Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 243 of 311
Found at i:81522955 original size:46 final size:46
Alignment explanation
Indices: 81522780--81522955 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81522770 TGTAACCCGC
* * *
81522780 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
81522826 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
81522876 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81522919 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81522956 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81524470 original size:44 final size:44
Alignment explanation
Indices: 81524395--81524482 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
81524385 ATTACATGTA
* * * *
81524395 TCGCATCCATAATGAACTCGGACCAATTCAACGAGTTCGGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGC
*
81524439 TCGCATCCATAATGAACTCAGACTAACTCAACGAGCTCAGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGC
81524483 CTCATATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGC
Found at i:81525234 original size:20 final size:18
Alignment explanation
Indices: 81525197--81525247 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
81525187 CTATAGCAAC
81525197 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
81525214 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
81525234 TTACAACTTTACAA
1 TCACAA-TTTACAA
81525248 AATAGCCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:81527929 original size:45 final size:45
Alignment explanation
Indices: 81527872--81528020 Score: 271
Period size: 45 Copynumber: 3.3 Consensus size: 45
81527862 TCTAATTTAT
81527872 ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
1 ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
81527917 ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
1 ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
* * *
81527962 ATTATAAAGTTTGTTCCAAGTTTCTTTCAACACATGTCATTCAAA
1 ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
81528007 ATTACAAAGTTTGT
1 ATTACAAAGTTTGT
81528021 ATTTTTCCAT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 100 1.00
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (45 bp):
ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
Found at i:81531285 original size:49 final size:49
Alignment explanation
Indices: 81531221--81531545 Score: 398
Period size: 49 Copynumber: 6.5 Consensus size: 49
81531211 CTGGTACGCA
81531221 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
* * ** * *
81531270 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCAGGTACACG
* * * * *
81531320 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCAGGTACACG
** *
81531371 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
* * * * * ** *
81531420 TAGTAGCCTGCACTTAGTACTACACAAGTGATCACAGTTTTCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCAGGTACACG
*
81531471 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
81531520 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
81531546 CGTGACCTCA
Statistics
Matches: 232, Mismatches: 39, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
49 106 0.46
50 50 0.22
51 76 0.33
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
Found at i:81531445 original size:100 final size:99
Alignment explanation
Indices: 81531209--81531550 Score: 488
Period size: 100 Copynumber: 3.4 Consensus size: 99
81531199 AGCCGAAGCT
* * * * * * *
81531209 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TTATCAGGTACACGTAG
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAGTTATCAGGTACGCATAG
* * *
81531273 TAGCCTGCACTTAGTACTACACACGTGACCTAACC
66 TAGCCTGCACTTAGTACTACACATGCGACC-AACA
*
81531308 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-AAGTTATCAGGTACGCATA
81531373 GTAGCCTGCACTTAGTACTACACATGCGACCAACA
65 GTAGCCTGCACTTAGTACTACACATGCGACCAACA
* * * *
81531408 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAAGTGATCACAGTTTTCGGGTATGCATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCA-AGTTATCAGGTACGCATA
**
81531473 GTAGCCTGCACTTAGTACTACACATGCGACCAATT
65 GTAGCCTGCACTTAGTACTACACATGCGACCAACA
*
81531508 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
81531551 CCTCACAATA
Statistics
Matches: 220, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
99 40 0.18
100 137 0.62
101 43 0.20
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAGTTATCAGGTACGCATAG
TAGCCTGCACTTAGTACTACACATGCGACCAACA
Found at i:81533438 original size:11 final size:11
Alignment explanation
Indices: 81533422--81533452 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
81533412 GTAATGTTAA
81533422 AATATATACAT
1 AATATATACAT
81533433 AATATATACAT
1 AATATATACAT
81533444 ATATATATA
1 A-ATATATA
81533453 AAATAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATATACAT
Found at i:81533850 original size:24 final size:24
Alignment explanation
Indices: 81533740--81533852 Score: 72
Period size: 26 Copynumber: 4.7 Consensus size: 24
81533730 AACTAATGGT
*
81533740 ATTAAAATATATACATAATAATAGT
1 ATTAAAATATATACATAAT-ATAGA
* * *
81533765 ATTACAAA-GTGTAC---ACATAGA
1 ATTA-AAATATATACATAATATAGA
* *
81533786 ATTAAAATATATACATAATATGGC
1 ATTAAAATATATACATAATATAGA
* * *
81533810 GTTGAAAAATACATACATAATATAGT
1 ATT--AAAATATATACATAATATAGA
*
81533836 ATTAAAATATTTACATA
1 ATTAAAATATATACATA
81533853 GCATTTACAT
Statistics
Matches: 65, Mismatches: 16, Indels: 15
0.68 0.17 0.16
Matches are distributed among these distances:
20 3 0.05
21 12 0.18
22 1 0.02
24 18 0.28
25 8 0.12
26 23 0.35
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (24 bp):
ATTAAAATATATACATAATATAGA
Found at i:81533917 original size:9 final size:10
Alignment explanation
Indices: 81533905--81533962 Score: 52
Period size: 9 Copynumber: 6.0 Consensus size: 10
81533895 ATAACATTAT
81533905 ATAAAT-ATA
1 ATAAATAATA
81533914 ATAAATAATA
1 ATAAATAATA
81533924 AT-AATAATA
1 ATAAATAATA
*
81533933 AT-AACAATA
1 ATAAATAATA
81533942 ATAGCAATAATA
1 ATA--AATAATA
*
81533954 GTAAA-AATA
1 ATAAATAATA
81533963 CAAAAGAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
9 27 0.64
10 7 0.17
12 8 0.19
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (10 bp):
ATAAATAATA
Found at i:81533953 original size:3 final size:3
Alignment explanation
Indices: 81533911--81533944 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
81533901 TTATATAAAT
*
81533911 ATA ATAA ATA ATA ATA ATA ATA ATA ACA ATA ATA
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
81533945 GCAATAATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:81534123 original size:3 final size:3
Alignment explanation
Indices: 81534088--81534208 Score: 52
Period size: 3 Copynumber: 39.0 Consensus size: 3
81534078 ATATACATAT
* * * *
81534088 ATA ATA A-A ATA TATA CTA ATA TTT ATAA ATA ATA ATA GTA A-A TATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA -ATA
* * * * *
81534134 ATA ATA ATA ATA TTA AGT- ATA GT- ATAA ATA ATA TGTA CATA ACA GTA
1 ATA ATA ATA ATA ATA A-TA ATA ATA AT-A ATA ATA -ATA -ATA ATA ATA
*
81534181 ATA ATA AGTA ACA ATA ATA ATA ATA ATA
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA
81534209 TAGAAATTCA
Statistics
Matches: 86, Mismatches: 21, Indels: 22
0.67 0.16 0.17
Matches are distributed among these distances:
2 5 0.06
3 65 0.76
4 16 0.19
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:81534198 original size:16 final size:16
Alignment explanation
Indices: 81534173--81534203 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81534163 AATATGTACA
*
81534173 TAACAGTAATAATAAG
1 TAACAATAATAATAAG
81534189 TAACAATAATAATAA
1 TAACAATAATAATAA
81534204 TAATATAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.26
Consensus pattern (16 bp):
TAACAATAATAATAAG
Found at i:81534362 original size:17 final size:17
Alignment explanation
Indices: 81534326--81534364 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
81534316 ACACTAATAT
*
81534326 AATAATAATGATAATCA
1 AATAATAATGAAAATCA
* *
81534343 AATAATAATTAAAATGA
1 AATAATAATGAAAATCA
81534360 AATAA
1 AATAA
81534365 AATAACGAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (17 bp):
AATAATAATGAAAATCA
Found at i:81536108 original size:21 final size:21
Alignment explanation
Indices: 81536075--81536118 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
81536065 TCTGATATCC
*
81536075 TCGATCAGTTCCACTGCAACT
1 TCGATCAGCTCCACTGCAACT
* * *
81536096 TCGATTAGCTCCATTGTAACT
1 TCGATCAGCTCCACTGCAACT
81536117 TC
1 TC
81536119 AGGGCTCTGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.34
Consensus pattern (21 bp):
TCGATCAGCTCCACTGCAACT
Found at i:81536504 original size:89 final size:88
Alignment explanation
Indices: 81536275--81537049 Score: 574
Period size: 87 Copynumber: 8.9 Consensus size: 88
81536265 AACAGACATT
* * * * **
81536275 AAAAACAGAAATTGAATATAGCTTAGCACGTGAGCCAAGGCTCAACTCATTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAG-ACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * *
81536340 TTGGTTTTTG-AAACT-TAATTTG
65 TTGATTTTTGAAAAATATAAATTG
* ** * *
81536362 AAAAGCAGATTTTGAAAATACCTC-GACATCTGACCCAAGGCTCAACTCACCTCTCGCAATATAA
1 AAAAACAGAAATTGAAAATACCTCAGAC--GTGACCCAAGGCTCAACTCACCTCTCGCAATATGA
81536426 GTTGATTTTTGAAAAATATAAATTG
64 GTTGATTTTTGAAAAATATAAATTG
*
81536451 AAAAAAACAGAAATTGAAAATACCTCAG-CGTG-CCCTAAGGCTCAACTCACCTCTCGTAATATG
1 --AAAAACAGAAATTGAAAATACCTCAGACGTGACCC-AAGGCTCAACTCACCTCTCGCAATATG
* *
81536514 AGTTGATTTTTGAAAAACATAACTTG
63 AGTTGATTTTTGAAAAATATAAATTG
* ** *
81536540 AAAAACAGAAATTGAAAATACCTCAG-CGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGT
* * **
81536604 TGATTTTTGACAAACAGGAATTG
66 TGATTTTTGAAAAATATAAATTG
* ** * * *** * * * * * * *
81536627 ---CA-ATTAACTCAGCGTGCC-CCGA-G-G-CTCAA--CTCACCTCTCGCAACAT-G-AGT-TG
1 AAAAACAGAAATTGAAAATACCTCAGACGTGACCCAAGGCTCAACTCAC-C-TC-TCGCAATATG
* ** *
81536679 A-TT-TTTTTGAAAAAT-ATAAATTG
63 AGTTGATTTTTGAAAAATATAAATTG
* * *
81536702 AAAGAACAGAAATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTAACCTCTCGCAATATGA
1 AAA-AACAGAAATTGAAAATACCTCAG-ACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGA
* ** *
81536767 GTTGATTTTTG-AAAACAGGATTTG
64 GTTGATTTTTGAAAAATATAAATTG
* * * * * *
81536791 CAAAAACAG-ATTCTGAAAATACCTCGGCATGTAAACCGAGGCTCAACTCACCTCTCGCAATATG
1 -AAAAACAGAAAT-TGAAAATACCTCAG-ACGTGACCCAAGGCTCAACTCACCTCTCGCAATATG
81536855 AGTTGATTTTTTTGAAAAATATAAATTG
63 AGTTGA--TTTTTGAAAAATATAAATTG
* * ** * *
81536883 AAAGAACAGAAATTGAAAATACATCAG-CGTGTCCTGAGGCTCAATTCACTTCTCGCAATATGAG
1 AAA-AACAGAAATTGAAAATACCTCAGACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAG
* *
81536947 TTGCTTTTTGAAAAATATAAATTAA
65 TTGATTTTTGAAAAATATAAATT-G
* * * **
81536972 AAAAACAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCATTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAG-ACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAG
81537037 TTGATTTTTGAAA
65 TTGATTTTTGAAA
81537050 CATAAATTGA
Statistics
Matches: 541, Mismatches: 106, Indels: 79
0.75 0.15 0.11
Matches are distributed among these distances:
75 6 0.01
76 7 0.01
77 2 0.00
78 11 0.02
79 4 0.01
80 12 0.02
81 4 0.01
82 4 0.01
83 9 0.02
84 3 0.01
85 7 0.01
86 4 0.01
87 146 0.27
88 57 0.11
89 126 0.23
90 79 0.15
91 31 0.06
92 27 0.05
93 2 0.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCAGACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAAATATAAATTG
Found at i:81536542 original size:14 final size:14
Alignment explanation
Indices: 81536523--81536557 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
81536513 GAGTTGATTT
* *
81536523 TTGAAAAACATAAC
1 TTGAAAAACAGAAA
81536537 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
81536551 TTGAAAA
1 TTGAAAA
81536558 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:81536661 original size:73 final size:73
Alignment explanation
Indices: 81536537--81536704 Score: 219
Period size: 73 Copynumber: 2.3 Consensus size: 73
81536527 AAAACATAAC
* * * * *
81536537 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATAACTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAACATGA
81536602 GTTGATTT
66 GTTGATTT
* * * *
81536610 TTGACAAACAGGAATTGCAATTAACTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAACATGA
1 TTGAAAAACAGAAATTGAAAATAACTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAACATGA
81536675 GTTGATTTTT
66 GTTGA--TTT
* *
81536685 TTGAAAAATATAAATTGAAA
1 TTGAAAAACAGAAATTGAAA
81536705 GAACAGAAAT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
73 61 0.77
75 18 0.23
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATAACTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAACATGA
GTTGATTT
Found at i:81536866 original size:90 final size:90
Alignment explanation
Indices: 81536645--81537049 Score: 525
Period size: 90 Copynumber: 4.5 Consensus size: 90
81536635 TCAGCGTGCC
*
81536645 CCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAACA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATATAAATTGAAAGAACA
81536710 GAAATTGAAAATACCTCAGCATGTGAG
64 GAAATTGAAAATACCTCAGCATGTGAG
* * * ** *
81536737 CCAAGGCTCAACTAACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGGATTTGCAAA-AACAG
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTG-AAAGAACAG
* * * *
81536800 -ATTCTGAAAATACCTCGGCATGTAAA
65 AAAT-TGAAAATACCTCAGCATGTGAG
81536826 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAACA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATATAAATTGAAAGAACA
* *
81536891 GAAATTGAAAATACATCAGC--GTG-T
64 GAAATTGAAAATACCTCAGCATGTGAG
* * * * *
81536915 CCTGAGGCTCAATTCACTTCTCGCAATATGAGTTGCTTTTTGAAAAATATAAATTAAAAAAACAG
1 CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAGAACAG
81536980 AAATTGAAAATACCTCAGCATGTGAG
65 AAATTGAAAATACCTCAGCATGTGAG
**
81537006 CCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
81537050 CATAAATTGA
Statistics
Matches: 270, Mismatches: 32, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
88 47 0.17
89 68 0.25
90 83 0.31
91 11 0.04
92 59 0.22
93 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (90 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAGAACAGA
AATTGAAAATACCTCAGCATGTGAG
Found at i:81537148 original size:14 final size:15
Alignment explanation
Indices: 81537116--81537148 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
81537106 TTGATTTCTG
81537116 AAAACAGAAATTTGA
1 AAAACAGAAATTTGA
81537131 AAAACAGAAA-TTGA
1 AAAACAGAAATTTGA
81537145 AAAA
1 AAAA
81537149 AATAGAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.67, C:0.06, G:0.12, T:0.15
Consensus pattern (15 bp):
AAAACAGAAATTTGA
Found at i:81537155 original size:16 final size:16
Alignment explanation
Indices: 81537116--81537160 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
81537106 TTGATTTCTG
81537116 AAAACAGAAATTTG--A
1 AAAACAGAAA-TTGAAA
81537131 AAAACAGAAATTGAAA
1 AAAACAGAAATTGAAA
*
81537147 AAAATAGAAATTGA
1 AAAACAGAAATTGA
81537161 GATTACCTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 3 0.11
15 10 0.37
16 14 0.52
ACGTcount: A:0.64, C:0.04, G:0.13, T:0.18
Consensus pattern (16 bp):
AAAACAGAAATTGAAA
Found at i:81538055 original size:44 final size:43
Alignment explanation
Indices: 81538001--81538105 Score: 117
Period size: 43 Copynumber: 2.4 Consensus size: 43
81537991 TCATTAGAAT
* * *
81538001 GCCC-TTTCGGGTTTTCA-TTCTAAT-CTTTTGTGTTAATTAAGAC
1 GCCCTTTTCGGGTTTTCACCT-TAATCCTTTT-TATT-ATCAAGAC
* *
81538044 GCCCTTTTCGGGTCTTCACCTTGATCCTTTTTATTATCAAGAC
1 GCCCTTTTCGGGTTTTCACCTTAATCCTTTTTATTATCAAGAC
81538087 GCCCTTTTCGGGTTTTCAC
1 GCCCTTTTCGGGTTTTCAC
81538106 ATTGATCCCC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
43 29 0.55
44 18 0.34
45 6 0.11
ACGTcount: A:0.15, C:0.25, G:0.16, T:0.44
Consensus pattern (43 bp):
GCCCTTTTCGGGTTTTCACCTTAATCCTTTTTATTATCAAGAC
Found at i:81549309 original size:159 final size:159
Alignment explanation
Indices: 81549063--81549380 Score: 611
Period size: 159 Copynumber: 2.0 Consensus size: 159
81549053 ATAGCGAGAT
81549063 GATATAAAATGGGCGGGAAACAAAATAAAATAGTTATAAATACATCGAAAGCACATAATAAAAAC
1 GATATAAAATGGGCGGGAAACAAAATAAAATAGTTATAAATACATCGAAAGCACATAATAAAAAC
81549128 GACAATAATATTAGAAAACAATGACAATGCGTGCGATATATTAAACGTAATAATAATATCAAACA
66 GACAATAATATTAGAAAACAATGACAATGCGTGCGATATATTAAACGTAATAATAATATCAAACA
81549193 CGAAATAAAAACAATGAATATATATATAC
131 CGAAATAAAAACAATGAATATATATATAC
81549222 GATATAAAATGGGCGGGAAACAAAATAAAATAGTTATAAATACATCGAAAGCACATAATAAAAAC
1 GATATAAAATGGGCGGGAAACAAAATAAAATAGTTATAAATACATCGAAAGCACATAATAAAAAC
*
81549287 GACAATAATATTA-AAAGACAATGACAATGCGTGCGATATATTAAACGTAATAATAGTATCAAAC
66 GACAATAATATTAGAAA-ACAATGACAATGCGTGCGATATATTAAACGTAATAATAATATCAAAC
81549351 ACGAAATAAAAACAATGAATATATATATAC
130 ACGAAATAAAAACAATGAATATATATATAC
81549381 ATAATAAGGA
Statistics
Matches: 157, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
158 3 0.02
159 154 0.98
ACGTcount: A:0.54, C:0.11, G:0.13, T:0.22
Consensus pattern (159 bp):
GATATAAAATGGGCGGGAAACAAAATAAAATAGTTATAAATACATCGAAAGCACATAATAAAAAC
GACAATAATATTAGAAAACAATGACAATGCGTGCGATATATTAAACGTAATAATAATATCAAACA
CGAAATAAAAACAATGAATATATATATAC
Found at i:81549522 original size:11 final size:11
Alignment explanation
Indices: 81549506--81549536 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
81549496 GTAATGTTAA
81549506 AATATATACAT
1 AATATATACAT
81549517 AATATATACAT
1 AATATATACAT
81549528 ATATATATA
1 A-ATATATA
81549537 AAATAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATATACAT
Found at i:81550202 original size:3 final size:3
Alignment explanation
Indices: 81550194--81550308 Score: 83
Period size: 3 Copynumber: 37.3 Consensus size: 3
81550184 AATATTTATA
* *
81550194 AAT AAT AAT AGT AA- ATAT AAT AAT AAT AAT AAT AAT ATT AAGT -AT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
* * * * * *
81550239 AGT -AT AAAG AAT ATGT ACAT AAC AGT AAT AAT AAT AAGT AAC AAT AAT
1 AAT AAT -AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
81550287 AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
81550309 TAGAAATTCA
Statistics
Matches: 87, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
2 3 0.03
3 74 0.85
4 10 0.11
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:81550460 original size:17 final size:17
Alignment explanation
Indices: 81550424--81550462 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
81550414 ACACTAATAT
*
81550424 AATAATAATGATAATCA
1 AATAATAATGAAAATCA
* *
81550441 AATAATAATTAAAATGA
1 AATAATAATGAAAATCA
81550458 AATAA
1 AATAA
81550463 AATAACGAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (17 bp):
AATAATAATGAAAATCA
Found at i:81550939 original size:11 final size:11
Alignment explanation
Indices: 81550923--81550956 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
81550913 AGAAAAAAAA
81550923 GAAGAGAGAAG
1 GAAGAGAGAAG
81550934 GAAGAGAGAAG
1 GAAGAGAGAAG
* *
81550945 GGAGATAGAAG
1 GAAGAGAGAAG
81550956 G
1 G
81550957 GGGGAAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.47, T:0.03
Consensus pattern (11 bp):
GAAGAGAGAAG
Found at i:81556653 original size:29 final size:29
Alignment explanation
Indices: 81556615--81556731 Score: 112
Period size: 29 Copynumber: 4.0 Consensus size: 29
81556605 GTTTTAAAGC
* *
81556615 TTGGGAATTTTGCTTTAGGATTTTTTATTT
1 TTGGG-ATTTTGATTTAGGGTTTTTTATTT
81556645 TTGGGATTTTGGA-TTAGGGTTTTTTATTT
1 TTGGGATTTT-GATTTAGGGTTTTTTATTT
** *
81556674 TTGATATTTTTATTTAGGGTTTTTTATTT
1 TTGGGATTTTGATTTAGGGTTTTTTATTT
* * * *
81556703 TTGAGATATT-AGTTTAGAGTTTTTGATTT
1 TTGGGATTTTGA-TTTAGGGTTTTTTATTT
81556732 GATCACTACT
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
28 2 0.03
29 67 0.89
30 6 0.08
ACGTcount: A:0.18, C:0.01, G:0.21, T:0.61
Consensus pattern (29 bp):
TTGGGATTTTGATTTAGGGTTTTTTATTT
Found at i:81556697 original size:14 final size:14
Alignment explanation
Indices: 81556658--81556702 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
81556648 GGATTTTGGA
81556658 TTAGGGTTTTTTAT
1 TTAGGGTTTTTTAT
** *
81556672 TTTTGATATTTTTAT
1 TTAGGGT-TTTTTAT
81556687 TTAGGGTTTTTTAT
1 TTAGGGTTTTTTAT
81556701 TT
1 TT
81556703 TTGAGATATT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.69
Consensus pattern (14 bp):
TTAGGGTTTTTTAT
Found at i:81560882 original size:12 final size:12
Alignment explanation
Indices: 81560865--81560889 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81560855 GTGGTGAGCT
81560865 GACAAGTACTCA
1 GACAAGTACTCA
81560877 GACAAGTACTCA
1 GACAAGTACTCA
81560889 G
1 G
81560890 TCCCATTGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.16
Consensus pattern (12 bp):
GACAAGTACTCA
Found at i:81563993 original size:10 final size:9
Alignment explanation
Indices: 81563966--81564201 Score: 110
Period size: 10 Copynumber: 25.0 Consensus size: 9
81563956 TAAATGACTT
81563966 TTTTTAT-A
1 TTTTTATAA
81563974 TTTTTA-AA
1 TTTTTATAA
81563982 TTTTTAATAA
1 TTTTT-ATAA
81563992 TTTTTATAA
1 TTTTTATAA
* *
81564001 TATATTAGAA
1 T-TTTTATAA
81564011 TTTTT-TAATA
1 TTTTTAT-A-A
81564021 TTTTTATAA
1 TTTTTATAA
81564030 GTTTTTATGAA
1 -TTTTTAT-AA
*
81564041 TTTTTATATG
1 TTTTTATA-A
81564051 TTTTTATAAA
1 TTTTTAT-AA
* *
81564061 ATTTTAAATA
1 TTTTTATA-A
81564071 TATTTTATTAA
1 T-TTTTA-TAA
81564082 TTTATTAT--
1 TTT-TTATAA
81564090 TTTTTA-AA
1 TTTTTATAA
*
81564098 TATTTATAA
1 TTTTTATAA
* *
81564107 GTTTATAACAA
1 -TTT-TTATAA
*
81564118 TTTTAAT-A
1 TTTTTATAA
81564126 TATTTTA-AA
1 T-TTTTATAA
* *
81564135 TACTTAATAA
1 T-TTTTATAA
81564145 TTTTTATATA
1 TTTTTATA-A
*
81564155 TATTTATAA
1 TTTTTATAA
* *
81564164 TTTTTCTTA
1 TTTTTATAA
*
81564173 TTTTTAATGA
1 TTTTT-ATAA
81564183 TTTTTATAA
1 TTTTTATAA
81564192 CTTTTTATAA
1 -TTTTTATAA
81564202 CCATAAACTA
Statistics
Matches: 175, Mismatches: 27, Indels: 50
0.69 0.11 0.20
Matches are distributed among these distances:
7 3 0.02
8 22 0.13
9 48 0.27
10 83 0.47
11 18 0.10
12 1 0.01
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.60
Consensus pattern (9 bp):
TTTTTATAA
Found at i:81564016 original size:38 final size:37
Alignment explanation
Indices: 81563974--81564191 Score: 121
Period size: 38 Copynumber: 5.7 Consensus size: 37
81563964 TTTTTTTATA
81563974 TTTTTAAATTTTTAATAATTTTTATAATATATTAGAAT
1 TTTTTAAATTTTTAATAATTTTTATAATATATTA-AAT
* *
81564012 TTTTTAATATTTTT-ATAAGTTTTTATGAAT-TTTTATATGT
1 TTTTTAA-ATTTTTAATAA-TTTTTAT-AATATATTA-A-AT
* *
81564052 TTTTATAAAATTTTAA-ATATATTTTATTAATTTATT--AT
1 TTTT-TAAATTTTTAATA-AT-TTTTA-TAATATATTAAAT
* * * *
81564090 TTTTTAAATATTT-ATAA-GTTTATAACAATTTTAATAT
1 TTTTTAAATTTTTAATAATTTTTATAA-TATATTAA-AT
* **
81564127 ATTTTAAATACTTAATAATTTTTAT-ATATATTTATAAT
1 TTTTTAAATTTTTAATAATTTTTATAATATA-TTA-AAT
* *
81564165 TTTTCT-TATTTTTAATGATTTTTATAA
1 TTTT-TAAATTTTTAATAATTTTTATAA
81564192 CTTTTTATAA
Statistics
Matches: 137, Mismatches: 22, Indels: 41
0.69 0.11 0.20
Matches are distributed among these distances:
33 3 0.02
34 7 0.05
36 2 0.01
37 23 0.17
38 44 0.32
39 26 0.19
40 15 0.11
41 13 0.09
42 4 0.03
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (37 bp):
TTTTTAAATTTTTAATAATTTTTATAATATATTAAAT
Found at i:81564034 original size:20 final size:19
Alignment explanation
Indices: 81563966--81564201 Score: 109
Period size: 19 Copynumber: 12.5 Consensus size: 19
81563956 TAAATGACTT
81563966 TTTTTAT-A-TTTT-TAAA
1 TTTTTATAATTTTTATAAA
81563982 TTTTTAATAATTTTTAT-AA
1 TTTTT-ATAATTTTTATAAA
* *
81564001 TATATTAGAATTTTT-TAATA
1 T-TTTTATAATTTTTATAA-A
*
81564021 TTTTTATAAGTTTTTATGAA
1 TTTTTATAA-TTTTTATAAA
*
81564041 TTTTTATATGTTTTTATAAA
1 TTTTTATA-ATTTTTATAAA
* * *
81564061 ATTTTAAATATATTTTATTAA
1 TTTTTATA-AT-TTTTATAAA
*
81564082 --TTTATTATTTTT-TAAA
1 TTTTTATAATTTTTATAAA
* *
81564098 TATTTATAA-GTTTATAACA
1 TTTTTATAATTTTTATAA-A
* *
81564117 ATTTTA-ATATATTT-TAAA
1 TTTTTATA-ATTTTTATAAA
* * *
81564135 TACTTAATAATTTTTATATA
1 T-TTTTATAATTTTTATAAA
* * *
81564155 TATTTATAATTTTTCT-TA
1 TTTTTATAATTTTTATAAA
* *
81564173 TTTTTAATGATTTTTATAAC
1 TTTTT-ATAATTTTTATAAA
81564193 TTTTTATAA
1 TTTTTATAA
81564202 CCATAAACTA
Statistics
Matches: 165, Mismatches: 33, Indels: 41
0.69 0.14 0.17
Matches are distributed among these distances:
16 8 0.05
17 9 0.05
18 21 0.13
19 67 0.41
20 50 0.30
21 10 0.06
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTTTATAATTTTTATAAA
Found at i:81564132 original size:29 final size:28
Alignment explanation
Indices: 81564053--81564132 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
81564043 TTTATATGTT
81564053 TTTATAAAATTTTAAATATATTTTATTAA
1 TTTATAAAATTTT-AATATATTTTATTAA
* **
81564082 TTTATTATTTTTTAA-ATA-TTTA-TAA
1 TTTATAAAATTTTAATATATTTTATTAA
81564107 GTTTATAACAATTTTAATATATTTTA
1 -TTTATAA-AATTTTAATATATTTTA
81564133 AATACTTAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
25 3 0.07
26 10 0.24
27 9 0.22
28 5 0.12
29 14 0.34
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (28 bp):
TTTATAAAATTTTAATATATTTTATTAA
Found at i:81564149 original size:55 final size:56
Alignment explanation
Indices: 81564053--81564163 Score: 140
Period size: 55 Copynumber: 2.0 Consensus size: 56
81564043 TTTATATGTT
* *
81564053 TTTATAAAATTTTAAATATATTTTATTAATTT-ATTATTTTT-TAAATATTTATAAG
1 TTTATAAAATTTTAAATATATTTTA-TAATTTAATAATTTTTATATATATTTATAAG
81564108 TTTATAACAATTTT-AATATATTTTA-AATACTTAATAATTTTTATATATATTTATAA
1 TTTATAA-AATTTTAAATATATTTTATAAT--TTAATAATTTTTATATATATTTATAA
81564164 TTTTTCTTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
53 3 0.06
55 20 0.41
56 14 0.29
57 12 0.24
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (56 bp):
TTTATAAAATTTTAAATATATTTTATAATTTAATAATTTTTATATATATTTATAAG
Found at i:81566982 original size:19 final size:19
Alignment explanation
Indices: 81566944--81567005 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
81566934 AGATTACAAG
*
81566944 ATCATATCTTCAATATTGCAT
1 ATCATATC-T-AAGATTGCAT
81566965 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
81566984 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
81567003 ATC
1 ATC
81567006 CTTAAAGATT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 31 0.77
20 1 0.03
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:81577618 original size:17 final size:18
Alignment explanation
Indices: 81577596--81577634 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
81577586 TACTAAAATG
*
81577596 TTTTAT-TAAACGACAGT
1 TTTTATGTAAACAACAGT
*
81577613 TTTTATGTAAACAAGAGT
1 TTTTATGTAAACAACAGT
81577631 TTTT
1 TTTT
81577635 CTTACAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46
Consensus pattern (18 bp):
TTTTATGTAAACAACAGT
Found at i:81579943 original size:40 final size:40
Alignment explanation
Indices: 81579888--81579969 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
81579878 TTCCCGAAAT
*
81579888 GAATAAGGTCTTGCATTTGTTTCAGATGGAATTTAGCTCA
1 GAATAAGGTCTTGCATTTGTTGCAGATGGAATTTAGCTCA
81579928 GAATAAGGTCTTGCATTTGTTGCAGATGGAATTTAGCTCA
1 GAATAAGGTCTTGCATTTGTTGCAGATGGAATTTAGCTCA
81579968 GA
1 GA
81579970 CGATTAATCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.35
Consensus pattern (40 bp):
GAATAAGGTCTTGCATTTGTTGCAGATGGAATTTAGCTCA
Found at i:81597577 original size:10 final size:10
Alignment explanation
Indices: 81597547--81597598 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
81597537 TTAGAAAAAA
*
81597547 TTAAATTTCT
1 TTAAATTTTT
* *
81597557 TTATATATTT
1 TTAAATTTTT
*
81597567 TTAGATTTTT
1 TTAAATTTTT
*
81597577 TAAAATTTTT
1 TTAAATTTTT
81597587 TTATAATTTTT
1 TTA-AATTTTT
81597598 T
1 T
81597599 AAAAAATGAA
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
10 25 0.76
11 8 0.24
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (10 bp):
TTAAATTTTT
Found at i:81597646 original size:19 final size:21
Alignment explanation
Indices: 81597610--81597652 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
81597600 AAAAATGAAA
*
81597610 TTTGAATTTTTTATAAA-TAT
1 TTTGAATTTTTGATAAATTAT
81597630 TTTGAATTTTTGA-AAATTAT
1 TTTGAATTTTTGATAAATTAT
81597650 TTT
1 TTT
81597653 TTTTGTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTGAATTTTTGATAAATTAT
Found at i:81599134 original size:37 final size:37
Alignment explanation
Indices: 81599084--81599158 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
81599074 TAGTAGGAAC
* *
81599084 ACCAAAATGAAACTGTAGAGAATTTCTTTGAGGTTGT
1 ACCAAAATGAAACTGTACAGAATTTCTTTAAGGTTGT
81599121 ACCAAAATGAAACTGTACAGAATTTCTTTAAGGTTGT
1 ACCAAAATGAAACTGTACAGAATTTCTTTAAGGTTGT
81599158 A
1 A
81599159 GTTAGAAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (37 bp):
ACCAAAATGAAACTGTACAGAATTTCTTTAAGGTTGT
Found at i:81608160 original size:92 final size:92
Alignment explanation
Indices: 81608049--81608218 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
81608039 GCCCCTAAGT
* *
81608049 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81608114 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
* *
81608141 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81608206 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81608219 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:81608215 original size:46 final size:46
Alignment explanation
Indices: 81608044--81608215 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
81608034 AACCCGCCCC
* * * *
81608044 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
81608090 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT---
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
81608137 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
81608182 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81608216 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
45 2 0.02
46 90 0.85
47 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:81608234 original size:46 final size:46
Alignment explanation
Indices: 81608046--81608234 Score: 144
Period size: 46 Copynumber: 4.1 Consensus size: 46
81608036 CCCGCCCCTA
* ** * *
81608046 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
81608091 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * *
81608139 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCT
81608184 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
81608230 AGTGA
1 AGTGA
81608235 CATGTCACTT
Statistics
Matches: 115, Mismatches: 12, Indels: 32
0.72 0.08 0.20
Matches are distributed among these distances:
44 8 0.07
45 3 0.03
46 95 0.83
47 1 0.01
48 3 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:81615648 original size:45 final size:45
Alignment explanation
Indices: 81615584--81615752 Score: 218
Period size: 45 Copynumber: 3.7 Consensus size: 45
81615574 TAACCGCCCC
* *
81615584 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
* *
81615629 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--TCCA
* * *
81615675 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCA
81615720 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
81615753 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 65 0.61
46 33 0.31
47 3 0.03
48 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
Found at i:81615743 original size:91 final size:90
Alignment explanation
Indices: 81615589--81615756 Score: 300
Period size: 91 Copynumber: 1.9 Consensus size: 90
81615579 GCCCCTAAGT
*
81615589 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
81615654 GAGTTCGGATGCCTAGTTACATCAC
66 GAGTTCGGATGCCTAGTTACATCAC
* *
81615679 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81615744 CGAGTTCGGATGC
65 CGAGTTCGGATGC
81615757 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
90 27 0.36
91 47 0.64
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (90 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCAC
Found at i:81615772 original size:46 final size:45
Alignment explanation
Indices: 81615586--81615772 Score: 154
Period size: 45 Copynumber: 4.1 Consensus size: 45
81615576 ACCGCCCCTA
* * * * * *
81615586 AGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCATCT
81615631 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
81615677 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
81615722 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
81615768 AGTGA
1 AGTGA
81615773 CATGTCACTT
Statistics
Matches: 116, Mismatches: 11, Indels: 29
0.74 0.07 0.19
Matches are distributed among these distances:
43 1 0.01
44 11 0.09
45 63 0.54
46 37 0.32
47 3 0.03
48 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:81619065 original size:45 final size:47
Alignment explanation
Indices: 81619001--81619089 Score: 137
Period size: 46 Copynumber: 1.9 Consensus size: 47
81618991 CATGAATTAT
*
81619001 TCCTGTCTCACAATGCCATATAT-TAATATGGAATTACATGGCTCAA
1 TCCTGTCTCACAAAGCCATATATCTAATATGGAATTACATGGCTCAA
* *
81619047 TCCTGTCTC-CAAAGCCATATTTCTAATATGGACTTACATGGCT
1 TCCTGTCTCACAAAGCCATATATCTAATATGGAATTACATGGCT
81619090 ATTTCTGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
45 11 0.28
46 28 0.72
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (47 bp):
TCCTGTCTCACAAAGCCATATATCTAATATGGAATTACATGGCTCAA
Found at i:81621885 original size:16 final size:18
Alignment explanation
Indices: 81621849--81621890 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
81621839 AGAAGGGAGG
* *
81621849 AAAACAAAATGAG-AAAC
1 AAAAGAAAATGAGAAAAA
81621866 AAAAGAAAATG-GAAAAA
1 AAAAGAAAATGAGAAAAA
81621883 AAAAGAAA
1 AAAAGAAA
81621891 GTTAAAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 1 0.05
17 21 0.95
ACGTcount: A:0.76, C:0.05, G:0.14, T:0.05
Consensus pattern (18 bp):
AAAAGAAAATGAGAAAAA
Found at i:81623944 original size:46 final size:44
Alignment explanation
Indices: 81623839--81623946 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
81623829 TGTCTTTGAC
** * * *
81623839 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
* *
81623883 ATGGAATTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
81623929 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
81623947 TTTCTGTTCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 32 0.59
46 22 0.41
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:81625758 original size:14 final size:14
Alignment explanation
Indices: 81625732--81625765 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
81625722 CTTAGTAAGC
81625732 CATATACAAATAAA
1 CATATACAAATAAA
81625746 CATA-ACAATATAAA
1 CATATACAA-ATAAA
81625760 CATATA
1 CATATA
81625766 AGCATCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 13 0.72
15 1 0.06
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.24
Consensus pattern (14 bp):
CATATACAAATAAA
Found at i:81628194 original size:74 final size:71
Alignment explanation
Indices: 81628105--81628256 Score: 187
Period size: 72 Copynumber: 2.1 Consensus size: 71
81628095 AAAATTTGGG
** * * *
81628105 GTTTTGGGGGAAGTAAAAGTTTTGTGGGAAAAAGTAAAAGGAAAAAGGTTTTGGGGATTTGGAGG
1 GTTTTGGGGGAAGTAAAAGTTTTAAGGG-AAAAGTAAAAAGAAAAAAG-TTTGGAGATTTGGAGG
*
81628170 AAGTAAAA
64 AAATAAAA
* * *
81628178 GTTTTGAGGGGAAGTAAAAGTTTTAAGGGGAAAGTAAAAAGAAAAAAGTTTGGAGTTTTGGGGGA
1 GTTTTG-GGGGAAGTAAAAGTTTTAAGGGAAAAGTAAAAAGAAAAAAGTTTGGAGATTTGGAGGA
81628243 AATAAAA
65 AATAAAA
*
81628250 TTTTTGG
1 GTTTTGG
81628257 AAAAAAATAA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
71 1 0.01
72 25 0.37
73 22 0.32
74 20 0.29
ACGTcount: A:0.39, C:0.00, G:0.34, T:0.28
Consensus pattern (71 bp):
GTTTTGGGGGAAGTAAAAGTTTTAAGGGAAAAGTAAAAAGAAAAAAGTTTGGAGATTTGGAGGAA
ATAAAA
Found at i:81628214 original size:20 final size:19
Alignment explanation
Indices: 81628168--81628216 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 19
81628158 GGGATTTGGA
*
81628168 GGAAGTAAAAGTTTTGAGG
1 GGAAGTAAAAGTTTTAAGG
81628187 GGAAGTAAAAGTTTTAAGG
1 GGAAGTAAAAGTTTTAAGG
81628206 GGAAAGTAAAA
1 GG-AAGTAAAA
81628217 AGAAAAAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 20 0.71
20 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.33, T:0.22
Consensus pattern (19 bp):
GGAAGTAAAAGTTTTAAGG
Found at i:81628299 original size:23 final size:23
Alignment explanation
Indices: 81628255--81628299 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
81628245 TAAAATTTTT
**
81628255 GGAAAAAAATAAAAGGGTTTGAG
1 GGAAAAAAATAAAAGGACTTGAG
* *
81628278 GGAAGAAAATAAAATGACTTGA
1 GGAAAAAAATAAAAGGACTTGA
81628300 TATTTAATTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.53, C:0.02, G:0.27, T:0.18
Consensus pattern (23 bp):
GGAAAAAAATAAAAGGACTTGAG
Found at i:81631890 original size:36 final size:36
Alignment explanation
Indices: 81631850--81631926 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
81631840 AGGGCTAATT
81631850 TGAAAAATGCCCTAAATATATGTATATGGATTGAAC
1 TGAAAAATGCCCTAAATATATGTATATGGATTGAAC
* **** *
81631886 TGAAAGATTTTTTGAATATATGTATATGGATTGAAC
1 TGAAAAATGCCCTAAATATATGTATATGGATTGAAC
81631922 TGAAA
1 TGAAA
81631927 GATTTTTTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.06, G:0.18, T:0.35
Consensus pattern (36 bp):
TGAAAAATGCCCTAAATATATGTATATGGATTGAAC
Found at i:81631927 original size:36 final size:36
Alignment explanation
Indices: 81631864--81631939 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
81631854 AAATGCCCTA
81631864 AATATATGTATATGGATTGAACTGAAAGATTTTTTG
1 AATATATGTATATGGATTGAACTGAAAGATTTTTTG
81631900 AATATATGTATATGGATTGAACTGAAAGATTTTTTG
1 AATATATGTATATGGATTGAACTGAAAGATTTTTTG
81631936 AATA
1 AATA
81631940 AAAGAGTTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (36 bp):
AATATATGTATATGGATTGAACTGAAAGATTTTTTG
Found at i:81632354 original size:42 final size:43
Alignment explanation
Indices: 81632297--81632402 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 43
81632287 TGAGATTTAT
* *
81632297 GTGTAAGACCATGTCTGGGACATTGACATCG-TATTTCATTTC
1 GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTCATTAC
* * *
81632339 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTCATTAC
* * *
81632382 ATGTAAGACCACGTTTGGGAC
1 GTGTAAGACCATGTCTGGGAC
81632403 GTTGGTATTG
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 28 0.52
43 26 0.48
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTCATTAC
Found at i:81636077 original size:13 final size:13
Alignment explanation
Indices: 81636041--81636151 Score: 73
Period size: 13 Copynumber: 8.4 Consensus size: 13
81636031 ATCCAATGTT
*
81636041 CCATTTCATATAT
1 CCATTTCATATAA
*
81636054 CTATTTCCATATAA
1 CCATTT-CATATAA
*
81636068 CCGA-TTCATATCA
1 CC-ATTTCATATAA
*
81636081 CCATTTCATATAT
1 CCATTTCATATAA
** *
81636094 TTATTTTTATATAA
1 CCA-TTTCATATAA
81636108 CCGA-TTCATATAA
1 CC-ATTTCATATAA
*
81636121 CCAATTCATATAA
1 CCATTTCATATAA
* * *
81636134 ACACTTCATCTAA
1 CCATTTCATATAA
81636147 CCATT
1 CCATT
81636152 CCATTTACTT
Statistics
Matches: 74, Mismatches: 18, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
12 2 0.03
13 53 0.72
14 17 0.23
15 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.02, T:0.41
Consensus pattern (13 bp):
CCATTTCATATAA
Found at i:81636085 original size:40 final size:40
Alignment explanation
Indices: 81636041--81636132 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
81636031 ATCCAATGTT
*
81636041 CCATTTCATATATCTATTTCCATATAACCGATTCATATCA
1 CCATTTCATATATCTATTTCCATATAACCGATTCATATAA
* **
81636081 CCATTTCATATATTTATTTTTATATAACCGATTCATATAA
1 CCATTTCATATATCTATTTCCATATAACCGATTCATATAA
*
81636121 CCAATTCATATA
1 CCATTTCATATA
81636133 AACACTTCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.42
Consensus pattern (40 bp):
CCATTTCATATATCTATTTCCATATAACCGATTCATATAA
Found at i:81636873 original size:21 final size:22
Alignment explanation
Indices: 81636832--81636874 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
81636822 TTTTTCAATA
81636832 TTTTACACTTTTACCTTAATTTT
1 TTTTACACTTTTA-CTTAATTTT
81636855 TTTTAC-CTTTTA-TTCAATTT
1 TTTTACACTTTTACTT-AATTT
81636875 AATCCCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 2 0.11
21 5 0.26
22 6 0.32
23 6 0.32
ACGTcount: A:0.21, C:0.16, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTACACTTTTACTTAATTTT
Found at i:81646609 original size:16 final size:16
Alignment explanation
Indices: 81646585--81646618 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81646575 AAACCCCAAC
*
81646585 GTCGTGACGACGCGAT
1 GTCGCGACGACGCGAT
*
81646601 GTCGCGACGATGCGAT
1 GTCGCGACGACGCGAT
81646617 GT
1 GT
81646619 GATTTTCCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.24, G:0.38, T:0.21
Consensus pattern (16 bp):
GTCGCGACGACGCGAT
Found at i:81650504 original size:32 final size:31
Alignment explanation
Indices: 81650427--81650507 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 31
81650417 GTAGTTTGCC
81650427 ACTTGAACTTGTCC-AAAAGTCCTACTTGGT
1 ACTTGAACTTGTCCAAAAAGTCCTACTTGGT
* *
81650457 ACCT-ACACTTGTCCAAAAAGTACCTAGTTGGT
1 ACTTGA-ACTTGTCCAAAAAGT-CCTACTTGGT
* *
81650489 GCTTGAACTTATCCAAAAA
1 ACTTGAACTTGTCCAAAAA
81650508 ATTATACTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
29 1 0.02
30 11 0.26
31 6 0.14
32 23 0.55
33 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (31 bp):
ACTTGAACTTGTCCAAAAAGTCCTACTTGGT
Found at i:81652476 original size:29 final size:28
Alignment explanation
Indices: 81652421--81652476 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
81652411 GATATATACA
* *
81652421 ATATAAAAATATATAAAAGAATTAGTAT
1 ATATAAAAATATATAAAAAAATGAGTAT
81652449 ATATAAAAA-ATATAAAATAAAGTGAGTA
1 ATATAAAAATATATAAAA-AAA-TGAGTA
81652477 ATTGTTAACG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 11 0.46
29 5 0.21
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (28 bp):
ATATAAAAATATATAAAAAAATGAGTAT
Found at i:81652898 original size:25 final size:24
Alignment explanation
Indices: 81652854--81652934 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 24
81652844 TATACATAAC
*
81652854 ATATAATAAAATAATAATAATAAGTAAT
1 ATATAAT-AAA-AAT-ATAATAAAT-AT
*
81652882 ATATAATAAAAATATAATAAATGTT
1 ATATAATAAAAATATAATAAAT-AT
81652907 ATATAAT-AAAATATAATAAATAT
1 ATATAATAAAAATATAATAAATAT
81652930 ATATA
1 ATATA
81652935 GGAAAATAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
23 6 0.12
24 14 0.29
25 16 0.33
26 3 0.06
27 3 0.06
28 7 0.14
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (24 bp):
ATATAATAAAAATATAATAAATAT
Found at i:81652925 original size:3 final size:3
Alignment explanation
Indices: 81652856--81652901 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
81652846 TACATAACAT
*
81652856 ATA ATA A-A ATA ATA ATA ATA AGTA ATA TATA ATA AAA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA -ATA ATA ATA ATA ATA ATA
81652901 A
1 A
81652902 ATGTTATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 4 0.11
3 27 0.73
4 6 0.16
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:81652928 original size:28 final size:27
Alignment explanation
Indices: 81652789--81652925 Score: 95
Period size: 28 Copynumber: 5.0 Consensus size: 27
81652779 TTTTAAAATT
*
81652789 ATAAAT-A-ATATAATGAATAATATAAAA
1 ATAAATAATATATAAT-AA-AATATAATA
* * **
81652816 CATAAATAATATAATGGATAATATACGAT-
1 -ATAAATAATAT-AT-AATAAAATATAATA
* *
81652845 ATACATAACATATAATAAAATAATAATA
1 ATAAATAATATATAATAAAAT-ATAATA
*
81652873 ATAAGTAATATATAATAAAA-AT-ATA
1 ATAAATAATATATAATAAAATATAATA
**
81652898 ATAAATGTTATATAATAAAATATAATA
1 ATAAATAATATATAATAAAATATAATA
81652925 A
1 A
81652926 ATATATATAG
Statistics
Matches: 84, Mismatches: 17, Indels: 17
0.71 0.14 0.14
Matches are distributed among these distances:
25 20 0.24
26 10 0.12
27 9 0.11
28 32 0.38
29 1 0.01
30 6 0.07
31 4 0.05
32 2 0.02
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.31
Consensus pattern (27 bp):
ATAAATAATATATAATAAAATATAATA
Found at i:81652955 original size:14 final size:14
Alignment explanation
Indices: 81652796--81652957 Score: 78
Period size: 14 Copynumber: 11.9 Consensus size: 14
81652786 ATTATAAATA
*
81652796 ATATAATGAATAAT
1 ATATAATAAATAAT
*
81652810 ATA-AA-ACATAAAT
1 ATATAATAAAT-AAT
**
81652823 AATATAATGGATAAT
1 -ATATAATAAATAAT
* * *
81652838 ATACGATATACATAAC
1 ATA-TA-ATAAATAAT
81652854 ATATAATAAAATAAT
1 ATATAAT-AAATAAT
*
81652869 A-ATAATAAGTAAT
1 ATATAATAAATAAT
81652882 ATATAAT-AA-AA-
1 ATATAATAAATAAT
*
81652893 ATATAATAAAT-GT
1 ATATAATAAATAAT
*
81652906 -TAT-AT-AATAAA
1 ATATAATAAATAAT
81652917 ATATAATAAAT-AT
1 ATATAATAAATAAT
81652930 ATATAGGA-AAATAAT
1 ATATA--ATAAATAAT
*
81652945 ATATGATAAATAA
1 ATATAATAAATAA
81652958 AAATTTTATA
Statistics
Matches: 111, Mismatches: 18, Indels: 38
0.66 0.11 0.23
Matches are distributed among these distances:
10 3 0.03
11 9 0.08
12 12 0.11
13 22 0.20
14 34 0.31
15 20 0.18
16 11 0.10
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31
Consensus pattern (14 bp):
ATATAATAAATAAT
Found at i:81653002 original size:28 final size:28
Alignment explanation
Indices: 81652939--81653022 Score: 72
Period size: 26 Copynumber: 3.2 Consensus size: 28
81652929 TATATAGGAA
** *
81652939 AATAATATATGATAAATAAAAATTTT-AT
1 AATAATATAT-ATAAATAGTATTTTTAAT
81652967 AA-AA-ATATATAAATAGTATTTTTAAT
1 AATAATATATATAAATAGTATTTTTAAT
* *
81652993 AATAATATATGT--ATAGTTTTTTTAA-
1 AATAATATATATAAATAGTATTTTTAAT
81653018 AATAA
1 AATAA
81653023 AAAATAAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
25 17 0.35
26 20 0.42
27 4 0.08
28 7 0.15
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (28 bp):
AATAATATATATAAATAGTATTTTTAAT
Found at i:81654190 original size:20 final size:21
Alignment explanation
Indices: 81654165--81654203 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
81654155 GGTCTGTTTG
81654165 GGTCTAGTTTAAGT-TGGGCT
1 GGTCTAGTTTAAGTCTGGGCT
81654185 GGTCTAGTTTAAGTCTGGG
1 GGTCTAGTTTAAGTCTGGG
81654204 TTTGCTGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.15, C:0.10, G:0.36, T:0.38
Consensus pattern (21 bp):
GGTCTAGTTTAAGTCTGGGCT
Found at i:81655761 original size:26 final size:25
Alignment explanation
Indices: 81655705--81655762 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
81655695 AAAAAATAAA
81655705 AAAAAATTTAAAATTTAAAATATTT
1 AAAAAATTTAAAATTTAAAATATTT
* * *
81655730 ATAAAAATTCTAAAATTTATATTTTTT
1 A-AAAAATT-TAAAATTTAAAATATTT
81655757 AAAAAA
1 AAAAAA
81655763 CTATAACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 12 0.43
27 15 0.54
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (25 bp):
AAAAAATTTAAAATTTAAAATATTT
Found at i:81656737 original size:15 final size:15
Alignment explanation
Indices: 81656714--81656748 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
81656704 CTTTGTCCCT
*
81656714 AAAACGTAGCAATGA
1 AAAATGTAGCAATGA
81656729 AAAATGTAGCAATGA
1 AAAATGTAGCAATGA
81656744 AAAAT
1 AAAAT
81656749 TTTCAAGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.57, C:0.09, G:0.17, T:0.17
Consensus pattern (15 bp):
AAAATGTAGCAATGA
Found at i:81657340 original size:30 final size:31
Alignment explanation
Indices: 81657301--81657365 Score: 105
Period size: 30 Copynumber: 2.1 Consensus size: 31
81657291 AACCCTTCCT
*
81657301 GCATTAAATCCAACCAAAAA-AGCAAATATA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
*
81657331 GCATGAAATCCAACCAAAAACAGCAAATGTA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
81657362 GCAT
1 GCAT
81657366 AAAAATACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 19 0.59
31 13 0.41
ACGTcount: A:0.52, C:0.22, G:0.11, T:0.15
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAGCAAATATA
Found at i:81657381 original size:31 final size:31
Alignment explanation
Indices: 81657301--81657383 Score: 89
Period size: 31 Copynumber: 2.7 Consensus size: 31
81657291 AACCCTTCCT
* *
81657301 GCATTAAATCCAACCAAAAA-AGCAAATATA
1 GCATAAAATACAACCAAAAACAGCAAATATA
* * *
81657331 GCATGAAATCCAACCAAAAACAGCAAATGTA
1 GCATAAAATACAACCAAAAACAGCAAATATA
*
81657362 GCATAAAAATACAA-TAAAAACA
1 GCAT-AAAATACAACCAAAAACA
81657384 TTAAATCTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
30 19 0.41
31 20 0.43
32 7 0.15
ACGTcount: A:0.58, C:0.19, G:0.08, T:0.14
Consensus pattern (31 bp):
GCATAAAATACAACCAAAAACAGCAAATATA
Found at i:81657620 original size:21 final size:21
Alignment explanation
Indices: 81657596--81657640 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
81657586 TTTTGCTCTG
81657596 CTCTG-CTACCATCGCTGCTGC
1 CTCTGCCT-CCATCGCTGCTGC
*
81657617 CTCTGCCTCCCTCGCTGCTGC
1 CTCTGCCTCCATCGCTGCTGC
81657638 CTC
1 CTC
81657641 CGCTCTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.04, C:0.49, G:0.18, T:0.29
Consensus pattern (21 bp):
CTCTGCCTCCATCGCTGCTGC
Found at i:81658076 original size:13 final size:14
Alignment explanation
Indices: 81658050--81658078 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
81658040 ACTAACGACG
81658050 AATTAAACCATTAT
1 AATTAAACCATTAT
81658064 AATTAAA-CATTAT
1 AATTAAACCATTAT
81658077 AA
1 AA
81658079 ATATTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:81663149 original size:9 final size:9
Alignment explanation
Indices: 81663135--81663170 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
81663125 TAAGTATAAT
81663135 TAAGTTATG
1 TAAGTTATG
81663144 TAAGTTATG
1 TAAGTTATG
*
81663153 TAAATTATG
1 TAAGTTATG
81663162 TAAGTTATG
1 TAAGTTATG
81663171 AATTTTGATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.19, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:81663213 original size:46 final size:46
Alignment explanation
Indices: 81663134--81663441 Score: 291
Period size: 46 Copynumber: 6.8 Consensus size: 46
81663124 ATAAGTATAA
* *
81663134 TTAAGTTATGTAAGTTATGTAAATTATGTAAGTTATGAATTTTGATCT
1 TTAAATTATGTAAGTTATGT--ATTATGTAAGTTATGAAATTTGATCT
*
81663182 TTAAATTATGTAAGTTACGTATTATGTAAGTTATGAAATTTGATCT
1 TTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCT
* * * **
81663228 TTAAATTATTATATAAGTTATGTAAATTAAGTAACTTATGAAATTTGATGGA
1 TT-AA--ATTATGTAAGTTATGT--ATTATGTAAGTTATGAAATTTGAT-CT
* **
81663280 TTAAATTATGTAAGTTATG------G-AA-TT-TGAACTTT-A-AA
1 TTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCT
* * *
81663315 TT-A-TTATGCAAGTTATGTAAATTATGTAACTTATGAAATTTGGTCT
1 TTAAATTATGTAAGTTATGT--ATTATGTAAGTTATGAAATTTGATCT
*
81663361 TTAAATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGATCT
1 TTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCT
*
81663407 TTAAATTATGTAAGTCATGTATTATGTAAGTTATG
1 TTAAATTATGTAAGTTATGTATTATGTAAGTTATG
81663442 CATTATGTAA
Statistics
Matches: 216, Mismatches: 23, Indels: 44
0.76 0.08 0.16
Matches are distributed among these distances:
33 13 0.06
34 1 0.00
35 3 0.01
37 1 0.00
38 7 0.03
39 2 0.01
40 2 0.01
41 2 0.01
42 2 0.01
43 2 0.01
44 7 0.03
46 85 0.39
47 3 0.01
48 32 0.15
49 28 0.13
51 24 0.11
52 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (46 bp):
TTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCT
Found at i:81663297 original size:82 final size:81
Alignment explanation
Indices: 81663202--81663379 Score: 275
Period size: 82 Copynumber: 2.2 Consensus size: 81
81663192 TAAGTTACGT
* *
81663202 ATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATATAAGTTATGTAAATTAAGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATACAAGTTATGTAAATTAAGTAACTTAT
*
81663267 GAAATTTGATGGATTAA
66 GAAATTTGAT-CATTAA
* * *
81663284 ATTATGTAAGTTATGGAATTTGAACTTTAAATTATTATGCAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATACAAGTTATGTAAATTAAGTAACTTAT
* *
81663349 GAAATTTGGTCTTTAA
66 GAAATTTGATCATTAA
81663365 ATTATGTAAGTTATG
1 ATTATGTAAGTTATG
81663380 TATCATGTAA
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
81 19 0.22
82 69 0.78
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (81 bp):
ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATACAAGTTATGTAAATTAAGTAACTTAT
GAAATTTGATCATTAA
Found at i:81663340 original size:51 final size:51
Alignment explanation
Indices: 81663281--81663415 Score: 181
Period size: 51 Copynumber: 2.7 Consensus size: 51
81663271 TTTGATGGAT
* *
81663281 TAAATTATGTAAGTTATGGAATTTGAACTTTAAATTATTATGCAAGTTATG
1 TAAATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGCAAGTTATG
* * *
81663332 TAAATTATGTAACTTATGAAATTTGGTCTTT-AA--ATTATGTAAGTTATG
1 TAAATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGCAAGTTATG
*
81663380 T--ATCATGTAAGTTATGAAATTTGATCTTTAAATTAT
1 TAAATTATGTAAGTTATGAAATTTGATCTTTAAATTAT
81663416 GTAAGTCATG
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
46 25 0.34
47 2 0.03
48 15 0.21
49 2 0.03
50 2 0.03
51 27 0.37
ACGTcount: A:0.36, C:0.04, G:0.14, T:0.45
Consensus pattern (51 bp):
TAAATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGCAAGTTATG
Found at i:81663434 original size:62 final size:62
Alignment explanation
Indices: 81663365--81663504 Score: 235
Period size: 62 Copynumber: 2.3 Consensus size: 62
81663355 TGGTCTTTAA
*
81663365 ATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGT
1 ATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGT
* * *
81663427 ATTATGTAAGTTATGCATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGT
1 ATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGT
*
81663489 ATTATGTAAATTATGT
1 ATTATGTAAGTTATGT
81663505 GAGTTGCTGG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 72 1.00
ACGTcount: A:0.35, C:0.04, G:0.16, T:0.46
Consensus pattern (62 bp):
ATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGT
Found at i:81663454 original size:16 final size:16
Alignment explanation
Indices: 81663364--81663503 Score: 112
Period size: 16 Copynumber: 9.0 Consensus size: 16
81663354 TTGGTCTTTA
81663364 AATTATGTAAGTTATG
1 AATTATGTAAGTTATG
* *
81663380 TATCATGTAAGTTATG
1 AATTATGTAAGTTATG
** *
81663396 AAATT-TG-ATCTT-TA
1 -AATTATGTAAGTTATG
*
81663410 AATTATGTAAGTCATG
1 AATTATGTAAGTTATG
*
81663426 TATTATGTAAGTTATG
1 AATTATGTAAGTTATG
*
81663442 CATTATGTAAGTTATG
1 AATTATGTAAGTTATG
* *
81663458 AAATT-TG-AACTT-TA
1 -AATTATGTAAGTTATG
81663472 AATTATGTAAGTTATG
1 AATTATGTAAGTTATG
* *
81663488 TATTATGTAAATTATG
1 AATTATGTAAGTTATG
81663504 TGAGTTGCTG
Statistics
Matches: 95, Mismatches: 21, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
13 8 0.08
14 6 0.06
15 13 0.14
16 63 0.66
17 5 0.05
ACGTcount: A:0.36, C:0.04, G:0.16, T:0.45
Consensus pattern (16 bp):
AATTATGTAAGTTATG
Found at i:81665005 original size:14 final size:15
Alignment explanation
Indices: 81664983--81665019 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
81664973 TTAGTATACA
81664983 ATATAATTTTACTTC
1 ATATAATTTTACTTC
81664998 ATAT-ATTTTACTTC
1 ATATAATTTTACTTC
*
81665012 AAATAATT
1 ATATAATT
81665020 ATTATAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATAATTTTACTTC
Found at i:81667216 original size:37 final size:37
Alignment explanation
Indices: 81667099--81667208 Score: 157
Period size: 37 Copynumber: 3.0 Consensus size: 37
81667089 CTATGCAGCA
*
81667099 GATGCACAGGGCGAAGGCGATGGAGGAGATGGGTTGC
1 GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
* * * *
81667136 GATACACGAGGCGAAGGCGATGGAGGGGATGGTTTGC
1 GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
* *
81667173 GATGCACGGGGAGAAGGCGACGGAGGAGATGGGTTG
1 GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTG
81667209 TAATGCACAA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.13, G:0.49, T:0.14
Consensus pattern (37 bp):
GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
Found at i:81667223 original size:37 final size:37
Alignment explanation
Indices: 81667099--81667223 Score: 142
Period size: 37 Copynumber: 3.4 Consensus size: 37
81667089 CTATGCAGCA
* *
81667099 GATGCACAGGGCGAAGGCGATGGAGGAGATGGGTTGC
1 GATGCACAAGGAGAAGGCGATGGAGGAGATGGGTTGC
* * * * *
81667136 GATACACGAGGCGAAGGCGATGGAGGGGATGGTTTGC
1 GATGCACAAGGAGAAGGCGATGGAGGAGATGGGTTGC
** * *
81667173 GATGCACGGGGAGAAGGCGACGGAGGAGATGGGTTGT
1 GATGCACAAGGAGAAGGCGATGGAGGAGATGGGTTGC
*
81667210 AATGCACAAGGAGA
1 GATGCACAAGGAGA
81667224 TTTGGGGGAA
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.27, C:0.13, G:0.46, T:0.14
Consensus pattern (37 bp):
GATGCACAAGGAGAAGGCGATGGAGGAGATGGGTTGC
Found at i:81667293 original size:24 final size:25
Alignment explanation
Indices: 81667243--81667293 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
81667233 AAACTTGCCG
* *
81667243 ATTTGGGGAAATTAGGGACTTCTGA
1 ATTTAGGGAAATTAGGGACTTCAGA
*
81667268 ATTTAGGGAAATT-GGGATTTCAGA
1 ATTTAGGGAAATTAGGGACTTCAGA
81667292 AT
1 AT
81667294 CGGGGCAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.33
Consensus pattern (25 bp):
ATTTAGGGAAATTAGGGACTTCAGA
Found at i:81668142 original size:14 final size:14
Alignment explanation
Indices: 81668125--81668166 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
81668115 AACCTAAAAT
*
81668125 CATAAACACTAAAC
1 CATAAACACCAAAC
81668139 CATAAACACCAAAC
1 CATAAACACCAAAC
81668153 CATAAACACCAAAC
1 CATAAACACCAAAC
81668167 ACCAAACCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.57, C:0.33, G:0.00, T:0.10
Consensus pattern (14 bp):
CATAAACACCAAAC
Found at i:81668166 original size:21 final size:21
Alignment explanation
Indices: 81668142--81668187 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
81668132 ACTAAACCAT
81668142 AAACACCAAACCATAAACACC
1 AAACACCAAACCATAAACACC
* *
81668163 AAACACCAAACCCTAAACCCC
1 AAACACCAAACCATAAACACC
81668184 AAAC
1 AAAC
81668188 TTTAAACCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.54, C:0.41, G:0.00, T:0.04
Consensus pattern (21 bp):
AAACACCAAACCATAAACACC
Found at i:81668702 original size:14 final size:14
Alignment explanation
Indices: 81668655--81668704 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
81668645 ATTAAAACCC
*
81668655 TAAACCCTAAAATAA
1 TAAACCCTAAAA-CA
81668670 TAAACCCTAAAAC-
1 TAAACCCTAAAACA
*
81668683 TCAAACTCTAAAACA
1 T-AAACCCTAAAACA
81668698 TAAACCC
1 TAAACCC
81668705 ATACCCCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 1 0.03
14 16 0.53
15 13 0.43
ACGTcount: A:0.54, C:0.28, G:0.00, T:0.18
Consensus pattern (14 bp):
TAAACCCTAAAACA
Found at i:81669150 original size:105 final size:105
Alignment explanation
Indices: 81668968--81669157 Score: 326
Period size: 105 Copynumber: 1.8 Consensus size: 105
81668958 CTCTATAGCC
* * * *
81668968 ACTTTTGCGGCATTTTTATAGAAGTGCCGTTAATTCTGAAATATTGTGGCATTTTTAGTAAAACG
1 ACTTTTGCGGCATTTCTAAAGAAGTGCCCTTAATTCTGAAATATTGTGGCATTTTAAGTAAAACG
81669033 CCACTAATGCCTCTATAGCTACGTCGTAGTTTATCTCAAG
66 CCACTAATGCCTCTATAGCTACGTCGTAGTTTATCTCAAG
* *
81669073 ACTTTTGCGGCGTTTCTAAAGAAGTGCCCTTAATTCTGATATATTGTGGCATTTTAAGTAAAACG
1 ACTTTTGCGGCATTTCTAAAGAAGTGCCCTTAATTCTGAAATATTGTGGCATTTTAAGTAAAACG
81669138 CCACTAATGCCTCTATAGCT
66 CCACTAATGCCTCTATAGCT
81669158 CATTAACATA
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
105 79 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (105 bp):
ACTTTTGCGGCATTTCTAAAGAAGTGCCCTTAATTCTGAAATATTGTGGCATTTTAAGTAAAACG
CCACTAATGCCTCTATAGCTACGTCGTAGTTTATCTCAAG
Found at i:81669299 original size:41 final size:40
Alignment explanation
Indices: 81669193--81669302 Score: 100
Period size: 41 Copynumber: 2.7 Consensus size: 40
81669183 CAACACTGTT
** * *
81669193 GCGGCGTTTTCTGAAAAACACCACTAATGCTTGATTATTT
1 GCGGCGTTTTCTTTAAAGCACCACTAATGCTTGATTATTA
* *
81669233 GCGGCCTTTT-TTTAACAAGCGCCACTATAT-CTCTGACTT-TTA
1 GCGGCGTTTTCTTT-A-AAGCACCACTA-ATGCT-TGA-TTATTA
81669275 GCGGCGTTTTCTTTAAAGCACCACTAAT
1 GCGGCGTTTTCTTTAAAGCACCACTAAT
81669303 ATATAACTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
39 1 0.02
40 12 0.21
41 21 0.38
42 17 0.30
43 5 0.09
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (40 bp):
GCGGCGTTTTCTTTAAAGCACCACTAATGCTTGATTATTA
Found at i:81672016 original size:26 final size:26
Alignment explanation
Indices: 81671979--81672062 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
81671969 TGATACAAAT
*
81671979 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
81672005 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
81672031 TGATAATATGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
81672057 TGATAA
1 TGATAA
81672063 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:81674986 original size:17 final size:17
Alignment explanation
Indices: 81674962--81674994 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
81674952 AAATTTTTAA
81674962 AAATAATAATG-ATACG
1 AAATAATAATGCATACG
81674978 AAATCAATAATGCATAC
1 AAAT-AATAATGCATAC
81674995 TTAGAGTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
AAATAATAATGCATACG
Found at i:81677236 original size:44 final size:44
Alignment explanation
Indices: 81676852--81677301 Score: 247
Period size: 44 Copynumber: 10.1 Consensus size: 44
81676842 AAGATCTATA
* * * *
81676852 ATTTATAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAG
1 ATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
* ** * * *
81676896 ATTTGATATCTTCAGGCCGCTTTACTGTAACTTCAGAGAGATAAG
1 ATTTG-TAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
* ** * * * * * * * * *
81676941 ACTTGTAATTTCGACCTGCCCCAATACAACTTCAGGGGGGTAAG
1 ATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
* * * * * *
81676985 GTTTGTGGCTTCAATCTACTCCACTACAACTTCAGGGAGATAAG
1 ATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
* * ** * ** *
81677029 ATCCAACATGGTAGATTTGATCCGAC-CTACTGCAACTTCAGAGCTATAGG
1 AT------TTGTAGCTTCAATCTG-CTCTACTGCAACTTCAGAGAGATAAG
* *
81677079 ATTTGTAGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAG
1 ATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
* * ** * *
81677123 ATCTGCTATCTTCAGGCTGCTCCACTGCAACTTCAGGGAGATAAG
1 ATTTG-TAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
* ** * * * * * *
81677168 ACTTGTAATTTCGACCTGCCCTACTGTAACTTCAGGGGGATAAG
1 ATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
* * * *
81677212 ATTTGTGGCTTCAATCTACTCTACTACAACTTTAGAGAGATAAG
1 ATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
* * * * *
81677256 A-TGGTGGCTTAAATCTGCTCTACTGCAACTTCAGGGAGACAAG
1 ATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
81677299 ATT
1 ATT
81677302 CACCGTCTTT
Statistics
Matches: 296, Mismatches: 99, Indels: 22
0.71 0.24 0.05
Matches are distributed among these distances:
43 37 0.12
44 160 0.54
45 69 0.23
50 29 0.10
51 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
ATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
Found at i:81677277 original size:43 final size:43
Alignment explanation
Indices: 81677195--81677300 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 43
81677185 GCCCTACTGT
* * * *
81677195 AACTTCAGGGGGATAAGATTTGTGGCTTCAATCTACTCTACTAC
1 AACTTCAGAGAGATAAGA-TGGTGGCTTAAATCTACTCTACTAC
* * *
81677239 AACTTTAGAGAGATAAGATGGTGGCTTAAATCTGCTCTACTGC
1 AACTTCAGAGAGATAAGATGGTGGCTTAAATCTACTCTACTAC
* *
81677282 AACTTCAGGGAGACAAGAT
1 AACTTCAGAGAGATAAGAT
81677301 TCACCGTCTT
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
43 37 0.71
44 15 0.29
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (43 bp):
AACTTCAGAGAGATAAGATGGTGGCTTAAATCTACTCTACTAC
Found at i:81677356 original size:45 final size:45
Alignment explanation
Indices: 81677271--81677487 Score: 120
Period size: 45 Copynumber: 4.9 Consensus size: 45
81677261 GGCTTAAATC
* **
81677271 TGCTCTACTGCAACTTCAGGGAGACAAGATTCACCGTCTTTGATT
1 TGCTCCACTGCAACTTCAGGGAGACAAGATTCACAATCTTTGATT
* * * **
81677316 TGCTCCACTGTAACTTCGGGGAGACAAGA-TCTACAATCTTTTAACC
1 TGCTCCACTGCAACTTCAGGGAGACAAGATTC-ACAATC-TTTGATT
* * * * ***** ** *
81677362 TACTCCACTACAACTT-AGGGAGATAGGA-T-GGTGGCTTAAATC
1 TGCTCCACTGCAACTTCAGGGAGACAAGATTCACAATCTTTGATT
** ** * *
81677404 TGCTCCACTGCAACTTCAGGGAGACAAGATTTGCCGTCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGACAAGATTCACAATCTTTGATT
* *
81677449 TACTCCACTGCAACTTCAGAGAGACAAGA-TCTACAATCT
1 TGCTCCACTGCAACTTCAGGGAGACAAGATTC-ACAATCT
81677488 GTAGCGTACT
Statistics
Matches: 130, Mismatches: 36, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
42 19 0.15
43 11 0.08
44 4 0.03
45 79 0.61
46 17 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (45 bp):
TGCTCCACTGCAACTTCAGGGAGACAAGATTCACAATCTTTGATT
Found at i:81677405 original size:133 final size:132
Alignment explanation
Indices: 81677227--81677520 Score: 426
Period size: 133 Copynumber: 2.2 Consensus size: 132
81677217 TGGCTTCAAT
* * * *
81677227 CTACTCTACTACAACTTTAGAGAGATAAGATGGTGGCTTAAATCTGCTCTACTGCAACTTCAGGG
1 CTACTCCACTACAAC-TTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAACTTCAGGG
* * * * * * *
81677292 AGACAAGATTCACCGTCTTTGATTTGCTCCACTGTAACTTCGGGGAGACAAGATCTACAATCTTT
65 AGACAAGATTCACCGTCTTCGATCTACTCCACTGCAACTTCAGAGAGACAAGATCTACAATC-TG
81677357 TAAC
129 TAAC
81677361 CTACTCCACTACAACTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAACTTCAGGGA
1 CTACTCCACTACAACTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAACTTCAGGGA
**
81677426 GACAAGATTTGCCGTCTTCGATCTACTCCACTGCAACTTCAGAGAGACAAGATCTACAATCTGTA
66 GACAAGATTCACCGTCTTCGATCTACTCCACTGCAACTTCAGAGAGACAAGATCTACAATCTGTA
*
81677491 GC
131 AC
* *
81677493 GTACTCCACTACAACTTAGGAAGATAGG
1 CTACTCCACTACAACTTAGGGAGATAGG
81677521 GCTTGTGAGT
Statistics
Matches: 144, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
132 30 0.21
133 100 0.69
134 14 0.10
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (132 bp):
CTACTCCACTACAACTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAACTTCAGGGA
GACAAGATTCACCGTCTTCGATCTACTCCACTGCAACTTCAGAGAGACAAGATCTACAATCTGTA
AC
Found at i:81677498 original size:45 final size:44
Alignment explanation
Indices: 81677406--81677509 Score: 111
Period size: 45 Copynumber: 2.3 Consensus size: 44
81677396 CTTAAATCTG
* * * ** *
81677406 CTCCACTGCAACTTCAGGGAGACAAGATTTGCCGTCTTCGATCTA
1 CTCCACTGCAACTTCAGAGAGACAAGATCTACAATCTTC-AGCTA
81677451 CTCCACTGCAACTTCAGAGAGACAAGATCTACAATCTGT-AGCGTA
1 CTCCACTGCAACTTCAGAGAGACAAGATCTACAATCT-TCAGC-TA
*
81677496 CTCCACTACAACTT
1 CTCCACTGCAACTT
81677510 AGGAAGATAG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 2 0.04
45 47 0.94
46 1 0.02
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGAGAGACAAGATCTACAATCTTCAGCTA
Found at i:81677694 original size:64 final size:64
Alignment explanation
Indices: 81677593--81677720 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
81677583 TCATGTATCA
* *
81677593 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATAAATCAAATGCTCCTAACTAGATGTG
* *
81677657 ATGCTTATGTCAAATAATTAGGATGTTATGATCGAAATAAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATAAATCAAATGCTCCTAACTAGATGTG
81677721 TTATTATATG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATAAATCAAATGCTCCTAACTAGATGTG
Found at i:81681193 original size:123 final size:126
Alignment explanation
Indices: 81680971--81681225 Score: 489
Period size: 123 Copynumber: 2.0 Consensus size: 126
81680961 GATACCCTTT
81680971 GCTCATATTATTCACTTCATTTTCATTTCTCTTTGGGGTTGACCTTTGGGCGCTTTCTCCTGCGT
1 GCTCATATTATTCACTTCATTTTCATTTCTCTTTGGGGTTGACCTTTGGGCGCTTTCTCCTGCGT
81681036 CTATCTTCCCGCTCCTAATCATGTTTTCAATCATCTCGCTGGACATTACTATATCTGAGAA
66 CTATCTTCCCGCTCCTAATCATGTTTTCAATCATCTCGCTGGACATTACTATATCTGAGAA
81681097 GCTCATATTATTCACTTCATTTTCA-TTCTCTTTGGGGTTGACCTTT-GGCGCTTTCTCCTGCGT
1 GCTCATATTATTCACTTCATTTTCATTTCTCTTTGGGGTTGACCTTTGGGCGCTTTCTCCTGCGT
81681160 CTATCTT-CCGCTCCTAATCATGTTTTCAATCATCTCGCTGGACATTACTATATCTGAGAA
66 CTATCTTCCCGCTCCTAATCATGTTTTCAATCATCTCGCTGGACATTACTATATCTGAGAA
81681220 GCTCAT
1 GCTCAT
81681226 GGTAGCACTT
Statistics
Matches: 129, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
123 59 0.46
124 24 0.19
125 21 0.16
126 25 0.19
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.41
Consensus pattern (126 bp):
GCTCATATTATTCACTTCATTTTCATTTCTCTTTGGGGTTGACCTTTGGGCGCTTTCTCCTGCGT
CTATCTTCCCGCTCCTAATCATGTTTTCAATCATCTCGCTGGACATTACTATATCTGAGAA
Found at i:81682310 original size:19 final size:19
Alignment explanation
Indices: 81682269--81682314 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
81682259 GGGAAAATCT
*
81682269 AATGCAAATGATGTAATGC
1 AATGCAAATGATGGAATGC
*
81682288 AATGCAAATGCATGGGATG-
1 AATGCAAATG-ATGGAATGC
81682307 AATGCAAA
1 AATGCAAA
81682315 GGAAAGAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (19 bp):
AATGCAAATGATGGAATGC
Found at i:81685815 original size:12 final size:12
Alignment explanation
Indices: 81685787--81685819 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
81685777 TACTGATGAC
81685787 GTTGTCTTTGCTT
1 GTTGT-TTTGCTT
81685800 -TTGTTTTGCTT
1 GTTGTTTTGCTT
81685811 GTTGTTTTG
1 GTTGTTTTG
81685820 GTTTTGCAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 7 0.37
12 12 0.63
ACGTcount: A:0.00, C:0.09, G:0.24, T:0.67
Consensus pattern (12 bp):
GTTGTTTTGCTT
Found at i:81686165 original size:20 final size:21
Alignment explanation
Indices: 81686135--81686183 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
81686125 ATAAAATAAT
*
81686135 AAACAAAAGTAAAATAAAAAG
1 AAACAAAAGTAAAAGAAAAAG
*
81686156 AAAC-AAAGTAAAAGAAACAG
1 AAACAAAAGTAAAAGAAAAAG
*
81686176 AAAAAAAA
1 AAACAAAA
81686184 CAGAGAAGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.78, C:0.06, G:0.10, T:0.06
Consensus pattern (21 bp):
AAACAAAAGTAAAAGAAAAAG
Found at i:81686632 original size:17 final size:18
Alignment explanation
Indices: 81686610--81686645 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
81686600 TAGATGAGTT
81686610 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
81686627 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
81686645 A
1 A
81686646 CATAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:81697158 original size:13 final size:14
Alignment explanation
Indices: 81697116--81697160 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
81697106 TAATAATGAT
81697116 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
81697131 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
81697144 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
81697157 TAAA
1 TAAA
81697161 ATAAAAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:81699091 original size:20 final size:20
Alignment explanation
Indices: 81699063--81699111 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
81699053 CCCATGGCCT
* **
81699063 GGCCCCACGGCCATGTTCCA
1 GGCCACACGGCCATGCCCCA
81699083 GGCCACACGGCCATGCCCCA
1 GGCCACACGGCCATGCCCCA
81699103 GGCCACACG
1 GGCCACACG
81699112 AGCGTGTACC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.18, C:0.47, G:0.27, T:0.08
Consensus pattern (20 bp):
GGCCACACGGCCATGCCCCA
Found at i:81700838 original size:30 final size:30
Alignment explanation
Indices: 81700798--81700857 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
81700788 ATAGATCCTG
*
81700798 GATCATCGCATTCCTATGTTAATACAAAAC
1 GATCATCGCATTCCTATATTAATACAAAAC
*
81700828 GATCGTCGCATTCCTATATTAATACAAAAC
1 GATCATCGCATTCCTATATTAATACAAAAC
81700858 TAGTTGAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.30
Consensus pattern (30 bp):
GATCATCGCATTCCTATATTAATACAAAAC
Found at i:81703109 original size:41 final size:41
Alignment explanation
Indices: 81702902--81703098 Score: 308
Period size: 41 Copynumber: 4.8 Consensus size: 41
81702892 TTTATCGTTA
* * * * *
81702902 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAACGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
81702943 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
81702984 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
81703025 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
81703066 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
81703099 AAGAGCCGGT
Statistics
Matches: 147, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 142 0.97
42 2 0.01
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:81703356 original size:30 final size:32
Alignment explanation
Indices: 81703317--81703390 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 32
81703307 ATGTATATAT
81703317 ATATATA-TGT-TGCATTCGGCATAGGTGAAC
1 ATATATAGTGTATGCATTCGGCATAGGTGAAC
*
81703347 ATATTTATGTGTATGCATTCGGCATAGGTGAA-
1 ATATATA-GTGTATGCATTCGGCATAGGTGAAC
81703379 A-ATA-AGTGTATG
1 ATATATAGTGTATG
81703391 TATCTATGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 7 0.18
30 7 0.18
31 2 0.05
32 4 0.10
33 19 0.49
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.35
Consensus pattern (32 bp):
ATATATAGTGTATGCATTCGGCATAGGTGAAC
Found at i:81703364 original size:33 final size:36
Alignment explanation
Indices: 81703327--81703410 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 36
81703317 ATATATATGT
* * *
81703327 TGCATTCGGCATAGGTGAACAT-A-TTTATG-TGTA
1 TGCATTCGGCATAGGTGAAAATAAGTGTATGATCTA
81703360 TGCATTCGGCATAGGTGAAAATAAGTGTATGTATCTA
1 TGCATTCGGCATAGGTGAAAATAAGTGTATG-ATCTA
81703397 TGCATTCGGCATAG
1 TGCATTCGGCATAG
81703411 ATGGGTATAG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
33 21 0.48
34 1 0.02
35 5 0.11
37 17 0.39
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (36 bp):
TGCATTCGGCATAGGTGAAAATAAGTGTATGATCTA
Found at i:81707413 original size:13 final size:14
Alignment explanation
Indices: 81707371--81707415 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
81707361 TAATAATGAT
81707371 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
81707386 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
81707399 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
81707412 TAAA
1 TAAA
81707416 ATAAAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:81709126 original size:4 final size:4
Alignment explanation
Indices: 81709117--81709145 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
81709107 TAAGAGGTAT
81709117 TGAA TGAA TGAA TGAA TGAA TGAA TGAA T
1 TGAA TGAA TGAA TGAA TGAA TGAA TGAA T
81709146 ATTTGCTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28
Consensus pattern (4 bp):
TGAA
Found at i:81717995 original size:24 final size:24
Alignment explanation
Indices: 81717949--81717995 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
81717939 ATATCTATCT
* *
81717949 ATATAGTGCTATTAATTTGAAAAC
1 ATATAGTGCAATTAAATTGAAAAC
81717973 ATATAGTGCAATTAGAATT-AAAA
1 ATATAGTGCAATTA-AATTGAAAA
81717996 TATGAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (24 bp):
ATATAGTGCAATTAAATTGAAAAC
Found at i:81742174 original size:28 final size:29
Alignment explanation
Indices: 81742143--81742202 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
81742133 AAAGTGATTT
* *
81742143 TTGACAAAAATGTTAATT-AGGGATTAAA
1 TTGACAAAAATATAAATTGAGGGATTAAA
* * *
81742171 TTGAGAAAAGTATAAATTGAGGGGTTAAA
1 TTGACAAAAATATAAATTGAGGGATTAAA
81742200 TTG
1 TTG
81742203 TGAAATAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.43, C:0.02, G:0.23, T:0.32
Consensus pattern (29 bp):
TTGACAAAAATATAAATTGAGGGATTAAA
Found at i:81745906 original size:31 final size:29
Alignment explanation
Indices: 81745865--81745941 Score: 91
Period size: 30 Copynumber: 2.6 Consensus size: 29
81745855 GGTGCAAAAC
* *
81745865 TTTGTTCAATTCTATAAATGAAATTTTGAT
1 TTTGTTCAATTGTATAAAT-AAACTTTGAT
* *
81745895 TTTAGTTCAATTGTACACATAAACTTTGAT
1 TTT-GTTCAATTGTATAAATAAACTTTGAT
81745925 TTTGATTCAATTGTATA
1 TTTG-TTCAATTGTATA
81745942 GCTTTTTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 1 0.03
30 26 0.65
31 13 0.32
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.48
Consensus pattern (29 bp):
TTTGTTCAATTGTATAAATAAACTTTGAT
Found at i:81754774 original size:7 final size:7
Alignment explanation
Indices: 81754762--81754796 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
81754752 AGCCTGTCCT
81754762 CTCTCTA
1 CTCTCTA
81754769 CTCTCTA
1 CTCTCTA
81754776 CTCTCTA
1 CTCTCTA
81754783 CTCTCTA
1 CTCTCTA
81754790 CT-TCTA
1 CTCTCTA
81754796 C
1 C
81754797 AACTATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.14, C:0.43, G:0.00, T:0.43
Consensus pattern (7 bp):
CTCTCTA
Found at i:81758009 original size:2 final size:2
Alignment explanation
Indices: 81758002--81758034 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
81757992 TTTAGACATC
81758002 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
81758035 CACCTGCTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:81759687 original size:27 final size:27
Alignment explanation
Indices: 81759649--81759706 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
81759639 TAAAATAAGG
*
81759649 GTGGAGGGTACCCCAAAGGTGGCACCA
1 GTGGAGGGTACCCCAAAGGCGGCACCA
*
81759676 GTGGAGGGTACCCCACAGGCGGCACCA
1 GTGGAGGGTACCCCAAAGGCGGCACCA
81759703 GTGG
1 GTGG
81759707 TGCCTTTCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.22, C:0.28, G:0.40, T:0.10
Consensus pattern (27 bp):
GTGGAGGGTACCCCAAAGGCGGCACCA
Found at i:81759828 original size:17 final size:17
Alignment explanation
Indices: 81759808--81759841 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81759798 AGAAGATAGA
*
81759808 AAGAAAGAAAGGAGAAG
1 AAGAAAGAAAAGAGAAG
81759825 AAGAAAGAAAAGAGAAG
1 AAGAAAGAAAAGAGAAG
81759842 GTAATTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (17 bp):
AAGAAAGAAAAGAGAAG
Found at i:81764302 original size:147 final size:143
Alignment explanation
Indices: 81763979--81765152 Score: 1520
Period size: 147 Copynumber: 8.1 Consensus size: 143
81763969 TATTTTAGTA
*
81763979 TTTATTTTATTTTCAGATTTTATTTTTTAAAATATATTATTTTCGTATTTTA-TTTTTATATTAT
1 TTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
* * *
81764043 TTTAGTACATAATGTTTCCAATGTACTATTTTTGTTTCTTTTATATTAATTTAATAAAAAACTCT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAG-TT-TTTTATATTAATTTAATAAAAAACTCT
**
81764108 GATTTTGACAGTTTGTTTT
129 GATTTTG---GCCT-TTTT
* * * *
81764127 TTTATTTTATTCTCAGATTTTACTTTTTAAAATAAACTATTTTCATATTTTATTTTTTATATTAT
1 TTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
* * *
81764192 TTTAGTATATAATGTTCCAAATGTATCATTTTAGTTTTTTATATTAATTTAATAAAAAACTCTGA
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTATATTAATTTAATAAAAAACTCTGA
81764257 TTTTGGCCGTTTATTT
131 TTTTGGCC--TT-TTT
*
81764273 TTTATTTTATTTTTAGATTTTATTTTTTTAAAATATACTATTTTCGTATTTTATGTTTTTTATAT
1 TTTATTTTATTTTCAGATTTTA-TTTTTTAAAATATACTATTTTCGTATTTTA--TTTTTTATAT
* * *
81764338 TATTTTAGTACATAATGTTTAAAATGTATTATTTTAGTTTTTTTATATTAATATAGAAAAAAAAA
63 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAG-TTTTTTATATTAAT-T-TAATAAAAAA
*
81764403 CTCTGATTTTGGCCCTTTT
125 CTCTGATTTTGGCCTTTTT
* * * *
81764422 ATT-TTTT-TTTT-GGATTTTATTTTTCAAAATATACTATTTTCTTATTTTATTTTTTATATTAG
1 TTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTA-
* * *
81764484 TTTTA-TACATAATGTTTC--ATGTATTATTTTAGTTTTTTATATTAATTTAGTAAAAATCTGTG
65 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTATATTAATTTAATAAAAAACTCTG
*
81764546 ATTTTGGCCGTTTTA
130 ATTTTGGCC-TTTTT
* *
81764561 TTTATTTTGTTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATTA
1 TTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA-TTTTTTATATTA
*
81764626 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTATATTAATTT-AGAAAAAACTCTG
65 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTATATTAATTTAATAAAAAACTCTG
81764690 ATTTTGGCCTTTTT
130 ATTTTGGCCTTTTT
* * * *
81764704 TAT-TTTTATTTTCAGATTTTATTTTTTAAGATATATTATTTTCGTATTTT-GTTTTTATATTAT
1 TTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
* * *
81764767 TTTAGTACATAATGTTTC--ATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAATCTGTG
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAG-TTTTTTATATTAATTTAATAAAAAACTCTG
*
81764830 GTTTTGGCCTTTTT
130 ATTTTGGCCTTTTT
* * *
81764844 TTTATTTTGTTTTCGGATTTT-TTATTTTAAAATATACTATTTTTGTATTTTATTTTTTTATATT
1 TTTATTTTATTTTCAGATTTTATT-TTTTAAAATATACTATTTTCGTATTTTA-TTTTTTATATT
* * *
81764908 ATTTTTGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTATATTAATTTAGTAAAAAATTCT
64 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTATATTAATTTAATAAAAAACTCT
81764973 GATTTTGGCCGTTTGTTT
129 GATTTTGGCC--TT-TTT
* * *
81764991 TTTATTTTATTTTC-GAATTTTATTTTTCAAAATATATTA-TTTCATATTTTATTTTTT-TATTA
1 TTTATTTTATTTTCAG-ATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTA
* * * *
81765053 TTTTAGTACATAACGTTTCATATGTATTATTTTAGTATATTTATATTAATTTAGTAAAAAAACTC
65 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGT-TTTTTATATTAATTTAAT-AAAAAACTC
81765118 TGATTTTGGCC--TTT
128 TGATTTTGGCCTTTTT
*
81765132 TTTATTTTATTTTCGGATTTT
1 TTTATTTTATTTTCAGATTTT
81765153 TTAAAATATA
Statistics
Matches: 913, Mismatches: 78, Indels: 77
0.85 0.07 0.07
Matches are distributed among these distances:
138 33 0.04
139 22 0.02
140 74 0.08
141 79 0.09
142 85 0.09
143 84 0.09
144 97 0.11
145 96 0.11
146 63 0.07
147 99 0.11
148 55 0.06
149 88 0.10
150 15 0.02
151 1 0.00
152 22 0.02
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (143 bp):
TTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTATATTAATTTAATAAAAAACTCTGA
TTTTGGCCTTTTT
Found at i:81764794 original size:283 final size:287
Alignment explanation
Indices: 81763977--81765152 Score: 1575
Period size: 283 Copynumber: 4.1 Consensus size: 287
81763967 TATATTTTAG
* *
81763977 TATTTATTTTATTTTCAGATTTTATTTTTTAAAATATATTATTTTCGTATTTTA--TTTTTATAT
1 TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATAT
* * *
81764040 TATTTTAGTACATAATGTTTCCAATGTACTATTTTTGTTTCTTTTATATTAATTTA-ATAAAAAA
66 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTT-TTTTATATTAATTTAGA-AAAAAA
** * * *
81764104 CTCTGATTTTGACAGTTTGTTTTTTTATTTTATTCTCAGATTTTACTTTTT-AAAATAAACTATT
129 CTCTGATTTTG---GCCT-TTTTTATATTTTATTTTCAGATTTTA-TTTTTCAAAATATACTATT
* * *
81764168 TTCATATTTTATTTTTTATATTATTTTAGTATATAATGTTCCAAATGTATCATTTTAGTTTTTTA
189 TTCATATTTTATTTTTTATATTATTTTAGTACATAATGTTTC-AATGTATTATTTTAGTTTTTTA
*
81764233 TATTAATTTAATAAAAAACTCTGATTTTGGCCGTTTAT
253 TATTAATTTAGTAAAAAACTCTGATTTTGGCC--TT-T
* **
81764271 TTTTTATTTTATTTTTAGATTTTATTTTTTTAAAATATACTATTTTCGTATTTTATGTTTTTTAT
1 TATTTATTTTATTTTCGGATTTTA-TTTTTTAAAATATACTATTTTCGTATTTTAT-TTTTTTAT
* *
81764336 ATTATTTTAGTACATAATGTTTAAAATGTATTATTTTAGTTTTTTTATATTAATATAGAAAAAAA
64 ATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAG--AAAAA
* **
81764401 AACTCTGATTTTGGCC-CTTTTAT-TTTT-TTTTTGGATTTTATTTTTCAAAATATACTATTTTC
127 AACTCTGATTTTGGCCTTTTTTATATTTTATTTTCAGATTTTATTTTTCAAAATATACTATTTTC
*
81764463 TTATTTTATTTTTTATATTAGTTTTA-TACATAATGTTTC-ATGTATTATTTTAGTTTTTTATAT
192 ATATTTTATTTTTTATATTA-TTTTAGTACATAATGTTTCAATGTATTATTTTAGTTTTTTATAT
* *
81764526 TAATTTAGTAAAAATCTGTGATTTTGGCCGTTT
256 TAATTTAGTAAAAAACTCTGATTTTGGCC-TTT
*
81764559 TATTTATTTTGTTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATAT
1 TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATAT
81764624 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAG-TTTTTTATATTAATTTAG-AAAAAACT
66 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAACT
* * * *
81764687 CTGATTTTGGCCTTTTTTAT-TTTTATTTTCAGATTTTATTTTTTAAGATATATTATTTTCGTAT
131 CTGATTTTGGCCTTTTTTATATTTTATTTTCAGATTTTATTTTTCAAAATATACTATTTTCATAT
*
81764751 TTT-GTTTTTATATTATTTTAGTACATAATGTTTC-ATGTATTATTTTAGTTTTTTTATATTAAT
196 TTTATTTTTTATATTATTTTAGTACATAATGTTTCAATGTATTATTTTAG-TTTTTTATATTAAT
* * *
81764814 TTAGTAAAAATCTGTGGTTTTGGCCTTT
260 TTAGTAAAAAACTCTGATTTTGGCCTTT
* * *
81764842 TTTTTATTTTGTTTTCGGATTTT-TTATTTTAAAATATACTATTTTTGTATTTTATTTTTTTATA
1 TATTTATTTTATTTTCGGATTTTATT-TTTTAAAATATACTATTTTCGTATTTTATTTTTTTATA
* * *
81764906 TTATTTTTGTACATAATGTTTCAAATGTATTATTTTAG-TTTTTTATATTAATTTAGTAAAAAAT
65 TTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAC
* *
81764970 TCTGATTTTGGCCGTTTGTTTTTTATTTTATTTTC-GAATTTTATTTTTCAAAATATATTA-TTT
130 TCTGATTTTGGCC--TT-TTTTATATTTTATTTTCAG-ATTTTATTTTTCAAAATATACTATTTT
* *
81765033 CATATTTTATTTTTT-TATTATTTTAGTACATAACGTTTCATATGTATTATTTTAGTATATTTAT
191 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCA-ATGTATTATTTTAGT-TTTTTAT
81765097 ATTAATTTAGTAAAAAAACTCTGATTTTGGCC-TT
254 ATTAATTTAGT-AAAAAACTCTGATTTTGGCCTTT
81765131 T-TTTATTTTATTTTCGGATTTT
1 TATTTATTTTATTTTCGGATTTT
81765153 TTAAAATATA
Statistics
Matches: 803, Mismatches: 54, Indels: 56
0.88 0.06 0.06
Matches are distributed among these distances:
282 27 0.03
283 165 0.21
284 93 0.12
285 17 0.02
286 48 0.06
287 70 0.09
288 78 0.10
289 36 0.04
290 66 0.08
291 5 0.01
292 55 0.07
293 9 0.01
294 27 0.03
295 29 0.04
296 1 0.00
297 14 0.02
298 45 0.06
299 17 0.02
300 1 0.00
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (287 bp):
TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATAT
TATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAACT
CTGATTTTGGCCTTTTTTATATTTTATTTTCAGATTTTATTTTTCAAAATATACTATTTTCATAT
TTTATTTTTTATATTATTTTAGTACATAATGTTTCAATGTATTATTTTAGTTTTTTATATTAATT
TAGTAAAAAACTCTGATTTTGGCCTTT
Found at i:81764899 original size:13 final size:13
Alignment explanation
Indices: 81764876--81764916 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
81764866 TATTTTAAAA
*
81764876 TATACTATTTTTG
1 TATATTATTTTTG
* *
81764889 TATTTTATTTTTT
1 TATATTATTTTTG
81764902 TATATTATTTTTG
1 TATATTATTTTTG
81764915 TA
1 TA
81764917 CATAATGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (13 bp):
TATATTATTTTTG
Done.