Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 245 of 311
Found at i:82020164 original size:47 final size:47
Alignment explanation
Indices: 82020077--82020194 Score: 164
Period size: 47 Copynumber: 2.5 Consensus size: 47
82020067 TTGAGATGAT
* * *
82020077 AAACAGTAAGCTCATACGAGCTAAATCGATAAGCTTCAATGAGCTAA
1 AAACAGTAAGCTCATACGAGCTGAATCGATAAACTCCAATGAGCTAA
* * * *
82020124 AAATAGTAAGCTCATACGAGCTGAATTGGTAAACTCCAATGAGCTGA
1 AAACAGTAAGCTCATACGAGCTGAATCGATAAACTCCAATGAGCTAA
*
82020171 AAACAGTAAGCTCTTACGAGCTGA
1 AAACAGTAAGCTCATACGAGCTGA
82020195 TATATCAGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (47 bp):
AAACAGTAAGCTCATACGAGCTGAATCGATAAACTCCAATGAGCTAA
Found at i:82024547 original size:24 final size:24
Alignment explanation
Indices: 82024508--82024577 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
82024498 TAAGCTGTAT
*
82024508 TGAGCTG-AAACGGTAAGCTCTGA
1 TGAGCTGAAAACAGTAAGCTCTGA
* * *
82024531 TGAGTTGAAAACAGTAAGATCTTA
1 TGAGCTGAAAACAGTAAGCTCTGA
82024555 TGAGCTGAAATATCAGTAAGCTC
1 TGAGCTGAAA-A-CAGTAAGCTC
82024578 ATACGGTCTG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
23 6 0.16
24 22 0.58
25 1 0.03
26 9 0.24
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (24 bp):
TGAGCTGAAAACAGTAAGCTCTGA
Found at i:82038423 original size:27 final size:27
Alignment explanation
Indices: 82038393--82038654 Score: 233
Period size: 27 Copynumber: 9.7 Consensus size: 27
82038383 CCCTAATTGA
* * * *
82038393 TAAAATGGTTGTTTTACCCTTAAGTGG
1 TAAAATGATTATTTTGCCCTTATGTGG
* * *
82038420 TAAAATGACTATTTTACCCTTATGTGA
1 TAAAATGATTATTTTGCCCTTATGTGG
*
82038447 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGATTATTTTGCCCTTATGTGG
* * *
82038474 TAAAATAACTATTTTGCCCTTAAGTGG
1 TAAAATGATTATTTTGCCCTTATGTGG
* * * *
82038501 T-AAATGATTGTTTCGCCTTTATGTGA
1 TAAAATGATTATTTTGCCCTTATGTGG
*
82038527 TAAAATGACTATTCTT-CCCTTATGTGG
1 TAAAATGATTATT-TTGCCCTTATGTGG
* * *
82038554 TAAAATAACTT-TTTTTCCCTTAAGTGG
1 TAAAATGA-TTATTTTGCCCTTATGTGG
* * **
82038581 TAAAATGATTGTTTAGCCCTTATGTAA
1 TAAAATGATTATTTTGCCCTTATGTGG
* *
82038608 TAAAATGATTGTTCTGCCCTTATGTGG
1 TAAAATGATTATTTTGCCCTTATGTGG
* * *
82038635 TAAGATGACTGTTTTGCCCT
1 TAAAATGATTATTTTGCCCT
82038655 GTGTGATGTA
Statistics
Matches: 193, Mismatches: 37, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
26 23 0.12
27 168 0.87
28 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (27 bp):
TAAAATGATTATTTTGCCCTTATGTGG
Found at i:82038474 original size:54 final size:54
Alignment explanation
Indices: 82038390--82038654 Score: 270
Period size: 54 Copynumber: 4.9 Consensus size: 54
82038380 AACCCCTAAT
* * *
82038390 TGATAAAATGGTTGTTTTACCCTTAAGTGGTAAAATGACTATTTTACCCTTATG
1 TGATAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTATTTTACCCTTATG
* * * * *
82038444 TGATAAAATGACTATTTTGCCCTTATGTGGTAAAATAACTATTTTGCCCTTAAG
1 TGATAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTATTTTACCCTTATG
* * * *
82038498 TGGT-AAATGATTGTTTCGCCTTTATGTGATAAAATGACTATTCTT-CCCTTATG
1 TGATAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTATT-TTACCCTTATG
* * * *
82038551 TGGTAAAATAACTT-TTTTTCCCTTAAGTGGTAAAATGA-T-TGTTTAGCCCTTATG
1 TGATAAAATGA-TTGTTTTGCCCTTATGTGGTAAAATGACTAT-TTTA-CCCTTATG
* * * * *
82038605 TAATAAAATGATTGTTCTGCCCTTATGTGGTAAGATGACTGTTTTGCCCT
1 TGATAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTATTTTACCCT
82038655 GTGTGATGTA
Statistics
Matches: 172, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
52 3 0.02
53 47 0.27
54 115 0.67
55 6 0.03
56 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (54 bp):
TGATAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTATTTTACCCTTATG
Found at i:82039008 original size:24 final size:24
Alignment explanation
Indices: 82038974--82039025 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
82038964 AGGTCTTGTA
*
82038974 TACTATCACTGCGCTGATTACTGT
1 TACTATCACTGCACTGATTACTGT
* *
82038998 TACTATTACTGCACTGTTTACTGT
1 TACTATCACTGCACTGATTACTGT
82039022 TACT
1 TACT
82039026 GCAATGGGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.42
Consensus pattern (24 bp):
TACTATCACTGCACTGATTACTGT
Found at i:82039024 original size:18 final size:17
Alignment explanation
Indices: 82038993--82039028 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
82038983 TGCGCTGATT
82038993 ACTGTTACTATTACTGC
1 ACTGTTACTATTACTGC
*
82039010 ACTGTTTACTGTTACTGC
1 ACTG-TTACTATTACTGC
82039028 A
1 A
82039029 ATGGGCCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (17 bp):
ACTGTTACTATTACTGC
Found at i:82042522 original size:27 final size:27
Alignment explanation
Indices: 82042492--82042862 Score: 420
Period size: 27 Copynumber: 13.7 Consensus size: 27
82042482 CCCTAATTGA
** *
82042492 TAAAATGGTTGTTTTGCCCTTAAGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
82042519 TAAAATGACTGTTTTGCCCTTATGTGA
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
82042546 TAAAATGACTATTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
82042573 TAAAATGACTATTTTGTCCTTAAGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
82042600 TAAAATGATTGTTTTGCCCTTATGTGA
1 TAAAATGACTGTTTTGCCCTTATGTGG
** *
82042627 TAAAATTTCTGTTCTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
82042654 TAAAATGACTATTTTTCCCTTAAGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
82042681 TAAAATGATTGTTTTGCCCTTATGTGA
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
82042708 TAAAATGATTGATCTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
82042735 TAAAATAACTATTTTGCCCTTAAGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
82042762 TAAAATGATTGTTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
82042789 TAAAATGACTATTCAT-CCTTTATGTGG
1 TAAAATGACTGTT-TTGCCCTTATGTGG
* *
82042816 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
82042843 TAAGATGATTGTTTTGCCCT
1 TAAAATGACTGTTTTGCCCT
82042863 ATTTGATGTA
Statistics
Matches: 287, Mismatches: 55, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.00
27 285 0.99
28 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:82042627 original size:81 final size:81
Alignment explanation
Indices: 82042503--82042862 Score: 546
Period size: 81 Copynumber: 4.4 Consensus size: 81
82042493 AAAATGGTTG
* * *
82042503 TTTTGCCCTTAAGTGGTAAAATGACTGTTTTGCCCTTATGTGATAAAATGACTATTTTTCCCTTA
1 TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGACTATTCTGCCCTTA
82042568 TGTGGTAAAATGACTA
66 TGTGGTAAAATGACTA
* ** *
82042584 TTTTGTCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATTTCTGTTCTGCCCTTA
1 TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGACTATTCTGCCCTTA
82042649 TGTGGTAAAATGACTA
66 TGTGGTAAAATGACTA
* *
82042665 TTTTTCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGATTGA-TCTGCCCTT
1 TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGACT-ATTCTGCCCTT
*
82042729 ATGTGGTAAAATAACTA
65 ATGTGGTAAAATGACTA
* * *
82042746 TTTTGCCCTTAAGTGGTAAAATGATTGTTTTTCCCTTATGTGGTAAAATGACTATTCAT-CCTTT
1 TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGACTATTC-TGCCCTT
82042810 ATGTGGTAAAATGACTA
65 ATGTGGTAAAATGACTA
*
82042827 TTTTGCCCTTATA-TGGTAAGATGATTGTTTTGCCCT
1 TTTTGCCCTTA-AGTGGTAAAATGATTGTTTTGCCCT
82042863 ATTTGATGTA
Statistics
Matches: 253, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
80 1 0.00
81 250 0.99
82 2 0.01
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (81 bp):
TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGACTATTCTGCCCTTA
TGTGGTAAAATGACTA
Found at i:82043211 original size:18 final size:18
Alignment explanation
Indices: 82043188--82043254 Score: 109
Period size: 18 Copynumber: 3.7 Consensus size: 18
82043178 AAGACTTGTA
82043188 TACTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
82043206 TACTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
*
82043224 AACTGTTACTGCACT-ATT
1 TACTGTTACTGCACTGA-T
82043242 TACTGTTACTGCA
1 TACTGTTACTGCA
82043255 ATGGGCCAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 1 0.02
18 45 0.98
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:82046646 original size:18 final size:18
Alignment explanation
Indices: 82046623--82046657 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
82046613 ATGAATCTCA
82046623 AAAATAAATATAAAAAAT
1 AAAATAAATATAAAAAAT
82046641 AAAATAAATATAAAAAA
1 AAAATAAATATAAAAAA
82046658 ATTAATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAATAAATATAAAAAAT
Found at i:82046990 original size:19 final size:19
Alignment explanation
Indices: 82046966--82047004 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
82046956 AGTAGACCAA
*
82046966 TTAAGTCTGTTGGGGTTGT
1 TTAAGTCTGTTAGGGTTGT
* *
82046985 TTAAGTTTTTTAGGGTTGT
1 TTAAGTCTGTTAGGGTTGT
82047004 T
1 T
82047005 AACTTCAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.03, G:0.31, T:0.54
Consensus pattern (19 bp):
TTAAGTCTGTTAGGGTTGT
Found at i:82054803 original size:43 final size:43
Alignment explanation
Indices: 82054754--82054904 Score: 196
Period size: 43 Copynumber: 3.5 Consensus size: 43
82054744 GACTACCGAG
82054754 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTGT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-T
* * *
82054798 -TGTGATTACATGTAAGACCATGTCTGAGACATTGACATCGTT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
* ** *
82054840 ATATGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCGAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
* * *
82054883 ATGAGATTACATGTAATACCAT
1 ATGTGATTACGTGTAAGACCAT
82054905 ATCCAGGACA
Statistics
Matches: 90, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
42 1 0.01
43 89 0.99
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
Found at i:82066227 original size:53 final size:55
Alignment explanation
Indices: 82066115--82066238 Score: 155
Period size: 53 Copynumber: 2.3 Consensus size: 55
82066105 AGTTAAGGAT
* * *
82066115 ACCATGTCAAGACATCGCATTGATGAGTTACTATAAGGTAAAGGTCCCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGTAAAGGTACCACGTAAG
* * * *
82066170 ACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGG-CAAGGATACCACGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGTAAAGG-TACCACGTAAG
82066223 ACCATGTCAAGACATG
1 ACCATGTCAAGACATG
82066239 AAAATGGTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.07
53 29 0.49
54 1 0.02
55 25 0.42
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (55 bp):
ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGTAAAGGTACCACGTAAG
Found at i:82074279 original size:49 final size:49
Alignment explanation
Indices: 82074226--82074442 Score: 225
Period size: 49 Copynumber: 4.5 Consensus size: 49
82074216 CTGGTACGCA
82074226 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * ** * *
82074275 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
* ** * * *
82074325 TAGTAACCTGCAC-T--TAC-ACGTGAT-CGA--AGTTAT-CGGATACGCA
1 TAGTAGCCTGCACTTAGTACTAC-ACATGCGACCAATTATCCGG-TACACG
* *
82074368 TAGTAGCCTGCATTTAGTACTACACATGCGACTAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
82074417 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
82074443 CGTGACCTCA
Statistics
Matches: 131, Mismatches: 26, Indels: 22
0.73 0.15 0.12
Matches are distributed among these distances:
42 1 0.01
43 18 0.14
44 1 0.01
46 9 0.07
47 9 0.07
49 66 0.50
50 27 0.21
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:82078011 original size:46 final size:46
Alignment explanation
Indices: 82077956--82078183 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
82077946 AGTGTGCTCT
*
82077956 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACAATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
82078002 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
82078048 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** **
82078094 GTGATATGAAATGAACAAGACCATGGTTGAAAGACGCCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
82078140 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
82078184 TCATGTCAAA
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 164 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:82088889 original size:38 final size:39
Alignment explanation
Indices: 82088805--82088939 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
82088795 ACCAATATGG
*
82088805 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
82088844 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
82088882 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATTTAG-TGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAA--TAGTTGA
*
82088923 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
82088940 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 35 0.47
40 3 0.04
41 16 0.21
42 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:82089951 original size:25 final size:25
Alignment explanation
Indices: 82089894--82089941 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82089884 TGTAACTTTC
* *
82089894 TTTCCTTTTTTTTACTTCTTTTACG
1 TTTCATTTGTTTTACTTCTTTTACG
*
82089919 TTTCATTTGTTTTATTTCTTTTA
1 TTTCATTTGTTTTACTTCTTTTA
82089942 TGTTATATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.10, C:0.15, G:0.04, T:0.71
Consensus pattern (25 bp):
TTTCATTTGTTTTACTTCTTTTACG
Found at i:82091485 original size:50 final size:50
Alignment explanation
Indices: 82091360--82091560 Score: 217
Period size: 50 Copynumber: 4.0 Consensus size: 50
82091350 ATGATCTATT
* * * * *
82091360 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAA
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATA
* * * * * **
82091411 CTGTGATCACGTGTGTAGTGCTAAGTGCAGGCTACTACGTGTATTAGATA
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
*
82091461 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TA
* * * *
82091511 GT-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
82091560 G
1 G
82091561 CTTCAGCTAC
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.01
49 41 0.33
50 46 0.37
51 37 0.30
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (50 bp):
GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
Found at i:82093744 original size:26 final size:26
Alignment explanation
Indices: 82093715--82093822 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82093705 TGGTACAAAT
82093715 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82093741 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82093767 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82093793 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82093819 TGAT
1 TGAT
82093823 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82095498 original size:54 final size:54
Alignment explanation
Indices: 82095416--82095560 Score: 238
Period size: 54 Copynumber: 2.7 Consensus size: 54
82095406 ATGGAGGAAG
82095416 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
* *
82095470 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATGTC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
* *
82095524 TGTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 TGTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
82095561 ACTCCGTCAC
Statistics
Matches: 86, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 80 0.93
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
Found at i:82095571 original size:27 final size:27
Alignment explanation
Indices: 82095420--82095575 Score: 176
Period size: 27 Copynumber: 5.8 Consensus size: 27
82095410 AGGAAGTGTC
*
82095420 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
82095447 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
82095474 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
82095501 CTGGTGGCTTTGCCACATATGTCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
82095528 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* * *
82095555 CTGGTGACTCCGTCACAATAT
1 CTGGTGGCTCTGCCACAATAT
82095576 TTGGTAGCCT
Statistics
Matches: 111, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
26 8 0.07
27 101 0.91
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:82095572 original size:81 final size:81
Alignment explanation
Indices: 82095420--82095573 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 81
82095410 AGGAAGTGTC
* *
82095420 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
82095485 GCCACAATTATCTGAT
66 GCCACAATTATCTGAT
* * * *
82095501 CTGGTGGCTTTGCCAC-ATATGTCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
* *
82095564 CCGTCACAAT
64 ACGCCACAAT
82095574 ATTTGGTAGC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 10 0.16
81 53 0.84
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
GCCACAATTATCTGAT
Found at i:82103308 original size:21 final size:18
Alignment explanation
Indices: 82103286--82103321 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
82103276 ACATAAATAA
82103286 GAAGAACATACGATTTAT
1 GAAGAACATACGATTTAT
82103304 GAAGAACATACGATTTAT
1 GAAGAACATACGATTTAT
82103322 CAAAAACCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (18 bp):
GAAGAACATACGATTTAT
Found at i:82111441 original size:4 final size:4
Alignment explanation
Indices: 82111432--82111459 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
82111422 TTCAACTTGG
82111432 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
82111460 ATGTCAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:82113221 original size:22 final size:22
Alignment explanation
Indices: 82113181--82113222 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
82113171 TTACATTATA
*
82113181 AAAAAAATTAAACACTATAAGT
1 AAAAAAATTAAACAATATAAGT
82113203 AAAAAAATTATAA-AATATAA
1 AAAAAAATTA-AACAATATAA
82113223 AATGAGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24
Consensus pattern (22 bp):
AAAAAAATTAAACAATATAAGT
Found at i:82113562 original size:16 final size:16
Alignment explanation
Indices: 82113541--82113571 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
82113531 GAGTATAGTA
82113541 AAATATTTAAAAAAAT
1 AAATATTTAAAAAAAT
82113557 AAATATTTAAAAAAA
1 AAATATTTAAAAAAA
82113572 GAGATATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATATTTAAAAAAAT
Found at i:82113578 original size:16 final size:16
Alignment explanation
Indices: 82113541--82113579 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
82113531 GAGTATAGTA
*
82113541 AAATATTTAAAAAAAT
1 AAATATTTAAAAAAAG
82113557 AAATATTTAAAAAAAG
1 AAATATTTAAAAAAAG
*
82113573 AGATATT
1 AAATATT
82113580 ATTTTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (16 bp):
AAATATTTAAAAAAAG
Found at i:82117903 original size:52 final size:52
Alignment explanation
Indices: 82117837--82118042 Score: 234
Period size: 53 Copynumber: 3.9 Consensus size: 52
82117827 ATATCATACT
* * * * *
82117837 GATGCCATATCCCAGATATGGTCTTACACGGAAGCACTTATCACTTTTCTCC
1 GATGCCATAGCCCAGCTATGGTCTTATACGGAATCACTTATCACTTTTATCC
*
82117889 GATGCCATAGCCCAGCTATGGTCTTATACGG-ATCACTTGTATCACTTTAATCC
1 GATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC-T-TATCACTTTTATCC
* * **
82117942 GAAGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATCACTTGTTTTTA
1 GATGCCATAGCCCAGCTATGGTCTTATACGG-AATCACTTATCACTT-TTATCC
* * * *
82117996 GATGTCATAGCCCAGCTATAGTCTTATAAGGATATCGCTTATCACTT
1 GATGCCATAGCCCAGCTATGGTCTTATACGGA-ATCACTTATCACTT
82118043 GTTGCCATGG
Statistics
Matches: 132, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
51 4 0.03
52 29 0.22
53 51 0.39
54 43 0.33
55 5 0.04
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.33
Consensus pattern (52 bp):
GATGCCATAGCCCAGCTATGGTCTTATACGGAATCACTTATCACTTTTATCC
Found at i:82123251 original size:6 final size:6
Alignment explanation
Indices: 82123240--82123281 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
82123230 GATGATTTGA
82123240 GCCCTT GCCCTT GCCCTT GCCCTT GCCCTT GCCCTT GCCCTT
1 GCCCTT GCCCTT GCCCTT GCCCTT GCCCTT GCCCTT GCCCTT
82123282 AGGCTCCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.17, T:0.33
Consensus pattern (6 bp):
GCCCTT
Found at i:82123865 original size:19 final size:18
Alignment explanation
Indices: 82123824--82123868 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
82123814 CGGGGTCTAT
82123824 TATTTTTACAAAATAATA
1 TATTTTTACAAAATAATA
* * *
82123842 TATTTTTTCAAATTATTA
1 TATTTTTACAAAATAATA
82123860 TAATTTTTA
1 T-ATTTTTA
82123869 TTATCTCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTTTTACAAAATAATA
Found at i:82131522 original size:88 final size:84
Alignment explanation
Indices: 82131368--82131617 Score: 249
Period size: 88 Copynumber: 2.9 Consensus size: 84
82131358 TTTTTTAAAT
* ** * *
82131368 TTTTTTAAAAAATACAATTAAGCTCTCCTTTTTTTTTTGCACTCAATTGGGTGTTTTAACTTTCA
1 TTTTTTAAAAAAT--AATTAAGC-C-CC-TATTTTTTTGCACTCAATTGGGTACTTAAACCTTCA
*
82131433 AAATGTATTAAAAAGGCCCT-CAAACC
61 AAATGCATTAAAAA-G-CCTACAAA-C
82131459 ATTTTTTAAAAAAGTAATTAAGCCCCTACTTTTTTT-CACTCAATTGGGTACTTAAACCTTCAAA
1 -TTTTTTAAAAAA-TAATTAAGCCCCTA-TTTTTTTGCACTCAATTGGGTACTTAAACCTTCAAA
82131523 ATGCATTAAAAAGCCTACAAAC
63 ATGCATTAAAAAGCCTACAAAC
*** *
82131545 -TTTTTAAAAAA-AATTAAGCCCCTGATTTTTTTGGCACTCAATAAAGTACTTAAA-CTTTAAAA
1 TTTTTTAAAAAATAATTAAGCCCCT-ATTTTTTT-GCACTCAATTGGGTACTTAAACCTTCAAAA
*
82131607 TGCATCAAAAA
64 TGCATTAAAAA
82131618 TACTTTTTGA
Statistics
Matches: 141, Mismatches: 11, Indels: 21
0.82 0.06 0.12
Matches are distributed among these distances:
82 19 0.13
83 18 0.13
84 28 0.20
86 4 0.03
87 5 0.04
88 36 0.26
89 9 0.06
90 1 0.01
91 8 0.06
92 12 0.09
93 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (84 bp):
TTTTTTAAAAAATAATTAAGCCCCTATTTTTTTGCACTCAATTGGGTACTTAAACCTTCAAAATG
CATTAAAAAGCCTACAAAC
Found at i:82131595 original size:84 final size:85
Alignment explanation
Indices: 82131429--82131617 Score: 219
Period size: 84 Copynumber: 2.2 Consensus size: 85
82131419 TGTTTTAACT
*
82131429 TTCAAAATGTATTAAAAAGGCCCTCAAACCATTTTTTAAAAAAGTAATTAAGCCCCTACTTTTTT
1 TTCAAAATGCATTAAAAAGGCCCTCAAACCA-TTTTTAAAAAAG-AATTAAGCCCCTACTTTTTT
***
82131494 TCACTCAATTGGGTACTTAAACC
64 TCACTCAATAAAGTACTTAAA-C
82131517 TTCAAAATGCATTAAAAA-G-CCTACAAA-C-TTTTTAAAAAA-AATTAAGCCCCTGA-TTTTTT
1 TTCAAAATGCATTAAAAAGGCCCT-CAAACCATTTTTAAAAAAGAATTAAGCCCCT-ACTTTTTT
82131576 TGGCACTCAATAAAGTACTTAAAC
64 T--CACTCAATAAAGTACTTAAAC
* *
82131600 TTTAAAATGCATCAAAAA
1 TTCAAAATGCATTAAAAA
82131618 TACTTTTTGA
Statistics
Matches: 91, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
82 19 0.21
83 18 0.20
84 28 0.31
86 4 0.04
87 5 0.05
88 17 0.19
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (85 bp):
TTCAAAATGCATTAAAAAGGCCCTCAAACCATTTTTAAAAAAGAATTAAGCCCCTACTTTTTTTC
ACTCAATAAAGTACTTAAAC
Found at i:82131660 original size:20 final size:20
Alignment explanation
Indices: 82131624--82131661 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
82131614 AAAATACTTT
**
82131624 TTGACCATTAACTTTAACAG
1 TTGACCATTAAAGTTAACAG
82131644 TTGACCATTAAAGTTAAC
1 TTGACCATTAAAGTTAAC
82131662 TGCTCCTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (20 bp):
TTGACCATTAAAGTTAACAG
Found at i:82131736 original size:10 final size:10
Alignment explanation
Indices: 82131723--82131860 Score: 60
Period size: 10 Copynumber: 14.4 Consensus size: 10
82131713 ACATGTGGCA
82131723 AAAAAATTAT
1 AAAAAATTAT
*
82131733 AAAAAA-TAG
1 AAAAAATTAT
*
82131742 AAATAA--AT
1 AAAAAATTAT
*
82131750 -AAAAGTTAT
1 AAAAAATTAT
82131759 -AAAAATTAT
1 AAAAAATTAT
* *
82131768 --TAAATTTT
1 AAAAAATTAT
*
82131776 AATAAAAATAT
1 AA-AAAATTAT
82131787 AAAAATATTAT
1 AAAAA-ATTAT
* *
82131798 -TAAAATTAGG
1 AAAAAATTA-T
82131808 AAAAAATTAT
1 AAAAAATTAT
* *
82131818 AAAATATTGT
1 AAAAAATTAT
**
82131828 AAAATTTTAT
1 AAAAAATTAT
* *
82131838 -AAAAGTCAT
1 AAAAAATTAT
82131847 AAAAAATTAT
1 AAAAAATTAT
82131857 AAAA
1 AAAA
82131861 TGCATCAAAA
Statistics
Matches: 94, Mismatches: 25, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
7 3 0.03
8 7 0.07
9 27 0.29
10 39 0.41
11 18 0.19
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:82131799 original size:30 final size:29
Alignment explanation
Indices: 82131759--82131861 Score: 93
Period size: 29 Copynumber: 3.5 Consensus size: 29
82131749 TAAAAGTTAT
*
82131759 AAAAATTATTAAATTTTAATAAAAATATA
1 AAAAATTATAAAATTTTAATAAAAATATA
** *
82131788 AAAATATTATTAAAATTAGGAA-AAAATTATA
1 AAAA-ATTA-TAAAATT-TTAATAAAAATATA
* * *
82131819 AAATATTGTAAAATTTT-ATAAAAGTCATA
1 AAAAATTATAAAATTTTAATAAAAAT-ATA
82131848 AAAAATTATAAAAT
1 AAAAATTATAAAAT
82131862 GCATCAAAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
27 1 0.02
28 5 0.09
29 26 0.45
30 7 0.12
31 17 0.29
32 2 0.03
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (29 bp):
AAAAATTATAAAATTTTAATAAAAATATA
Found at i:82132021 original size:10 final size:10
Alignment explanation
Indices: 82131983--82132190 Score: 84
Period size: 10 Copynumber: 21.2 Consensus size: 10
82131973 TTTTAGTACG
82131983 ATAA-TTTTT
1 ATAATTTTTT
82131992 ATAATTTTTTT
1 ATAA-TTTTTT
82132003 ATGAA--TTTT
1 AT-AATTTTTT
82132012 ATAATTTTTT
1 ATAATTTTTT
*
82132022 A-CATTTTTT
1 ATAATTTTTT
82132031 ATAATTTTCTT
1 ATAATTTT-TT
* *
82132042 ATGA--CTTT
1 ATAATTTTTT
**
82132050 ATAAAATTTT
1 ATAATTTTTT
82132060 ATAATTGTTTT
1 ATAATT-TTTT
* *
82132071 -T-GTATTTCT
1 ATAAT-TTTTT
82132080 AT-ATATTTTT
1 ATAAT-TTTTT
82132090 -TAATTTTTT
1 ATAATTTTTT
*
82132099 ATGA-TTTTT
1 ATAATTTTTT
**
82132108 ATAAAATTTT
1 ATAATTTTTT
* *
82132118 ACAA-ATTTT
1 ATAATTTTTT
82132127 ATATATTTTTT
1 ATA-ATTTTTT
*
82132138 A-ATATTTTCAT
1 ATA-ATTTT-TT
*
82132149 AAAATTTTTT
1 ATAATTTTTT
* *
82132159 GTAATTTTTA
1 ATAATTTTTT
82132169 ATAA-TTTTT
1 ATAATTTTTT
82132178 ATATATTTTTT
1 ATA-ATTTTTT
82132189 AT
1 AT
82132191 TAAAATTTAA
Statistics
Matches: 153, Mismatches: 25, Indels: 40
0.70 0.11 0.18
Matches are distributed among these distances:
8 7 0.05
9 51 0.33
10 57 0.37
11 35 0.23
12 3 0.02
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:82132021 original size:19 final size:19
Alignment explanation
Indices: 82131988--82132138 Score: 76
Period size: 19 Copynumber: 7.8 Consensus size: 19
82131978 GTACGATAAT
82131988 TTTTATAATTTTTTTATGAA
1 TTTTATAA-TTTTTTATGAA
* *
82132008 TTTTATAATTTTTTA-CATT
1 TTTTATAATTTTTTATGA-A
82132027 TTTTATAATTTTCTTATG-A
1 TTTTATAATTTT-TTATGAA
* **
82132046 CTTTATAAAATTTTAT-AA
1 TTTTATAATTTTTTATGAA
* ** *
82132064 TTGTTTTTGTATTTCTAT-ATA
1 TT-TTATAAT-TTTTTATGA-A
* *
82132085 TTTTTTAATTTTTTATGAT
1 TTTTATAATTTTTTATGAA
** **
82132104 TTTTATAAAATTTTACAAA
1 TTTTATAATTTTTTATGAA
82132123 TTTTATATATTTTTTA
1 TTTTATA-ATTTTTTA
82132139 ATATTTTCAT
Statistics
Matches: 96, Mismatches: 26, Indels: 18
0.69 0.19 0.13
Matches are distributed among these distances:
18 7 0.07
19 57 0.59
20 29 0.30
21 3 0.03
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTTATAATTTTTTATGAA
Found at i:82132188 original size:31 final size:30
Alignment explanation
Indices: 82132123--82132237 Score: 85
Period size: 31 Copynumber: 3.8 Consensus size: 30
82132113 ATTTTACAAA
* *
82132123 TTTTATATATTTTTTAATATTTTCATAAAAT
1 TTTTAT-TAATTTTTAATATTTTTATAAAAT
* *
82132154 TTTT-TGTAATTTTTAATAATTTTTATATATT
1 TTTTAT-TAATTTTTAAT-ATTTTTATAAAAT
** *
82132185 TTTTATTAAAATTTAATTATTTTTAT--AAC
1 TTTTATTAATTTTTAA-TATTTTTATAAAAT
* *
82132214 TTTTATTGATTTTT-ATTTTTTTAT
1 TTTTATTAATTTTTAATATTTTTAT
82132238 CATTTTTTGT
Statistics
Matches: 68, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
27 8 0.12
28 1 0.01
29 12 0.18
30 11 0.16
31 34 0.50
32 2 0.03
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (30 bp):
TTTTATTAATTTTTAATATTTTTATAAAAT
Found at i:82137974 original size:128 final size:127
Alignment explanation
Indices: 82137703--82138032 Score: 405
Period size: 127 Copynumber: 2.6 Consensus size: 127
82137693 TATTTAGTCC
* * * * **
82137703 AACAAAAAACCGAAACCCAGCATGGTAGGGCACGATTC-CTCGAACTTCCAAACATTGAACATTG
1 AACAAGAAATCGAAACCCAGCACGGTAGGGCACGATTCTC-CGAATTTCCAAACATCAAACATTG
* * * * * *
82137767 CCTTGTTTTAGAATTTACAGAATACGAATGAAATTCTAAAGGAATATTTGATTATTTTGAACA
65 CCTTGTTTTAAAATTTAAAAAACACGAATGAAATTCTAAAGGAAGATTCGATTATTTTGAACA
* * * *
82137830 AACAAGAAATCAAAACCCAGCACGATAGGGCACGGTTCTCCGAATTTCCAAGCATCAAACATTGC
1 AACAAGAAATCGAAACCCAGCACGGTAGGGCACGATTCTCCGAATTTCCAAACATCAAACATTGC
* *
82137895 GTTGTTTTAAAATTTAGAAAAACACGAATGAAATTCTAAAGGAAGGTTCGATTATTTTGAACA
66 CTTGTTTTAAAATTTA-AAAAACACGAATGAAATTCTAAAGGAAGATTCGATTATTTTGAACA
** * *
82137958 AACGGGAAATCGAAACCTAG-ACGGTAGGGCACGATT-TACTGAATTTCCAAACATCAAACATTG
1 AACAAGAAATCGAAACCCAGCACGGTAGGGCACGATTCT-CCGAATTTCCAAACATCAAACATTG
82138021 CCTTCGTTTTAA
65 CCTT-GTTTTAA
82138033 GGAATTTTTA
Statistics
Matches: 172, Mismatches: 27, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
126 1 0.01
127 107 0.62
128 64 0.37
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (127 bp):
AACAAGAAATCGAAACCCAGCACGGTAGGGCACGATTCTCCGAATTTCCAAACATCAAACATTGC
CTTGTTTTAAAATTTAAAAAACACGAATGAAATTCTAAAGGAAGATTCGATTATTTTGAACA
Found at i:82139004 original size:19 final size:17
Alignment explanation
Indices: 82138978--82139013 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
82138968 ATAATATGAT
82138978 ATATAAAAAACTTCAAA
1 ATATAAAAAACTTCAAA
82138995 ATATAAAAAACTTCAAA
1 ATATAAAAAACTTCAAA
82139012 AT
1 AT
82139014 GGTAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.25
Consensus pattern (17 bp):
ATATAAAAAACTTCAAA
Found at i:82141156 original size:133 final size:133
Alignment explanation
Indices: 82140918--82141295 Score: 578
Period size: 133 Copynumber: 2.8 Consensus size: 133
82140908 TAACTGCTCG
* * *
82140918 ACTGCAACTTCAGGGAGATAAGGTTAATGGCTTCGATCTGCTCCACTGTAACTTCAAGGAGATAA
1 ACTGCATCTTCAGGGAGATAAGGTTAATGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAA
* *
82140983 -AGTTCACCATCTTCAGTCTGCCCCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAACCTA
66 GA-TTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTA
* *
82141047 CTTC
130 ATCC
82141051 ACTGCATCTTCAGGGAGATAAGGTTAATGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAA
1 ACTGCATCTTCAGGGAGATAAGGTTAATGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAA
*
82141116 GATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGAGATAAAACTTGTAACTTCAACCTAA
66 GATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTAA
82141181 TCC
131 TCC
* * * * * *
82141184 ACTGCATCTTCAGAGAGATAGGGTTAATGTCTTCAATCTGCACCACTACAACTTCAGGGAGATAA
1 ACTGCATCTTCAGGGAGATAAGGTTAATGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * *
82141249 GATTCGCCATCTTCAGTCTGCTCCACTACAACTTCAAGAAGATAAGA
66 GATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGAGATAAGA
82141296 TTTGCCATAA
Statistics
Matches: 225, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
133 224 1.00
134 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (133 bp):
ACTGCATCTTCAGGGAGATAAGGTTAATGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAA
GATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTAA
TCC
Found at i:82141294 original size:45 final size:44
Alignment explanation
Indices: 82140911--82141303 Score: 269
Period size: 44 Copynumber: 8.8 Consensus size: 44
82140901 TCTACTGTAA
* * * *
82140911 CTGCTCGACTGCAACTTCAGGGAGATAAGGTT--AATGGCTTCGAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTGCCAT--CTTCAAT
* * * *
82140955 CTGCTCCACTGTAACTTCAAGGAGATAA-AGTTCACCATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-GCCATCTTCAAT
* * * * *
82141000 CTGCCCCACTGCAACTTTAGGGAGATAAGACTTG-TAACTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCCATCTTCAAT
* * * * * *
82141044 CTACTTCACTGCATCTTCAGGGAGATAAGGTT--AATGGCTTCGAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTGCCAT--CTTCAAT
*
82141088 CTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCCATCTTCAAT
* * * * *
82141133 CTGCCCCACTGCAACTTCAGGGAGATAAAACTTG-TAACTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCCATCTTCAAT
** * * * * ****
82141177 CTAATCCACTGCATCTTCAGAGAGATAGGGTTAATGTCTTCAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTGCCATCTTCAAT
* * *
82141221 CTGCACCACTACAACTTCAGGGAGATAAGATTCGCCATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCCATCTTCAAT
* * *
82141266 CTGCTCCACTACAACTTCAAGAAGATAAGATTTGCCAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCCAT
82141304 AATTCGTAGC
Statistics
Matches: 267, Mismatches: 68, Indels: 27
0.74 0.19 0.07
Matches are distributed among these distances:
42 1 0.00
43 4 0.01
44 149 0.56
45 102 0.38
46 7 0.03
47 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGATTGCCATCTTCAAT
Found at i:82152961 original size:129 final size:127
Alignment explanation
Indices: 82152697--82153022 Score: 445
Period size: 129 Copynumber: 2.5 Consensus size: 127
82152687 GTCTAACAAA
* * * *
82152697 AAATCGAAACCTAGCACGGTAGGGCACGATTCCTCGAACTTCCAAACATTGAACATTGCCTTGTT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTT
* * * *
82152762 TTAGAATTTAAAGAATACGAACGAAATTCTAAAGGAATATTTGATTATTTTGAACAAAAGAG
66 TTAAAATTTAAAGAAAACGAACGAAATTCTAAAGGAAGATTCGATTATTTTGAACAAAAGAG
* * * * * *
82152824 AAATCGAAACCCAACACGATAGGGCACGGTTCCCCAAATTTCCAAGCATCGAACATTGCATTGTT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTT
* * * *
82152889 TTAAAATTTAGAAGAAAAACGAATGAAATTCTAAAGGAAGGTTCGATTATTTTGAACAAACGGG
66 TTAAAATTTA-AAG-AAAACGAACGAAATTCTAAAGGAAGATTCGATTATTTTGAACAAAAGAG
* *
82152953 AAATCGAAACCCAGCACGGTAGGGCACGATTTCCCGAATTTCCAAACATCAAACATTGCCTTCGT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCCTT-GT
82153018 TTTAA
65 TTTAA
82153023 GGAATTTTTA
Statistics
Matches: 170, Mismatches: 26, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
127 64 0.38
128 3 0.02
129 96 0.56
130 7 0.04
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (127 bp):
AAATCGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTT
TTAAAATTTAAAGAAAACGAACGAAATTCTAAAGGAAGATTCGATTATTTTGAACAAAAGAG
Found at i:82153185 original size:47 final size:47
Alignment explanation
Indices: 82153116--82153211 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
82153106 CGTTGGAAAG
82153116 TATAAAGTGATATTTGTAAACCAAAAAGGAAAAATAAAAACATGGGA
1 TATAAAGTGATATTTGTAAACCAAAAAGGAAAAATAAAAACATGGGA
*
82153163 TATAAAGTGATATTTGTAAACCAATAAGGAAAAATAAAAACATGGGA
1 TATAAAGTGATATTTGTAAACCAAAAAGGAAAAATAAAAACATGGGA
82153210 TA
1 TA
82153212 ACATGCATGT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (47 bp):
TATAAAGTGATATTTGTAAACCAAAAAGGAAAAATAAAAACATGGGA
Found at i:82165957 original size:20 final size:20
Alignment explanation
Indices: 82165932--82165971 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
82165922 CAGAGTTCGC
82165932 CTACAATAACAGCTTCCAAT
1 CTACAATAACAGCTTCCAAT
82165952 CTACAATAACAGCTTCCAAT
1 CTACAATAACAGCTTCCAAT
82165972 TTAGCATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.30, G:0.05, T:0.25
Consensus pattern (20 bp):
CTACAATAACAGCTTCCAAT
Found at i:82170070 original size:43 final size:43
Alignment explanation
Indices: 82170022--82170106 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
82170012 AACATGTTAG
82170022 TCATTACTTCACATAAATTTCAAGAATCAAAGATGAACTCATA
1 TCATTACTTCACATAAATTTCAAGAATCAAAGATGAACTCATA
82170065 TCATTACTTCACATAAATTTCAAGAATCAAAGATGAACTCAT
1 TCATTACTTCACATAAATTTCAAGAATCAAAGATGAACTCAT
82170107 CATGTAGTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.31
Consensus pattern (43 bp):
TCATTACTTCACATAAATTTCAAGAATCAAAGATGAACTCATA
Found at i:82170213 original size:75 final size:75
Alignment explanation
Indices: 82170128--82170277 Score: 291
Period size: 75 Copynumber: 2.0 Consensus size: 75
82170118 TTTCATAAAC
*
82170128 ATGTGCTTTTCATATTATATTTCCATATAACATGTGCATTTCATATAACAAATCATCTTAAGTTC
1 ATGTGCTTTTCATATCATATTTCCATATAACATGTGCATTTCATATAACAAATCATCTTAAGTTC
82170193 ATTTTAACCA
66 ATTTTAACCA
82170203 ATGTGCTTTTCATATCATATTTCCATATAACATGTGCATTTCATATAACAAATCATCTTAAGTTC
1 ATGTGCTTTTCATATCATATTTCCATATAACATGTGCATTTCATATAACAAATCATCTTAAGTTC
82170268 ATTTTAACCA
66 ATTTTAACCA
82170278 TGTTAGAACT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (75 bp):
ATGTGCTTTTCATATCATATTTCCATATAACATGTGCATTTCATATAACAAATCATCTTAAGTTC
ATTTTAACCA
Found at i:82170613 original size:25 final size:25
Alignment explanation
Indices: 82170585--82170634 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
82170575 TTCAAGTGAG
82170585 CTATATCAAGGA-GCTCACAAAGAGC
1 CTATATC-AGGACGCTCACAAAGAGC
*
82170610 CTATATCAGGACGCTCATAAAGAGC
1 CTATATCAGGACGCTCACAAAGAGC
82170635 TGCGTTTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (25 bp):
CTATATCAGGACGCTCACAAAGAGC
Found at i:82173730 original size:29 final size:30
Alignment explanation
Indices: 82173674--82173736 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
82173664 TATTAAAATC
*
82173674 ATATATGAATTTTGATTTAATGTGTAATGTT
1 ATATATGAATTTTGATTT-ATGTATAATGTT
*
82173705 ATATATGAATTTTGATTT-TGTATAATTTT
1 ATATATGAATTTTGATTTATGTATAATGTT
82173734 ATA
1 ATA
82173737 CATAAAACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 12 0.40
31 18 0.60
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (30 bp):
ATATATGAATTTTGATTTATGTATAATGTT
Found at i:82174088 original size:18 final size:19
Alignment explanation
Indices: 82174064--82174122 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 19
82174054 GGACAAAAGG
82174064 AGTAAATACAATTAAATGA
1 AGTAAATACAATTAAATGA
** * * *
82174083 AG-AAATAGGA-CAAAAGG
1 AGTAAATACAATTAAATGA
82174100 AGTAAATACAATTAAATGA
1 AGTAAATACAATTAAATGA
82174119 AGTA
1 AGTA
82174123 TAATGTGTAT
Statistics
Matches: 28, Mismatches: 10, Indels: 4
0.67 0.24 0.10
Matches are distributed among these distances:
17 6 0.21
18 12 0.43
19 10 0.36
ACGTcount: A:0.58, C:0.05, G:0.17, T:0.20
Consensus pattern (19 bp):
AGTAAATACAATTAAATGA
Found at i:82174088 original size:36 final size:36
Alignment explanation
Indices: 82174047--82174120 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
82174037 AAATGGTAGT
82174047 AGAAATAGGACAAAAGGAGTAAATACAATTAAATGA
1 AGAAATAGGACAAAAGGAGTAAATACAATTAAATGA
82174083 AGAAATAGGACAAAAGGAGTAAATACAATTAAATGA
1 AGAAATAGGACAAAAGGAGTAAATACAATTAAATGA
82174119 AG
1 AG
82174121 TATAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.58, C:0.05, G:0.20, T:0.16
Consensus pattern (36 bp):
AGAAATAGGACAAAAGGAGTAAATACAATTAAATGA
Found at i:82180820 original size:21 final size:21
Alignment explanation
Indices: 82180781--82180820 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
82180771 AAATATGGAC
* **
82180781 AAATTGAGATTGTGTAAATTG
1 AAATTGAAATTGTAAAAATTG
82180802 AAATTGAAATTGTAAAAAT
1 AAATTGAAATTGTAAAAAT
82180821 AAACAGAGTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.35
Consensus pattern (21 bp):
AAATTGAAATTGTAAAAATTG
Found at i:82182188 original size:7 final size:7
Alignment explanation
Indices: 82182176--82182223 Score: 78
Period size: 7 Copynumber: 6.9 Consensus size: 7
82182166 TCCCTCTCTT
82182176 TTTTTTC
1 TTTTTTC
82182183 TTTTTTC
1 TTTTTTC
82182190 TTTTTTC
1 TTTTTTC
*
82182197 CTTTTTC
1 TTTTTTC
82182204 TTTTTTC
1 TTTTTTC
*
82182211 GTTTTTC
1 TTTTTTC
82182218 TTTTTT
1 TTTTTT
82182224 TAAGAATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:82192917 original size:19 final size:18
Alignment explanation
Indices: 82192893--82192931 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
82192883 TTGTTTGATA
82192893 AAAATAAATATTAATTTTT
1 AAAAT-AATATTAATTTTT
*
82192912 AAAATATTATTAATTTTT
1 AAAATAATATTAATTTTT
82192930 AA
1 AA
82192932 TTTTAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
AAAATAATATTAATTTTT
Found at i:82192973 original size:22 final size:21
Alignment explanation
Indices: 82192930--82192977 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
82192920 ATTAATTTTT
82192930 AATTTTAATTTTATTAATATA
1 AATTTTAATTTTATTAATATA
82192951 ATATTTTATATTATT-TTAA-ATA
1 A-ATTTTA-ATT-TTATTAATATA
82192973 AATTT
1 AATTT
82192978 GGATGAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
21 5 0.21
22 10 0.42
23 7 0.29
24 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
AATTTTAATTTTATTAATATA
Found at i:82194051 original size:13 final size:13
Alignment explanation
Indices: 82194028--82194061 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
82194018 CAAAACAGAC
82194028 TTTTAGTGGCATTT
1 TTTTAG-GGCATTT
82194042 TTTTAGGGCATTT
1 TTTTAGGGCATTT
82194055 TTTTAGG
1 TTTTAGG
82194062 CCTATAAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.15, C:0.06, G:0.24, T:0.56
Consensus pattern (13 bp):
TTTTAGGGCATTT
Found at i:82203050 original size:15 final size:15
Alignment explanation
Indices: 82203027--82203065 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
82203017 CTTGGCTTGC
*
82203027 ATTTTGAAATACAAA
1 ATTTAGAAATACAAA
82203042 ATTTAGAAATACAAA
1 ATTTAGAAATACAAA
82203057 ATTTAGAAA
1 ATTTAGAAA
82203066 AGTTTTTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (15 bp):
ATTTAGAAATACAAA
Found at i:82203211 original size:9 final size:9
Alignment explanation
Indices: 82203197--82203401 Score: 116
Period size: 9 Copynumber: 22.0 Consensus size: 9
82203187 TAAGTATAAT
82203197 TAAGTTATG
1 TAAGTTATG
82203206 TAAGTTATG
1 TAAGTTATG
* * *
82203215 ATATGATATC
1 -TAAGTTATG
*
82203225 T-ATTTATG
1 TAAGTTATG
82203233 T-A-TTATG
1 TAAGTTATG
82203240 TAAGTTATG
1 TAAGTTATG
82203249 TAAGTTATG
1 TAAGTTATG
*
82203258 TGAGGTGAGGTATG
1 T-A----AGTTATG
82203272 TAAGTTATG
1 TAAGTTATG
*
82203281 TGAGTTATG
1 TAAGTTATG
82203290 TAAGTTATG
1 TAAGTTATG
* *
82203299 ATATGATATATA
1 -TAAG-T-TATG
82203311 TAAGTTATTATG
1 TAAG---TTATG
*
82203323 TAAGTTGTG
1 TAAGTTATG
*
82203332 TGAGTTATG
1 TAAGTTATG
82203341 TAAGTTATG
1 TAAGTTATG
* * *
82203350 ATATGATATA
1 -TAAGTTATG
*
82203360 T-ATTTATG
1 TAAGTTATG
82203368 T-A-TTATG
1 TAAGTTATG
82203375 TAAGTTATG
1 TAAGTTATG
*
82203384 TAAATTATG
1 TAAGTTATG
82203393 TAAGTTATG
1 TAAGTTATG
82203402 AAATTTAAAC
Statistics
Matches: 152, Mismatches: 28, Indels: 32
0.72 0.13 0.15
Matches are distributed among these distances:
7 12 0.08
8 12 0.08
9 88 0.58
10 16 0.11
11 4 0.03
12 10 0.07
13 3 0.02
14 7 0.05
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:82203334 original size:51 final size:52
Alignment explanation
Indices: 82203268--82203402 Score: 211
Period size: 51 Copynumber: 2.6 Consensus size: 52
82203258 TGAGGTGAGG
82203268 TATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATA-TAA-GTTAT
1 TATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATATTAATG-TAT
* *
82203319 TATGTAAGTTGTGTGAGTTATGTAAGTTATGATATGATATATATTTATGTAT
1 TATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATATTAATGTAT
* *
82203371 TATGTAAGTTATGTAAATTATGTAAGTTATGA
1 TATGTAAGTTATGTGAGTTATGTAAGTTATGA
82203403 AATTTAAACT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
51 42 0.55
52 34 0.44
53 1 0.01
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (52 bp):
TATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATATTAATGTAT
Found at i:82205926 original size:38 final size:39
Alignment explanation
Indices: 82205842--82205976 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
82205832 ACCAATATGG
*
82205842 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
82205881 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
82205919 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
82205960 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
82205977 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:82207553 original size:5 final size:5
Alignment explanation
Indices: 82207535--82207565 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
82207525 GTTTCTTTAT
82207535 ATATA ATAATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA
82207566 CTTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:82209846 original size:40 final size:40
Alignment explanation
Indices: 82209770--82209879 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
82209760 AATTAAACTT
* * *
82209770 TTTA-CGGCATTTTTGAAAAAGC-CCGCTAATTCTCGATC
1 TTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATACTCGATC
* *
82209808 TTTAGCGTCGTTTTTCAAAAAGCGCTGCTAATACTCGATC
1 TTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATACTCGATC
*
82209848 TTTAGCGGCGTTTTTCAAAAAGCGCCGTTAAT
1 TTTAGCGGCGTTTTTCAAAAAGCGCCGCTAAT
82209880 GCCACTAGGT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 4 0.06
39 15 0.24
40 43 0.69
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATACTCGATC
Found at i:82210382 original size:15 final size:15
Alignment explanation
Indices: 82210364--82210393 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82210354 ACTATACATT
*
82210364 AAACCCTAAACCATA
1 AAACCATAAACCATA
82210379 AAACCATAAACCATA
1 AAACCATAAACCATA
82210394 GACCTTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.13
Consensus pattern (15 bp):
AAACCATAAACCATA
Found at i:82210565 original size:22 final size:21
Alignment explanation
Indices: 82210537--82210609 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 21
82210527 AATTTTTTTG
82210537 GGGTTTAAGGTTTTAGGATTTA
1 GGGTTTAAGGTTTTAGGA-TTA
* * *
82210559 GGGTTTATGTTTTTAGAAATTA
1 GGGTTTAAGGTTTTAG-GATTA
*
82210581 GGGTTTAAGGTTTAAGGATTA
1 GGGTTTAAGGTTTTAGGATTA
82210602 GGGGTTTA
1 -GGGTTTA
82210610 GAGAAAGCCA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
21 4 0.10
22 37 0.88
23 1 0.02
ACGTcount: A:0.25, C:0.00, G:0.32, T:0.44
Consensus pattern (21 bp):
GGGTTTAAGGTTTTAGGATTA
Found at i:82211043 original size:40 final size:41
Alignment explanation
Indices: 82210945--82211052 Score: 148
Period size: 42 Copynumber: 2.6 Consensus size: 41
82210935 CGTTTGGATT
* *
82210945 AAAAACGCCTCTATTGCTCAGTTTTTAGTGGCTTTTTGACCA
1 AAAAACGCCGCTATTGCTCAGTTTTTAGTGGC-TTTGGACCA
* *
82210987 AAAAATGCCGCCATTGCTCAGTTTTTAGTGGGC-TTGGACC-
1 AAAAACGCCGCTATTGCTCAGTTTTTAGT-GGCTTTGGACCA
82211027 AAAAACGCCGCTATTGCTCAGTTTTT
1 AAAAACGCCGCTATTGCTCAGTTTTT
82211053 TGCTGCCTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
40 24 0.41
41 6 0.10
42 26 0.44
43 3 0.05
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (41 bp):
AAAAACGCCGCTATTGCTCAGTTTTTAGTGGCTTTGGACCA
Found at i:82212118 original size:22 final size:22
Alignment explanation
Indices: 82212070--82212119 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
82212060 ATTTATTAAT
* **
82212070 AATA-AAGTGACATAACTTTTC
1 AATATAAGAGACATAACTCATC
82212091 AATATAAGAGACATAACTCATC
1 AATATAAGAGACATAACTCATC
*
82212113 ACTATAA
1 AATATAA
82212120 ATAACGACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (22 bp):
AATATAAGAGACATAACTCATC
Found at i:82227669 original size:42 final size:42
Alignment explanation
Indices: 82227572--82227671 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 42
82227562 CGGGCTTTGA
* * *
82227572 GCCTAGCAAGCCTTGTGCTGGTGTATTAAATCGGGATTTATT
1 GCCTAGCAAGCTTTATGCCGGTGTATTAAATCGGGATTTATT
* * *
82227614 GCCTAGCAGGCTTTATGCCGGTGTATTATATCGGGCTTTATT
1 GCCTAGCAAGCTTTATGCCGGTGTATTAAATCGGGATTTATT
*
82227656 GCCTAGCATGCTTTAT
1 GCCTAGCAAGCTTTAT
82227672 TGCCTAGCAG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (42 bp):
GCCTAGCAAGCTTTATGCCGGTGTATTAAATCGGGATTTATT
Found at i:82227670 original size:17 final size:17
Alignment explanation
Indices: 82227647--82227688 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
82227637 TATTATATCG
82227647 GGCTTTATTGCCTAGCA
1 GGCTTTATTGCCTAGCA
*
82227664 TGCTTTATTGCCTAGCA
1 GGCTTTATTGCCTAGCA
82227681 GGCTTTAT
1 GGCTTTAT
82227689 GCCAGTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.40
Consensus pattern (17 bp):
GGCTTTATTGCCTAGCA
Found at i:82227674 original size:59 final size:58
Alignment explanation
Indices: 82227608--82227721 Score: 183
Period size: 59 Copynumber: 1.9 Consensus size: 58
82227598 TAAATCGGGA
* * *
82227608 TTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATATCGGGCTTTATTGCCTAGCATGC
1 TTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATATCAGGC-CTATTGCCTAGCATGC
*
82227667 TTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATGTCAGGCCTATTGCCTAGCA
1 TTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATATCAGGCCTATTGCCTAGCA
82227722 GGTTCTATGC
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
58 12 0.24
59 39 0.76
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (58 bp):
TTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATATCAGGCCTATTGCCTAGCATGC
Found at i:82227758 original size:41 final size:42
Alignment explanation
Indices: 82227665--82227762 Score: 123
Period size: 41 Copynumber: 2.4 Consensus size: 42
82227655 TGCCTAGCAT
*
82227665 GCTTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATGTCAG
1 GCTTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATCTCAG
* *
82227707 GC-CTATTGCCTAGCAGG-TTCTATGCCGGTGTATTATACT-AG
1 GCTTTATTGCCTAGCAGGCTT-TATGCCAGTGTATTAT-CTCAG
82227748 GCTTTA-TGCCTAGCA
1 GCTTTATTGCCTAGCA
82227763 AATTTTATGT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
40 2 0.04
41 42 0.86
42 5 0.10
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.36
Consensus pattern (42 bp):
GCTTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATCTCAG
Found at i:82232364 original size:20 final size:19
Alignment explanation
Indices: 82232319--82232365 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
82232309 AGCCCATTCC
*
82232319 AATTTAA-AAATTAATATA
1 AATTTAATAAATTAATAAA
**
82232337 AAGATAATAATATTAATAAA
1 AATTTAATAA-ATTAATAAA
82232357 AATTTAATA
1 AATTTAATA
82232366 TAAAAAAAAG
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 5 0.23
19 2 0.09
20 15 0.68
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
AATTTAATAAATTAATAAA
Found at i:82238479 original size:9 final size:9
Alignment explanation
Indices: 82238465--82238495 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
82238455 TCTTAAATTT
82238465 TTTTTTTAC
1 TTTTTTTAC
82238474 TTTTTTTAC
1 TTTTTTTAC
82238483 -TTTTTTAC
1 TTTTTTTAC
82238491 TTTTT
1 TTTTT
82238496 CTTATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:82238486 original size:7 final size:8
Alignment explanation
Indices: 82238466--82238495 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
82238456 CTTAAATTTT
82238466 TTTTTTAC
1 TTTTTTAC
82238474 TTTTTTTAC
1 -TTTTTTAC
82238483 TTTTTTAC
1 TTTTTTAC
82238491 TTTTT
1 TTTTT
82238496 CTTATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTTAC
Found at i:82238505 original size:17 final size:17
Alignment explanation
Indices: 82238468--82238505 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
82238458 TAAATTTTTT
*
82238468 TTTTACTTTTTTTACTT
1 TTTTACTTTTTTTACTA
82238485 TTTTACTTTTTCTTA-TA
1 TTTTACTTTTT-TTACTA
82238502 TTTT
1 TTTT
82238506 GTCTCTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTACTTTTTTTACTA
Found at i:82238505 original size:18 final size:18
Alignment explanation
Indices: 82238467--82238524 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
82238457 TTAAATTTTT
82238467 TTTTTACTTTTT-TTACT-
1 TTTTTACTTTTTCTTA-TA
82238484 TTTTTACTTTTTCTTATA
1 TTTTTACTTTTTCTTATA
* *
82238502 TTTTGT-CTCTTTCTTAGA
1 TTTT-TACTTTTTCTTATA
82238520 TTTTT
1 TTTTT
82238525 TTCTTTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
17 14 0.39
18 21 0.58
19 1 0.03
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.72
Consensus pattern (18 bp):
TTTTTACTTTTTCTTATA
Found at i:82238580 original size:36 final size:36
Alignment explanation
Indices: 82238511--82238584 Score: 98
Period size: 36 Copynumber: 2.0 Consensus size: 36
82238501 ATTTTGTCTC
*
82238511 TTTCTTAGATTTTTTTCTTTTTTAAGTTTTATATTAT
1 TTTCTTAGATTTTTTTCTTATTTAAG-TTTATATTAT
82238548 TTTCTTA-ATTTATTTTACTTATTTAA-TTTATATTAT
1 TTTCTTAGATTT-TTTT-CTTATTTAAGTTTATATTAT
82238584 T
1 T
82238585 AATTTTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
36 15 0.44
37 11 0.32
38 8 0.24
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (36 bp):
TTTCTTAGATTTTTTTCTTATTTAAGTTTATATTAT
Found at i:82238589 original size:18 final size:17
Alignment explanation
Indices: 82238538--82238585 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
82238528 TTTTTTAAGT
*
82238538 TTTATATTATTTTCTTAA
1 TTTATATTATTAT-TTAA
*
82238556 TTTATTTTACTTATTTAA
1 TTTATATTA-TTATTTAA
82238574 TTTATATTATTA
1 TTTATATTATTA
82238586 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATATTATTATTTAA
Found at i:82238598 original size:23 final size:22
Alignment explanation
Indices: 82238572--82238662 Score: 64
Period size: 23 Copynumber: 4.1 Consensus size: 22
82238562 TTACTTATTT
*
82238572 AATTTATATTATTAATTTTAAAA
1 AATTTATAATATT-ATTTTAAAA
*
82238595 AATTTGTAATA-TATATTTAAAA
1 AATTTATAATATTAT-TTTAAAA
**
82238617 TGTTTTATAATATT-TTTT--AA
1 -AATTTATAATATTATTTTAAAA
* *
82238637 AATTTTTAATTATTATTTTTAAA
1 AATTTATAA-TATTATTTTAAAA
82238660 AAT
1 AAT
82238663 ATTTTTTTAC
Statistics
Matches: 53, Mismatches: 8, Indels: 14
0.71 0.11 0.19
Matches are distributed among these distances:
19 6 0.11
20 6 0.11
21 6 0.11
22 11 0.21
23 23 0.43
24 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
AATTTATAATATTATTTTAAAA
Found at i:82238629 original size:21 final size:21
Alignment explanation
Indices: 82238574--82238654 Score: 65
Period size: 23 Copynumber: 3.7 Consensus size: 21
82238564 ACTTATTTAA
* **
82238574 TTTATATTATTAATTTTAAAAAA
1 TTTATAATATT-A-TTTAAAATT
*
82238597 TTTGTAATATATATTTAAAATGT
1 TTTATAATAT-TATTTAAAAT-T
*
82238620 TTTATAATATTTTTTAAAATT
1 TTTATAATATTATTTAAAATT
*
82238641 TTTA-ATTATTATTT
1 TTTATAATATTATTT
82238655 TTAAAAATAT
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
20 8 0.17
21 5 0.10
22 16 0.33
23 18 0.38
24 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTATAATATTATTTAAAATT
Found at i:82238635 original size:22 final size:23
Alignment explanation
Indices: 82238601--82238667 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
82238591 AAAAAATTTG
*
82238601 TAATATATATTTAAAATGTTTT-A-
1 TAATAT-TTTTTAAAAT-TTTTAAT
82238624 TAATATTTTTTAAAATTTTTAAT
1 TAATATTTTTTAAAATTTTTAAT
* *
82238647 TATTATTTTTAAAAATATTTT
1 TAATATTTTTTAAAAT-TTTT
82238668 TTTACTTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
21 4 0.11
22 10 0.26
23 20 0.53
24 4 0.11
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (23 bp):
TAATATTTTTTAAAATTTTTAAT
Found at i:82238724 original size:37 final size:35
Alignment explanation
Indices: 82238683--82238752 Score: 113
Period size: 37 Copynumber: 1.9 Consensus size: 35
82238673 TTTATATATA
*
82238683 TATTTTTGAAATTAATTATTTATAAATTTTAAAAATG
1 TATTTTTCAAATTAATT-TTT-TAAATTTTAAAAATG
82238720 TATTTTTCAAATTAATTTTTTAAATTTTAAAAA
1 TATTTTTCAAATTAATTTTTTAAATTTTAAAAA
82238753 ATAATTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 13 0.41
36 3 0.09
37 16 0.50
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (35 bp):
TATTTTTCAAATTAATTTTTTAAATTTTAAAAATG
Found at i:82238726 original size:56 final size:53
Alignment explanation
Indices: 82238620--82238726 Score: 124
Period size: 56 Copynumber: 2.0 Consensus size: 53
82238610 TTTAAAATGT
* * * *
82238620 TTTATAATATTTTTTAAAATTTTTAATTATTATTTTTAAAAATATTTTTTTAC
1 TTTATAATATTTTTTAAAATTATTAATTATAAATTTTAAAAATATATTTTTAC
* * *
82238673 TTTATATATATATTTTTGAAATTAATTATTTATAAATTTTAAAAATGTATTTTT
1 TTTATA-ATAT-TTTTTAAAATT-ATTAATTATAAATTTTAAAAATATATTTTT
82238727 CAAATTAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
53 6 0.14
54 4 0.09
55 10 0.23
56 24 0.55
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (53 bp):
TTTATAATATTTTTTAAAATTATTAATTATAAATTTTAAAAATATATTTTTAC
Found at i:82239427 original size:10 final size:9
Alignment explanation
Indices: 82239403--82239495 Score: 62
Period size: 10 Copynumber: 9.9 Consensus size: 9
82239393 TCTATGTAAA
*
82239403 ATTTAAAAA
1 ATTTAAAAT
82239412 ATTTAAAAT
1 ATTTAAAAT
82239421 CATTTAAAAT
1 -ATTTAAAAT
*
82239431 ATTAAAAAAT
1 ATT-TAAAAT
*
82239441 ATTTTAAAT
1 ATTTAAAAT
*
82239450 CATTTTAAAT
1 -ATTTAAAAT
* *
82239460 GTTTTATAAT
1 -ATTTAAAAT
*
82239470 ATTAAAAAT
1 ATTTAAAAT
*
82239479 ATATT-TAAT
1 AT-TTAAAAT
82239488 ATTTAAAA
1 ATTTAAAA
82239496 AATAATTTGA
Statistics
Matches: 65, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
8 2 0.03
9 30 0.46
10 33 0.51
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (9 bp):
ATTTAAAAT
Found at i:82239446 original size:20 final size:19
Alignment explanation
Indices: 82239404--82239511 Score: 69
Period size: 19 Copynumber: 5.5 Consensus size: 19
82239394 CTATGTAAAA
* *
82239404 TTTAAAAAATTTAAAATCA-
1 TTTAAAATATTAAAAAT-AT
82239423 TTTAAAATATTAAAAAATAT
1 TTTAAAATATT-AAAAATAT
** *
82239443 TTT-AAATCATTTTAAATGT
1 TTTAAAAT-ATTAAAAATAT
*
82239462 TTTATAATATTAAAAATAT
1 TTTAAAATATTAAAAATAT
*
82239481 ATTTAATAT-TTAAAAAATAAT
1 -TTTAAAATATT-AAAAAT-AT
*
82239502 TTGAAAATAT
1 TTTAAAATAT
82239512 ATTTTTAATA
Statistics
Matches: 68, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
19 33 0.49
20 32 0.47
21 3 0.04
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
TTTAAAATATTAAAAATAT
Found at i:82239499 original size:29 final size:29
Alignment explanation
Indices: 82239403--82239531 Score: 79
Period size: 29 Copynumber: 4.3 Consensus size: 29
82239393 TCTATGTAAA
* *
82239403 ATTTAAAAAAT-TT-AAAAT-CATTTAAA
1 ATTTAAAAAATATTAAAAATATATTTAAT
**
82239429 ATATTAAAAAATATTTTAAATCAT-TTTAA-
1 AT-TTAAAAAATATTAAAAAT-ATATTTAAT
** *
82239458 ATGTTTTATAATATTAAAAATATATTTAAT
1 AT-TTAAAAAATATTAAAAATATATTTAAT
*
82239488 ATTTAAAAAATAATTTGAAAATATATTTTTAAT
1 ATTTAAAAAAT-A-TT-AAAA-ATATATTTAAT
82239521 ATTTATAAAAA
1 ATTTA-AAAAA
82239532 AATATATTAT
Statistics
Matches: 79, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
26 2 0.03
27 9 0.11
28 4 0.05
29 30 0.38
30 8 0.10
31 2 0.03
32 4 0.05
33 15 0.19
34 5 0.06
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (29 bp):
ATTTAAAAAATATTAAAAATATATTTAAT
Found at i:82239512 original size:31 final size:34
Alignment explanation
Indices: 82239465--82239554 Score: 107
Period size: 33 Copynumber: 2.7 Consensus size: 34
82239455 TAAATGTTTT
82239465 ATAATATTAAAAATATA-TTTAATATTTA-AAAA
1 ATAATATTAAAAATATATTTTAATATTTATAAAA
*
82239497 ATAAT-TTGAAAATATATTTTTAATATTTATAAAA
1 ATAATATTAAAAATATA-TTTTAATATTTATAAAA
*
82239531 AAATATATTATAAAATAT-TTTTAA
1 ATA-ATATTA-AAAATATATTTTAA
82239555 AAAATACATT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
31 10 0.20
32 5 0.10
33 11 0.22
34 6 0.12
35 8 0.16
36 2 0.04
37 7 0.14
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (34 bp):
ATAATATTAAAAATATATTTTAATATTTATAAAA
Found at i:82239539 original size:25 final size:26
Alignment explanation
Indices: 82239505--82239558 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
82239495 AAATAATTTG
**
82239505 AAAATATATT-TTTAATATTTATAAA
1 AAAATATATTATAAAATATTTATAAA
*
82239530 AAAATATATTATAAAATATTTTTAAA
1 AAAATATATTATAAAATATTTATAAA
82239556 AAA
1 AAA
82239559 TACATTTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
AAAATATATTATAAAATATTTATAAA
Found at i:82243052 original size:30 final size:30
Alignment explanation
Indices: 82243016--82243138 Score: 158
Period size: 30 Copynumber: 4.1 Consensus size: 30
82243006 GGTCAAATGG
* *
82243016 ACTCGAACCGCCTATATCCGGGTGATATGA
1 ACTCGAACCACCTATGTCCGGGTGATATGA
* *
82243046 ACTCGAACCACCCATGTCTGGGTGATATGA
1 ACTCGAACCACCTATGTCCGGGTGATATGA
* *
82243076 ACTTGAACCATAC-ATGTCCGGGTGATATGA
1 ACTCGAACCA-CCTATGTCCGGGTGATATGA
* *
82243106 ACTCGAACCACCTATGTCCGAGTTATATGA
1 ACTCGAACCACCTATGTCCGGGTGATATGA
82243136 ACT
1 ACT
82243139 GCTCTGGGAC
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
29 1 0.01
30 78 0.98
31 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (30 bp):
ACTCGAACCACCTATGTCCGGGTGATATGA
Found at i:82248438 original size:18 final size:18
Alignment explanation
Indices: 82248403--82248445 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
82248393 TAAAAAATAT
*
82248403 ATTTAATATATATTTTTAA
1 ATTT-ATATATATATTTAA
*
82248422 ATTTATATTTATATTTAA
1 ATTTATATATATATTTAA
82248440 ATTTAT
1 ATTTAT
82248446 TAATCATCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTATATATATATTTAA
Found at i:82248743 original size:27 final size:27
Alignment explanation
Indices: 82248713--82248775 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
82248703 TTTAAAAAAA
* * *
82248713 TATTTAAAATATTATGATTTCTTATAT-
1 TATTTAAAAAATTATAATTT-TTAAATG
82248740 TA-TTAAAAAATTATAATTTTTAAATG
1 TATTTAAAAAATTATAATTTTTAAATG
82248766 TATTTAAAAA
1 TATTTAAAAA
82248776 TTGTATTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 5 0.16
26 17 0.55
27 9 0.29
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
TATTTAAAAAATTATAATTTTTAAATG
Found at i:82248999 original size:18 final size:17
Alignment explanation
Indices: 82248964--82249001 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
82248954 TAATATTTAA
82248964 TATATTTTTTTAAAATT
1 TATATTTTTTTAAAATT
82248981 TATATTTATATTT-AAATT
1 TATATTT-T-TTTAAAATT
82248999 TAT
1 TAT
82249002 TAATAGTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 9 0.47
19 3 0.16
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TATATTTTTTTAAAATT
Found at i:82249292 original size:23 final size:22
Alignment explanation
Indices: 82249261--82249355 Score: 59
Period size: 21 Copynumber: 4.2 Consensus size: 22
82249251 TAAAGTTAAA
*
82249261 AAATATTTTTAAAAATAATAATT
1 AAATTTTTTTAAAAAT-ATAATT
* *
82249284 AAATTTTTTAAAAAATATTA-T
1 AAATTTTTTTAAAAATATAATT
*** *
82249305 AAAACATTTTAAATATAT-ATT
1 AAATTTTTTTAAAAATATAATT
* *
82249326 ACAAATTTTTTAAAATTAATAATAT
1 A-AATTTTTTTAAAAAT-ATAAT-T
82249351 AAATT
1 AAATT
82249356 AAATAAGCAA
Statistics
Matches: 54, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
20 1 0.02
21 16 0.30
22 14 0.26
23 16 0.30
24 5 0.09
25 2 0.04
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AAATTTTTTTAAAAATATAATT
Found at i:82249294 original size:22 final size:22
Alignment explanation
Indices: 82249261--82249355 Score: 70
Period size: 22 Copynumber: 4.2 Consensus size: 22
82249251 TAAAGTTAAA
82249261 AAATATTTTTAAAAATAATAATT
1 AAAT-TTTTTAAAAATAATAATT
* *
82249284 AAATTTTTTAAAAA-ATATTATA
1 AAATTTTTTAAAAATA-ATAATT
** *
82249306 AAACATTTTAAATAT-AT-ATT
1 AAATTTTTTAAAAATAATAATT
*
82249326 ACAAATTTTTTAAAATTAATAATAT
1 --AAATTTTTTAAAAATAATAAT-T
82249351 AAATT
1 AAATT
82249356 AAATAAGCAA
Statistics
Matches: 55, Mismatches: 10, Indels: 14
0.70 0.13 0.18
Matches are distributed among these distances:
20 2 0.04
21 3 0.05
22 36 0.65
23 11 0.20
24 2 0.04
25 1 0.02
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AAATTTTTTAAAAATAATAATT
Found at i:82249383 original size:36 final size:37
Alignment explanation
Indices: 82249343--82249414 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 37
82249333 TTTTAAAATT
*
82249343 AATAATAT-AAA-TTAAATAAGCAAAATAAAT-TAAGAA
1 AATAATATAAAACTTAAAAAAG-AAAA-AAATCTAAGAA
82249379 AATAATATAAAACTTAAAAAAGAAAAAAATCTAAGA
1 AATAATATAAAACTTAAAAAAGAAAAAAATCTAAGA
82249415 GAGAGACAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 12 0.38
37 12 0.38
38 8 0.25
ACGTcount: A:0.68, C:0.04, G:0.06, T:0.22
Consensus pattern (37 bp):
AATAATATAAAACTTAAAAAAGAAAAAAATCTAAGAA
Found at i:82249388 original size:18 final size:18
Alignment explanation
Indices: 82249338--82249389 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
82249328 AAATTTTTTA
*
82249338 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
** *
82249356 AAATAAGCAAAATAAATT
1 AAATAAATAATATAAATT
82249374 AAGA-AAATAATATAAA
1 AA-ATAAATAATATAAA
82249390 ACTTAAAAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 25 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:82249451 original size:7 final size:8
Alignment explanation
Indices: 82249432--82249462 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
82249422 AAAATATAAG
82249432 AAAAAAGT
1 AAAAAAGT
82249440 AAAAAAGT
1 AAAAAAGT
82249448 AAAAAAAGT
1 -AAAAAAGT
82249457 AAAAAA
1 AAAAAA
82249463 TATAAGAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.10
Consensus pattern (8 bp):
AAAAAAGT
Found at i:82249452 original size:9 final size:9
Alignment explanation
Indices: 82249432--82249462 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
82249422 AAAATATAAG
82249432 AAAAAAGT-
1 AAAAAAGTA
82249440 AAAAAAGTA
1 AAAAAAGTA
82249449 AAAAAAGTA
1 AAAAAAGTA
82249458 AAAAA
1 AAAAA
82249463 TATAAGAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.10
Consensus pattern (9 bp):
AAAAAAGTA
Found at i:82252335 original size:20 final size:17
Alignment explanation
Indices: 82252289--82252343 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 17
82252279 TTTTTATAAA
82252289 TTTTATTATATGTTATAT
1 TTTTATTATATGTTAT-T
82252307 TTTTATTATATGTTATT
1 TTTTATTATATGTTATT
*
82252324 TATTCTATTTATATTTTATT
1 T-TT-TA-TTATATGTTATT
82252344 ATATATTGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
17 2 0.06
18 18 0.55
19 2 0.06
20 11 0.33
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (17 bp):
TTTTATTATATGTTATT
Found at i:82252358 original size:27 final size:29
Alignment explanation
Indices: 82252301--82252365 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
82252291 TTATTATATG
* *
82252301 TTATATTTTTATTATATGTTATTTATTCTAT
1 TTATA-TTTTATTATATATTAGTTA-TCTAT
82252332 TTATATTTTATTATATATT-GTTA-CTAT
1 TTATATTTTATTATATATTAGTTATCTAT
*
82252359 ATATATT
1 TTATATT
82252366 GATTATTCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 10 0.32
29 3 0.10
30 13 0.42
31 5 0.16
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (29 bp):
TTATATTTTATTATATATTAGTTATCTAT
Found at i:82259323 original size:23 final size:24
Alignment explanation
Indices: 82259291--82259336 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
82259281 TAACAAGCAT
*
82259291 ATTTAATTTTTATATAAA-TTTTC
1 ATTTAATTTTTACATAAAGTTTTC
*
82259314 ATTTATTTTTTACATAAAGTTTT
1 ATTTAATTTTTACATAAAGTTTT
82259337 TATACACATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (24 bp):
ATTTAATTTTTACATAAAGTTTTC
Found at i:82265191 original size:33 final size:33
Alignment explanation
Indices: 82265105--82265192 Score: 140
Period size: 33 Copynumber: 2.7 Consensus size: 33
82265095 TTCTTTCTGA
* * *
82265105 ATGGTACACATAAAGTATACATTTCCTTTTCAT
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAT
*
82265138 ATGGTATATACAAAGTATACCTTTCCTTTTCAT
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAT
82265171 ATGGTATACACAAAGTATACCT
1 ATGGTATACACAAAGTATACCT
82265193 AACATTTCCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (33 bp):
ATGGTATACACAAAGTATACCTTTCCTTTTCAT
Found at i:82265237 original size:32 final size:32
Alignment explanation
Indices: 82265178--82265254 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
82265168 CATATGGTAT
* *
82265178 ACACAAAGTATACCTAACATTTCCAAGTGTAC
1 ACACAAAGTGTACATAACATTTCCAAGTGTAC
*
82265210 ACACAAAGTGTACATAAC-CTTCTCAAGTGTAC
1 ACACAAAGTGTACATAACATTTC-CAAGTGTAC
* *
82265242 ACATATAGTGTAC
1 ACACAAAGTGTAC
82265255 TTTTCCTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 3 0.08
32 36 0.92
ACGTcount: A:0.39, C:0.23, G:0.12, T:0.26
Consensus pattern (32 bp):
ACACAAAGTGTACATAACATTTCCAAGTGTAC
Found at i:82266923 original size:22 final size:22
Alignment explanation
Indices: 82266897--82266946 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
82266887 GCATCCTATG
*
82266897 TGATAGGTATTGAAATATTCCA
1 TGATAGGAATTGAAATATTCCA
82266919 TGATAGGAATTGAAATATTCCA
1 TGATAGGAATTGAAATATTCCA
82266941 TGATAG
1 TGATAG
82266947 ATTACAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (22 bp):
TGATAGGAATTGAAATATTCCA
Found at i:82274027 original size:18 final size:20
Alignment explanation
Indices: 82273979--82274028 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
82273969 TTTTAACAAA
82273979 TAAAAACAAT-TATATAATGT
1 TAAAAA-AATATATATAATGT
82273999 TGAAAATAAATATA-ATAAT-T
1 T-AAAA-AAATATATATAATGT
82274019 TAAAAAAATA
1 TAAAAAAATA
82274029 AAAAAATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
18 5 0.19
19 4 0.15
20 3 0.11
21 12 0.44
22 3 0.11
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (20 bp):
TAAAAAAATATATATAATGT
Found at i:82278802 original size:20 final size:20
Alignment explanation
Indices: 82278765--82278803 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
82278755 TATTAAAATT
* *
82278765 AAATACTTTCGATCATTAAG
1 AAATACTTTAGATAATTAAG
*
82278785 AAATACTTTATATAATTAA
1 AAATACTTTAGATAATTAA
82278804 TAATTTCATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (20 bp):
AAATACTTTAGATAATTAAG
Found at i:82280300 original size:5 final size:5
Alignment explanation
Indices: 82280290--82280321 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
82280280 TTTTTGTGAA
82280290 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
82280322 GAACAAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:82283920 original size:19 final size:19
Alignment explanation
Indices: 82283896--82283959 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
82283886 CTGGTTGATT
82283896 TCCCTTTTGATTCGCAGCC
1 TCCCTTTTGATTCGCAGCC
* ** **
82283915 TCCCTTTT--TCTGGTTGTT
1 TCCCTTTTGAT-TCGCAGCC
82283933 TCCCTTTTGATTCGCAGCC
1 TCCCTTTTGATTCGCAGCC
82283952 TCCCTTTT
1 TCCCTTTT
82283960 AATCTTATTT
Statistics
Matches: 32, Mismatches: 10, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
17 1 0.03
18 11 0.34
19 19 0.59
20 1 0.03
ACGTcount: A:0.06, C:0.33, G:0.14, T:0.47
Consensus pattern (19 bp):
TCCCTTTTGATTCGCAGCC
Found at i:82283941 original size:37 final size:38
Alignment explanation
Indices: 82283882--82283959 Score: 149
Period size: 37 Copynumber: 2.1 Consensus size: 38
82283872 TTCACCGAAA
82283882 TTTTCTGGTTGATTTCCCTTTTGATTCGCAGCCTCCCT
1 TTTTCTGGTTGATTTCCCTTTTGATTCGCAGCCTCCCT
82283920 TTTTCTGGTTG-TTTCCCTTTTGATTCGCAGCCTCCCT
1 TTTTCTGGTTGATTTCCCTTTTGATTCGCAGCCTCCCT
82283957 TTT
1 TTT
82283960 AATCTTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 29 0.73
38 11 0.28
ACGTcount: A:0.06, C:0.28, G:0.15, T:0.50
Consensus pattern (38 bp):
TTTTCTGGTTGATTTCCCTTTTGATTCGCAGCCTCCCT
Found at i:82285755 original size:25 final size:25
Alignment explanation
Indices: 82285711--82285758 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
82285701 TAAATGAAAA
82285711 GGAAATTTCAAGAAATAAATAAAGG
1 GGAAATTTCAAGAAATAAATAAAGG
*
82285736 GGAAATTTACTAGAAA-AAATAAA
1 GGAAATTT-CAAGAAATAAATAAA
82285759 TCCATCGGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.58, C:0.04, G:0.17, T:0.21
Consensus pattern (25 bp):
GGAAATTTCAAGAAATAAATAAAGG
Found at i:82299933 original size:24 final size:23
Alignment explanation
Indices: 82299889--82299935 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
82299879 CACATTATAC
*
82299889 TTTTTCTTATATTATTTATTTTA
1 TTTTTCTTATATAATTTATTTTA
82299912 TTTTT-TTATATAAATTTAATTTTA
1 TTTTTCTTATAT-AATTT-ATTTTA
82299936 AGTATTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 9 0.43
24 6 0.29
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (23 bp):
TTTTTCTTATATAATTTATTTTA
Found at i:82300015 original size:24 final size:24
Alignment explanation
Indices: 82299988--82300034 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
82299978 TGGTATAGTA
*
82299988 TAAATACTAATATTTTTAATTATT
1 TAAATACTAATAATTTTAATTATT
** *
82300012 TAAATTTTCATAATTTTAATTAT
1 TAAATACTAATAATTTTAATTAT
82300035 AATTTAGCAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.55
Consensus pattern (24 bp):
TAAATACTAATAATTTTAATTATT
Found at i:82306902 original size:23 final size:23
Alignment explanation
Indices: 82306852--82306895 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
82306842 TTTTGTTTTG
*
82306852 TTGTTTAGCTAAATGGGCTTAGA
1 TTGTCTAGCTAAATGGGCTTAGA
82306875 TTGTCTAGCTAAATGGG-TTAG
1 TTGTCTAGCTAAATGGGCTTAG
82306896 GTCTGTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.39
Consensus pattern (23 bp):
TTGTCTAGCTAAATGGGCTTAGA
Found at i:82309907 original size:15 final size:16
Alignment explanation
Indices: 82309882--82309912 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
82309872 TAAATTCGAC
82309882 ACTTAATTTTTTTAAT
1 ACTTAATTTTTTTAAT
82309898 ACTT-ATTTTTTTAAT
1 ACTTAATTTTTTTAAT
82309913 TTATGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (16 bp):
ACTTAATTTTTTTAAT
Found at i:82310140 original size:24 final size:24
Alignment explanation
Indices: 82310113--82310168 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
82310103 ATATAAATAG
*
82310113 AAATAGTAGATTTAGAATT-TA-TAT
1 AAATA-TAAATTTAG-ATTATAGTAT
82310137 AAATATAAATTTAGATTATAGTAT
1 AAATATAAATTTAGATTATAGTAT
82310161 AAATATAA
1 AAATATAA
82310169 TAAAATAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 3 0.10
23 10 0.34
24 16 0.55
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (24 bp):
AAATATAAATTTAGATTATAGTAT
Found at i:82310167 original size:30 final size:30
Alignment explanation
Indices: 82310101--82310175 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 30
82310091 GTGTTATTGA
82310101 AAATATAAATAGAAATAGTAGATTTAGAAT
1 AAATATAAATAGAAATAGTAGATTTAGAAT
** * * *
82310131 TTATATAAATATAAAT-TTAGATTATAGTAT
1 AAATATAAATAGAAATAGTAGATT-TAGAAT
82310161 AAATAT-AATA-AAATA
1 AAATATAAATAGAAATA
82310176 ATAATATTAT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
28 4 0.11
29 10 0.28
30 22 0.61
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (30 bp):
AAATATAAATAGAAATAGTAGATTTAGAAT
Found at i:82317836 original size:43 final size:43
Alignment explanation
Indices: 82317788--82317908 Score: 140
Period size: 43 Copynumber: 2.8 Consensus size: 43
82317778 TAACGAGACA
*
82317788 TGATTATGTGTAAAACCATGTCTAGGG-CATTGGCATC-ATATTG
1 TGATTACGTGTAAAACCATGTCT-GGGACATTGGCATCAATA-TG
*
82317831 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATATG
1 TGATTACGTGTAAAACCATGTCTGGGACATTGGCATCAATATG
* * * * *
82317874 TGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 TGATTACGTGTAAAACCATGTCTGGGACATTGGCAT
82317909 TGTACGAGCT
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
42 9 0.13
43 58 0.83
44 3 0.04
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (43 bp):
TGATTACGTGTAAAACCATGTCTGGGACATTGGCATCAATATG
Found at i:82323925 original size:34 final size:35
Alignment explanation
Indices: 82323867--82323933 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
82323857 CAAACACCAG
82323867 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
82323902 AAAATATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
82323934 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:82324335 original size:21 final size:20
Alignment explanation
Indices: 82324311--82324353 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
82324301 ATATATTATT
82324311 TATAAAATT-TTATATATCAAA
1 TATAAAATTGTT-TATAT-AAA
82324332 TATAAAATTGTTTATATAAA
1 TATAAAATTGTTTATATAAA
82324352 TA
1 TA
82324354 ATTAAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.24
21 14 0.67
22 2 0.10
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
TATAAAATTGTTTATATAAA
Found at i:82324569 original size:17 final size:15
Alignment explanation
Indices: 82324540--82324583 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 15
82324530 ATAAATATAA
82324540 TAAATTTTTATAAAC
1 TAAATTTTTATAAAC
*
82324555 TAAATATTTTAATAAAAT
1 TAAAT-TTTT-AT-AAAC
82324573 TAAATTTTTAT
1 TAAATTTTTAT
82324584 TTATAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 5 0.20
16 6 0.24
17 6 0.24
18 8 0.32
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAATTTTTATAAAC
Found at i:82324711 original size:2 final size:2
Alignment explanation
Indices: 82324704--82324730 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
82324694 AATCAAAGCC
82324704 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
82324731 GTTTAAGGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.