Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 244 of 311
Found at i:81765613 original size:23 final size:23
Alignment explanation
Indices: 81765583--81765629 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
81765573 AAATATTACC
81765583 TTTTTTCCTTCCCTCCCTCTTCT
1 TTTTTTCCTTCCCTCCCTCTTCT
81765606 TTTTTTCCTTCCCTCCCTCTTCT
1 TTTTTTCCTTCCCTCCCTCTTCT
81765629 T
1 T
81765630 CTTCTTCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTTTTCCTTCCCTCCCTCTTCT
Found at i:81765653 original size:6 final size:6
Alignment explanation
Indices: 81765643--81765679 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
81765633 CTTCTCCTTC
* *
81765643 TCTTTT TCTTTC TCTTTC TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT T
81765680 TCTTCCCTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
TCTTTT
Found at i:81765668 original size:14 final size:13
Alignment explanation
Indices: 81765640--81765682 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 13
81765630 CTTCTTCTCC
*
81765640 TTCTCTTT-TTCT
1 TTCTCTTTCTTTT
81765652 TTCTCTTTCTCTTT
1 TTCTCTTTCT-TTT
*
81765666 TTCTTTTTCTTTT
1 TTCTCTTTCTTTT
81765679 TTCT
1 TTCT
81765683 TCCCTCACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
12 8 0.30
13 8 0.30
14 11 0.41
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TTCTCTTTCTTTT
Found at i:81765676 original size:18 final size:18
Alignment explanation
Indices: 81765634--81765677 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
81765624 CTTCTTCTTC
*
81765634 TTCTCCTTCTCTTTTTCT
1 TTCTCTTTCTCTTTTTCT
81765652 TTCTCTTTCTCTTTTTCT
1 TTCTCTTTCTCTTTTTCT
*
81765670 TTTTCTTT
1 TTCTCTTT
81765678 TTTCTTCCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (18 bp):
TTCTCTTTCTCTTTTTCT
Found at i:81765770 original size:6 final size:6
Alignment explanation
Indices: 81765700--81765770 Score: 56
Period size: 6 Copynumber: 12.2 Consensus size: 6
81765690 CCAATGCCGC
* * * * * * *
81765700 CTCCTC CTCCTC CTCCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT
1 CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT
*
81765748 CT-CTT CTCTTT CT-CTT CTCCTT C
1 CTCCTT CTCCTT CTCCTT CTCCTT C
81765771 CCCCTTTCTT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
5 9 0.15
6 50 0.85
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (6 bp):
CTCCTT
Found at i:81765787 original size:3 final size:3
Alignment explanation
Indices: 81765715--81765754 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
81765705 CCTCCTCCTC
81765715 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C-T CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
81765755 CTTTCTCTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:81765952 original size:27 final size:27
Alignment explanation
Indices: 81765911--81765963 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
81765901 AGGAGTCAGC
*
81765911 GGTGCCGCCTGTGGGGTACCCTCCACT
1 GGTGCCGCCTATGGGGTACCCTCCACT
*
81765938 GGTGCTGCCTATGGGGTACCCTCCAC
1 GGTGCCGCCTATGGGGTACCCTCCAC
81765964 CCATATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.09, C:0.36, G:0.32, T:0.23
Consensus pattern (27 bp):
GGTGCCGCCTATGGGGTACCCTCCACT
Found at i:81766726 original size:5 final size:5
Alignment explanation
Indices: 81766716--81766910 Score: 347
Period size: 5 Copynumber: 39.0 Consensus size: 5
81766706 AATAATTAAG
81766716 TATAT TATAT TATAT TATAT TATAT TATA- TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
81766765 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* *
81766815 TATAT TATAT TATAT TATAT TATAT TGTAT TATAT TATAT TGTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
*
81766865 TATAT TATAT TATAT TATAT TATAT TATAT TATAG TATTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT
81766911 ATAAAAGAAA
Statistics
Matches: 182, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
4 4 0.02
5 174 0.96
6 4 0.02
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:81766913 original size:15 final size:14
Alignment explanation
Indices: 81766686--81766913 Score: 264
Period size: 15 Copynumber: 15.5 Consensus size: 14
81766676 ATTGATTAAA
81766686 ATATATATATATATT
1 ATATATAT-TATATT
* *
81766701 -TATTTAATA-ATT
1 ATATATATTATATT
81766713 A-AGTATATTATATT
1 ATA-TATATTATATT
81766727 ATATTATATTATATT
1 ATA-TATATTATATT
81766742 ATATATATTATATT
1 ATATATATTATATT
81766756 ATATTATATTATATT
1 ATA-TATATTATATT
81766771 ATATTATATTATATT
1 ATA-TATATTATATT
81766786 ATATTATATTATATT
1 ATA-TATATTATATT
81766801 ATATTATATTATATT
1 ATA-TATATTATATT
81766816 ATATTATATTATATT
1 ATA-TATATTATATT
*
81766831 ATATTATATTGTATT
1 ATA-TATATTATATT
*
81766846 ATATTATATTGTATT
1 ATA-TATATTATATT
81766861 ATATTATATTATATT
1 ATA-TATATTATATT
81766876 ATATTATATTATATT
1 ATA-TATATTATATT
*
81766891 ATATTATAGTATTATT
1 ATA-TATATTA-TATT
81766907 ATATATA
1 ATATATA
81766914 AAAGAAACAA
Statistics
Matches: 199, Mismatches: 8, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
12 4 0.02
13 7 0.04
14 23 0.12
15 158 0.79
16 7 0.04
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (14 bp):
ATATATATTATATT
Found at i:81767611 original size:6 final size:6
Alignment explanation
Indices: 81767592--81767622 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
81767582 GTGTGTCGAA
*
81767592 TACTGT TACCGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT T
81767623 TCGGATTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:81769694 original size:20 final size:22
Alignment explanation
Indices: 81769669--81769717 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
81769659 TGTTTATAAA
* *
81769669 TTAAAATATATTTAAT-AA-TT
1 TTAAAATAAATTAAATAAATTT
*
81769689 TTAAAAAAAATTAAATAAATTT
1 TTAAAATAAATTAAATAAATTT
81769711 TTAAAAT
1 TTAAAAT
81769718 TTCCGTTAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 13 0.57
21 2 0.09
22 8 0.35
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TTAAAATAAATTAAATAAATTT
Found at i:81772915 original size:22 final size:21
Alignment explanation
Indices: 81772885--81772930 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
81772875 TTCCTTCAAT
81772885 TTTCGTTTTCAATTCTGTGTTC
1 TTTCGTTTTCAATTCTGT-TTC
* * *
81772907 TTTCTTTTTCTATTTTGTTTC
1 TTTCGTTTTCAATTCTGTTTC
81772928 TTT
1 TTT
81772931 ATTTATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.07, C:0.15, G:0.09, T:0.70
Consensus pattern (21 bp):
TTTCGTTTTCAATTCTGTTTC
Found at i:81772927 original size:17 final size:17
Alignment explanation
Indices: 81772907--81772939 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
81772897 TTCTGTGTTC
81772907 TTTCTTT-TTCTATTTTG
1 TTTCTTTATT-TATTTTG
81772924 TTTCTTTATTTATTTT
1 TTTCTTTATTTATTTT
81772940 AACTATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.09, C:0.09, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTCTTTATTTATTTTG
Found at i:81772968 original size:8 final size:8
Alignment explanation
Indices: 81772943--81772992 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
81772933 TTATTTTAAC
81772943 TATTATAT
1 TATTATAT
*
81772951 TATTCT-T
1 TATTATAT
81772958 TATTATAT
1 TATTATAT
*
81772966 TATTAAAT
1 TATTATAT
*
81772974 TATTATAA
1 TATTATAT
*
81772982 TAATATAT
1 TATTATAT
81772990 TAT
1 TAT
81772993 ATGTTAAATA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
7 6 0.18
8 27 0.82
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (8 bp):
TATTATAT
Found at i:81779570 original size:44 final size:45
Alignment explanation
Indices: 81779521--81779616 Score: 178
Period size: 44 Copynumber: 2.2 Consensus size: 45
81779511 TTTTAATTAA
81779521 AATATTCATAAGTCAACACAATACCACAATATCAATACTTACC-T
1 AATATTCATAAGTCAACACAATACCACAATATCAATACTTACCTT
81779565 AATATTCATAAGTCAACACAATACCACAATATCAATACTTACCTT
1 AATATTCATAAGTCAACACAATACCACAATATCAATACTTACCTT
81779610 AAT-TTCA
1 AATATTCA
81779617 ATAGCCATAC
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
44 47 0.92
45 4 0.08
ACGTcount: A:0.45, C:0.24, G:0.02, T:0.29
Consensus pattern (45 bp):
AATATTCATAAGTCAACACAATACCACAATATCAATACTTACCTT
Found at i:81780366 original size:16 final size:16
Alignment explanation
Indices: 81780322--81780373 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
81780312 ATATTTTAAC
81780322 TATTATATTATTAAAT-
1 TATTATA-TATTAAATA
81780338 TATTATA-A-T-AATA
1 TATTATATATTAAATA
81780351 TATTATATATTAAATA
1 TATTATATATTAAATA
*
81780367 TCTTATA
1 TATTATA
81780374 CTTAAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
12 3 0.10
13 8 0.26
14 2 0.06
15 1 0.03
16 17 0.55
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTATATATTAAATA
Found at i:81781942 original size:46 final size:44
Alignment explanation
Indices: 81781838--81781945 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
81781828 TGTCTTTGAC
** * * *
81781838 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
81781882 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
81781928 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
81781946 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:81787412 original size:41 final size:41
Alignment explanation
Indices: 81787355--81787437 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
81787345 CGAGTATGAG
*
81787355 TTGTATTTGAATATTAGTATAGAACTCTGTATTAACTGTTA
1 TTGTATTTGAATATTAGTATAGAACTATGTATTAACTGTTA
81787396 TTGTATTTGAATATTAGTATAGAACTATGTATTAACTGTTA
1 TTGTATTTGAATATTAGTATAGAACTATGTATTAACTGTTA
81787437 T
1 T
81787438 GTGAAGAATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.47
Consensus pattern (41 bp):
TTGTATTTGAATATTAGTATAGAACTATGTATTAACTGTTA
Found at i:81796863 original size:3 final size:3
Alignment explanation
Indices: 81796855--81796881 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
81796845 ACAAGCTCTC
81796855 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
81796882 GATAATGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:81797509 original size:42 final size:42
Alignment explanation
Indices: 81797458--81797577 Score: 179
Period size: 42 Copynumber: 2.9 Consensus size: 42
81797448 AACTGTATAC
81797458 TCTCAATGTGGA-TAAATATTTAGTTTAGTTAGCACGGTTGTT
1 TCTCAATGTGGATTAAAT-TTTAGTTTAGTTAGCACGGTTGTT
* *
81797500 TCTTAATGTGGATTAAATTTTAGTTTAGTTAGTACGGTTGTT
1 TCTCAATGTGGATTAAATTTTAGTTTAGTTAGCACGGTTGTT
* * *
81797542 TCTCAATGTGAATTAAATTTTAGTTTAATTAACACG
1 TCTCAATGTGGATTAAATTTTAGTTTAGTTAGCACG
81797578 TTCGTTATGA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
42 65 0.93
43 5 0.07
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.45
Consensus pattern (42 bp):
TCTCAATGTGGATTAAATTTTAGTTTAGTTAGCACGGTTGTT
Found at i:81801298 original size:102 final size:101
Alignment explanation
Indices: 81801187--81801391 Score: 374
Period size: 102 Copynumber: 2.0 Consensus size: 101
81801177 ATCTTCTAAC
81801187 TTTTCACCACCAAGGTTTTGTTTAGCATTGCTCATAGAGGTGGAAAAGCACTTTTTGACAGCATA
1 TTTTCACCACCAAGGTTTTGTTTAGCATTGCTCATAGAGGTGGAAAAGCACTTTTTGACAGCATA
* *
81801252 AGCAATGCCAAACAATCAGCTTTTAACATCAAATTAA
66 AGCAATGCCAAACAATCAGC-TTTAAAATCAAAATAA
*
81801289 TTTTCACCACTAAGGTTTTGTTTAGCATTGCTCATAGAGGTGGAAAAGCACTTTTTGACAGCATA
1 TTTTCACCACCAAGGTTTTGTTTAGCATTGCTCATAGAGGTGGAAAAGCACTTTTTGACAGCATA
81801354 AGCAATGCCAAACAATCAGCTTTAAAATCAAAATAA
66 AGCAATGCCAAACAATCAGCTTTAAAATCAAAATAA
81801390 TT
1 TT
81801392 GAAAAAAGCT
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
101 16 0.16
102 84 0.84
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31
Consensus pattern (101 bp):
TTTTCACCACCAAGGTTTTGTTTAGCATTGCTCATAGAGGTGGAAAAGCACTTTTTGACAGCATA
AGCAATGCCAAACAATCAGCTTTAAAATCAAAATAA
Found at i:81807201 original size:21 final size:20
Alignment explanation
Indices: 81807160--81807202 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
81807150 TATAATTTTA
** *
81807160 TTTATATTTTTCTGTATTTT
1 TTTATATTTTTCAATAGTTT
81807180 TTTATAATTTTTCAATAGTTT
1 TTTAT-ATTTTTCAATAGTTT
81807201 TT
1 TT
81807203 AAGGGTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTATATTTTTCAATAGTTT
Found at i:81808463 original size:19 final size:19
Alignment explanation
Indices: 81808426--81808464 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
81808416 AATTTATTAT
**
81808426 TATATTTATAATTGTAATA
1 TATATTTATAATTAAAATA
*
81808445 TATATTTATTATTAAAATA
1 TATATTTATAATTAAAATA
81808464 T
1 T
81808465 TAATATAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
TATATTTATAATTAAAATA
Found at i:81815501 original size:2 final size:2
Alignment explanation
Indices: 81815496--81815523 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
81815486 TTTTTTAAAA
81815496 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81815524 TAAATAAGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81820336 original size:40 final size:37
Alignment explanation
Indices: 81820291--81820384 Score: 100
Period size: 40 Copynumber: 2.5 Consensus size: 37
81820281 ACCTGAATGG
*
81820291 CGACCAACGCCTCATCGGAT-AGTTCGAAGTAAATAAGTGA
1 CGACCAACGCCTCATCGGATAAG-CCGAAGT--A-AAGTGA
* * * *
81820331 CGACCAACGTCTCATTGGCTAAGCCGAAGTAAAGTGG
1 CGACCAACGCCTCATCGGATAAGCCGAAGTAAAGTGA
81820368 CGACCAACGCCTCATCG
1 CGACCAACGCCTCATCG
81820385 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
37 20 0.43
38 1 0.02
40 23 0.50
41 2 0.04
ACGTcount: A:0.31, C:0.28, G:0.23, T:0.18
Consensus pattern (37 bp):
CGACCAACGCCTCATCGGATAAGCCGAAGTAAAGTGA
Found at i:81821568 original size:3 final size:3
Alignment explanation
Indices: 81821560--81821584 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
81821550 ATAGTATGAC
81821560 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
81821585 GTAAATATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:81824088 original size:10 final size:10
Alignment explanation
Indices: 81824073--81824097 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81824063 TCTTTCTTTC
81824073 TTTTTTTATT
1 TTTTTTTATT
81824083 TTTTTTTATT
1 TTTTTTTATT
81824093 TTTTT
1 TTTTT
81824098 AACATTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:81831243 original size:12 final size:12
Alignment explanation
Indices: 81831223--81831253 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
81831213 ATTATAAAAC
81831223 ATAATAATCATA
1 ATAATAATCATA
*
81831235 ATTATAATCATA
1 ATAATAATCATA
81831247 ATAATAA
1 ATAATAA
81831254 AATTTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATAATCATA
Found at i:81841100 original size:26 final size:26
Alignment explanation
Indices: 81841071--81841180 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
81841061 CATGAACTTC
* *
81841071 TTATCATGAAACATTTACATAACCCA
1 TTATCATGGAACATTTACCTAACCCA
81841097 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
81841123 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
81841149 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
81841175 TTATCA
1 TTATCA
81841181 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:81841745 original size:27 final size:25
Alignment explanation
Indices: 81841703--81841779 Score: 91
Period size: 27 Copynumber: 3.0 Consensus size: 25
81841693 AACTGTTTGG
81841703 TTATTATTATTTATTTTAAGTTTTT
1 TTATTATTATTTATTTTAAGTTTTT
* * **
81841728 TTCTTATATTATTTATTTTAAATCATT
1 TT-AT-TATTATTTATTTTAAGTTTTT
*
81841755 TTATTATTATTTATGTTAAGTTTTT
1 TTATTATTATTTATTTTAAGTTTTT
81841780 ACGTATTATG
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
25 19 0.46
26 2 0.05
27 20 0.49
ACGTcount: A:0.26, C:0.03, G:0.04, T:0.68
Consensus pattern (25 bp):
TTATTATTATTTATTTTAAGTTTTT
Found at i:81841786 original size:27 final size:25
Alignment explanation
Indices: 81841704--81841795 Score: 80
Period size: 27 Copynumber: 3.5 Consensus size: 25
81841694 ACTGTTTGGT
81841704 TATTATTATTTATTTTAAGTTTTTTTC
1 TATTATTATTTATTTTAAG--TTTTTC
* *
81841731 T-TATATTATTTATTTTAAATCATTT-
1 TAT-TATTATTTATTTTAAGT-TTTTC
*
81841756 TATTATTATTTATGTTAAGTTTTTAC
1 TATTATTATTTATTTTAAGTTTTT-C
81841782 GTATTATGTATTTA
1 -TATTAT-TATTTA
81841796 AACTATTATC
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
24 3 0.06
25 17 0.32
26 5 0.09
27 22 0.42
28 6 0.11
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.64
Consensus pattern (25 bp):
TATTATTATTTATTTTAAGTTTTTC
Found at i:81841970 original size:24 final size:24
Alignment explanation
Indices: 81841916--81842085 Score: 84
Period size: 24 Copynumber: 7.1 Consensus size: 24
81841906 GTTTTTGGAC
*
81841916 ATTATTTATTTTAAATTTCCTTATTACAT
1 ATTATTTATTTTAAA-TT-GTT-TT--AT
* *
81841945 ATTATTTATTTTAAACTCTTTTAT
1 ATTATTTATTTTAAATTGTTTTAT
* ** *
81841969 A-T-GTTATTTTAAAGAGTCTTAT
1 ATTATTTATTTTAAATTGTTTTAT
* ** *
81841991 A-TATTT-TATTACTTTG-TATAT
1 ATTATTTATTTTAAATTGTTTTAT
*
81842012 -T-ATTTATTTTAATTTGTTTTACAT
1 ATTATTTATTTTAAATTGTTTT--AT
*
81842036 ATTATTTATTTGAAATTGTTTTAT
1 ATTATTTATTTTAAATTGTTTTAT
* * *
81842060 ATTATTGACTTCAAATTGTTTTAT
1 ATTATTTATTTTAAATTGTTTTAT
81842084 AT
1 AT
81842086 AATATTTTGT
Statistics
Matches: 111, Mismatches: 22, Indels: 21
0.72 0.14 0.14
Matches are distributed among these distances:
20 4 0.04
21 11 0.10
22 24 0.22
23 3 0.03
24 30 0.27
25 1 0.01
26 19 0.17
27 3 0.03
28 1 0.01
29 15 0.14
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.59
Consensus pattern (24 bp):
ATTATTTATTTTAAATTGTTTTAT
Found at i:81842040 original size:26 final size:25
Alignment explanation
Indices: 81842008--81842092 Score: 91
Period size: 26 Copynumber: 3.4 Consensus size: 25
81841998 ATTACTTTGT
* *
81842008 ATATTATTTATTTTAATTTGTTTTA
1 ATATTATTTATTTCAAATTGTTTTA
*
81842033 CATATTATTTATTTGAAATTGTTTT-
1 -ATATTATTTATTTCAAATTGTTTTA
* *
81842058 ATATTATTGACTTCAAATTGTTTTA
1 ATATTATTTATTTCAAATTGTTTTA
*
81842083 TATAATATTT
1 -ATATTATTT
81842093 TGTTGCATAT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
24 21 0.42
26 29 0.58
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.60
Consensus pattern (25 bp):
ATATTATTTATTTCAAATTGTTTTA
Found at i:81845828 original size:19 final size:19
Alignment explanation
Indices: 81845787--81845828 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
81845777 CCTCTTTTTG
* *
81845787 CATTCATTTCATTCATTTG
1 CATTCATTTCATTCATATA
81845806 CATTGCATTTCA-TCATATA
1 CATT-CATTTCATTCATATA
81845825 CATT
1 CATT
81845829 AAGTTTCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.26, C:0.21, G:0.05, T:0.48
Consensus pattern (19 bp):
CATTCATTTCATTCATATA
Found at i:81854352 original size:44 final size:43
Alignment explanation
Indices: 81854261--81854381 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 43
81854251 GTTACCTTAG
* *
81854261 CAAATCTTATCTCCCTGAAGTTGTAGTGAAGCAGATTAAAATCA
1 CAAA-CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCA
* * * * *
81854305 CAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTTA
1 CAAA-CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCA
* * *
81854349 CAAATTTCATCTCTCTTAAGTTGCAGTGGAGCA
1 CAAACTT-ATCTCCCTGAAGTTGCAGTGGAGCA
81854382 AATTGTAGAT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 2 0.03
44 62 0.97
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (43 bp):
CAAACTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCA
Found at i:81855092 original size:5 final size:5
Alignment explanation
Indices: 81855074--81855116 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
81855064 GGATTTCTTG
81855074 TTTAT TTCTAT TTTAT TTTAT TTTAT TTT-T TATT-T TTTAT TTT
1 TTTAT TT-TAT TTTAT TTTAT TTTAT TTTAT T-TTAT TTTAT TTT
81855117 TTAATCTACT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 4 0.11
5 26 0.74
6 5 0.14
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:81855106 original size:7 final size:7
Alignment explanation
Indices: 81855094--81855119 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
81855084 TTTTATTTTA
81855094 TTTTATT
1 TTTTATT
81855101 TTTTATT
1 TTTTATT
81855108 TTTTATT
1 TTTTATT
81855115 TTTTA
1 TTTTA
81855120 ATCTACTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTATT
Found at i:81855966 original size:27 final size:25
Alignment explanation
Indices: 81855924--81856000 Score: 100
Period size: 27 Copynumber: 3.0 Consensus size: 25
81855914 AATTGTTTGG
81855924 TTATTATTATTTATTTTAAGTTTTT
1 TTATTATTATTTATTTTAAGTTTTT
* **
81855949 TTCTTATATTATTTATTTTAAGTCGTT
1 TT-AT-TATTATTTATTTTAAGTTTTT
*
81855976 TTATTATTATTTATGTTAAGTTTTT
1 TTATTATTATTTATTTTAAGTTTTT
81856001 ACGTATTATG
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 20 0.47
26 2 0.05
27 21 0.49
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.68
Consensus pattern (25 bp):
TTATTATTATTTATTTTAAGTTTTT
Found at i:81855998 original size:22 final size:23
Alignment explanation
Indices: 81855955--81855999 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
81855945 TTTTTTCTTA
*
81855955 TATTATTTATTTTAAGTCGTTTTAT
1 TATTATTTATGTTAA--CGTTTTAT
81855980 TATTATTTATGTTAA-GTTTT
1 TATTATTTATGTTAACGTTTT
81856000 TACGTATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
25 14 0.74
ACGTcount: A:0.24, C:0.02, G:0.09, T:0.64
Consensus pattern (23 bp):
TATTATTTATGTTAACGTTTTAT
Found at i:81856007 original size:27 final size:25
Alignment explanation
Indices: 81855925--81856016 Score: 89
Period size: 27 Copynumber: 3.5 Consensus size: 25
81855915 ATTGTTTGGT
81855925 TATTATTATTTATTTTAAGTTTTTTTC
1 TATTATTATTTATTTTAAG--TTTTTC
*
81855952 T-TATATTATTTATTTTAAGTCGTTT-
1 TAT-TATTATTTATTTTAAGT-TTTTC
*
81855977 TATTATTATTTATGTTAAGTTTTTAC
1 TATTATTATTTATTTTAAGTTTTT-C
81856003 GTATTATGTATTTA
1 -TATTAT-TATTTA
81856017 AACTATTATC
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
24 3 0.05
25 18 0.33
26 5 0.09
27 23 0.42
28 6 0.11
ACGTcount: A:0.25, C:0.03, G:0.08, T:0.64
Consensus pattern (25 bp):
TATTATTATTTATTTTAAGTTTTTC
Found at i:81856184 original size:24 final size:24
Alignment explanation
Indices: 81856050--81856299 Score: 111
Period size: 26 Copynumber: 10.0 Consensus size: 24
81856040 TTTTAAAATG
81856050 TTATTTATTTTAAACTT-TTATATATA
1 TTATTTATTTTAAA-TTGTT-T-TATA
** *
81856076 TTATTTATTTTGGATTATTTAAATATA
1 TTATTTATTTTAAATTGTTT---TATA
* * *
81856103 TATATTTTATTTAAAATGTTTTTGTACA
1 T-TA-TTTATTTTAAAT-TGTTT-TATA
*
81856131 TTATTTATTTTAAATTTCCTTTTTACATA
1 TTATTTATTTTAAA-TT--GTTTT--ATA
* *
81856160 TTATTTATTTTAAACTCTTTTATA
1 TTATTTATTTTAAATTGTTTTATA
* * *
81856184 -T-GTTATTTTAAAGTGTCTTATA
1 TTATTTATTTTAAATTGTTTTATA
* * *
81856206 -TATTT-TATT--ACT-TTGTATA
1 TTATTTATTTTAAATTGTTTTATA
*
81856225 TTATTTATTTTAATTTGTTTTACATA
1 TTATTTATTTTAAATTGTTTT--ATA
*
81856251 TTATTTATTTGAAATTGTTTTATA
1 TTATTTATTTTAAATTGTTTTATA
* * *
81856275 TTATTGACTTCAAATTGTTTTATA
1 TTATTTATTTTAAATTGTTTTATA
81856299 T
1 T
81856300 AATATTTTGT
Statistics
Matches: 175, Mismatches: 30, Indels: 40
0.71 0.12 0.16
Matches are distributed among these distances:
19 5 0.03
20 7 0.04
21 3 0.02
22 21 0.12
23 4 0.02
24 31 0.18
25 3 0.02
26 51 0.29
27 10 0.06
28 11 0.06
29 25 0.14
30 4 0.02
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (24 bp):
TTATTTATTTTAAATTGTTTTATA
Found at i:81856204 original size:22 final size:22
Alignment explanation
Indices: 81856164--81856206 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
81856154 TACATATTAT
*
81856164 TTATTTTAAACTCTTTTATATG
1 TTATTTTAAACTCTCTTATATG
* *
81856186 TTATTTTAAAGTGTCTTATAT
1 TTATTTTAAACTCTCTTATAT
81856207 ATTTTATTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.58
Consensus pattern (22 bp):
TTATTTTAAACTCTCTTATATG
Found at i:81856317 original size:91 final size:92
Alignment explanation
Indices: 81856130--81856317 Score: 195
Period size: 91 Copynumber: 2.0 Consensus size: 92
81856120 GTTTTTGTAC
* * * * *
81856130 ATTATTTATTTTAAATTTCCTTTTTACATATTATTTATTTTAAACTCTTTTATATGTTATTTTAA
1 ATTATTTATTTTAAATTT-CGTTTTACATATTATTTATTTGAAACTCTTTTATATATTACTTCAA
* * *
81856195 AGTGTCTTATATATTTTATTACTTTGTAT
65 AGTGTCTTATATATATTATTA-GTTGCAT
* *
81856224 ATTATTTATTTT-AATTT-GTTTTACATATTATTTATTTGAAATTGTTTTATATTATTGACTTCA
1 ATTATTTATTTTAAATTTCGTTTTACATATTATTTATTTGAAACTCTTTTATA-TATT-ACTTCA
* *
81856287 AATTGTTTTATATAATATT-TT-GTTGCAT
64 AAGTGTCTTATAT-ATATTATTAGTTGCAT
81856315 ATT
1 ATT
81856318 CTTCATTTGT
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
91 38 0.48
92 3 0.04
93 22 0.28
94 16 0.20
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (92 bp):
ATTATTTATTTTAAATTTCGTTTTACATATTATTTATTTGAAACTCTTTTATATATTACTTCAAA
GTGTCTTATATATATTATTAGTTGCAT
Found at i:81871245 original size:24 final size:24
Alignment explanation
Indices: 81871227--81871282 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
81871217 GGCTCTCTGA
*
81871227 AGCTTCCTGATATTGGCTCGCTTG
1 AGCTTCCCGATATTGGCTCGCTTG
81871251 AGCTTCCCGATATTGGCTCG-TATG
1 AGCTTCCCGATATTGGCTCGCT-TG
81871275 AGCTTCCC
1 AGCTTCCC
81871283 ATTAATGGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 1 0.03
24 29 0.97
ACGTcount: A:0.14, C:0.29, G:0.23, T:0.34
Consensus pattern (24 bp):
AGCTTCCCGATATTGGCTCGCTTG
Found at i:81871291 original size:24 final size:25
Alignment explanation
Indices: 81871240--81871355 Score: 71
Period size: 24 Copynumber: 4.7 Consensus size: 25
81871230 TTCCTGATAT
*
81871240 TGGCTCGCT-TGAGCTTCCCGA-TA-T
1 TGGCTCG-TATGAGCTTCCC-ATTACA
81871264 TGGCTCGTATGAGCTTCCCATTA-A
1 TGGCTCGTATGAGCTTCCCATTACA
* ** **
81871288 TGGCT-TTCCGGAGCTTCCTGTTACA
1 TGGCTCGT-ATGAGCTTCCCATTACA
* *
81871313 TGGCTCATATGAGCTTCCCATTATA
1 TGGCTCGTATGAGCTTCCCATTACA
* * *
81871338 TGGATCGAAAGAGCTTCC
1 TGGCTCGTATGAGCTTCC
81871356 TGTTTATATG
Statistics
Matches: 71, Mismatches: 16, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
23 3 0.04
24 35 0.49
25 32 0.45
26 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (25 bp):
TGGCTCGTATGAGCTTCCCATTACA
Found at i:81871340 original size:25 final size:25
Alignment explanation
Indices: 81871249--81871340 Score: 75
Period size: 24 Copynumber: 3.8 Consensus size: 25
81871239 TTGGCTCGCT
*
81871249 TGAGCTTCCCGA-TAT-TGGCTCGTA
1 TGAGCTTCCC-ATTATATGGCTCATA
* *
81871273 TGAGCTTCCCATTA-ATGGCT-TTCC
1 TGAGCTTCCCATTATATGGCTCAT-A
* ** *
81871297 GGAGCTTCCTGTTACATGGCTCATA
1 TGAGCTTCCCATTATATGGCTCATA
81871322 TGAGCTTCCCATTATATGG
1 TGAGCTTCCCATTATATGG
81871341 ATCGAAAGAG
Statistics
Matches: 52, Mismatches: 11, Indels: 9
0.72 0.15 0.12
Matches are distributed among these distances:
23 2 0.04
24 28 0.54
25 21 0.40
26 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (25 bp):
TGAGCTTCCCATTATATGGCTCATA
Found at i:81875177 original size:28 final size:29
Alignment explanation
Indices: 81875122--81875189 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 29
81875112 ATTTATAACC
*
81875122 TATTTATTTTAAACTTTATACATATATTA
1 TATTTATTTTAAACTTAATACATATATTA
* *
81875151 T-TTTATTTTAATA-TTAATATATGTATTA
1 TATTTATTTTAA-ACTTAATACATATATTA
*
81875179 TATATATTTTA
1 TATTTATTTTA
81875190 TAATTATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 23 0.70
29 10 0.30
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (29 bp):
TATTTATTTTAAACTTAATACATATATTA
Found at i:81875246 original size:25 final size:24
Alignment explanation
Indices: 81875181--81875290 Score: 70
Period size: 25 Copynumber: 4.6 Consensus size: 24
81875171 ATGTATTATA
*
81875181 TATATTTTA-TA-ATTAT-TTACT
1 TATATTTTATTATATCATATTACT
*
81875202 TATATTTTATTATATTATATTACT
1 TATATTTTATTATATCATATTACT
* *
81875226 TCATATTTT-CTATTATCATATTAAT
1 T-ATATTTTATTA-TATCATATTACT
** *
81875251 ATATATTTTAACACAT-ATCATTACT
1 -TATATTTTATTATATCAT-ATTACT
81875276 TAT-TATTTATTATAT
1 TATAT-TTTATTATAT
81875291 TATGTTTTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 15
0.74 0.11 0.16
Matches are distributed among these distances:
21 9 0.13
22 2 0.03
23 6 0.09
24 20 0.29
25 31 0.44
26 2 0.03
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (24 bp):
TATATTTTATTATATCATATTACT
Found at i:81875300 original size:40 final size:37
Alignment explanation
Indices: 81875256--81875330 Score: 89
Period size: 37 Copynumber: 1.9 Consensus size: 37
81875246 TTAATATATA
81875256 TTTTAACACATATCATTACTTAT-TATTTATTATATTATGT
1 TTTTAACACATA--A-TACTTATATATTTA-TATATTATGT
* *
81875296 TTTTATCACATAATATTTATATATTTATATATTAT
1 TTTTAACACATAATACTTATATATTTATATATTAT
81875331 TTATTATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 14 0.44
38 7 0.22
40 11 0.34
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (37 bp):
TTTTAACACATAATACTTATATATTTATATATTATGT
Found at i:81875578 original size:21 final size:22
Alignment explanation
Indices: 81875544--81875587 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
81875534 TATTTCAAAA
81875544 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAACTATGTT
*
81875565 TTCATGTATT-ATTAATTATGTT
1 TTCAT-TATTAATTAACTATGTT
81875587 T
1 T
81875588 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.59
Consensus pattern (22 bp):
TTCATTATTAATTAACTATGTT
Found at i:81885374 original size:22 final size:22
Alignment explanation
Indices: 81885349--81885392 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
81885339 AGCCGATTCT
81885349 TATGCGAATGTTACTAAGCCAG
1 TATGCGAATGTTACTAAGCCAG
81885371 TATGCGAATGTTACTAAGCCAG
1 TATGCGAATGTTACTAAGCCAG
81885393 CTGTGAGTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (22 bp):
TATGCGAATGTTACTAAGCCAG
Found at i:81886193 original size:16 final size:15
Alignment explanation
Indices: 81886174--81886255 Score: 78
Period size: 16 Copynumber: 5.4 Consensus size: 15
81886164 TTTCAAAAAT
81886174 AAAAAAAAACAAACAG
1 AAAAAAAAA-AAACAG
* *
81886190 AAAATAAAAAAACAA
1 AAAAAAAAAAAACAG
81886205 AAAACAAAAAAAACA-
1 AAAA-AAAAAAAACAG
* *
81886220 AAAAAGAAAGAA-AG
1 AAAAAAAAAAAACAG
*
81886234 AAAAAAAGAAAAAAAG
1 AAAAAAA-AAAAACAG
81886250 AAAAAA
1 AAAAAA
81886256 GAAGAGAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
13 1 0.02
14 12 0.22
15 17 0.31
16 25 0.45
ACGTcount: A:0.85, C:0.06, G:0.07, T:0.01
Consensus pattern (15 bp):
AAAAAAAAAAAACAG
Found at i:81886202 original size:15 final size:15
Alignment explanation
Indices: 81886174--81886255 Score: 83
Period size: 15 Copynumber: 5.3 Consensus size: 15
81886164 TTTCAAAAAT
*
81886174 AAAAAAAAACAAACA
1 AAAAAAAAAAAAACA
* *
81886189 GAAAATAAAAAAACA
1 AAAAAAAAAAAAACA
81886204 AAAAACAAAAAAAACA
1 AAAAA-AAAAAAAACA
* * *
81886220 AAAAAGAAAGAAAGA
1 AAAAAAAAAAAAACA
*
81886235 AAAAAAGAAAAAAAGA
1 AAAAAA-AAAAAAACA
81886251 AAAAA
1 AAAAA
81886256 GAAGAGAAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
15 28 0.51
16 27 0.49
ACGTcount: A:0.85, C:0.06, G:0.07, T:0.01
Consensus pattern (15 bp):
AAAAAAAAAAAAACA
Found at i:81886238 original size:31 final size:29
Alignment explanation
Indices: 81886168--81886268 Score: 103
Period size: 31 Copynumber: 3.2 Consensus size: 29
81886158 TTGAGGTTTC
* * *
81886168 AAAAATAAAAAAAAACAAACAGAAAATAAAA
1 AAAAA-AAAAAAAAA-AAACAAAAAAGAAAG
81886199 AAACAAAAAACAAAAAAAACAAAAAAGAAAG
1 AAA-AAAAAA-AAAAAAAACAAAAAAGAAAG
*
81886230 AAAGAAAAAAAGAAAAAAAGAAAAAAGAAGAG
1 AAA-AAAAAAA-AAAAAAACAAAAAAGAA-AG
81886262 AAAAAAA
1 AAAAAAA
81886269 GAGAAAAATG
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
30 1 0.02
31 48 0.79
32 12 0.20
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (29 bp):
AAAAAAAAAAAAAAAAACAAAAAAGAAAG
Found at i:81886249 original size:20 final size:18
Alignment explanation
Indices: 81886169--81886276 Score: 90
Period size: 21 Copynumber: 5.3 Consensus size: 18
81886159 TGAGGTTTCA
81886169 AAAATAAAAAAAAACAAACAG
1 AAAA-AAAAAAAAA-AAA-AG
*
81886190 AAAATAAAAAAACAAAAAAC
1 AAAA-AAAAAAA-AAAAAAG
81886210 AAAAAAAACAAAAAAGAAAG
1 AAAAAAAA-AAAAAA-AAAG
81886230 AAAGAAAAAAAGAAAAAAAG
1 AAA-AAAAAAA-AAAAAAAG
81886250 AAAAAAGAAGAGAAAAAAAGAG
1 AAAAAA-AA-A-AAAAAAA-AG
81886272 AAAAA
1 AAAAA
81886277 TGGAGAGGCC
Statistics
Matches: 76, Mismatches: 2, Indels: 17
0.80 0.02 0.18
Matches are distributed among these distances:
19 10 0.13
20 25 0.33
21 31 0.41
22 10 0.13
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.02
Consensus pattern (18 bp):
AAAAAAAAAAAAAAAAAG
Found at i:81886268 original size:1 final size:1
Alignment explanation
Indices: 81886168--81886255 Score: 59
Period size: 1 Copynumber: 88.0 Consensus size: 1
81886158 TTGAGGTTTC
* * * * * * * * * *
81886168 AAAAATAAAAAAAAACAAACAGAAAATAAAAAAACAAAAAACAAAAAAAACAAAAAAGAAAGAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
81886233 GAAAAAAAGAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAA
81886256 GAAGAGAAAA
Statistics
Matches: 61, Mismatches: 26, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.85, C:0.06, G:0.07, T:0.02
Consensus pattern (1 bp):
A
Found at i:81886282 original size:10 final size:10
Alignment explanation
Indices: 81886211--81886276 Score: 64
Period size: 10 Copynumber: 6.5 Consensus size: 10
81886201 ACAAAAAACA
* *
81886211 AAAAAAACAA
1 AAAAAAAGAG
81886221 AAAAGAAAGA-
1 AAAA-AAAGAG
*
81886231 AAGAAAAAAAG
1 AA-AAAAAGAG
81886242 AAAAAAAGA-
1 AAAAAAAGAG
81886251 AAAAAGAAGAG
1 AAAAA-AAGAG
81886262 AAAAAAAGAG
1 AAAAAAAGAG
81886272 AAAAA
1 AAAAA
81886277 TGGAGAGGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
9 5 0.10
10 30 0.62
11 13 0.27
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:81886283 original size:22 final size:20
Alignment explanation
Indices: 81886203--81886276 Score: 71
Period size: 20 Copynumber: 3.6 Consensus size: 20
81886193 ATAAAAAAAC
* * *
81886203 AAAAAACAAAAAA-AACAAA
1 AAAAAAGAAAAAAGAAGAGA
*
81886222 AAAGAAAGAAAGAAA-AAAAGA
1 AAA-AAAGAAA-AAAGAAGAGA
81886243 AAAAAAGAAAAAAGAAGAGA
1 AAAAAAGAAAAAAGAAGAGA
81886263 AAAAAAGAGAAAAA
1 AAAAAAGA-AAAAA
81886277 TGGAGAGGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
19 6 0.13
20 26 0.55
21 15 0.32
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (20 bp):
AAAAAAGAAAAAAGAAGAGA
Found at i:81887538 original size:180 final size:180
Alignment explanation
Indices: 81887234--81887593 Score: 562
Period size: 180 Copynumber: 2.0 Consensus size: 180
81887224 CTTACGAGCA
81887234 AGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGCCATCTCCATATT
1 AGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGCCATCTCCATATT
* ** * *
81887299 CGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAGATCCAAGATG
66 CGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATG
*
81887364 ATTTGGCATCCTTGTGTTTACAAGGA-ACAAATCGAA-ATCATAGCTAATTT
131 ATTTGGCATCCTTGTGCTTACAAGGAGA-AAATCGAAGA-CATAGCTAATTT
* * *
81887414 AGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAATAAATCGAAGTTTGGCGTCTCCATATT
1 AGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGCCATCTCCATATT
* *
81887479 CGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGTAGATCCAAGATG
66 CGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATG
* * *
81887544 GTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTGATTT
131 ATTTGGCATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTAATTT
81887594 GGTTTTCGCG
Statistics
Matches: 164, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
180 162 0.99
181 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (180 bp):
AGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGCCATCTCCATATT
CGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATG
ATTTGGCATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTAATTT
Found at i:81887896 original size:190 final size:190
Alignment explanation
Indices: 81887573--81887952 Score: 760
Period size: 190 Copynumber: 2.0 Consensus size: 190
81887563 ACAAGGAGAA
81887573 AATCGAAGACATAGCTGATTTGGTTTTCGCGTGCTTACACTGAAGCAAAACTAAGATGATTTGGC
1 AATCGAAGACATAGCTGATTTGGTTTTCGCGTGCTTACACTGAAGCAAAACTAAGATGATTTGGC
81887638 ATCTCTGCATTGTCAGAAAACAAATCGAAGAAGCAGATTTGGCATCTCTGTGTTTAGCGGAGAGC
66 ATCTCTGCATTGTCAGAAAACAAATCGAAGAAGCAGATTTGGCATCTCTGTGTTTAGCGGAGAGC
81887703 AGATCGAAGATATCAACATGACAGTCATAAGTTTACAAGAAGCAAATTGAAGACCATGAT
131 AGATCGAAGATATCAACATGACAGTCATAAGTTTACAAGAAGCAAATTGAAGACCATGAT
81887763 AATCGAAGACATAGCTGATTTGGTTTTCGCGTGCTTACACTGAAGCAAAACTAAGATGATTTGGC
1 AATCGAAGACATAGCTGATTTGGTTTTCGCGTGCTTACACTGAAGCAAAACTAAGATGATTTGGC
81887828 ATCTCTGCATTGTCAGAAAACAAATCGAAGAAGCAGATTTGGCATCTCTGTGTTTAGCGGAGAGC
66 ATCTCTGCATTGTCAGAAAACAAATCGAAGAAGCAGATTTGGCATCTCTGTGTTTAGCGGAGAGC
81887893 AGATCGAAGATATCAACATGACAGTCATAAGTTTACAAGAAGCAAATTGAAGACCATGAT
131 AGATCGAAGATATCAACATGACAGTCATAAGTTTACAAGAAGCAAATTGAAGACCATGAT
81887953 TTGATAAGAC
Statistics
Matches: 190, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
190 190 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (190 bp):
AATCGAAGACATAGCTGATTTGGTTTTCGCGTGCTTACACTGAAGCAAAACTAAGATGATTTGGC
ATCTCTGCATTGTCAGAAAACAAATCGAAGAAGCAGATTTGGCATCTCTGTGTTTAGCGGAGAGC
AGATCGAAGATATCAACATGACAGTCATAAGTTTACAAGAAGCAAATTGAAGACCATGAT
Found at i:81890230 original size:16 final size:16
Alignment explanation
Indices: 81890209--81890252 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
81890199 GATGGGAATA
81890209 ATAAAATATATAAAAT
1 ATAAAATATATAAAAT
*
81890225 ATAAAATAT-CAAAAT
1 ATAAAATATATAAAAT
81890240 ATTAAAATA-ATAA
1 A-TAAAATATATAA
81890253 TAATTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 6 0.25
16 18 0.75
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (16 bp):
ATAAAATATATAAAAT
Found at i:81890409 original size:23 final size:22
Alignment explanation
Indices: 81890358--81890411 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
81890348 ATACTACATC
81890358 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
81890377 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
81890400 AATATGTACATA
1 AATATGTACATA
81890412 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:81890458 original size:22 final size:24
Alignment explanation
Indices: 81890374--81890459 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
81890364 TACATATATA
* *
81890374 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
81890397 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
81890422 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
81890445 -AAGATATATACATAA
1 AAAAATATATACATAA
81890460 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:81890507 original size:21 final size:20
Alignment explanation
Indices: 81890476--81890530 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 20
81890466 ATGTAGAAAA
* *
81890476 AAAATAAATAATATAATATT
1 AAAATATATAATATAATAGT
*
81890496 AAAGATATATAATAAAATAGT
1 AAA-ATATATAATATAATAGT
81890517 AAAATATAT-ATATA
1 AAAATATATAATATA
81890531 CGTAATATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 4 0.13
20 9 0.30
21 17 0.57
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (20 bp):
AAAATATATAATATAATAGT
Found at i:81890552 original size:98 final size:92
Alignment explanation
Indices: 81890373--81890599 Score: 198
Period size: 98 Copynumber: 2.4 Consensus size: 92
81890363 GTACATATAT
* * * *
81890373 AAAAAATAAATACATGATAATATTAAAAATATGTACATAATATAGTGTTAAAAATACATACATAA
1 AAAAAATAAATA-AT-ATAATATTAAAGATATATA-ATAAAATAG-GTAAAAAATACATACATAA
81890438 TATAGTTAAGATATATACATAAGATAACATGTAGAA
62 TATAGTTAAGATATATACAT-A-AT-ACAT-TA-AA
* *
81890474 AAAAAATAAATAATATAATATTAAAGATATATAATAAAATA-GTAAAATATATATATACGTAATA
1 AAAAAATAAATAATATAATATTAAAGATATATAATAAAATAGGTAAAA-A-ATACATACATAATA
* * *
81890538 TAAATTTAA-A-ATATACCTAATATATTAAA
64 T--AGTTAAGATATATACATAATACATTAAA
*
81890567 AAATAAT--ATAATATAATATT-AAGA-ATATAATAA
1 AAAAAATAAATAATATAATATTAAAGATATATAATAA
81890600 TAACAAAAAA
Statistics
Matches: 112, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
89 9 0.08
90 4 0.04
91 13 0.12
93 8 0.07
94 2 0.02
95 3 0.03
96 7 0.06
97 2 0.02
98 27 0.24
99 18 0.16
100 7 0.06
101 12 0.11
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.32
Consensus pattern (92 bp):
AAAAAATAAATAATATAATATTAAAGATATATAATAAAATAGGTAAAAAATACATACATAATATA
GTTAAGATATATACATAATACATTAAA
Found at i:81891143 original size:30 final size:31
Alignment explanation
Indices: 81891073--81891246 Score: 136
Period size: 30 Copynumber: 5.8 Consensus size: 31
81891063 TAGGTACAAG
*
81891073 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGGTGTGGCTAGTGGAGT
* ** *
81891103 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGAGCAAGGTGTGGCTAGTGGAGT
81891133 TGGTGGTGGAG-AAGGTGTGGC---TGGAGT
1 TGGTGGTGGAGCAAGGTGTGGCTAGTGGAGT
* *
81891160 TGGTGGTGGA-AAAGGAGTGGCTAGTGGA-T
1 TGGTGGTGGAGCAAGGTGTGGCTAGTGGAGT
* **
81891189 TGGTGGT-GA-AAAGGTGGCTAGAATTAGTGGAGT
1 TGGTGGTGGAGCAAGGT-G-T-G-GCTAGTGGAGT
*
81891222 TGGTGGTGGA-AAAGGTGTGGCTAGT
1 TGGTGGTGGAGCAAGGTGTGGCTAGT
81891247 TGAAAAGTTT
Statistics
Matches: 118, Mismatches: 15, Indels: 22
0.76 0.10 0.14
Matches are distributed among these distances:
27 24 0.20
28 7 0.06
29 11 0.09
30 49 0.42
31 2 0.02
32 8 0.07
33 9 0.08
34 8 0.07
ACGTcount: A:0.22, C:0.04, G:0.47, T:0.27
Consensus pattern (31 bp):
TGGTGGTGGAGCAAGGTGTGGCTAGTGGAGT
Found at i:81891165 original size:27 final size:27
Alignment explanation
Indices: 81891127--81891202 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 27
81891117 GTGTGGCTAG
* * *
81891127 TGGATTTGGTGGTGGAGAAGGTGTGGC
1 TGGAGTTGGTGGTGGAAAAGGAGTGGC
81891154 TGGAGTTGGTGGTGGAAAAGGAGTGGC
1 TGGAGTTGGTGGTGGAAAAGGAGTGGC
81891181 TAGTG-GATTGGTGGT-GAAAAGG
1 T-G-GAG-TTGGTGGTGGAAAAGG
81891203 TGGCTAGAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 25 0.58
28 9 0.21
29 9 0.21
ACGTcount: A:0.21, C:0.03, G:0.50, T:0.26
Consensus pattern (27 bp):
TGGAGTTGGTGGTGGAAAAGGAGTGGC
Found at i:81891242 original size:36 final size:32
Alignment explanation
Indices: 81891154--81891246 Score: 99
Period size: 33 Copynumber: 2.9 Consensus size: 32
81891144 AAGGTGTGGC
81891154 TGGAGTTGGTGGTGGAAAAGGAGTGGC---TAG
1 TGGAGTTGGTGGTGGAAAAGG-GTGGCTAGTAG
81891184 TGGA-TTGGTGGT-GAAAA-GGTGGCTAGAATTAG
1 TGGAGTTGGTGGTGGAAAAGGGTGGCTAG---TAG
81891216 TGGAGTTGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGAGTTGGTGGTGGAAAAGG-GTGGCTAGT
81891247 TGAAAAGTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 17
0.76 0.00 0.24
Matches are distributed among these distances:
26 5 0.09
27 1 0.02
28 5 0.09
29 8 0.15
30 4 0.08
32 7 0.13
33 9 0.17
34 5 0.09
35 1 0.02
36 8 0.15
ACGTcount: A:0.24, C:0.03, G:0.46, T:0.27
Consensus pattern (32 bp):
TGGAGTTGGTGGTGGAAAAGGGTGGCTAGTAG
Found at i:81891788 original size:36 final size:37
Alignment explanation
Indices: 81891713--81891793 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 37
81891703 CTTCAATCTG
*
81891713 CTCTTCTATCGCTTCAGTGAGATAAGGTTTTGGTCTT
1 CTCTTCTGTCGCTTCAGTGAGATAAGGTTTTGGTCTT
* *
81891750 CTCTTCTGTTGCTTCTGTGAGATAAGG-TTTGGTCTT
1 CTCTTCTGTCGCTTCAGTGAGATAAGGTTTTGGTCTT
81891786 CTCTTCTG
1 CTCTTCTG
81891794 CACTTCTCGC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
36 17 0.41
37 24 0.59
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.46
Consensus pattern (37 bp):
CTCTTCTGTCGCTTCAGTGAGATAAGGTTTTGGTCTT
Found at i:81891929 original size:15 final size:15
Alignment explanation
Indices: 81891909--81891942 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
81891899 GTTGATTCTT
81891909 AAAAAGCATAAATTG
1 AAAAAGCATAAATTG
*
81891924 AAAAAGCATTAATTG
1 AAAAAGCATAAATTG
81891939 AAAA
1 AAAA
81891943 TACCTCAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.21
Consensus pattern (15 bp):
AAAAAGCATAAATTG
Found at i:81892147 original size:75 final size:72
Alignment explanation
Indices: 81891934--81892143 Score: 271
Period size: 73 Copynumber: 2.9 Consensus size: 72
81891924 AAAAAGCATT
* *
81891934 AATTGAAAATACCTCAACGTGCCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGA
1 AATTGAAAATACCTCAGCGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
81891998 CGAACAGA
65 CAAACAGA
* * *
81892006 ATTTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCGATATGAGTTGATTTT
1 AATTGAAAATACCTCAGC--GT--GCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
81892070 TGACAAACAGA
62 TGACAAACAGA
* * *
81892081 AATTGAAATTACTTCAGCGTGTCCTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
81892144 TTGAAGAGCA
Statistics
Matches: 119, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
71 1 0.01
72 17 0.14
73 38 0.32
74 33 0.28
75 27 0.23
76 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (72 bp):
AATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
AAACAGA
Found at i:81892159 original size:75 final size:72
Alignment explanation
Indices: 81891934--81892160 Score: 262
Period size: 75 Copynumber: 3.1 Consensus size: 72
81891924 AAAAAGCATT
* *
81891934 AATTGAAAATACCTCAACGTGCCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGA
1 AATTGAAAATACCTCAGCGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
81891998 CGAACAGA
65 AGAACAGA
* * *
81892006 ATTTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCGATATGAGTTGATTTT
1 AATTGAAAATACCTCAGC--GT--GCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
81892070 TGACA-AACAGA
62 TGA-AGAACAGA
* * *
81892081 AATTGAAATTACTTCAGCGTGTCCTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
*
81892146 GAAGAGCAGA
63 GAAGAACAGA
81892156 AATTG
1 AATTG
81892161 GAAAGCAGAA
Statistics
Matches: 131, Mismatches: 13, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
71 1 0.01
72 17 0.13
73 33 0.25
74 34 0.26
75 43 0.33
76 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (72 bp):
AATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
GAACAGA
Found at i:81892228 original size:89 final size:89
Alignment explanation
Indices: 81892077--81892325 Score: 435
Period size: 89 Copynumber: 2.8 Consensus size: 89
81892067 TTTTGACAAA
* * * * *
81892077 CAGAAATTGAAATTACTTCAGCGTGTCCTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTT
1 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
81892142 TTTTGAAGAGCAGAAATTGGAAAG
66 TTTTGAAGAGCAGAAATTGGAAAG
81892166 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
81892231 TTTTGAAGAGCAGATATTGGAAAG
66 TTTTGAAGAGCAGAAATTGGAAAG
*
81892255 CAGAAATCGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
81892320 TTTTGA
66 TTTTGA
81892326 CAAACATAAA
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 153 1.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (89 bp):
CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTGAAGAGCAGAAATTGGAAAG
Found at i:81892391 original size:75 final size:76
Alignment explanation
Indices: 81892251--81892418 Score: 259
Period size: 75 Copynumber: 2.2 Consensus size: 76
81892241 CAGATATTGG
* *
81892251 AAAGCAGAAATCGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAGCAAAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
81892316 A-TTTTTTTGA
66 ATTTTTTTTGA
* * * *
81892326 CAAA-CATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 -AAAGCAAAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
81892390 GATTTTTTTTGA
65 GATTTTTTTTGA
81892402 AAAGCAAAAATTGAAAA
1 AAAGCAAAAATTGAAAA
81892419 GCAGAAATTG
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
75 60 0.72
76 23 0.28
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (76 bp):
AAAGCAAAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTGA
Found at i:81892417 original size:14 final size:14
Alignment explanation
Indices: 81892398--81892445 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
81892388 TTGATTTTTT
81892398 TTGAAAAGCAAAAA
1 TTGAAAAGCAAAAA
*
81892412 TTGAAAAGCAGAAA
1 TTGAAAAGCAAAAA
* *
81892426 TTGAAAAACATAAA
1 TTGAAAAGCAAAAA
81892440 TTGAAA
1 TTGAAA
81892446 TTACCTCAGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.60, C:0.06, G:0.15, T:0.19
Consensus pattern (14 bp):
TTGAAAAGCAAAAA
Found at i:81892522 original size:104 final size:101
Alignment explanation
Indices: 81892322--81892624 Score: 342
Period size: 104 Copynumber: 3.1 Consensus size: 101
81892312 GTTGATTTTT
* *
81892322 TTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
81892387 GTTGATTTTTTTTGAAAAGCAAAAATTGAAAAGCAGAAA
66 GCTGA--TTTTTTGAAAAACAAAAATTGAAAA-CAGAAA
*
81892426 TTGAAAAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
81892491 GCTGA-TTTTTGAAAAATATAAATT-------G-AA
66 GCTGATTTTTTGAAAAACAAAAATTGAAAACAGAAA
* * * *
81892518 --G-AAAACAGAAATTAAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
81892580 GTTGAATTTTTTGAAAGACAGAAATTGAAAAACAGAAA
66 GCTG-ATTTTTTGAAAAACAAAAATTG-AAAACAGAAA
*
81892618 ATGAAAA
1 TTGAAAA
81892625 GACCTCAGCA
Statistics
Matches: 169, Mismatches: 16, Indels: 29
0.79 0.07 0.14
Matches are distributed among these distances:
89 59 0.35
90 2 0.01
91 16 0.09
92 2 0.01
93 1 0.01
99 1 0.01
100 2 0.01
101 16 0.09
102 1 0.01
103 3 0.02
104 66 0.39
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (101 bp):
TTGAAAAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GCTGATTTTTTGAAAAACAAAAATTGAAAACAGAAA
Found at i:81892561 original size:89 final size:88
Alignment explanation
Indices: 81892412--81892699 Score: 348
Period size: 89 Copynumber: 3.2 Consensus size: 88
81892402 AAAGCAAAAA
** * * * *
81892412 TTGAAAAGCAGAAATTGAAAAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCAC
1 TTGAAAAATAGAAATTGAAAAACAGAAATTAAAATTACCTCAGCATGTCCTGAGGCTCAACTCAC
* *
81892477 CTCTTGCAATATGAGCTGA-TTT
66 CTCTCGCAATATGAGTTGATTTT
*
81892499 TTGAAAAATATAAATTGAAGAAAACAGAAATTAAAATTACCTCAGCATGTCCTGAGGCTCAACTC
1 TTGAAAAATAGAAATTG-A-AAAACAGAAATTAAAATTACCTCAGCATGTCCTGAGGCTCAACTC
81892564 ACCTCTCGCAATATGAGTTGAATTTT
64 ACCTCTCGCAATATGAGTTG-ATTTT
* * * * *
81892590 TTGAAAGACAGAAATTGAAAAACAGAAAATGAAAA-GACCTCAGCATGTGAGCC-GAGACTCAAC
1 TTGAAAAATAGAAATTGAAAAACAG-AAATTAAAATTACCTCAGCATGT---CCTGAGGCTCAAC
*
81892653 TCACCTCTCGCGATATGAGTTGATTTT
62 TCACCTCTCGCAATATGAGTTGATTTT
*
81892680 TTGACAAATAGAAATTGAAA
1 TTGAAAAATAGAAATTGAAA
81892700 TTACCTTAGC
Statistics
Matches: 174, Mismatches: 19, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
87 14 0.08
88 1 0.01
89 78 0.45
90 32 0.18
91 47 0.27
92 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAATAGAAATTGAAAAACAGAAATTAAAATTACCTCAGCATGTCCTGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTT
Found at i:81892609 original size:14 final size:14
Alignment explanation
Indices: 81892590--81892624 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
81892580 GTTGAATTTT
*
81892590 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
81892604 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
81892618 ATGAAAA
1 TTGAAAA
81892625 GACCTCAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.63, C:0.06, G:0.17, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:81892828 original size:159 final size:163
Alignment explanation
Indices: 81892524--81892833 Score: 414
Period size: 159 Copynumber: 1.9 Consensus size: 163
81892514 TGAAGAAAAC
* * *
81892524 AGAAATTAAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
1 AGAAATTAAAATTACCTCAGCATGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGAA--T
* * * * *
81892589 TTTGAAAGACAGAAATTGAAAAACAGAAAATGAAAAGACCTCAGCATGTGAGCCGAGACTCAACT
64 TTTAAAAAACAGAAATTGAAAAACAGAAAATGAAAAGACCTCAACACGTGAGCCAAGACTCAACT
*
81892654 CACCTCTCGCGATATGAGTTGATTTTTTGACAAAT
129 CACCTCTCGCAATATGAGTTGATTTTTTGACAAAT
* * *
81892689 AGAAATTGAAATTACCTTAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTG-A-TT
1 AGAAATTAAAATTACCTCAGCATGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGAATTT
* * * *
81892752 TAAAAAACAGACA-T-AAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCCAAGGCTCAACTC
66 TAAAAAACAGAAATTGAAAAACAGAAAATGAAA-AGACCTCAACACGTGAGCCAAGACTCAACTC
81892814 ACCTCTCGCAATATGAGTTG
130 ACCTCTCGCAATATGAGTTG
81892834 TCTCTTAAAA
Statistics
Matches: 128, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
159 58 0.45
160 3 0.02
161 12 0.09
164 1 0.01
165 54 0.42
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (163 bp):
AGAAATTAAAATTACCTCAGCATGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGAATTT
TAAAAAACAGAAATTGAAAAACAGAAAATGAAAAGACCTCAACACGTGAGCCAAGACTCAACTCA
CCTCTCGCAATATGAGTTGATTTTTTGACAAAT
Found at i:81892891 original size:19 final size:19
Alignment explanation
Indices: 81892867--81892908 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
81892857 ACAGAAATAA
81892867 CTCAGCACGTGAGCTAAAG
1 CTCAGCACGTGAGCTAAAG
*
81892886 CTCAGCACGTGAGCTAAGG
1 CTCAGCACGTGAGCTAAAG
81892905 CTCA
1 CTCA
81892909 ACTCACTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.26, T:0.17
Consensus pattern (19 bp):
CTCAGCACGTGAGCTAAAG
Found at i:81893138 original size:75 final size:74
Alignment explanation
Indices: 81892965--81893318 Score: 446
Period size: 75 Copynumber: 4.7 Consensus size: 74
81892955 AGTATAATTT
* * * * * * *
81892965 GAAAATACCTCAACATGTGATC-CGAGGCTCCACTCACCTCTCGTAATATGAGTTGA-TTTTCGA
1 GAAAATACCTCAAC--GTG-TCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGATTTTTTGA
* *
81893028 AA-ACGGAGATC
63 AAGACAGAAATC
* * * * *
81893039 -AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTTTGAA
1 GAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGATT-TTTTGAA
*
81893103 AGACAGAAATT
64 AGACAGAAATC
*
81893114 GAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTGAAA
1 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTG-ATTTTTTGAAA
81893179 GACAGAAATC
65 GACAGAAATC
*
81893189 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCCGTATGAGTTGAATTTTTTTGAA
1 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTG-A-TTTTTTGAA
*
81893254 AGACAGAAATT
64 AGACAGAAATC
81893265 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGA
1 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGA
81893319 CTTACGAAAC
Statistics
Matches: 253, Mismatches: 19, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
71 2 0.01
72 34 0.13
73 5 0.02
74 15 0.06
75 120 0.47
76 77 0.30
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.30
Consensus pattern (74 bp):
GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGATTTTTTGAAAG
ACAGAAATC
Found at i:81893280 original size:151 final size:148
Alignment explanation
Indices: 81892963--81893318 Score: 475
Period size: 151 Copynumber: 2.4 Consensus size: 148
81892953 AAAGTATAAT
* * * * * *
81892963 TTGAAAATACCTCAACATGTGATC-CGAGGCTCCACTCACCTCTCGTAATATGAGTTG-ATTTTC
1 TTGAAAATACCTCAAC--GTG-TCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTC
* * *
81893026 GAAAACGGAGATCAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
63 GAAAACAGAAATCAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
81893091 GATTATTTTGAAAGACAGAAA
128 GATTATTTTGAAAGACAGAAA
* *
81893112 TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTGA
1 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAA-TTTTCGA
* * * **
81893177 AAGACAGAAATCGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCCGTATGAGTT
65 AA-ACAGAAATC-AAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
81893241 GAATTTTTTTGAAAGACAGAAA
128 G-ATTATTTTGAAAGACAGAAA
81893263 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGA
1 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGA
81893319 CTTACGAAAC
Statistics
Matches: 183, Mismatches: 18, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
146 2 0.01
147 30 0.16
148 1 0.01
149 23 0.13
150 49 0.27
151 78 0.43
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (148 bp):
TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTCGAA
AACAGAAATCAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TATTTTGAAAGACAGAAA
Found at i:81893295 original size:76 final size:76
Alignment explanation
Indices: 81893039--81893318 Score: 456
Period size: 75 Copynumber: 3.7 Consensus size: 76
81893029 AACGGAGATC
* * * * * *
81893039 AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTATTTTGAA
1 AAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTTGAA
81893103 AGACAGAAATTG
65 AGACAGAAATTG
*
81893115 AAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAA-TTTTTTGAAA
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTTGAAA
*
81893179 GACAGAAATCG
66 GACAGAAATTG
*
81893190 AAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCCGTATGAGTTGAATTTTTTTGAAA
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTTGAAA
81893255 GACAGAAATTG
66 GACAGAAATTG
81893266 AAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGA
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGA
81893319 CTTACGAAAC
Statistics
Matches: 190, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
75 114 0.60
76 76 0.40
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (76 bp):
AAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTTGAAA
GACAGAAATTG
Found at i:81895445 original size:20 final size:18
Alignment explanation
Indices: 81895420--81895483 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 18
81895410 ATTTGATCTC
81895420 TCTTTTTTGTTTTTTTCTTG
1 TCTTTTTT-TTTTTTT-TTG
81895440 TCTTTTATTTTTTATTTTTG
1 TCTTTT-TTTTTT-TTTTTG
*
81895460 T-TTTTTTTTTATTTTTTT
1 TCTTTTTTTTT-TTTTTTG
81895478 TCTTTT
1 TCTTTT
81895484 CATGAGTGTC
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
18 11 0.28
19 9 0.23
20 14 0.36
21 5 0.13
ACGTcount: A:0.05, C:0.06, G:0.05, T:0.84
Consensus pattern (18 bp):
TCTTTTTTTTTTTTTTTG
Found at i:81895467 original size:17 final size:18
Alignment explanation
Indices: 81895442--81895475 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
81895432 TTTTCTTGTC
81895442 TTTTATTTTTTATTTTTG
1 TTTTATTTTTTATTTTTG
81895460 TTTT-TTTTTTATTTTT
1 TTTTATTTTTTATTTTT
81895476 TTTCTTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (18 bp):
TTTTATTTTTTATTTTTG
Found at i:81896128 original size:17 final size:17
Alignment explanation
Indices: 81896106--81896143 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
81896096 GCGAAGGTAA
81896106 ATTCCAGAGAATAAATG
1 ATTCCAGAGAATAAATG
81896123 ATTCCAGAGAATAAATG
1 ATTCCAGAGAATAAATG
81896140 ATTC
1 ATTC
81896144 TAAGGATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (17 bp):
ATTCCAGAGAATAAATG
Found at i:81899325 original size:16 final size:15
Alignment explanation
Indices: 81899304--81899351 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
81899294 GATGGGAATA
81899304 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
81899320 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
81899335 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
81899351 A
1 A
81899352 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:81899334 original size:8 final size:8
Alignment explanation
Indices: 81899300--81899351 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
81899290 CAATGATGGG
*
81899300 AATAATAA
1 AATATTAA
81899308 AATATATAA
1 AATAT-TAA
81899317 AATA-TAA
1 AATATTAA
81899324 AATATTAA
1 AATATTAA
*
81899332 AATATCAA
1 AATATTAA
*
81899340 AATATTAG
1 AATATTAA
81899348 AATA
1 AATA
81899352 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:81899351 original size:24 final size:24
Alignment explanation
Indices: 81899299--81899355 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
81899289 ACAATGATGG
*
81899299 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
81899323 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
81899347 GAATAATAA
1 GAATAATAA
81899356 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:81899514 original size:23 final size:22
Alignment explanation
Indices: 81899463--81899516 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
81899453 ATACTACATC
81899463 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
81899482 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
81899505 AATATGTACATA
1 AATATGTACATA
81899517 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:81899563 original size:22 final size:24
Alignment explanation
Indices: 81899479--81899564 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
81899469 TACATATATA
* *
81899479 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
81899502 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
81899527 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
81899550 -AAGATATATACATAA
1 AAAAATATATACATAA
81899565 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:81899619 original size:25 final size:24
Alignment explanation
Indices: 81899590--81899719 Score: 81
Period size: 25 Copynumber: 5.4 Consensus size: 24
81899580 ATATATATAA
81899590 ATAAATAATATAATATTAAAGATAT
1 ATAAATAATATAATATTAAAGA-AT
* * * *
81899615 ATAAATAAAATAGTATAAAATATAT
1 ATAAATAATATAATATTAAAGA-AT
* * *
81899640 ATATACGTAATATAAAATTTAA-AAT
1 ATA-A-ATAATATAATATTAAAGAAT
** *
81899665 ATACCTAATAT-AT-TAAAAGAAT
1 ATAAATAATATAATATTAAAGAAT
*
81899687 ATATATAATATAATATT-AAGAA-
1 ATAAATAATATAATATTAAAGAAT
81899709 ATATAATAATA
1 ATA-AATAATA
81899720 ACAAAAAAAA
Statistics
Matches: 80, Mismatches: 19, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
21 3 0.04
22 16 0.20
23 19 0.24
24 1 0.01
25 29 0.36
26 2 0.03
27 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (24 bp):
ATAAATAATATAATATTAAAGAAT
Found at i:81899623 original size:14 final size:13
Alignment explanation
Indices: 81899582--81899633 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 13
81899572 TGTAGAAAAT
81899582 ATATATAAAT-AA
1 ATATATAAATAAA
81899594 ATAATATAATATTAAA
1 AT-ATATAA-A-TAAA
81899610 GATATATAAATAAA
1 -ATATATAAATAAA
81899624 ATAGTATAAA
1 ATA-TATAAA
81899634 ATATATATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
12 2 0.06
13 9 0.26
14 11 0.32
15 2 0.06
16 8 0.24
17 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (13 bp):
ATATATAAATAAA
Found at i:81900347 original size:30 final size:30
Alignment explanation
Indices: 81900197--81900371 Score: 219
Period size: 30 Copynumber: 5.8 Consensus size: 30
81900187 TAGGTACAAG
* *
81900197 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
81900227 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* *
81900257 TGGTAGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
81900287 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
81900317 TGGTGGTGGAAAATGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
81900347 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
81900372 TGAGAAAAGT
Statistics
Matches: 129, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
29 2 0.02
30 127 0.98
ACGTcount: A:0.21, C:0.04, G:0.47, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:81900659 original size:40 final size:37
Alignment explanation
Indices: 81900615--81900689 Score: 89
Period size: 37 Copynumber: 1.9 Consensus size: 37
81900605 TTAATATATA
81900615 TTTTAACACATATCATTACTTAT-TATTTATTATATTATGT
1 TTTTAACACATA--A-TACTTATATATTT-TTATATTATGT
* *
81900655 TTTTATCACATAATATTTATATATTTTTATATTAT
1 TTTTAACACATAATACTTATATATTTTTATATTAT
81900690 TATATTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 15 0.47
38 6 0.19
40 11 0.34
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.57
Consensus pattern (37 bp):
TTTTAACACATAATACTTATATATTTTTATATTATGT
Found at i:81903112 original size:17 final size:17
Alignment explanation
Indices: 81903084--81903127 Score: 79
Period size: 17 Copynumber: 2.5 Consensus size: 17
81903074 ATTATACTAG
81903084 AGATATTCTAGTATAATT
1 AGATA-TCTAGTATAATT
81903102 AGATATCTAGTATAATT
1 AGATATCTAGTATAATT
81903119 AGATATCTA
1 AGATATCTA
81903128 ATCTCAGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 21 0.81
18 5 0.19
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (17 bp):
AGATATCTAGTATAATT
Found at i:81911975 original size:14 final size:14
Alignment explanation
Indices: 81911956--81911986 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81911946 TGCTACCATT
81911956 TTACTATTATGTTG
1 TTACTATTATGTTG
*
81911970 TTACTATTTTGTTG
1 TTACTATTATGTTG
81911984 TTA
1 TTA
81911987 TTGCTTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (14 bp):
TTACTATTATGTTG
Found at i:81920291 original size:26 final size:27
Alignment explanation
Indices: 81920258--81920315 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
81920248 TGAATATATA
*
81920258 TTTAATAA-GTTTTA-TATATTTAATT
1 TTTAATAATGTTATATTATATTTAATT
* *
81920283 TTTAGATAATGTTATATTATTTTTTATT
1 TTTA-ATAATGTTATATTATATTTAATT
81920311 TTTAA
1 TTTAA
81920316 AAATATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 4 0.15
26 4 0.15
27 6 0.22
28 13 0.48
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (27 bp):
TTTAATAATGTTATATTATATTTAATT
Found at i:81928411 original size:27 final size:27
Alignment explanation
Indices: 81928381--81928449 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
81928371 AAAATAACCG
81928381 TTTTGCCCTTATGTGGTAAAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
* * * ** *
81928408 TTTTGCCTTTATATGGTAAGATGGTTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
*
81928435 TTTTGCCCCTATGTG
1 TTTTGCCCTTATGTG
81928450 ATGTATATTT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.19, C:0.14, G:0.22, T:0.45
Consensus pattern (27 bp):
TTTTGCCCTTATGTGGTAAAATGACTA
Found at i:81930847 original size:30 final size:30
Alignment explanation
Indices: 81930813--81930873 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
81930803 TCCTTAACTC
81930813 AAACTTTGGCAAAATTAAAATTTTGCCCCT
1 AAACTTTGGCAAAATTAAAATTTTGCCCCT
* * * * *
81930843 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTAAAATTTTGCCCCT
81930873 A
1 A
81930874 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTAAAATTTTGCCCCT
Found at i:81934161 original size:68 final size:65
Alignment explanation
Indices: 81933955--81934176 Score: 216
Period size: 68 Copynumber: 3.4 Consensus size: 65
81933945 TATAATTTTG
* * * *
81933955 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCA-CTTTA-TCTCGTA
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACACATGCGACCTAGCTACCTCTATTCTCGTA
** * * * * * * * *
81934018 GCTCTCTTGTTTACATGGTTTCCTTCACCTGGAACCACACATGCAACCTAGCTACATCTA-TCTC
1 GCTCTCTTGTACACATGG--T-GTACACATAGTATCACACATGCGACCTAGCTACCTCTATTCTC
81934082 GTA
63 GTA
* *
81934085 GCTCTCTTGTCCACATGGTGTACACATAGTATCACTCATGCGACCTAGCTACCTCATAATGTCTC
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACACATGCGACCTAGCTACCTC-T-AT-TCTC
81934150 GTA
63 GTA
*
81934153 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
81934177 TCCCGTGTTA
Statistics
Matches: 124, Mismatches: 27, Indels: 11
0.77 0.17 0.07
Matches are distributed among these distances:
63 16 0.13
64 27 0.22
65 3 0.02
66 23 0.19
67 26 0.21
68 29 0.23
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.32
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACACATGCGACCTAGCTACCTCTATTCTCGTA
Found at i:81935909 original size:17 final size:17
Alignment explanation
Indices: 81935887--81935948 Score: 79
Period size: 17 Copynumber: 3.6 Consensus size: 17
81935877 TATTGTTTAA
*
81935887 ACTGTTACTGTACTAAT
1 ACTGTTACTGCACTAAT
81935904 ACTGTTACTGCACTAATT
1 ACTGTTACTGCACTAA-T
* * *
81935922 ACTATTACTACACTGAT
1 ACTGTTACTGCACTAAT
81935939 ACTGTTACTG
1 ACTGTTACTG
81935949 TAATGGGCTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
17 24 0.63
18 14 0.37
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (17 bp):
ACTGTTACTGCACTAAT
Found at i:81939226 original size:27 final size:27
Alignment explanation
Indices: 81939196--81939257 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
81939186 AAAATGGTCG
* *
81939196 TTTTGCCCTTTTGTGGTAAAATGACTA
1 TTTTGCCCTTATATGGTAAAATGACTA
* *
81939223 TTTTGCCCTTATATGGTAAGATGACTG
1 TTTTGCCCTTATATGGTAAAATGACTA
81939250 TTTTGCCC
1 TTTTGCCC
81939258 CTATGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (27 bp):
TTTTGCCCTTATATGGTAAAATGACTA
Found at i:81939618 original size:18 final size:18
Alignment explanation
Indices: 81939595--81939655 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
81939585 ATACTGTTTA
81939595 AACTGTTACTGCACTAAT
1 AACTGTTACTGCACTAAT
*
81939613 AACTGTTACTACACTAAT
1 AACTGTTACTGCACTAAT
* * *
81939631 TATTGTTACTGCACTGAT
1 AACTGTTACTGCACTAAT
*
81939649 TACTGTT
1 AACTGTT
81939656 GCTACAATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (18 bp):
AACTGTTACTGCACTAAT
Found at i:81947492 original size:25 final size:25
Alignment explanation
Indices: 81947464--81947512 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
81947454 CGATCTCGTA
81947464 GTCTGCACTGGATTTTCTTCAGCTT
1 GTCTGCACTGGATTTTCTTCAGCTT
81947489 GTCTGCACTGGATTTTCTTCAGCT
1 GTCTGCACTGGATTTTCTTCAGCT
81947513 AACACTGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.43
Consensus pattern (25 bp):
GTCTGCACTGGATTTTCTTCAGCTT
Found at i:81957412 original size:25 final size:25
Alignment explanation
Indices: 81957404--81957495 Score: 109
Period size: 25 Copynumber: 3.7 Consensus size: 25
81957394 TTCCTGTTAT
*
81957404 TTGGCTCTCACGAGCTTCCCAATAA
1 TTGGCTCTCATGAGCTTCCCAATAA
81957429 TTGGCTCTCATGAGCTTCCCAATTAA
1 TTGGCTCTCATGAGCTTCCCAA-TAA
* *
81957455 -TGGCTCTTCA-GAGCTTCTCGAT-A
1 TTGGCTC-TCATGAGCTTCCCAATAA
*
81957478 TTGGCTCGCATGAGCTTC
1 TTGGCTCTCATGAGCTTC
81957496 TTGATTATGG
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
23 3 0.05
24 14 0.24
25 36 0.61
26 6 0.10
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.33
Consensus pattern (25 bp):
TTGGCTCTCATGAGCTTCCCAATAA
Found at i:81957506 original size:24 final size:24
Alignment explanation
Indices: 81957405--81957507 Score: 84
Period size: 25 Copynumber: 4.2 Consensus size: 24
81957395 TCCTGTTATT
* * * *
81957405 TGGCTCTCACGAGCTTCCCAATAA
1 TGGCTCTCATGAGCTTCTCGATTA
* *
81957429 TTGGCTCTCATGAGCTTCCCAATTAA
1 -TGGCTCTCATGAGCTTCTCGATT-A
81957455 TGGCTCTTCA-GAGCTTCTCGA-TA
1 TGGCTC-TCATGAGCTTCTCGATTA
* *
81957478 TTGGCTCGCATGAGCTTCTTGATTA
1 -TGGCTCTCATGAGCTTCTCGATTA
81957503 TGGCT
1 TGGCT
81957508 GGCTCACATG
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
23 3 0.04
24 22 0.33
25 38 0.57
26 4 0.06
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.34
Consensus pattern (24 bp):
TGGCTCTCATGAGCTTCTCGATTA
Found at i:81982455 original size:22 final size:22
Alignment explanation
Indices: 81982429--81982480 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
81982419 AATGTGCTTT
81982429 ATTAATGAAAATTACAA-GGTTA
1 ATTAATGAAAATTACAATGG-TA
* *
81982451 ATTAAT-AAAGTTATAATGGTA
1 ATTAATGAAAATTACAATGGTA
81982472 ATT-ATGAAA
1 ATTAATGAAA
81982481 TAAATTAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 2 0.08
21 16 0.62
22 8 0.31
ACGTcount: A:0.50, C:0.02, G:0.13, T:0.35
Consensus pattern (22 bp):
ATTAATGAAAATTACAATGGTA
Found at i:81983438 original size:43 final size:43
Alignment explanation
Indices: 81983380--81983550 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 43
81983370 ATTATCGAGA
* * *
81983380 TGTGGTTACATGTAAGACCATGTATGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
81983423 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGCTA-
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * * * * * * *
81983466 TATGATTTCGTGTAAGACCCTGTTTAGGACAGTAGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * *
81983508 ATGTGATAACATGTAAAACCATATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
81983551 GAGCATTATG
Statistics
Matches: 101, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 1 0.01
42 6 0.06
43 92 0.91
44 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:81985430 original size:23 final size:23
Alignment explanation
Indices: 81985404--81985451 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
81985394 CTTCATACAC
81985404 ATAGTATCATCTACCACATAGGT
1 ATAGTATCATCTACCACATAGGT
81985427 ATAGTATCATCTACCACATAGGT
1 ATAGTATCATCTACCACATAGGT
81985450 AT
1 AT
81985452 CGAACATACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.31
Consensus pattern (23 bp):
ATAGTATCATCTACCACATAGGT
Found at i:81992716 original size:11 final size:11
Alignment explanation
Indices: 81992700--81992725 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81992690 TCAATATCAT
81992700 TATCAACATTC
1 TATCAACATTC
81992711 TATCAACATTC
1 TATCAACATTC
81992722 TATC
1 TATC
81992726 TCATTGCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (11 bp):
TATCAACATTC
Found at i:81993115 original size:29 final size:29
Alignment explanation
Indices: 81993057--81993229 Score: 145
Period size: 29 Copynumber: 6.0 Consensus size: 29
81993047 TTTTTTGAAG
**
81993057 AATAGTGGCAAAACTATAAAATCTAAAAA
1 AATAGTGGCAAAACTATAAAATCTGGAAA
81993086 AATAGTGGCAAAACTATAAAATCTGGAAA
1 AATAGTGGCAAAACTATAAAATCTGGAAA
* * * *
81993115 ACA-A-TGGTAGAATTGTAAAAATCTGGAAA
1 A-ATAGTGGCAAAACTAT-AAAATCTGGAAA
** * * *
81993144 ACCAGTGGCAAAACTGTAAAATTTTG-AA
1 AATAGTGGCAAAACTATAAAATCTGGAAA
* * * *
81993172 AATTGTGGCAGAACTGTAAATTCTGGAAA
1 AATAGTGGCAAAACTATAAAATCTGGAAA
** *
81993201 ACCAGTGGCAAAACTATAAAATCTAGAAA
1 AATAGTGGCAAAACTATAAAATCTGGAAA
81993230 CTTGTGGCAG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
28 29 0.26
29 74 0.65
30 10 0.09
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.23
Consensus pattern (29 bp):
AATAGTGGCAAAACTATAAAATCTGGAAA
Found at i:81993151 original size:58 final size:57
Alignment explanation
Indices: 81993062--81993229 Score: 183
Period size: 57 Copynumber: 2.9 Consensus size: 57
81993052 TGAAGAATAG
* * ** ** *
81993062 TGGCAAAACTATAAAATCTAAAAAAATAGTGGCAAAACTATAAAATCTGGAAAACAA
1 TGGCAGAACTGTAAAATCTGGAAAACCAGTGGCAAAACTATAAAATCTAGAAAACAA
* * * * * ***
81993119 TGGTAGAATTGTAAAAATCTGGAAAACCAGTGGCAAAACTGTAAAATTTTGAAAATTG
1 TGGCAGAACTGT-AAAATCTGGAAAACCAGTGGCAAAACTATAAAATCTAGAAAACAA
*
81993177 TGGCAGAACTGTAAATTCTGGAAAACCAGTGGCAAAACTATAAAATCTAGAAA
1 TGGCAGAACTGTAAAATCTGGAAAACCAGTGGCAAAACTATAAAATCTAGAAA
81993230 CTTGTGGCAG
Statistics
Matches: 90, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
57 45 0.50
58 45 0.50
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.23
Consensus pattern (57 bp):
TGGCAGAACTGTAAAATCTGGAAAACCAGTGGCAAAACTATAAAATCTAGAAAACAA
Found at i:81993186 original size:28 final size:28
Alignment explanation
Indices: 81993148--81993238 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 28
81993138 TGGAAAACCA
*
81993148 GTGGCAAAACTGTAAAATTTTGAAAATT
1 GTGGCAAAACTGTAAAATTTAGAAAATT
* * **
81993176 GTGGCAGAACTGT-AAATTCTGGAAAACCA
1 GTGGCAAAACTGTAAAATT-TAGAAAA-TT
* * *
81993205 GTGGCAAAACTATAAAATCTAGAAACTT
1 GTGGCAAAACTGTAAAATTTAGAAAATT
81993233 GTGGCA
1 GTGGCA
81993239 GATGTAACAC
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
27 5 0.10
28 24 0.49
29 16 0.33
30 4 0.08
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (28 bp):
GTGGCAAAACTGTAAAATTTAGAAAATT
Found at i:81993221 original size:57 final size:58
Alignment explanation
Indices: 81993089--81993240 Score: 198
Period size: 57 Copynumber: 2.6 Consensus size: 58
81993079 CTAAAAAAAT
* *** * *
81993089 AGTGGCAAAACTATAAAATCTGGAAAACAATGGTAGAATTGTAAAAATCTGGAAAACC
1 AGTGGCAAAACTATAAAATCTAGAAAATTGTGGCAGAACTGTAAAAATCTGGAAAACC
* * * *
81993147 AGTGGCAAAACTGTAAAATTTTGAAAATTGTGGCAGAACTGT-AAATTCTGGAAAACC
1 AGTGGCAAAACTATAAAATCTAGAAAATTGTGGCAGAACTGTAAAAATCTGGAAAACC
*
81993204 AGTGGCAAAACTATAAAATCTAGAAACTTGTGGCAGA
1 AGTGGCAAAACTATAAAATCTAGAAAATTGTGGCAGA
81993241 TGTAACACCC
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
57 47 0.58
58 34 0.42
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.23
Consensus pattern (58 bp):
AGTGGCAAAACTATAAAATCTAGAAAATTGTGGCAGAACTGTAAAAATCTGGAAAACC
Found at i:82014970 original size:29 final size:28
Alignment explanation
Indices: 82014928--82015038 Score: 82
Period size: 29 Copynumber: 3.9 Consensus size: 28
82014918 GGATGTTACA
* * * *
82014928 GCAGAATTGTAAAATATGGAAAAATAGTG
1 GCAGAACTATAAAATCTGAAAAAAT-GTG
**
82014957 GCAGAACTATAAAATCTGTAAAACCTGTG
1 GCAGAACTATAAAATCTG-AAAAAATGTG
* * * *
82014986 GAAAAATTGTAAAATCT-AAAAAATTGTG
1 GCAGAACTATAAAATCTGAAAAAA-TGTG
*
82015014 GCAGAACTATAAAATCT-ATAAAATG
1 GCAGAACTATAAAATCTGAAAAAATG
82015039 ATGGTACATT
Statistics
Matches: 63, Mismatches: 17, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
27 6 0.10
28 22 0.35
29 31 0.49
30 4 0.06
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.25
Consensus pattern (28 bp):
GCAGAACTATAAAATCTGAAAAAATGTG
Found at i:82015026 original size:28 final size:28
Alignment explanation
Indices: 82014947--82015037 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
82014937 TAAAATATGG
* *
82014947 AAAAATAGTGGCAGAACTATAAAATCTGT
1 AAAAATTGTGGCAGAACTATAAAATCT-A
** * * * *
82014976 AAAACCTGTGGAAAAATTGTAAAATCTA
1 AAAAATTGTGGCAGAACTATAAAATCTA
82015004 AAAAATTGTGGCAGAACTATAAAATCTA
1 AAAAATTGTGGCAGAACTATAAAATCTA
*
82015032 TAAAAT
1 AAAAAT
82015038 GATGGTACAT
Statistics
Matches: 47, Mismatches: 15, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
28 27 0.57
29 20 0.43
ACGTcount: A:0.51, C:0.10, G:0.14, T:0.25
Consensus pattern (28 bp):
AAAAATTGTGGCAGAACTATAAAATCTA
Found at i:82015920 original size:162 final size:162
Alignment explanation
Indices: 82015749--82016077 Score: 631
Period size: 162 Copynumber: 2.0 Consensus size: 162
82015739 CCATCTTATG
*
82015749 TTTTATTTCTACCATAATAAATTGTTATACTAACTTGGTTTCCATCTTTAATTGATTGAAAAATA
1 TTTTATTTCTACCATAATAAATTGTTATACTAACTTGGTTTCCATCCTTAATTGATTGAAAAATA
*
82015814 AAGAGAAAAAAATGCAAAGATTGGAATTTAAAACCTTGGCTTTCTAGGCAATCTCTTAAGCTCTT
66 AAGAGAAAAAAATGCAAAGAGTGGAATTTAAAACCTTGGCTTTCTAGGCAATCTCTTAAGCTCTT
82015879 AACCACTAATGTTAGGACTCAATTTATGCTAA
131 AACCACTAATGTTAGGACTCAATTTATGCTAA
*
82015911 TTTTATTTCTACCATAATAAATTGTTATACTAACTTGGTTTCCATCCTTAATTGCTTGAAAAATA
1 TTTTATTTCTACCATAATAAATTGTTATACTAACTTGGTTTCCATCCTTAATTGATTGAAAAATA
82015976 AAGAGAAAAAAATGCAAAGAGTGGAATTTAAAACCTTGGCTTTCTAGGCAATCTCTTAAGCTCTT
66 AAGAGAAAAAAATGCAAAGAGTGGAATTTAAAACCTTGGCTTTCTAGGCAATCTCTTAAGCTCTT
82016041 AACCACTAATGTTAGGACTCAATTTATGCTAA
131 AACCACTAATGTTAGGACTCAATTTATGCTAA
82016073 TTTTA
1 TTTTA
82016078 GTCAATTGTA
Statistics
Matches: 164, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 164 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (162 bp):
TTTTATTTCTACCATAATAAATTGTTATACTAACTTGGTTTCCATCCTTAATTGATTGAAAAATA
AAGAGAAAAAAATGCAAAGAGTGGAATTTAAAACCTTGGCTTTCTAGGCAATCTCTTAAGCTCTT
AACCACTAATGTTAGGACTCAATTTATGCTAA
Found at i:82019832 original size:20 final size:19
Alignment explanation
Indices: 82019817--82019924 Score: 83
Period size: 20 Copynumber: 5.5 Consensus size: 19
82019807 CGTATAAACT
82019817 GTAATTCATTCATATAACTA
1 GTAATTCATTCATATAAC-A
* * *
82019837 GTAAATCATCCGTATAACTA
1 GTAATTCATTCATATAAC-A
* *
82019857 GCAATTCA-TCAGTATATCA
1 GTAATTCATTCA-TATAACA
* **
82019876 GTAATTTAACCATATCAACA
1 GTAATTCATTCATAT-AACA
*
82019896 GTAATTCATTCATTTCAACA
1 GTAATTCATTCATAT-AACA
82019916 GTAATTCAT
1 GTAATTCAT
82019925 ATAATCAGTA
Statistics
Matches: 69, Mismatches: 16, Indels: 6
0.76 0.18 0.07
Matches are distributed among these distances:
19 11 0.16
20 58 0.84
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.35
Consensus pattern (19 bp):
GTAATTCATTCATATAACA
Found at i:82020144 original size:24 final size:23
Alignment explanation
Indices: 82020081--82020218 Score: 93
Period size: 24 Copynumber: 5.8 Consensus size: 23
82020071 GATGATAAAC
82020081 AGTAAGCTCATACGAGCT-AAAT
1 AGTAAGCTCATACGAGCTAAAAT
* *
82020103 CGATAAGCTTCA-ATGAGCTAAAAAT
1 AG-TAAGC-TCATACGAGCT-AAAAT
* *
82020128 AGTAAGCTCATACGAGCTGAATT
1 AGTAAGCTCATACGAGCTAAAAT
* * * *
82020151 GGTAAACTCCA-ATGAGCTGAAAAC
1 AGTAAGCT-CATACGAGCT-AAAAT
* *
82020175 AGTAAGCTCTTACGAGCTGATATAT
1 AGTAAGCTCATACGAGCT-A-AAAT
82020200 CAGTAAGCTCATACGAGCT
1 -AGTAAGCTCATACGAGCT
82020219 GTGGTGAGTC
Statistics
Matches: 87, Mismatches: 19, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
22 1 0.01
23 30 0.34
24 32 0.37
25 7 0.08
26 17 0.20
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (23 bp):
AGTAAGCTCATACGAGCTAAAAT
Done.