGAAGCATATTGAAG
1 ATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * *
81325527 ATAGCAAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAG
1 ATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * *
81325572 CTACAAGTTACAATTCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTAAAG
1 -----A-TAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
*** * ** *
81325623 ATAGTGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAG
1 ATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
** * * *
81325668 ATAATGAATCTTAT-TCCTCTGAAGTTGTAGTGGAACAGATTAAAG
1 ATAACAAATCTTATCTCC-CTGAAGTTGCAGTGGAGCAGATTGAAG
* *
81325713 CTACAAGTTACAAATCTTATCTCCCTGATA-TTGTAGTGGAGCAGATTGAAG
1 -----A-TAACAAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTGAAG
* * * *
81325764 ATAACAAATCTTATTTCTCTGAAGTTGCAGTGAAACAGATT
1 ATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
81325805 AAAGCTACGA
Statistics
Matches: 335, Mismatches: 62, Indels: 42
0.76 0.14 0.10
Matches are distributed among these distances:
44 2 0.01
45 218 0.65
46 2 0.01
47 1 0.00
48 2 0.01
49 1 0.00
50 2 0.01
51 103 0.31
52 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (45 bp):
ATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
Found at i:81325603 original size:141 final size:140
Alignment explanation
Indices: 81325440--81325804 Score: 511
Period size: 141 Copynumber: 2.6 Consensus size: 140
81325430 ATTGAAGATA
*
81325440 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAGTAAATCTTATCTCTCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAGTAAATCTTATTTCTCTGAA
* *
81325505 GTTGCAGTGAAGCATATTGAAGATAGCAAATCTTATTTCC-CTGAAGTTGCAGTAGAACAGATTA
66 GTTGCAGTGAA-CAGATTGAAGATAACAAATCTTA-TTCCTCTGAAGTTGCAGTAGAACAGATTA
81325569 AAGCTACAAGTT
129 AAGCTACAAGTT
* * * * *
81325581 ACAATTCTTATCTTCTTGAAGTTGCAGTGGAGCAGATT-AAAGATAGTGAATCTTATTTTTCTGA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-ATAGTAAATCTTATTTCTCTGA
** * *
81325645 AGTTGCAGTGGAACAGATTGAAGATAATGAATCTTATTCCTCTGAAGTTGTAGTGGAACAGATTA
65 AGTTGCAGT-GAACAGATTGAAGATAACAAATCTTATTCCTCTGAAGTTGCAGTAGAACAGATTA
81325710 AAGCTACAAGTT
129 AAGCTACAAGTT
* * **
81325722 ACAAATCTTATCTCCCTGATA-TTGTAGTGGAGCAGATTGAAGATAACAAATCTTATTTCTCTGA
1 ACAAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTGAAAATAGTAAATCTTATTTCTCTGA
81325786 AGTTGCAGTGAAACAGATT
65 AGTTGCAGTG-AACAGATT
81325805 AAAGCTACGA
Statistics
Matches: 197, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
140 8 0.04
141 183 0.93
142 6 0.03
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32
Consensus pattern (140 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAGTAAATCTTATTTCTCTGAA
GTTGCAGTGAACAGATTGAAGATAACAAATCTTATTCCTCTGAAGTTGCAGTAGAACAGATTAAA
GCTACAAGTT
Found at i:81325680 original size:186 final size:186
Alignment explanation
Indices: 81325349--81325699 Score: 497
Period size: 186 Copynumber: 1.9 Consensus size: 186
81325339 CCATAACAAG
* * *
81325349 TCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTACAAATGTTATCTTCCTGA
1 TCTTATCTCCCTGAAGTTGCAGTAGAACAGACTAAAGCTACAAGCTACAAATCTTATCTTCCTGA
* * *
81325414 AGTTGCGGTGGAGCAGATTGAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
66 AGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTG
*
81325479 AAAATAGTAAATCTTA-TCTCTCTGAAGTTGCAGTGAAGCATATTGAAGATAGCAAA
131 AAAATAATAAATCTTATTC-CTCTGAAGTTGCAGTGAAGCATATTGAAGATAGCAAA
* * * * *
81325535 TCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTACAAGTTACAATTCTTATCTTCTTGA
1 TCTTATCTCCCTGAAGTTGCAGTAGAACAGACTAAAGCTACAAGCTACAAATCTTATCTTCCTGA
*** * **
81325600 AGTTGCAGTGGAGCAGATTAAAGATAGTGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTG
66 AGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTG
* * *
81325665 AAGATAATGAATCTTATTCCTCTGAAGTTGTAGTG
131 AAAATAATAAATCTTATTCCTCTGAAGTTGCAGTG
81325700 GAACAGATTA
Statistics
Matches: 143, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
186 141 0.99
187 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (186 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAACAGACTAAAGCTACAAGCTACAAATCTTATCTTCCTGA
AGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTG
AAAATAATAAATCTTATTCCTCTGAAGTTGCAGTGAAGCATATTGAAGATAGCAAA
Found at i:81325729 original size:96 final size:94
Alignment explanation
Indices: 81325629--81325891 Score: 296
Period size: 96 Copynumber: 2.7 Consensus size: 94
81325619 AAAGATAGTG
*
81325629 AATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAGATAATGAATCTTATTCCTCTGAAGTT
1 AATCTTATTTTTCTGAAGTTGCAGTGGAGCAGATTGAAGATAA--AATCTTATTCCTCTGAAGTT
81325694 GTAGTGGAACAGATTAAAGCTACAAGTTACA
64 GTAGTGGAACAGATTAAAGCTACAAGTTACA
* ** * *
81325725 AATCTTATCTCCCTGATA-TTGTAGTGGAGCAGATTGAAGATAACAAATCTTATTTCTCTGAAGT
1 AATCTTATTTTTCTGA-AGTTGCAGTGGAGCAGATTGAAGAT-A-AAATCTTATTCCTCTGAAGT
* * *
81325789 TGCAGTGAAACAGATTAAAGCTACGAGTTACA
63 TGTAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * * * * *
81325821 AATCTTA-TCTTCTTGAAGTTACAGTAGAGTAGATTAAAGAGACAAATCTTATACCTCTAAAGTT
1 AATCTTATTTTTC-TGAAGTTGCAGTGGAGCAGATTGAAGATA-AAATCTTATTCCTCTGAAGTT
81325885 GTAGTGG
64 GTAGTGG
81325892 GTCGGATTAG
Statistics
Matches: 138, Mismatches: 24, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
95 27 0.20
96 108 0.78
97 2 0.01
98 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (94 bp):
AATCTTATTTTTCTGAAGTTGCAGTGGAGCAGATTGAAGATAAAATCTTATTCCTCTGAAGTTGT
AGTGGAACAGATTAAAGCTACAAGTTACA
Found at i:81327546 original size:22 final size:24
Alignment explanation
Indices: 81327501--81327546 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
81327491 TTATAGATCT
* *
81327501 TATATATATTATTTTATTTATTTA
1 TATATATATTATATTATCTATTTA
81327525 TATATATATT-TATTATCT-TTTA
1 TATATATATTATATTATCTATTTA
81327547 CCCTTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 6 0.30
24 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (24 bp):
TATATATATTATATTATCTATTTA
Found at i:81327811 original size:14 final size:15
Alignment explanation
Indices: 81327782--81327825 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
81327772 TTTTTACTAC
*
81327782 ATTTTTATTTCTTTT
1 ATTTTTATTACTTTT
81327797 ATTTTTATTACTTTAT
1 ATTTTTATTACTTT-T
*
81327813 GTATTTTATTACT
1 AT-TTTTATTACT
81327826 AATGCCATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 13 0.52
16 2 0.08
17 10 0.40
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (15 bp):
ATTTTTATTACTTTT
Found at i:81329355 original size:33 final size:35
Alignment explanation
Indices: 81329318--81329413 Score: 87
Period size: 33 Copynumber: 2.8 Consensus size: 35
81329308 ATAGTTATAT
81329318 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTACTTAA
* *
81329351 TTAAAT-TTTATAA-ATAATTAATATTTATTACTTAA
1 TTAAATATTTAAAATATAATT--TATATATTACTTAA
*
81329386 --AAATATTTAAAATTTATATTTCATATAT
1 TTAAATATTTAAAATATA-ATTT-ATATAT
81329414 CAAAATATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.34
34 8 0.16
35 10 0.20
36 3 0.06
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTACTTAA
Found at i:81330679 original size:5 final size:5
Alignment explanation
Indices: 81330669--81330712 Score: 70
Period size: 5 Copynumber: 8.4 Consensus size: 5
81330659 TTATGTTTTA
81330669 ATTAT ATTAT ATTAT ATTAT ATATAT ATTAT ATTAT ATATAT AT
1 ATTAT ATTAT ATTAT ATTAT AT-TAT ATTAT ATTAT AT-TAT AT
81330713 ATAAACTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
5 27 0.73
6 10 0.27
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
ATTAT
Found at i:81330683 original size:21 final size:21
Alignment explanation
Indices: 81330671--81330715 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
81330661 ATGTTTTAAT
81330671 TATATTATATTATATTATATA
1 TATATTATATTATATTATATA
81330692 TATATTATATTATA-TATATA
1 TATATTATATTATATTATATA
81330712 TATA
1 TATA
81330716 AACTAAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TATATTATATTATATTATATA
Found at i:81330693 original size:2 final size:2
Alignment explanation
Indices: 81330671--81330715 Score: 55
Period size: 2 Copynumber: 25.0 Consensus size: 2
81330661 ATGTTTTAAT
81330671 TA TA T- TA TA T- TA TA T- TA TA TA TA TA T- TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81330708 TA TA TA TA
1 TA TA TA TA
81330716 AACTAAAGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
1 5 0.13
2 33 0.87
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:81330695 original size:16 final size:16
Alignment explanation
Indices: 81330669--81330712 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
81330659 TTATGTTTTA
81330669 ATTATAT-TATATTAT
1 ATTATATATATATTAT
81330684 ATTATATATATATTAT
1 ATTATATATATATTAT
81330700 ATTATATATATAT
1 ATTATATATATAT
81330713 ATAAACTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 7 0.25
16 21 0.75
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTATATATATATTAT
Found at i:81332005 original size:15 final size:15
Alignment explanation
Indices: 81331985--81332041 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
81331975 CGATGAATTT
81331985 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
81332000 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
81332015 ATTGAATTTATATTG
1 ATTGAATTTATATTG
81332030 ATTGAA-TTATAT
1 ATTGAATTTATAT
81332042 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:81332437 original size:21 final size:21
Alignment explanation
Indices: 81332411--81332496 Score: 100
Period size: 21 Copynumber: 4.1 Consensus size: 21
81332401 GGCTTTATCG
* *
81332411 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
81332432 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
81332453 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
* * * *
81332474 TTTAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
81332495 AT
1 AT
81332497 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (21 bp):
ATCAGGCACCTCATGTGTCGT
Found at i:81337105 original size:5 final size:5
Alignment explanation
Indices: 81337095--81337142 Score: 71
Period size: 5 Copynumber: 9.4 Consensus size: 5
81337085 TTATGTTTTA
81337095 ATTAT ATTAT ATTAT ATTAT ATTAT ATTATAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT A-T-TAT ATTAT ATTAT ATTAT AT
81337143 AAACTAAAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.10
5 30 0.75
6 2 0.05
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:81337129 original size:12 final size:12
Alignment explanation
Indices: 81337102--81337140 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
81337092 TTAATTATAT
81337102 TATATTATA-T-
1 TATATTATATTA
81337112 TATATTATATTA
1 TATATTATATTA
81337124 TATATTATATTA
1 TATATTATATTA
81337136 TATAT
1 TATAT
81337141 ATAAACTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 9 0.33
11 1 0.04
12 17 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATATTATATTA
Found at i:81338438 original size:15 final size:15
Alignment explanation
Indices: 81338418--81338474 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
81338408 CGATGAATTT
81338418 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
81338433 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
81338448 ATTGAATTTATATTG
1 ATTGAATTTATATTG
81338463 ATTGAA-TTATAT
1 ATTGAATTTATAT
81338475 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:81338890 original size:21 final size:21
Alignment explanation
Indices: 81338866--81338939 Score: 130
Period size: 21 Copynumber: 3.5 Consensus size: 21
81338856 TATGTGTTGT
81338866 GTATCAGGCACCTCGTGTGTC
1 GTATCAGGCACCTCGTGTGTC
81338887 GTATCAGGCACCTCGTGTGTC
1 GTATCAGGCACCTCGTGTGTC
81338908 GTATCAGGCACCTCGTGTGTC
1 GTATCAGGCACCTCGTGTGTC
* *
81338929 GTTTTAGGCAC
1 GTATCAGGCAC
81338940 TTTATGTGTC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.15, C:0.27, G:0.28, T:0.30
Consensus pattern (21 bp):
GTATCAGGCACCTCGTGTGTC
Found at i:81338948 original size:42 final size:42
Alignment explanation
Indices: 81338845--81338950 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 42
81338835 GGCTTTATCG
*
81338845 ATCAGGCACTTTATGTGTTGTGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTG-T-CGTATCAGGCACCTCGTGTGTCGT
* **
81338889 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
* *
81338931 TTTAGGCACTTTATGTGTCG
1 ATCAGGCACTTTATGTGTCG
81338951 CATACTGATC
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 38 0.72
43 1 0.02
44 14 0.26
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (42 bp):
ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:81341759 original size:27 final size:27
Alignment explanation
Indices: 81341721--81341772 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
81341711 ATTAGTTCTC
81341721 TTAAAACTATTT-TATGTA-TCATTTAT
1 TTAAAACTATTTATA-GTATTCATTTAT
*
81341747 TTAAAATTGATTTATAGTATTCATTT
1 TTAAAACT-ATTTATAGTATTCATTT
81341773 CAAATTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 7 0.32
27 7 0.32
28 8 0.36
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.54
Consensus pattern (27 bp):
TTAAAACTATTTATAGTATTCATTTAT
Found at i:81341777 original size:24 final size:24
Alignment explanation
Indices: 81341745--81341790 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
81341735 TGTATCATTT
81341745 ATTTAAAATTGATTTATAGTATTC
1 ATTTAAAATTGATTTATAGTATTC
* * *
81341769 ATTTCAAATTGTTTTATTGTAT
1 ATTTAAAATTGATTTATAGTAT
81341791 ATTATTTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (24 bp):
ATTTAAAATTGATTTATAGTATTC
Found at i:81341928 original size:28 final size:28
Alignment explanation
Indices: 81341869--81341929 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
81341859 TAAATTATTT
** * **
81341869 TATATATTACTTATTTTACGTTTTTATG
1 TATATATTACTTATTTTAAATTCTTACA
*
81341897 TATATATTATTTATTTTAAATTCTTACA
1 TATATATTACTTATTTTAAATTCTTACA
81341925 TATAT
1 TATAT
81341930 TAGACTTTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.59
Consensus pattern (28 bp):
TATATATTACTTATTTTAAATTCTTACA
Found at i:81341962 original size:24 final size:23
Alignment explanation
Indices: 81341911--81341964 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
81341901 TATTATTTAT
81341911 TTTAAATTCTTACATATATTAGA
1 TTTAAATTCTTACATATATTAGA
81341934 CTTTAAATT-TTCACATATCATGTAG-
1 -TTTAAATTCTT-ACATAT-AT-TAGA
81341959 TTTAAA
1 TTTAAA
81341965 CCATTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
23 2 0.07
24 20 0.74
25 2 0.07
26 3 0.11
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46
Consensus pattern (23 bp):
TTTAAATTCTTACATATATTAGA
Found at i:81354293 original size:44 final size:44
Alignment explanation
Indices: 81354229--81354571 Score: 182
Period size: 44 Copynumber: 7.8 Consensus size: 44
81354219 CATGGCGAAT
* * *
81354229 CTTATCTTCCTGAAGTTGCAGCGAAGTAGATTGAAGCCACTAAC
1 CTTATCTCCCTGAAGATGCAGTGAAGTAGATTGAAGCCACTAAC
* * ** *
81354273 CTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGTTAC-AAGT
1 CTTATCTCCCTGAAGATGCAGTGAAGTAGATTGAAGCCACTAA-C
* * * *
81354317 CTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCACTAAC
1 CTTATCTCCCTGAAGATGCAGTGAAGTAGATTGAAGCCACTAAC
* * * * ** *
81354361 CTTATCTCCCTGAAGATACGGTGGAGTAGGTTGAAGTTAC-AAGT
1 CTTATCTCCCTGAAGATGCAGTGAAGTAGATTGAAGCCACTAA-C
* * * ** * **
81354405 CTCATCTCCCTGAAGTTGCAGTGGAGCGGGTTGAAGATAGC-AAGC
1 CTTATCTCCCTGAAGATGCAGTGAAGTAGATTGAAGCCA-CTAA-C
* * * * *
81354450 CTTATTTCCCTGAAG-TCACAGTGGAA-TAGATT-AA-TCACAAAT
1 CTTATCTCCCTGAAGAT-GCAGT-GAAGTAGATTGAAGCCACTAAC
* * * * *
81354492 CTTATCTCTCTGAAGTTGCAGT-AGAGTGGATTAAAGCTA-TAAAC
1 CTTATCTCCCTGAAGATGCAGTGA-AGTAGATTGAAGCCACT-AAC
* * * *
81354536 CTTATCTCTCTGAAGTTGCAGTGGAGTACATTGAAG
1 CTTATCTCCCTGAAGATGCAGTGAAGTAGATTGAAG
81354572 ATACTTGAAG
Statistics
Matches: 227, Mismatches: 58, Indels: 28
0.73 0.19 0.09
Matches are distributed among these distances:
40 1 0.00
41 1 0.00
42 23 0.10
43 10 0.04
44 164 0.72
45 26 0.11
46 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGATGCAGTGAAGTAGATTGAAGCCACTAAC
Found at i:81354350 original size:88 final size:88
Alignment explanation
Indices: 81354228--81354513 Score: 339
Period size: 88 Copynumber: 3.3 Consensus size: 88
81354218 CCATGGCGAA
* * * *
81354228 TCTTATCTTCCTGAAGTTGCAGCGAAGTAGATTGAAGCCACTAACCTTATCTCCCTGAAGATGCA
1 TCTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCACTAACCTTATCTCCCTGAAGATACA
81354293 GTGGAGTAGGTTGAAGTTACAAG
66 GTGGAGTAGGTTGAAGTTACAAG
*
81354316 TCTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCACTAACCTTATCTCCCTGAAGATACG
1 TCTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCACTAACCTTATCTCCCTGAAGATACA
81354381 GTGGAGTAGGTTGAAGTTACAAG
66 GTGGAGTAGGTTGAAGTTACAAG
* * * *** ** *
81354404 TCTCATCTCCCTGAAGTTGCAGTGGAGCGGGTTGAAGATAGC-AAGCCTTATTTCCCTGAAG-TC
1 TCTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCA-CTAA-CCTTATCTCCCTGAAGAT-
* * * *
81354467 ACAGTGGAATAGATT-AA-TCACAAA
63 ACAGTGGAGTAGGTTGAAGTTACAAG
81354491 TCTTATC-TCTCTGAAGTTGCAGT
1 TCTTATCTTC-CTGAAGTTGCAGT
81354514 AGAGTGGATT
Statistics
Matches: 173, Mismatches: 21, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
86 1 0.01
87 24 0.14
88 120 0.69
89 28 0.16
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (88 bp):
TCTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCACTAACCTTATCTCCCTGAAGATACA
GTGGAGTAGGTTGAAGTTACAAG
Found at i:81356759 original size:27 final size:27
Alignment explanation
Indices: 81356721--81356772 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
81356711 ATTAGTTCTC
81356721 TTAAAACTATTT-TATGTA-TCATTTAT
1 TTAAAACTATTTATA-GTATTCATTTAT
*
81356747 TTAAAATTGATTTATAGTATTCATTT
1 TTAAAACT-ATTTATAGTATTCATTT
81356773 CAAATTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 7 0.32
27 7 0.32
28 8 0.36
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.54
Consensus pattern (27 bp):
TTAAAACTATTTATAGTATTCATTTAT
Found at i:81356777 original size:24 final size:24
Alignment explanation
Indices: 81356745--81356790 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
81356735 TGTATCATTT
81356745 ATTTAAAATTGATTTATAGTATTC
1 ATTTAAAATTGATTTATAGTATTC
* * *
81356769 ATTTCAAATTGTTTTATTGTAT
1 ATTTAAAATTGATTTATAGTAT
81356791 ATTATTTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (24 bp):
ATTTAAAATTGATTTATAGTATTC
Found at i:81356938 original size:24 final size:24
Alignment explanation
Indices: 81356911--81356964 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
81356901 TATTATTTAT
81356911 TTTAAATTCTT-ACATATCATAGAC
1 TTTAAATT-TTCACATATCATAGAC
* *
81356935 TTTAAATTTTCACATATCATATAG
1 TTTAAATTTTCACATATCATAGAC
81356959 TTTAAA
1 TTTAAA
81356965 CCATTTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.44
Consensus pattern (24 bp):
TTTAAATTTTCACATATCATAGAC
Found at i:81362273 original size:45 final size:45
Alignment explanation
Indices: 81362223--81362313 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
81362213 ATAATCTAGA
* * * *
81362223 GGGTTTATTTGTTTGATCTGATCCAGTCTAATCTTTAAGGATAGG
1 GGGTTTAATTGTTTGACCTGATCCAATCCAATCTTTAAGGATAGG
81362268 GGGTTTAATTGTTTGACCTGATCCAATCCAATCTTTAAGGATAGG
1 GGGTTTAATTGTTTGACCTGATCCAATCCAATCTTTAAGGATAGG
81362313 G
1 G
81362314 ATTGTCAACT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (45 bp):
GGGTTTAATTGTTTGACCTGATCCAATCCAATCTTTAAGGATAGG
Found at i:81362502 original size:15 final size:15
Alignment explanation
Indices: 81362471--81362537 Score: 64
Period size: 14 Copynumber: 4.2 Consensus size: 15
81362461 TAAAAAATTA
*
81362471 TTTATATAATATTTT
1 TTTATAAAATATTTT
*
81362486 TTT-GAAAATATTTT
1 TTTATAAAATATTTT
81362500 TTTATAAAATCATTTT
1 TTTATAAAAT-ATTTT
81362516 TTAAATATAAAATATTTAT
1 TT---TATAAAATATTT-T
81362535 TTT
1 TTT
81362538 TACACCATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
14 12 0.28
15 8 0.19
16 8 0.19
18 4 0.09
19 11 0.26
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (15 bp):
TTTATAAAATATTTT
Found at i:81364548 original size:25 final size:23
Alignment explanation
Indices: 81364496--81364550 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
81364486 TATAAATAGT
81364496 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
81364519 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
81364544 AATAGTG
1 AATAGTG
81364551 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:81365662 original size:27 final size:26
Alignment explanation
Indices: 81365614--81365826 Score: 214
Period size: 27 Copynumber: 7.9 Consensus size: 26
81365604 GCGAGGCTGC
* *
81365614 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
81365640 ACAGATATTGTGGCAGAGCCACCAGAAT
1 -CAGATATTGTGGCAGAGCCACCAG-AT
81365668 -AGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
** **
81365694 CAGATAATTGTGGCTTAGCCACCAGGG
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
*
81365721 CAGATATATGTAGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* **
81365748 CAGATAATTGTGGCATAGCCACCAGGG
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
*
81365775 CAGATATATGTAGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* *
81365802 CAGATAATTGTGGCATAGACACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
81365827 GACGCTTCCT
Statistics
Matches: 155, Mismatches: 22, Indels: 18
0.79 0.11 0.09
Matches are distributed among these distances:
26 12 0.08
27 134 0.86
28 9 0.06
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:81365704 original size:54 final size:54
Alignment explanation
Indices: 81365632--81365827 Score: 313
Period size: 54 Copynumber: 3.6 Consensus size: 54
81365622 GTGACGAAGT
* *** *
81365632 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGGCAGATATATGTAGCAGAGC
*
81365686 CACCAGATCAGATAATTGTGGCTTAGCCACCAGGGCAGATATATGTAGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGGCAGATATATGTAGCAGAGC
81365740 CACCAGATCAGATAATTGTGGCATAGCCACCAGGGCAGATATATGTAGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGGCAGATATATGTAGCAGAGC
*
81365794 CACCAGATCAGATAATTGTGGCATAGACACCAGG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGG
81365828 ACGCTTCCTC
Statistics
Matches: 133, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
53 5 0.04
54 128 0.96
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGGCAGATATATGTAGCAGAGC
Found at i:81367453 original size:26 final size:26
Alignment explanation
Indices: 81367422--81367529 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
81367412 TGAAATGCCC
*
81367422 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
81367448 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
81367474 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
81367500 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81367526 ATCA
1 ATCA
81367530 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81368231 original size:19 final size:19
Alignment explanation
Indices: 81368207--81368243 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
81368197 TATAAATAAT
*
81368207 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
81368226 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
81368244 TATAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:81368396 original size:31 final size:30
Alignment explanation
Indices: 81368323--81368400 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 30
81368313 AATATTGAAA
81368323 ACATATATACATAATATATACGAAAATATAT
1 ACATA-ATACATAATATATACGAAAATATAT
* ** *
81368354 AGAT-ATACATAATATAATATTAAAATATTT
1 ACATAATACATAATAT-ATACGAAAATATAT
81368384 ACATAATACATAA-ATAT
1 ACATAATACATAATATAT
81368401 TAGGGATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
29 13 0.32
30 16 0.40
31 11 0.28
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.35
Consensus pattern (30 bp):
ACATAATACATAATATATACGAAAATATAT
Found at i:81368464 original size:23 final size:22
Alignment explanation
Indices: 81368438--81368499 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 22
81368428 CTACATAAGT
*
81368438 ATATACATAAATATATTAAAAA
1 ATATACATAAATATAATAAAAA
*
81368460 CATATACATATATATAATAAAAA
1 -ATATACATAAATATAATAAAAA
81368483 ATATACACTAATATATA
1 ATATACA-TAA-ATATA
81368500 GTAATCATGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 7 0.21
23 22 0.65
24 5 0.15
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (22 bp):
ATATACATAAATATAATAAAAA
Found at i:81370414 original size:13 final size:13
Alignment explanation
Indices: 81370386--81370420 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
81370376 TGAGTTGATT
81370386 TTTGAAAACAGAA
1 TTTGAAAACAGAA
*
81370399 TTTGCAAAACAGAT
1 TTTG-AAAACAGAA
81370413 TTTGAAAA
1 TTTGAAAA
81370421 TACCTCGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (13 bp):
TTTGAAAACAGAA
Found at i:81370473 original size:89 final size:89
Alignment explanation
Indices: 81370352--81370566 Score: 297
Period size: 89 Copynumber: 2.4 Consensus size: 89
81370342 ACGTGAGCAA
* * * **
81370352 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAACAGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATT
*
81370416 GAAAATACCTCGGCATGTGATCCTG
66 GAAAATACCTCGACATGTGA-CCTG
* * * * *
81370441 AGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAAACATAAATTGAAAAACGGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATT
*
81370506 GTAAATACCTCGACATGTGACCTG
66 GAAAATACCTCGACATGTGACCTG
*
81370530 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
81370567 TTGATGAACA
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
89 71 0.65
90 38 0.35
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (89 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATT
GAAAATACCTCGACATGTGACCTG
Found at i:81370687 original size:74 final size:73
Alignment explanation
Indices: 81370508--81370879 Score: 279
Period size: 74 Copynumber: 4.9 Consensus size: 73
81370498 CGGAAATTGT
* * * *
81370508 AAATACCTCGACATGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATG
1 AAATACCTC-A-ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-A
* * *
81370573 AACAGAAATTA
63 AAAATAGATTA
* * *
81370584 AAACTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
1 AAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
81370649 AATAGATTGA
65 AATAGATT-A
* *
81370659 AAATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
1 AAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
*
81370724 CATAAATTGA
66 -ATAGATT-A
** * ** * * * *
81370734 ACAGA-AATTGAAAAT-ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 A-A-ATACCTCAACGTGTCCT-GA-G-G-C-TCA-ACTC-AC-C---TCTCGCAATATGAGTTGA
*
81370797 --GTTTTGAAACAAA-A-ATTA
53 TTTTTTTGAAA-AAATAGATTA
* *
81370815 ACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
1 A-AATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
81370880 GCATAAATTA
Statistics
Matches: 238, Mismatches: 37, Indels: 46
0.74 0.12 0.14
Matches are distributed among these distances:
71 18 0.08
72 1 0.00
73 8 0.03
74 65 0.27
75 64 0.27
76 14 0.06
77 10 0.04
78 2 0.01
79 2 0.01
80 4 0.02
81 12 0.05
82 7 0.03
83 2 0.01
84 9 0.04
85 2 0.01
86 18 0.08
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (73 bp):
AAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
ATAGATTA
Found at i:81370824 original size:71 final size:71
Alignment explanation
Indices: 81370733--81370872 Score: 201
Period size: 71 Copynumber: 2.0 Consensus size: 71
81370723 ACATAAATTG
* ** **
81370733 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAG
1 AACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAG
81370798 TTTTGA
66 TTTTGA
*
81370804 AACAAAAATT-AACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAAAAATTGAA-AATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
81370868 TTTTT
65 GTTTT
81370873 TTGAAAAGCA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
70 2 0.03
71 59 0.97
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (71 bp):
AACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAG
TTTTGA
Found at i:81370866 original size:157 final size:158
Alignment explanation
Indices: 81370571--81371696 Score: 934
Period size: 160 Copynumber: 6.9 Consensus size: 158
81370561 ATTTTTTTGA
* *
81370571 TGAACAGAAATT-AAAACTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTT
1 TGAACAGAAATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * *
81370635 GATTTTTTTTAAA-AAATAGATTGAA-AATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCG
65 GA--TTTTTGAAACAAA-A-ATTAAACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
81370698 CAATATGAGTTGATTTTTTTGAAAAACATAAAT
126 CAATATGAGTTGATTTTTTTGAAAAACATAAAT
* **
81370731 TGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 TGAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
81370796 AGTTTTGAAACAAAAATT-AACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
66 ATTTTTGAAACAAAAATTAAACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
*
81370860 TGAGTTGATTTTTTTGAAAAGCATAAAT
131 TGAGTTGATTTTTTTGAAAAACATAAAT
* ** * * * *
81370888 TAAAAAACATTAATTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAGCAATAT
1 T---GAACAGAAATTGAAAATACCTC--AACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
81370953 GAATTGATTTTTGAAAAACATAAATTGAAAAACGGAAATTGTAAATACCTC-GACATGTGACCTG
60 GAGTTGATTTTTG--AAACAAAAATT---AAAC----------AATACCTCAG-C--GTGTCCTG
*
81371017 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG----------A-
107 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAAT
* *
81371058 TGAACAGAAATT-AAAACTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTT
1 TGAACAGAAATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * *
81371122 GATTTTTTTTAAA-AAATAGATTGAA-AATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCG
65 GA--TTTTTGAAACAAA-A-ATTAAACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
81371185 CAATATGAGTTGATTTTTTTGAAAAACATAAAT
126 CAATATGAGTTGATTTTTTTGAAAAACATAAAT
* **
81371218 TGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 TGAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
81371283 AGTTTTGAAACAAAAATT-AACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
66 ATTTTTGAAACAAAAATTAAACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
*
81371347 TGAGTTGATTTTTTTGAAAAGCATAAAT
131 TGAGTTGATTTTTTTGAAAAACATAAAT
* ** * * * *
81371375 TAAAAAACATTAATTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAGCAATAT
1 T---GAACAGAAATTGAAAATACCTC--AACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
81371440 GAATTGATTTTTGAAAAACATAAATTGAAAAAACAGAAATTGTAAATACCTCAACATGTGACCTG
60 GAGTTGATTTTTG--AAACAAAAATT----AAAC----------AATACCTCAGC--GTGTCCTG
* * *
81371505 AGGTTCAATTCACTTCTCGCAATATGAGTTGATTTTTTTG----------A-
107 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAAT
* *
81371546 TGAACAGAAATT-AAAACTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTT
1 TGAACAGAAATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
81371610 GATTTTTTTGAAA-AAATATATTGAA-AATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
65 GA--TTTTTGAAACAAA-A-ATTAAACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
*
81371673 CAATGTGAGTTGATTTTTTTGAAA
126 CAATATGAGTTGATTTTTTTGAAA
81371697 CAGAAATAAA
Statistics
Matches: 790, Mismatches: 95, Indels: 170
0.75 0.09 0.16
Matches are distributed among these distances:
149 87 0.11
151 19 0.02
156 4 0.01
157 140 0.18
158 16 0.02
159 7 0.01
160 150 0.19
161 8 0.01
162 12 0.02
163 74 0.09
164 39 0.05
165 63 0.08
166 15 0.02
167 24 0.03
168 14 0.02
169 3 0.00
170 4 0.01
171 2 0.00
172 1 0.00
178 1 0.00
179 9 0.01
180 10 0.01
181 45 0.06
182 43 0.05
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (158 bp):
TGAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAACAAAAATTAAACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTGAAAAACATAAAT
Found at i:81371054 original size:90 final size:91
Alignment explanation
Indices: 81370835--81371073 Score: 320
Period size: 90 Copynumber: 2.6 Consensus size: 91
81370825 AGCGTGTCCC
* **
81370835 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTAAAAAACATTA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATAAATTAAAAAACAGAA
*
81370900 ATTGAAAATACCTCGGCATGTGATCCT
65 ATTGAAAATACCTCGACATGTGATCCT
* * * * *
81370927 GAGGCTCAATTCACCTCTAGCAATATGAATTGA-TTTTTGAAAAACATAAATTGAAAAACGGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTAAAAAACAGAAA
*
81370991 TTGTAAATACCTCGACATGTGA-CCT
66 TTGAAAATACCTCGACATGTGATCCT
* ** *
81371016 GAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATAAATTAAAA
81371074 CTACCTCAGC
Statistics
Matches: 127, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
89 32 0.25
90 46 0.36
91 19 0.15
92 30 0.24
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (91 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTAAAAAACAGAAA
TTGAAAATACCTCGACATGTGATCCT
Found at i:81371174 original size:74 final size:73
Alignment explanation
Indices: 81370995--81371366 Score: 279
Period size: 74 Copynumber: 4.9 Consensus size: 73
81370985 CGGAAATTGT
* * * *
81370995 AAATACCTCGACATGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATG
1 AAATACCTC-A-ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-A
* * *
81371060 AACAGAAATTA
63 AAAATAGATTA
* * *
81371071 AAACTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
1 AAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
81371136 AATAGATTGA
65 AATAGATT-A
* *
81371146 AAATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
1 AAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
*
81371211 CATAAATTGA
66 -ATAGATT-A
** * ** * * * *
81371221 ACAGA-AATTGAAAAT-ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 A-A-ATACCTCAACGTGTCCT-GA-G-G-C-TCA-ACTC-AC-C---TCTCGCAATATGAGTTGA
*
81371284 --GTTTTGAAACAAA-A-ATTA
53 TTTTTTTGAAA-AAATAGATTA
* *
81371302 ACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
1 A-AATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
81371367 GCATAAATTA
Statistics
Matches: 238, Mismatches: 37, Indels: 46
0.74 0.12 0.14
Matches are distributed among these distances:
71 18 0.08
72 1 0.00
73 8 0.03
74 65 0.27
75 64 0.27
76 14 0.06
77 10 0.04
78 2 0.01
79 2 0.01
80 4 0.02
81 12 0.05
82 7 0.03
83 2 0.01
84 9 0.04
85 2 0.01
86 18 0.08
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (73 bp):
AAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
ATAGATTA
Found at i:81371311 original size:71 final size:71
Alignment explanation
Indices: 81371220--81371359 Score: 201
Period size: 71 Copynumber: 2.0 Consensus size: 71
81371210 ACATAAATTG
* ** **
81371220 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAG
1 AACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAG
81371285 TTTTGA
66 TTTTGA
*
81371291 AACAAAAATT-AACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAAAAATTGAA-AATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
81371355 TTTTT
65 GTTTT
81371360 TTGAAAAGCA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
70 2 0.03
71 59 0.97
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (71 bp):
AACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAG
TTTTGA
Found at i:81371327 original size:487 final size:487
Alignment explanation
Indices: 81370352--81371696 Score: 2511
Period size: 487 Copynumber: 2.8 Consensus size: 487
81370342 ACGTGAGCAA
* * * * *
81370352 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTTGAAAA-CAGAATTTGCAAAACAGATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATT--AAAAAACATT
81370414 --TTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTT
64 AATTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTT
81370477 TGAAAAACATAAATTGAAAAACGGAAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCA
129 TGAAAAACATAAATTGAAAAACGGAAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCA
81370542 CCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAACTACCTCAGCGTGTCCTGAG
194 CCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAACTACCTCAGCGTGTCCTGAG
81370607 GTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAATAGATTGAAAATACCTTAACG
259 GTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAATAGATTGAAAATACCTTAACG
81370672 TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAACA
324 TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAACA
81370737 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTT
389 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTT
81370802 GAAACAAAAATTAACAATACCTCAGCGTGTCCCG
454 GAAACAAAAATTAACAATACCTCAGCGTGTCCCG
81370836 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTAAAAAACATTAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTAAAAAACATTAA
81370901 TTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTG
66 TTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTG
81370966 AAAAACATAAATTGAAAAACGGAAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCACC
131 AAAAACATAAATTGAAAAACGGAAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCACC
81371031 TCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAACTACCTCAGCGTGTCCTGAGGT
196 TCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAACTACCTCAGCGTGTCCTGAGGT
81371096 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAATAGATTGAAAATACCTTAACGTG
261 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAATAGATTGAAAATACCTTAACGTG
81371161 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAACAGA
326 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAACAGA
81371226 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGA
391 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGA
81371291 AACAAAAATTAACAATACCTCAGCGTGTCCCG
456 AACAAAAATTAACAATACCTCAGCGTGTCCCG
81371323 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTAAAAAACATTAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTAAAAAACATTAA
81371388 TTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTG
66 TTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTG
* * *
81371453 AAAAACATAAATTGAAAAAACAGAAATTGTAAATACCTCAACATGTGACCTGAGGTTCAATTCAC
131 AAAAACATAAATTG-AAAAACGGAAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCAC
*
81371518 TTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAACTACCTCAGCGTGTCCTGAGG
195 CTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAACTACCTCAGCGTGTCCTGAGG
* * *
81371583 TTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAATATATTGAAAATACCTCAACGT
260 TTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAATAGATTGAAAATACCTTAACGT
*
81371648 GTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTTTGAAA
325 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
81371697 CAGAAATAAA
Statistics
Matches: 842, Mismatches: 13, Indels: 8
0.98 0.02 0.01
Matches are distributed among these distances:
484 31 0.04
485 8 0.01
486 10 0.01
487 572 0.68
488 221 0.26
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (487 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTAAAAAACATTAA
TTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTG
AAAAACATAAATTGAAAAACGGAAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCACC
TCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAACTACCTCAGCGTGTCCTGAGGT
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAATAGATTGAAAATACCTTAACGTG
TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAACAGA
AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGA
AACAAAAATTAACAATACCTCAGCGTGTCCCG
Found at i:81371447 original size:92 final size:92
Alignment explanation
Indices: 81371322--81371545 Score: 319
Period size: 90 Copynumber: 2.5 Consensus size: 92
81371312 AGCGTGTCCC
* * **
81371322 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATT-AAAAAACATT
1 GAGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAAACAGA
**
81371386 AATTGAAAATACCTCGGCATGTGATCCT
66 AATTGAAAATACCTCAACATGTGA-CCT
* *
81371414 GAGGCTCAATTCACCTCTAGCAATATGAATTGA--TTTTTGAAAAACATAAATTGAAAAAACAGA
1 GAGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAAACAGA
*
81371477 AATTGTAAATACCTCAACATGTGACCT
66 AATTGAAAATACCTCAACATGTGACCT
* *
81371504 GAGGTTCAATTCACTTCTCGCAATATGAGTTGATTTTTTTGA
1 GAGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTGA
81371546 TGAACAGAAA
Statistics
Matches: 116, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
90 50 0.43
91 29 0.25
92 37 0.32
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (92 bp):
GAGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAAACAGA
AATTGAAAATACCTCAACATGTGACCT
Found at i:81371513 original size:90 final size:90
Alignment explanation
Indices: 81371290--81371541 Score: 307
Period size: 90 Copynumber: 2.8 Consensus size: 90
81371280 TTGAGTTTTG
* * * *
81371290 AAACAAAAATT-AACAATACCTCAGC--GTG-TCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAACAGAAATTGAA-AATACCTCAACATGTGATCCTGAGGCTCAATTCACCTCTCGCAATATGAG
*
81371351 TTGATTTTTTTGAAAAGCATAAATTAAA
65 TTGA--TTTTTGAAAAACATAAATTAAA
** ** * *
81371379 AAACATTAATTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAGCAATATGAAT
1 AAACAGAAATTGAAAATACCTCAACATGTGATCCTGAGGCTCAATTCACCTCTCGCAATATGAGT
81371444 TGATTTTTGAAAAACATAAATTGAAA
66 TGATTTTTGAAAAACATAAATT-AAA
* * *
81371470 AAACAGAAATTGTAAATACCTCAACATGTGA-CCTGAGGTTCAATTCACTTCTCGCAATATGAGT
1 AAACAGAAATTGAAAATACCTCAACATGTGATCCTGAGGCTCAATTCACCTCTCGCAATATGAGT
81371534 TGATTTTT
66 TGATTTTT
81371542 TTGATGAACA
Statistics
Matches: 141, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
89 19 0.13
90 57 0.40
91 32 0.23
92 33 0.23
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (90 bp):
AAACAGAAATTGAAAATACCTCAACATGTGATCCTGAGGCTCAATTCACCTCTCGCAATATGAGT
TGATTTTTGAAAAACATAAATTAAA
Found at i:81371598 original size:75 final size:72
Alignment explanation
Indices: 81371470--81371708 Score: 300
Period size: 74 Copynumber: 3.2 Consensus size: 72
81371460 TAAATTGAAA
* * * *
81371470 AAACAGAAATTGTAAATACCTCAACATGTGACCTGAGGTTCAATTCACTTCTCGCAATATGAGTT
1 AAACAGAAATT-AAAATACCTCAAC--GTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTT
81371535 GATTTTTTTG
63 GATTTTTTTG
*
81371545 ATGAACAGAAATTAAAACTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTT
1 A--AACAGAAATTAAAA-TACCTCAACGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTT
81371610 GATTTTTTTG
63 GATTTTTTTG
* * * *
81371620 AAA-AAATATATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTT
1 AAACAGA-A-ATT-AAAATACCTCAACGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTT
81371684 GATTTTTTTG
63 GATTTTTTTG
*
81371694 AAACAGAAATAAAAA
1 AAACAGAAATTAAAA
81371709 ATATCAAAAT
Statistics
Matches: 145, Mismatches: 12, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
72 6 0.04
73 5 0.03
74 60 0.41
75 53 0.37
76 3 0.02
77 18 0.12
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
AAACAGAAATTAAAATACCTCAACGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTG
Found at i:81391881 original size:25 final size:23
Alignment explanation
Indices: 81391829--81391883 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
81391819 TATAAATAGT
81391829 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
81391852 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
81391877 AATAGTG
1 AATAGTG
81391884 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:81392313 original size:17 final size:18
Alignment explanation
Indices: 81392283--81392319 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
81392273 CTAATAACAT
*
81392283 TAAAATATATATAATATA
1 TAAAATACATATAATATA
81392301 TAAAATACA-ATAATATA
1 TAAAATACATATAATATA
81392318 TA
1 TA
81392320 TATTAGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAAATACATATAATATA
Found at i:81392411 original size:19 final size:19
Alignment explanation
Indices: 81392387--81392423 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
81392377 TATAAATAAT
*
81392387 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
81392406 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
81392424 TATAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:81392519 original size:24 final size:24
Alignment explanation
Indices: 81392477--81392533 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 24
81392467 TATACACAAT
*
81392477 AATATATAACATACAATAT-TGAAA
1 AATATAT-ACATACAATATACGAAA
81392501 ACATATATACATA-ATATATACGAAA
1 A-ATATATACATACA-ATATACGAAA
81392526 AATATATA
1 AATATATA
81392534 GATATACATA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
23 1 0.03
24 17 0.59
25 11 0.38
ACGTcount: A:0.58, C:0.09, G:0.04, T:0.30
Consensus pattern (24 bp):
AATATATACATACAATATACGAAA
Found at i:81392558 original size:30 final size:30
Alignment explanation
Indices: 81392505--81392579 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
81392495 TTGAAAACAT
*
81392505 ATATACATAATATATACGAAAAATATATAG
1 ATATACATAATATATACGAAAAATATATAC
** *
81392535 ATATACATAATATAATA-TTAAAATATTTAC
1 ATATACATAATAT-ATACGAAAAATATATAC
81392565 ATAATACATAA-ATAT
1 AT-ATACATAATATAT
81392580 TAGGGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 2 0.05
30 26 0.67
31 11 0.28
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.35
Consensus pattern (30 bp):
ATATACATAATATATACGAAAAATATATAC
Found at i:81392625 original size:12 final size:12
Alignment explanation
Indices: 81392608--81392662 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
81392598 ATAATAATGC
*
81392608 TACATAAGTATA
1 TACATAAATATA
81392620 TACATAAATATA
1 TACATAAATATA
*
81392632 TTA-A-AAACATA
1 -TACATAAATATA
*
81392643 TACATATATATA
1 TACATAAATATA
*
81392655 TAAATAAA
1 TACATAAA
81392663 AAAAATACAC
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
10 2 0.06
11 7 0.21
12 23 0.68
13 2 0.06
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (12 bp):
TACATAAATATA
Found at i:81392655 original size:25 final size:23
Alignment explanation
Indices: 81392617--81392681 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 23
81392607 CTACATAAGT
*
81392617 ATATACATAA-ATATATTAAAAA
1 ATATACATAATATATAATAAAAA
81392639 CATATACATATATATATAAATAAAAA
1 -ATATACATA-ATATAT-AATAAAAA
*
81392665 AAATACACTAATATATA
1 ATATACA-TAATATATA
81392682 GTAATCATGA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
23 9 0.25
24 2 0.06
25 16 0.44
26 9 0.25
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (23 bp):
ATATACATAATATATAATAAAAA
Found at i:81396224 original size:16 final size:16
Alignment explanation
Indices: 81396205--81396236 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81396195 AAGTCTAGAA
81396205 AAATCATATAAAATGT
1 AAATCATATAAAATGT
81396221 AAATCATATAAAATGT
1 AAATCATATAAAATGT
81396237 GGCAAGTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (16 bp):
AAATCATATAAAATGT
Found at i:81398141 original size:26 final size:26
Alignment explanation
Indices: 81398103--81398163 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
81398093 AATATTATAA
* * * *
81398103 AAAAAATAAAAAACTGTAAAAAATTGT
1 AAAAATTATAAAACTAT-AAAAATTAT
81398130 -AAAATTATAAAACTATAAAAATTAT
1 AAAAATTATAAAACTATAAAAATTAT
81398155 AAAAATTAT
1 AAAAATTAT
81398164 CAATAATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 8 0.28
26 21 0.72
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (26 bp):
AAAAATTATAAAACTATAAAAATTAT
Found at i:81398171 original size:10 final size:9
Alignment explanation
Indices: 81398121--81398173 Score: 56
Period size: 9 Copynumber: 6.0 Consensus size: 9
81398111 AAAAACTGTA
*
81398121 AAAAATTGT
1 AAAAATTAT
81398130 -AAAATTAT
1 AAAAATTAT
*
81398138 -AAAACTAT
1 AAAAATTAT
81398146 AAAAATTAT
1 AAAAATTAT
81398155 AAAAATTAT
1 AAAAATTAT
*
81398164 CAATAATTAT
1 -AAAAATTAT
81398174 TAAGAGTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
8 14 0.37
9 16 0.42
10 8 0.21
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:81398266 original size:19 final size:19
Alignment explanation
Indices: 81398242--81398285 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
81398232 ATAAAATGTT
81398242 ATAAAATGTTAAAATATAA
1 ATAAAATGTTAAAATATAA
*
81398261 ATAAAATGTTATAATATAA
1 ATAAAATGTTAAAATATAA
*
81398280 TTAAAA
1 ATAAAA
81398286 GTTGTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (19 bp):
ATAAAATGTTAAAATATAA
Found at i:81398841 original size:16 final size:16
Alignment explanation
Indices: 81398801--81398845 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
81398791 TTGGATTAGT
* *
81398801 TCAAGTTCGAATTTTT
1 TCAAGTTTGAATTTTC
81398817 TCAAGTTTGAATTTTC
1 TCAAGTTTGAATTTTC
81398833 TCATA-TTTGAATT
1 TCA-AGTTTGAATT
81398846 GTTACGAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 25 0.96
17 1 0.04
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.51
Consensus pattern (16 bp):
TCAAGTTTGAATTTTC
Found at i:81404719 original size:34 final size:34
Alignment explanation
Indices: 81404667--81404734 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
81404657 AAGGTCAAAT
81404667 GCAGTCTCGGCCTAAGCCCATTTCAATTTCAGTA
1 GCAGTCTCGGCCTAAGCCCATTTCAATTTCAGTA
* *
81404701 GCAGTC-CGAGCCTTAGCCCATTTCAGTTTCAGTA
1 GCAGTCTCG-GCCTAAGCCCATTTCAATTTCAGTA
81404735 TCAAATATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 2 0.06
34 29 0.94
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (34 bp):
GCAGTCTCGGCCTAAGCCCATTTCAATTTCAGTA
Found at i:81405464 original size:35 final size:35
Alignment explanation
Indices: 81405412--81405486 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
81405402 AAGGCCTACT
*
81405412 TGGCTATCACACAGCCGTGTCTTGTGCGCATGACC
1 TGGCCATCACACAGCCGTGTCTTGTGCGCATGACC
*
81405447 TGGCCATCACACGGCCGTGTCTTGTGCGCATGACC
1 TGGCCATCACACAGCCGTGTCTTGTGCGCATGACC
81405482 TGGCC
1 TGGCC
81405487 TCGCCGATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.15, C:0.33, G:0.28, T:0.24
Consensus pattern (35 bp):
TGGCCATCACACAGCCGTGTCTTGTGCGCATGACC
Found at i:81413203 original size:42 final size:42
Alignment explanation
Indices: 81413156--81413244 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
81413146 TTACGTGCTG
81413156 TTTTATTGAAGATATGATTGGATTTGTGTGAATCTATTAAAC
1 TTTTATTGAAGATATGATTGGATTTGTGTGAATCTATTAAAC
81413198 TTTTATTGAAGATATGATTGGATTTGTGTGAATCTATTAAAC
1 TTTTATTGAAGATATGATTGGATTTGTGTGAATCTATTAAAC
81413240 TTTTA
1 TTTTA
81413245 GAATGTAAAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.47
Consensus pattern (42 bp):
TTTTATTGAAGATATGATTGGATTTGTGTGAATCTATTAAAC
Found at i:81416127 original size:24 final size:24
Alignment explanation
Indices: 81416100--81416156 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
81416090 AAAATACAAG
* *
81416100 TTTAAAAT-TTAATAATTTTTATTT
1 TTTAAAATATTAATAA-ATTTATCT
* *
81416124 TTTATAATATTATTAAATTTATCT
1 TTTAAAATATTAATAAATTTATCT
81416148 TTTAAAATA
1 TTTAAAATA
81416157 AAAAGTTGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 21 0.78
25 6 0.22
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTAAAATATTAATAAATTTATCT
Found at i:81417493 original size:22 final size:22
Alignment explanation
Indices: 81417468--81417515 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
81417458 AATTATGATC
*
81417468 ATTACTTTAATTGCAAT-ATTTA
1 ATTACTATAATT-CAATGATTTA
*
81417490 ATTACTATAATTCATTGATTTA
1 ATTACTATAATTCAATGATTTA
81417512 ATTA
1 ATTA
81417516 TTAATTTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (22 bp):
ATTACTATAATTCAATGATTTA
Found at i:81420662 original size:66 final size:66
Alignment explanation
Indices: 81420556--81420688 Score: 158
Period size: 66 Copynumber: 2.0 Consensus size: 66
81420546 GCTTAGGTAC
* * * * *
81420556 AAACTTTGCTCTAAAAACATGTTCCTCTCGATGAACAAAATAAGCGCTCTCTCCAATTTGTACAC
1 AAACTTTGCTCTAAAAACATATTCCTCTCAATAAACAAAATAAGCACTCCCTCCAATTTGTACAC
81420621 A
66 A
* * * * * **
81420622 AAACTTTGGTCTAAATACATATTTCTTTCAATAAACAAAATAAGTACTCCCTTTAATTTGTACAC
1 AAACTTTGCTCTAAAAACATATTCCTCTCAATAAACAAAATAAGCACTCCCTCCAATTTGTACAC
81420687 A
66 A
81420688 A
1 A
81420689 TTAAATAAAC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (66 bp):
AAACTTTGCTCTAAAAACATATTCCTCTCAATAAACAAAATAAGCACTCCCTCCAATTTGTACAC
A
Found at i:81423038 original size:75 final size:74
Alignment explanation
Indices: 81422915--81423064 Score: 255
Period size: 75 Copynumber: 2.0 Consensus size: 74
81422905 ATTGCCTCTA
* *
81422915 TACAAGGTATTATCGGTATGTCATTCCCATAGCTGATTCCAGTTGGGTTACCACCCTATGCCCTA
1 TACAAGGTATTATCAGTATGTCATTCCCATAACTGATTCCAGTTGGGTTACCACCCTATG-CCTA
81422980 CCGGCTTCAT
65 CCGGCTTCAT
*
81422990 TACAAGGTATTATCAGTATGTCATTCCCATAACTGATTCTAGTTGGGTTACCACCCTATGCCTAC
1 TACAAGGTATTATCAGTATGTCATTCCCATAACTGATTCCAGTTGGGTTACCACCCTATGCCTAC
*
81423055 CGGGTTCAT
66 CGGCTTCAT
81423064 T
1 T
81423065 GTTTATTACT
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
74 14 0.20
75 57 0.80
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (74 bp):
TACAAGGTATTATCAGTATGTCATTCCCATAACTGATTCCAGTTGGGTTACCACCCTATGCCTAC
CGGCTTCAT
Found at i:81429778 original size:12 final size:11
Alignment explanation
Indices: 81429762--81429791 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
81429752 GTATATTTTA
81429762 TTTTATATATT
1 TTTTATATATT
81429773 TCTTTATATATT
1 T-TTTATATATT
81429785 TTTTATA
1 TTTTATA
81429792 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:81430234 original size:14 final size:14
Alignment explanation
Indices: 81430215--81430244 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81430205 TCTATCTTTC
*
81430215 TTATATATTTTTTA
1 TTATATATTATTTA
81430229 TTATATATTATTTA
1 TTATATATTATTTA
81430243 TT
1 TT
81430245 TTGTTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATATTATTTA
Found at i:81432027 original size:14 final size:14
Alignment explanation
Indices: 81432010--81432039 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81432000 TTGTACATGA
81432010 AATTCTTTCAATGG
1 AATTCTTTCAATGG
*
81432024 AATTCTTTTAATGG
1 AATTCTTTCAATGG
81432038 AA
1 AA
81432040 ACTGTGCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (14 bp):
AATTCTTTCAATGG
Found at i:81435683 original size:23 final size:20
Alignment explanation
Indices: 81435626--81435673 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
81435616 ACATATAAAA
*
81435626 ATATAAT-AAAATAAAT-A-
1 ATATAATAAAAATATATAAC
81435643 ATATAATAAAAATATATAAC
1 ATATAATAAAAATATATAAC
81435663 ATATAATAAAA
1 ATATAATAAAA
81435674 TTTATATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 7 0.26
18 8 0.30
19 1 0.04
20 11 0.41
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
ATATAATAAAAATATATAAC
Found at i:81435686 original size:18 final size:17
Alignment explanation
Indices: 81435625--81435687 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 17
81435615 TACATATAAA
*
81435625 AATATAATAAAATAAAT
1 AATATAATAAAATATAT
81435642 AATATAATAAAAATATAT
1 AATATAAT-AAAATATAT
*
81435660 AACATATAATAAAATTTAT
1 -A-ATATAATAAAATATAT
81435679 ATATATAAT
1 A-ATATAAT
81435688 GTTACAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
17 8 0.20
18 16 0.40
19 9 0.22
20 7 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
AATATAATAAAATATAT
Found at i:81451419 original size:126 final size:127
Alignment explanation
Indices: 81451290--81451811 Score: 633
Period size: 126 Copynumber: 4.1 Consensus size: 127
81451280 TGACAAGGAT
* * * * * *
81451290 TTTTTTTCTATAGTAGTTTTAGAAAAATTAATTTTCAGAAGACGGTTCTGAAAAGATAATGTCAA
1 TTTTTTTCTACAGTAGTTTCAGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAA
* * * * * * *
81451355 AAACGCTTTAGGTAGGATGCACTGTTAGCAAAATTACTGAAAAAAA-CTCTCACGTGGAC-T
66 AAACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAAGCTCCCACGTGGACGC
* * * *
81451415 TTTTTTTCTACAGTAGTTCCAAAAAAAATAATTTTGAGAAGATGGTTCTAAAAAAATAGTGTCAA
1 TTTTTTTCTACAGTAGTTTCAGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAA
* * **
81451480 AAATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACT-AAAAAAAGCTCTTACGTGGACGC
66 AAACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAAGCTCCCACGTGGACGC
* * * *
81451541 TTTTTTTCTACAGTAG-TTCTTGAAAAAATAATTTTGAGAATACGATTTTGAAAAAATAGTGTCA
1 TTTTTTTCTACAGTAGTTTC-AGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCA
* * * *
81451605 AAAACACTTCAAGCAGGATGCACTATTAGCAAAATTACTG-AAGAAAGCTCCCACGTGAACGC
65 AAAACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAAGCTCCCACGTGGACGC
* * * *
81451667 TCTTTTTATACAGTA-ATTCATGAAAAAATAATTTTGAGAAGACGGTTTTGAAAAAATAGTGTCA
1 TTTTTTTCTACAGTAGTTTCA-GAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCA
* * * * *
81451731 AAAACGCTTCAAGCAAGATGGACTATCAGGAAAATTACTAAAAAAAAGCTCCCACGTGGATGC
65 AAAACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAAGCTCCCACGTGGACGC
*
81451794 TCTTTTTCTACAGTAGTT
1 TTTTTTTCTACAGTAGTT
81451812 CCTGCTTGGC
Statistics
Matches: 340, Mismatches: 49, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
124 7 0.02
125 102 0.30
126 197 0.58
127 33 0.10
128 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.30
Consensus pattern (127 bp):
TTTTTTTCTACAGTAGTTTCAGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAA
AAACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAAGCTCCCACGTGGACGC
Found at i:81454149 original size:19 final size:19
Alignment explanation
Indices: 81454125--81454176 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
81454115 TATTATTATT
*
81454125 AGTATATGTTTACTATATA
1 AGTATATGTTTAATATATA
*
81454144 AGTATATATCTTTAATATATA
1 AG--TATATGTTTAATATATA
*
81454165 TGTATATGTTTA
1 AGTATATGTTTA
81454177 TGCAGTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 11 0.41
21 16 0.59
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (19 bp):
AGTATATGTTTAATATATA
Found at i:81454157 original size:21 final size:21
Alignment explanation
Indices: 81454127--81454171 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
81454117 TTATTATTAG
* *
81454127 TATATGTTTACTATATAAGTA
1 TATATCTTTAATATATAAGTA
*
81454148 TATATCTTTAATATATATGTA
1 TATATCTTTAATATATAAGTA
81454169 TAT
1 TAT
81454172 GTTTATGCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (21 bp):
TATATCTTTAATATATAAGTA
Found at i:81454267 original size:23 final size:21
Alignment explanation
Indices: 81454206--81454330 Score: 69
Period size: 23 Copynumber: 5.7 Consensus size: 21
81454196 GTTTTGTAAC
81454206 ATTAT-TAT-TATTTCTAATAT
1 ATTATGTATATATTT-TAATAT
* * *
81454226 -GTATATATATATTAATAACTAT
1 ATTATGTATATATT-TTAA-TAT
*
81454248 ATTATGTATGTATTTTTAACACTAT
1 ATTATGTATATA-TTTT-A-A-TAT
* *
81454273 TTTGTGTATATACTTTTAATATT
1 ATTATGTATATA-TTTTAATA-T
*
81454296 ATTATGTATTTATTTTAATAT
1 ATTATGTATATATTTTAATAT
*
81454317 A-TATGTACATATTT
1 ATTATGTATATATTT
81454331 ATGTAGTATT
Statistics
Matches: 81, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
19 3 0.04
20 14 0.17
21 9 0.11
22 13 0.16
23 20 0.25
24 4 0.05
25 18 0.22
ACGTcount: A:0.34, C:0.05, G:0.06, T:0.55
Consensus pattern (21 bp):
ATTATGTATATATTTTAATAT
Found at i:81454280 original size:25 final size:25
Alignment explanation
Indices: 81454243--81454313 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 25
81454233 TATATTAATA
* *
81454243 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTATATACTTTTAAC
* * *
81454268 ACTATTTTGTGTATATACTTTTAAT
1 ACTATATTATGTATATACTTTTAAC
*
81454293 A-T-TATTATGTATTTA-TTTTAA
1 ACTATATTATGTATATACTTTTAA
81454314 TATATATGTA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
22 6 0.16
23 10 0.26
24 1 0.03
25 21 0.55
ACGTcount: A:0.31, C:0.06, G:0.07, T:0.56
Consensus pattern (25 bp):
ACTATATTATGTATATACTTTTAAC
Found at i:81454311 original size:22 final size:21
Alignment explanation
Indices: 81454277--81454323 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
81454267 CACTATTTTG
81454277 TGTATATACTTTTAATATTATTA
1 TGTATATACTTTTAATA-TA-TA
*
81454300 TGTATTTA-TTTTAATATATA
1 TGTATATACTTTTAATATATA
81454320 TGTA
1 TGTA
81454324 CATATTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 6 0.26
21 2 0.09
22 8 0.35
23 7 0.30
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (21 bp):
TGTATATACTTTTAATATATA
Found at i:81454329 original size:20 final size:22
Alignment explanation
Indices: 81454277--81454330 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 22
81454267 CACTATTTTG
*
81454277 TGTATATACTTTTAATATTATTA
1 TGTACATA-TTTTAATATTATTA
**
81454300 TGTATTTATTTTAATA-TA-TA
1 TGTACATATTTTAATATTATTA
81454320 TGTACATATTT
1 TGTACATATTT
81454331 ATGTAGTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 11 0.39
21 2 0.07
22 8 0.29
23 7 0.25
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (22 bp):
TGTACATATTTTAATATTATTA
Found at i:81454329 original size:24 final size:22
Alignment explanation
Indices: 81454286--81454357 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
81454276 GTGTATATAC
**
81454286 TTTTAATATTATTATGTATTTA
1 TTTTAATATTATTACATATTTA
81454308 TTTTAATATATATGTACATATTTA
1 TTTTAATAT-TAT-TACATATTTA
* *
81454332 -TGTAGTATTATTA-ATATATATA
1 TTTTAATATTATTACATAT-T-TA
81454354 TTTT
1 TTTT
81454358 TTATGTTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
20 4 0.10
21 3 0.08
22 14 0.35
23 11 0.28
24 8 0.20
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (22 bp):
TTTTAATATTATTACATATTTA
Found at i:81454394 original size:13 final size:13
Alignment explanation
Indices: 81454378--81454440 Score: 58
Period size: 13 Copynumber: 4.7 Consensus size: 13
81454368 AGTATTTCTA
*
81454378 ATATGTATTGTAT
1 ATATATATTGTAT
*
81454391 ATAT-TCATTTTAT
1 ATATAT-ATTGTAT
81454404 ATATAT-TATGTAT
1 ATATATAT-TGTAT
81454417 ATATATATTATGTAT
1 ATATATA-T-TGTAT
81454432 ATATATATT
1 ATATATATT
81454441 TAGTATTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
12 2 0.05
13 25 0.58
14 2 0.05
15 14 0.33
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATATATTGTAT
Found at i:81454446 original size:15 final size:15
Alignment explanation
Indices: 81454388--81454440 Score: 81
Period size: 15 Copynumber: 3.5 Consensus size: 15
81454378 ATATGTATTG
*
81454388 TATATATTCAT-TTTA
1 TATATATT-ATGTATA
81454403 TATATATTATGTATA
1 TATATATTATGTATA
81454418 TATATATTATGTATA
1 TATATATTATGTATA
81454433 TATATATT
1 TATATATT
81454441 TAGTATTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
14 2 0.06
15 34 0.94
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.57
Consensus pattern (15 bp):
TATATATTATGTATA
Found at i:81458315 original size:22 final size:22
Alignment explanation
Indices: 81458289--81458333 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
81458279 ATTCATGACT
81458289 AACATTCATTCGTCAGTTATTC
1 AACATTCATTCGTCAGTTATTC
* *
81458311 AACATTCATTTGTCATTTATTC
1 AACATTCATTCGTCAGTTATTC
81458333 A
1 A
81458334 TTCATCCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.44
Consensus pattern (22 bp):
AACATTCATTCGTCAGTTATTC
Found at i:81466828 original size:78 final size:73
Alignment explanation
Indices: 81466634--81466905 Score: 386
Period size: 78 Copynumber: 3.7 Consensus size: 73
81466624 TGATGTTTTT
* *
81466634 ATTTCT-ATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
81466698 TATTTTCA
66 TATTTTCA
* * *
81466706 ATTTCT-ATCTTTCAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGA
1 ATTTCTGAT-TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
81466770 GGTATTTCTTTTCA
64 GGTA----TTTTCA
*
81466784 ATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 ATTTCTGATTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
81466849 GTATTTTCA
65 GTATTTTCA
* * *
81466858 ATTTATGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGC
1 ATTTCTGATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
81466906 TTTGGGTCAC
Statistics
Matches: 181, Mismatches: 12, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
72 8 0.04
73 38 0.21
74 66 0.36
78 68 0.38
79 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (73 bp):
ATTTCTGATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TATTTTCA
Found at i:81467017 original size:88 final size:89
Alignment explanation
Indices: 81466852--81467082 Score: 267
Period size: 88 Copynumber: 2.6 Consensus size: 89
81466842 CGCTGAGGTA
* * * *
81466852 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTTGGGTCACA
1 TTTTCAAATTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTATGGGTCACA
* *
81466917 TGTCGAGGTATTTTCAAAATCTTT
66 TGTCGAGCTATTTTCAAAATCTGT
81466941 TTTTCAAATTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC-ATGGGCTCAC
1 TTTTCAAATTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTATGGG-TCAC
**
81467004 GA-G-CTGAGCTATTTTCAATTTCTGT
65 -ATGTC-GAGCTATTTTCAAAATCTGT
* * *
81467029 TTTT--AATGTCTGTTTTTTTAAAGAGTCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTCAAAT-TCTG-TTTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAG
81467083 GTCAGGATCA
Statistics
Matches: 124, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
86 3 0.02
87 9 0.07
88 64 0.52
89 19 0.15
90 29 0.23
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (89 bp):
TTTTCAAATTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTATGGGTCACA
TGTCGAGCTATTTTCAAAATCTGT
Found at i:81468808 original size:29 final size:31
Alignment explanation
Indices: 81468745--81468809 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 31
81468735 TTAATCTTCA
* **
81468745 TATTATTACTATTATTTCTTTATTTTTATTT
1 TATTATTACTATTATATCTTTATTTTTATAG
81468776 TATT-TTA-TATTATATCTTTAGTTTTT-TAG
1 TATTATTACTATTATATCTTTA-TTTTTATAG
81468805 TATTA
1 TATTA
81468810 GTTTTAGCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
29 17 0.59
30 8 0.28
31 4 0.14
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (31 bp):
TATTATTACTATTATATCTTTATTTTTATAG
Found at i:81468956 original size:24 final size:23
Alignment explanation
Indices: 81468926--81468986 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 23
81468916 ATACATTATG
81468926 TGTATATTCTTTTAATAGATATTA
1 TGTATATTCTTTTAATA-ATATTA
* *
81468950 TGTATA-TATTTTAATATTATTA
1 TGTATATTCTTTTAATAATATTA
81468972 -GTTATATATCTTTTA
1 TG-TATAT-TCTTTTA
81468987 TACTATTGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.03
22 9 0.29
23 9 0.29
24 12 0.39
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (23 bp):
TGTATATTCTTTTAATAATATTA
Found at i:81469131 original size:17 final size:17
Alignment explanation
Indices: 81469109--81469148 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
81469099 TCATTTCTAA
81469109 ATATATGTATATAT-TGT
1 ATATATGTATATATAT-T
*
81469126 ATATATTTATATATATT
1 ATATATGTATATATATT
81469143 ATATAT
1 ATATAT
81469149 ATTTTAATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 20 0.95
18 1 0.05
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
ATATATGTATATATATT
Found at i:81469131 original size:19 final size:19
Alignment explanation
Indices: 81469109--81469150 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
81469099 TCATTTCTAA
* *
81469109 ATATATGTATATATTGTAT
1 ATATATATATATATTATAT
*
81469128 ATATTTATATATATTATAT
1 ATATATATATATATTATAT
81469147 ATAT
1 ATAT
81469151 TTTAATGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
ATATATATATATATTATAT
Found at i:81469161 original size:17 final size:19
Alignment explanation
Indices: 81469116--81469152 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
81469106 TAAATATATG
*
81469116 TATATATTGTATATATTTA
1 TATATATTATATATATTTA
81469135 TATATATTATATATATTT
1 TATATATTATATATATTT
81469153 TAATGTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
TATATATTATATATATTTA
Found at i:81469510 original size:19 final size:18
Alignment explanation
Indices: 81469486--81469537 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 18
81469476 ATTATTATTA
81469486 GTATATGTTTACTATATAT
1 GTATATGTTTA-TATATAT
*
81469505 GTATATATCTTTTATATATAT
1 G--TATAT-GTTTATATATAT
81469526 GTATATGTTTAT
1 GTATATGTTTAT
81469538 GCAGTATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 5 0.18
19 6 0.21
21 13 0.46
22 4 0.14
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.56
Consensus pattern (18 bp):
GTATATGTTTATATATAT
Found at i:81469635 original size:25 final size:25
Alignment explanation
Indices: 81469582--81469674 Score: 64
Period size: 25 Copynumber: 3.7 Consensus size: 25
81469572 ATTATTTCTA
* * *
81469582 ATATGTATATATATATATTTAATAACT
1 ATAT-TATGTATATATTTTTAA-CACT
*
81469609 ATATTATGTATGTATTTTTAACACT
1 ATATTATGTATATATTTTTAACACT
* * * **
81469634 ATTTTGTGTATATACTTTTATTA-T
1 ATATTATGTATATATTTTTAACACT
*
81469658 -TATTATGTATTTATTTT
1 ATATTATGTATATATTTT
81469675 AATATATATG
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
23 13 0.25
24 1 0.02
25 20 0.38
26 14 0.27
27 4 0.08
ACGTcount: A:0.32, C:0.04, G:0.06, T:0.57
Consensus pattern (25 bp):
ATATTATGTATATATTTTTAACACT
Found at i:81474722 original size:4 final size:4
Alignment explanation
Indices: 81474701--81474748 Score: 57
Period size: 4 Copynumber: 12.8 Consensus size: 4
81474691 TAACCAATCT
* *
81474701 ATAA A-AA AT-A AT-A ATAA ATAA ATAA ATAA ACAA ACAA ATAA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
81474746 ATA
1 ATA
81474749 TTGAATATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
3 9 0.22
4 31 0.77
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (4 bp):
ATAA
Found at i:81474931 original size:3 final size:3
Alignment explanation
Indices: 81474925--81475114 Score: 108
Period size: 3 Copynumber: 63.3 Consensus size: 3
81474915 CATTAATAGG
* * *
81474925 AAT AAT AAT ATT AAT AAT AAC AAT AAC AGA- AA- AAT AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* * * *
81474968 AAT AAT AAT AAC AAT AA- AAT AAT GAAT AAT GAC AAC AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
* ** * *
81475012 AAAT AAT AAT AGA- AA- AAC AAT AAT AGA- AAT AGC AAC GAT AAT AAT
1 -AAT AAT AAT A-AT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* * *
81475057 AAAT AAT AAG AGT AAT AGT AAT AAT AAT AAT AAT AAAT AAT AAT AAT
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
*
81475104 ATGT AAT AAT A
1 A-AT AAT AAT A
81475115 CTCTAAACAT
Statistics
Matches: 147, Mismatches: 26, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
2 13 0.09
3 118 0.80
4 16 0.11
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:81475074 original size:31 final size:31
Alignment explanation
Indices: 81475016--81475089 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 31
81475006 TAATATAAAT
* * *
81475016 AATAATAGAAAAACAATAATAGAAATAGCAAC
1 AATAATA-ATAAATAATAAGAGAAATAGCAAC
* * * *
81475048 GATAATAATAAATAATAAGAGTAATAGTAAT
1 AATAATAATAAATAATAAGAGAAATAGCAAC
81475079 AATAATAATAA
1 AATAATAATAA
81475090 TAAATAATAA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
31 28 0.82
32 6 0.18
ACGTcount: A:0.64, C:0.04, G:0.09, T:0.23
Consensus pattern (31 bp):
AATAATAATAAATAATAAGAGAAATAGCAAC
Found at i:81479536 original size:26 final size:26
Alignment explanation
Indices: 81479499--81479554 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
81479489 TGATACAAAT
81479499 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
81479525 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
81479551 TGAT
1 TGAT
81479555 TAGAATTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:81481217 original size:27 final size:27
Alignment explanation
Indices: 81481176--81481288 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
81481166 GAGGAAGCGT
*
81481176 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
81481203 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
81481230 TCTGGTGGCCCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
81481258 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
81481284 TCTGG
1 TCTGG
81481289 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.07
27 54 0.74
28 14 0.19
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:81481281 original size:54 final size:54
Alignment explanation
Indices: 81481174--81481297 Score: 160
Period size: 54 Copynumber: 2.3 Consensus size: 54
81481164 TGGAGGAAGC
* *
81481174 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCCATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
81481228 GTTCTGGTGGCCCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCCATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
**
81481282 GTTCTGGCAGCCATGC
1 GTTCTGGTGGCCATGC
81481298 TGCAAATTCT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 42 0.70
55 18 0.30
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (54 bp):
GTTCTGGTGGCCATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:81483951 original size:16 final size:16
Alignment explanation
Indices: 81483932--81483984 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
81483922 AAAGAAATTT
81483932 AAAAATAATATATTCA
1 AAAAATAATATATTCA
* *
81483948 AAAAATAATA-AGT-G
1 AAAAATAATATATTCA
*
81483962 AAAAATGATATATTCA
1 AAAAATAATATATTCA
81483978 AAAAATA
1 AAAAATA
81483985 TTATGTCAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
14 9 0.31
15 4 0.14
16 16 0.55
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (16 bp):
AAAAATAATATATTCA
Found at i:81488295 original size:9 final size:9
Alignment explanation
Indices: 81488279--81488321 Score: 77
Period size: 9 Copynumber: 4.8 Consensus size: 9
81488269 GGTATTTTTC
81488279 GGTAATTCG
1 GGTAATTCG
*
81488288 GTTAATTCG
1 GGTAATTCG
81488297 GGTAATTCG
1 GGTAATTCG
81488306 GGTAATTCG
1 GGTAATTCG
81488315 GGTAATT
1 GGTAATT
81488322 TTTAACCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.23, C:0.09, G:0.30, T:0.37
Consensus pattern (9 bp):
GGTAATTCG
Found at i:81490632 original size:22 final size:22
Alignment explanation
Indices: 81490590--81490633 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
81490580 TTCTTTTCGA
81490590 AATTCTATTTTTTTTAAATTTAG
1 AATTCTATTTTTTTT-AATTTAG
*
81490613 AATTCTGTGTTTTTTT-ATTTA
1 AATTCTAT-TTTTTTTAATTTA
81490634 TTTTAGAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 7 0.37
24 7 0.37
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.64
Consensus pattern (22 bp):
AATTCTATTTTTTTTAATTTAG
Found at i:81493536 original size:47 final size:47
Alignment explanation
Indices: 81493467--81493559 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
81493457 TTGCATCTTT
*
81493467 AGCTGAGAATGCATATGGATCATGATACTGTACGATGAGTTAGAGAA
1 AGCTGAGAATGCATATGGATCATGATACTGTACAATGAGTTAGAGAA
81493514 AGCTGAGAATGCATATGGATCATGATACTGTACAATGAGTTAGAGA
1 AGCTGAGAATGCATATGGATCATGATACTGTACAATGAGTTAGAGA
81493560 TGAATTGGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.26
Consensus pattern (47 bp):
AGCTGAGAATGCATATGGATCATGATACTGTACAATGAGTTAGAGAA
Found at i:81504811 original size:82 final size:83
Alignment explanation
Indices: 81504674--81504835 Score: 290
Period size: 82 Copynumber: 2.0 Consensus size: 83
81504664 CTGCCACTAC
* *
81504674 AAAAAAAATGCAGCCCAAGCTTTTTTTGAACATATTTCACCAAAACTAAGAATTTGAGAGAGAGA
1 AAAAAAAATGCAGCCCAAGCTTTTCTTGAACATATTTAACCAAAACTAAGAATTTGAGAGAGAGA
81504739 G-AGAGAGAATGAGTAGT
66 GAAGAGAGAATGAGTAGT
81504756 AAAAAAAATGCAGCCCAAGCTTTTCTTGAACATATTTAACCAAAACTAAGAATTTGAGAGAGAGA
1 AAAAAAAATGCAGCCCAAGCTTTTCTTGAACATATTTAACCAAAACTAAGAATTTGAGAGAGAGA
81504821 GAAAGAGAGAATGAG
66 G-AAGAGAGAATGAG
81504836 AAGTTGAATA
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
82 64 0.84
84 12 0.16
ACGTcount: A:0.46, C:0.12, G:0.20, T:0.22
Consensus pattern (83 bp):
AAAAAAAATGCAGCCCAAGCTTTTCTTGAACATATTTAACCAAAACTAAGAATTTGAGAGAGAGA
GAAGAGAGAATGAGTAGT
Found at i:81507937 original size:16 final size:16
Alignment explanation
Indices: 81507916--81507953 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
81507906 AATGTTGGTC
*
81507916 TTTTTT-TTACAGTTT
1 TTTTTTATTAAAGTTT
81507931 ATTTTTTATTAAAGTTT
1 -TTTTTTATTAAAGTTT
81507948 TTTTTT
1 TTTTTT
81507954 GTTGTTCGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (16 bp):
TTTTTTATTAAAGTTT
Found at i:81510160 original size:24 final size:24
Alignment explanation
Indices: 81510128--81510173 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
81510118 AGTTTAATAA
81510128 CAGAAAGCTCATAAGAGCTTAAAT
1 CAGAAAGCTCATAAGAGCTTAAAT
**
81510152 CAGAAAGCTCATGCGAGCTTAA
1 CAGAAAGCTCATAAGAGCTTAA
81510174 CGGGTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (24 bp):
CAGAAAGCTCATAAGAGCTTAAAT
Found at i:81510389 original size:24 final size:23
Alignment explanation
Indices: 81510353--81510407 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
81510343 AAAAACCATG
81510353 TATCAGAAAGCTCAAGAGAGCTTA
1 TATCAGAAAGCTCAAGAGAG-TTA
* * * *
81510377 TATCAGGATGCTCATGTGAGTTA
1 TATCAGAAAGCTCAAGAGAGTTA
81510400 TATCAGAA
1 TATCAGAA
81510408 CGCTTGCGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (23 bp):
TATCAGAAAGCTCAAGAGAGTTA
Found at i:81515344 original size:93 final size:93
Alignment explanation
Indices: 81515231--81515402 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81515221 CGCCCATAAG
* *
81515231 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81515296 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
81515324 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81515389 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81515403 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:81515399 original size:46 final size:46
Alignment explanation
Indices: 81515224--81515399 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81515214 TGTAACCCGC
* * *
81515224 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
81515270 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
81515320 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81515363 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81515400 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81522900 original size:93 final size:93
Alignment explanation
Indices: 81522787--81522958 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81522777 CGCCCATAAG
* *
81522787 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81522852 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
81522880 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81522945 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81522959 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Done.