Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 246 of 311
Found at i:82325532 original size:20 final size:19
Alignment explanation
Indices: 82325507--82325574 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 19
82325497 TTATAAAAGT
82325507 ATTATAAAAAAGTTTAGAAA
1 ATTATAAAAAA-TTTAGAAA
*
82325527 ATTATAAAAAAAATTAGAAA
1 ATTAT-AAAAAATTTAGAAA
* **
82325547 CTTAT-AAAAATGGAGAAA
1 ATTATAAAAAATTTAGAAA
82325565 ATTATAAAAA
1 ATTATAAAAA
82325575 TTATTAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
18 14 0.35
19 4 0.10
20 16 0.40
21 6 0.15
ACGTcount: A:0.63, C:0.01, G:0.09, T:0.26
Consensus pattern (19 bp):
ATTATAAAAAATTTAGAAA
Found at i:82325583 original size:18 final size:18
Alignment explanation
Indices: 82325524--82325583 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
82325514 AAAAGTTTAG
*
82325524 AAAATTATAAAAAAAATT
1 AAAATTATAAAAATAATT
* *
82325542 AGAAACTTATAAAAATGGA-G
1 A-AAA-TTATAAAAAT-AATT
*
82325562 AAAATTATAAAAATTATT
1 AAAATTATAAAAATAATT
82325580 AAAA
1 AAAA
82325584 AAAAATTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
17 1 0.03
18 15 0.45
19 6 0.18
20 10 0.30
21 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.27
Consensus pattern (18 bp):
AAAATTATAAAAATAATT
Found at i:82327444 original size:20 final size:21
Alignment explanation
Indices: 82327403--82327444 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
82327393 TTTATGCATG
*
82327403 TGTATTGGGATGAGTTTGATT
1 TGTATTGGGATGAGTATGATT
82327424 TGTATT-GGATGAAGTAT-ATT
1 TGTATTGGGATG-AGTATGATT
82327444 T
1 T
82327445 TGGCAGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.48
Consensus pattern (21 bp):
TGTATTGGGATGAGTATGATT
Found at i:82327696 original size:24 final size:24
Alignment explanation
Indices: 82327651--82327696 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
82327641 AATCTATGTT
* **
82327651 TGCATTTGTATCTGAATTTGAATA
1 TGCATCTGTATCTGAACCTGAATA
*
82327675 TGCATCTGTATTTGAACCTGAA
1 TGCATCTGTATCTGAACCTGAA
82327697 AAATACATCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.41
Consensus pattern (24 bp):
TGCATCTGTATCTGAACCTGAATA
Found at i:82328574 original size:26 final size:28
Alignment explanation
Indices: 82328510--82328575 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 28
82328500 TATATTTTAT
*
82328510 ATTTAAATATTTAAATATTTTTTTGAAG
1 ATTTAAATATTTAAATATTTATTTGAAG
* *
82328538 AGTT--ATGTTTAAATATTTATTTG-A-
1 ATTTAAATATTTAAATATTTATTTGAAG
*
82328562 CTTTAAATATTTAA
1 ATTTAAATATTTAA
82328576 GATACATAGT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
24 2 0.07
25 1 0.03
26 24 0.80
28 3 0.10
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.53
Consensus pattern (28 bp):
ATTTAAATATTTAAATATTTATTTGAAG
Found at i:82342518 original size:21 final size:21
Alignment explanation
Indices: 82342472--82342531 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
82342462 CGAATACGCC
82342472 AACAGAAGCTCG-AA-AGCTG
1 AACAGAAGCTCGTAAGAGCTG
* *
82342491 AATAGAAGCTCGTAAGAGTTG
1 AACAGAAGCTCGTAAGAGCTG
*
82342512 AACAGAAGCTTGTAAGAGCT
1 AACAGAAGCTCGTAAGAGCT
82342532 AATCCACCTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
19 11 0.32
20 2 0.06
21 21 0.62
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.18
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:82349623 original size:42 final size:42
Alignment explanation
Indices: 82349564--82349661 Score: 126
Period size: 42 Copynumber: 2.3 Consensus size: 42
82349554 AATTAATCAC
* *
82349564 ATTAATATTAAAT-TAATAAAATATTATCTAAATAAATATTGA
1 ATTAA-ATTAAATATAATAAAATAATATCTAAATAAATATTAA
* * *
82349606 ATTAAATTAAATATAATATATTAATATCTAGATAAATATTAA
1 ATTAAATTAAATATAATAAAATAATATCTAAATAAATATTAA
*
82349648 ATTCAATTAAATAT
1 ATTAAATTAAATAT
82349662 TAAATTCATT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 7 0.14
42 42 0.86
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (42 bp):
ATTAAATTAAATATAATAAAATAATATCTAAATAAATATTAA
Found at i:82349660 original size:17 final size:16
Alignment explanation
Indices: 82349638--82349674 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 16
82349628 AATATCTAGA
82349638 TAAATATTAAATTCAAT
1 TAAATATTAAATTC-AT
82349655 TAAATATTAAATTCAT
1 TAAATATTAAATTCAT
82349671 TAAA
1 TAAA
82349675 AAAATATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (16 bp):
TAAATATTAAATTCAT
Found at i:82356015 original size:15 final size:15
Alignment explanation
Indices: 82355995--82356079 Score: 55
Period size: 15 Copynumber: 5.7 Consensus size: 15
82355985 TAAAATATCC
82355995 AGAAACCCAAGATAA
1 AGAAACCCAAGATAA
* ***
82356010 AGAAACCTGAA-ACGG
1 AGAAACC-CAAGATAA
* * *
82356025 AGAAGCCTAGGATAA
1 AGAAACCCAAGATAA
*
82356040 AGAAATCCAAGATAA
1 AGAAACCCAAGATAA
* *
82356055 AGAAATCCATGATAA
1 AGAAACCCAAGATAA
*
82356070 AGAAATCCAA
1 AGAAACCCAA
82356080 TTTACAGCAC
Statistics
Matches: 52, Mismatches: 16, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
14 1 0.02
15 49 0.94
16 2 0.04
ACGTcount: A:0.54, C:0.16, G:0.18, T:0.12
Consensus pattern (15 bp):
AGAAACCCAAGATAA
Found at i:82361696 original size:46 final size:47
Alignment explanation
Indices: 82361613--82361824 Score: 183
Period size: 52 Copynumber: 4.3 Consensus size: 47
82361603 TTCCACATAG
* * *
82361613 TCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTATACGG-A
1 TCACATATCAC--ACTGAAGCCATAGCCCAGCTATGGTCTTATACGGAA
* * * * *
82361661 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTA
1 TCACATATCACACTGAAGCCATAGCCCAGCTATGGTCTTATACGGAA
* *
82361708 GCACATATCACATTTCTCCGAAGCCATAGCCCAGTTATGGTCTTATACGGAA
1 TCACATATCACA---CT--GAAGCCATAGCCCAGCTATGGTCTTATACGGAA
* *
82361760 GCACAAATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAA
1 TCACATATCACA---CT--GAAGCCATAGCCCAGCTATGGTCTTATACGG-AA
*
82361813 TCACATTTCACA
1 TCACATATCACA
82361825 TGCTGCCATG
Statistics
Matches: 140, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
46 28 0.20
47 12 0.09
48 11 0.08
50 2 0.01
52 76 0.54
53 11 0.08
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (47 bp):
TCACATATCACACTGAAGCCATAGCCCAGCTATGGTCTTATACGGAA
Found at i:82361741 original size:52 final size:51
Alignment explanation
Indices: 82361627--82361808 Score: 221
Period size: 52 Copynumber: 3.6 Consensus size: 51
82361617 ATATCACATA
* * * *
82361627 CCGAGGCCATAGCCCAGCCATGGTCTTATACGGATCACATATCACA---CT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACGAAGCACATATCACATTTCT
* * * *
82361675 --GATGCCATATCCCAGATATGGTCTTATACAGTAGCACATATCACATTTCT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATAC-GAAGCACATATCACATTTCT
* *
82361725 CCGAAGCCATAGCCCAGTTATGGTCTTATACGGAAGCACAAATCACATTTCT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATAC-GAAGCACATATCACATTTCT
82361777 CCGAAGCCATAGCCCAGCTATGGTCTTATACG
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACG
82361809 GAAATCACAT
Statistics
Matches: 115, Mismatches: 13, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
46 25 0.22
47 13 0.11
50 2 0.02
51 1 0.01
52 74 0.64
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (51 bp):
CCGAAGCCATAGCCCAGCTATGGTCTTATACGAAGCACATATCACATTTCT
Found at i:82367370 original size:15 final size:15
Alignment explanation
Indices: 82367328--82367377 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
82367318 ATAACTTTGA
*
82367328 ATGCAAATG-ATGTG
1 ATGCAAATGCATGAG
82367342 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
82367357 ATGCAAATGCATGA-
1 ATGCAAATGCATGAG
82367371 ATGCAAA
1 ATGCAAA
82367378 AAAGAATATC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.24
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:82378580 original size:22 final size:23
Alignment explanation
Indices: 82378524--82378580 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 23
82378514 TAAGTTATTT
*
82378524 TATTAGAATAATATTATATTATTAA
1 TATT-GAAT-ATATAATATTATTAA
* *
82378549 TATT-ATTATATAATATTCTT-A
1 TATTGAATATATAATATTATTAA
82378570 TATTGAATATA
1 TATTGAATATA
82378581 GATTTATGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
21 5 0.19
22 16 0.59
23 2 0.07
25 4 0.15
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (23 bp):
TATTGAATATATAATATTATTAA
Found at i:82381101 original size:15 final size:17
Alignment explanation
Indices: 82381081--82381117 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
82381071 GTCAAACATT
82381081 ATTATAAT-TATGG-TA
1 ATTATAATATATGGTTA
*
82381096 ATTATAATATTTGGTTA
1 ATTATAATATATGGTTA
82381113 ATTAT
1 ATTAT
82381118 TATGATTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 8 0.42
16 4 0.21
17 7 0.37
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
ATTATAATATATGGTTA
Found at i:82389157 original size:21 final size:22
Alignment explanation
Indices: 82389126--82389166 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
82389116 AGATGGAGAT
*
82389126 AAAAACTAAACCCTGAAAACCC
1 AAAAACTAAACCCTCAAAACCC
82389148 AAAAAC-AAACCCTCAAAAC
1 AAAAACTAAACCCTCAAAAC
82389167 GTAAATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.59, C:0.32, G:0.02, T:0.07
Consensus pattern (22 bp):
AAAAACTAAACCCTCAAAACCC
Found at i:82392356 original size:17 final size:18
Alignment explanation
Indices: 82392323--82392356 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82392313 AATTTGGAAT
*
82392323 TTTTATAAATATATTTTA
1 TTTTAAAAATATATTTTA
82392341 TTTTAAAAAT-TATTTT
1 TTTTAAAAATATATTTT
82392357 GAATTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTAAAAATATATTTTA
Found at i:82394326 original size:22 final size:21
Alignment explanation
Indices: 82394285--82394328 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
82394275 GAGTTTTTAG
*
82394285 AAATAATTAATATATGTAATA
1 AAATAATTAATATATATAATA
82394306 AAATACATTACATA-ATATAATA
1 AAATA-ATTA-ATATATATAATA
82394328 A
1 A
82394329 TTCAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 12 0.60
23 3 0.15
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (21 bp):
AAATAATTAATATATATAATA
Found at i:82394553 original size:27 final size:25
Alignment explanation
Indices: 82394514--82394566 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 25
82394504 AATAAAAATG
* *
82394514 ATATAATATAATAATTTACATATATAA
1 ATATAATAAAATAA-ATA-ATATATAA
*
82394541 ATATAGTAAAATAAATAATATATAA
1 ATATAATAAAATAAATAATATATAA
82394566 A
1 A
82394567 GTAAAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 9 0.39
26 2 0.09
27 12 0.52
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (25 bp):
ATATAATAAAATAAATAATATATAA
Found at i:82394571 original size:16 final size:16
Alignment explanation
Indices: 82394539--82394583 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
82394529 TTACATATAT
82394539 AAATATAGTAAAATAAA
1 AAATATA-TAAAATAAA
* *
82394556 TAATATATAAAGTAAA
1 AAATATATAAAATAAA
82394572 AAATATATAAAA
1 AAATATATAAAA
82394584 AATTTATAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (16 bp):
AAATATATAAAATAAA
Found at i:82397245 original size:26 final size:26
Alignment explanation
Indices: 82397207--82397264 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
82397197 CATGAAATTC
82397207 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
82397233 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
82397259 TTATCA
1 TTATCA
82397265 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:82400418 original size:21 final size:20
Alignment explanation
Indices: 82400394--82400432 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
82400384 GAGTATTTTG
82400394 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
82400415 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
82400433 ACAAGTTTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:82414608 original size:21 final size:21
Alignment explanation
Indices: 82414584--82414638 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
82414574 GGGACTACAT
*
82414584 GCCCATGTGGAGGCCACACAC
1 GCCCATATGGAGGCCACACAC
* * * *
82414605 GCCCGTATGAAGGCCCCACAT
1 GCCCATATGGAGGCCACACAC
82414626 GCCCATATGGAGG
1 GCCCATATGGAGG
82414639 GGGCATACGC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.35, G:0.29, T:0.13
Consensus pattern (21 bp):
GCCCATATGGAGGCCACACAC
Found at i:82419049 original size:2 final size:2
Alignment explanation
Indices: 82419042--82419117 Score: 152
Period size: 2 Copynumber: 38.0 Consensus size: 2
82419032 TGCATCAAGA
82419042 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82419084 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82419118 ATGGAGTTCT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 74 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:82422488 original size:23 final size:20
Alignment explanation
Indices: 82422439--82422476 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
82422429 AATATCTTAT
82422439 TAAAATAT-TAATTAAATAA
1 TAAAATATCTAATTAAATAA
*
82422458 T-AATTATCTAATTAAATAA
1 TAAAATATCTAATTAAATAA
82422477 CTATAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAATATCTAATTAAATAA
Found at i:82422743 original size:31 final size:31
Alignment explanation
Indices: 82422686--82422744 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
82422676 CACCCTTAAA
* *
82422686 ATATTTTCACTATTAGTCCTTCAATTTTTTC
1 ATATTTACACTATTAATCCTTCAATTTTTTC
*
82422717 ATATTTACACT-TTAATCCTTCAAATTTT
1 ATATTTACACTATTAATCCTTCAATTTTT
82422745 GAGCATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.27, C:0.19, G:0.02, T:0.53
Consensus pattern (31 bp):
ATATTTACACTATTAATCCTTCAATTTTTTC
Found at i:82426080 original size:16 final size:17
Alignment explanation
Indices: 82426059--82426092 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
82426049 TATATTTATA
82426059 GAATATA-TGCATATTT
1 GAATATATTGCATATTT
*
82426075 GAATATATTGCATTTTT
1 GAATATATTGCATATTT
82426092 G
1 G
82426093 CACATCTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (17 bp):
GAATATATTGCATATTT
Found at i:82426833 original size:48 final size:48
Alignment explanation
Indices: 82426751--82426844 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
82426741 TTTTTTGGCT
* *
82426751 TAAAAACACCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACACCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
*
82426799 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACACCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
82426845 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 4 0.10
48 37 0.90
ACGTcount: A:0.41, C:0.28, G:0.12, T:0.19
Consensus pattern (48 bp):
TAAAAACACCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:82429371 original size:48 final size:48
Alignment explanation
Indices: 82429289--82429382 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
82429279 TTTTTTGGCT
* *
82429289 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
82429337 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
82429383 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:82432202 original size:48 final size:48
Alignment explanation
Indices: 82432150--82432268 Score: 148
Period size: 48 Copynumber: 2.5 Consensus size: 48
82432140 GATAGGAGGC
* * * * * *
82432150 GTTGGTAGGTTCACAATAGGTGGTGATGGTGGTGGTAGAATCGATGGT
1 GTTGGTGGGTTCACAATTGGTGGTGATGGAGGTAGTAAAACCGATGGT
**
82432198 GTTGGTGGGTTCACAATTGGAAGTGATGGAGGTAGTAAAACCGATGGT
1 GTTGGTGGGTTCACAATTGGTGGTGATGGAGGTAGTAAAACCGATGGT
* *
82432246 GTTAGTGGGTTCACTATTGGTGG
1 GTTGGTGGGTTCACAATTGGTGG
82432269 ATTGGGGTAT
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.22, C:0.08, G:0.39, T:0.31
Consensus pattern (48 bp):
GTTGGTGGGTTCACAATTGGTGGTGATGGAGGTAGTAAAACCGATGGT
Found at i:82432450 original size:23 final size:23
Alignment explanation
Indices: 82432408--82432456 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
82432398 TTTTTTATAT
82432408 TTTTTATAATTTTAAAA-TTTCTA
1 TTTTTAT-ATTTTAAAATTTTCTA
82432431 TTTTTAT-TTTTAAATGATTTTCTA
1 TTTTTATATTTTAAA--ATTTTCTA
82432455 TT
1 TT
82432457 ATTTTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
21 7 0.30
23 8 0.35
24 8 0.35
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTTTATATTTTAAAATTTTCTA
Found at i:82440547 original size:21 final size:20
Alignment explanation
Indices: 82440518--82440557 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
82440508 ACAAAACTTG
82440518 TATAACTATCATCAAACATT
1 TATAACTATCATCAAACATT
*
82440538 TATAATCTATCATTAAACAT
1 TATAA-CTATCATCAAACAT
82440558 CAAAATACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (20 bp):
TATAACTATCATCAAACATT
Found at i:82446595 original size:42 final size:42
Alignment explanation
Indices: 82446549--82446629 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
82446539 GTTAATGTAT
* * * *
82446549 ATATATAGCCGAAGTTATCTCGATCTCGCATACTAAGTGCAA
1 ATATATAACCAAAGCTATCTCGATCTCGCACACTAAGTGCAA
* *
82446591 ATATATAACCAAAGCTATCTCGATTTCTCACACTAAGTG
1 ATATATAACCAAAGCTATCTCGATCTCGCACACTAAGTG
82446630 TCCATAATTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (42 bp):
ATATATAACCAAAGCTATCTCGATCTCGCACACTAAGTGCAA
Found at i:82464141 original size:24 final size:24
Alignment explanation
Indices: 82464113--82464161 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
82464103 AATACCAAAG
82464113 AAATTTCTTTGATATAAGAAGAGA
1 AAATTTCTTTGATATAAGAAGAGA
82464137 AAATTTCTTTGATATAAGAAGAGA
1 AAATTTCTTTGATATAAGAAGAGA
82464161 A
1 A
82464162 TTACACGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.04, G:0.16, T:0.33
Consensus pattern (24 bp):
AAATTTCTTTGATATAAGAAGAGA
Found at i:82464388 original size:19 final size:19
Alignment explanation
Indices: 82464364--82464402 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
82464354 TACCACTAAA
82464364 CCAACAAGCTCATTCTTAT
1 CCAACAAGCTCATTCTTAT
82464383 CCAACAAGCTCATTCTTAT
1 CCAACAAGCTCATTCTTAT
82464402 C
1 C
82464403 ATTAGTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.33, G:0.05, T:0.31
Consensus pattern (19 bp):
CCAACAAGCTCATTCTTAT
Found at i:82466255 original size:38 final size:38
Alignment explanation
Indices: 82466200--82466273 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
82466190 AATATAAAAA
* *
82466200 TTATATTTAATACAATAAAATATTTATTATTTTTATTT
1 TTATATTTAATACAATAAAACATTTATTATATTTATTT
* *
82466238 TTATTTTTAATATAATAAAACATTTATTATATTTAT
1 TTATATTTAATACAATAAAACATTTATTATATTTAT
82466274 GATAGTGTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (38 bp):
TTATATTTAATACAATAAAACATTTATTATATTTATTT
Found at i:82471084 original size:19 final size:19
Alignment explanation
Indices: 82471060--82471098 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
82471050 ACCTTATATA
82471060 TACTAA-CTTCTCTAATAAT
1 TACTAAGCTTCT-TAATAAT
82471079 TACTAAGCTTCTTAATAAT
1 TACTAAGCTTCTTAATAAT
82471098 T
1 T
82471099 CTCCTTCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.44
Consensus pattern (19 bp):
TACTAAGCTTCTTAATAAT
Found at i:82471731 original size:2 final size:2
Alignment explanation
Indices: 82471724--82471749 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
82471714 GCTAACGAAC
82471724 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
82471750 CCATTCTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82473481 original size:30 final size:30
Alignment explanation
Indices: 82473445--82473520 Score: 134
Period size: 30 Copynumber: 2.5 Consensus size: 30
82473435 AATGTTTTGT
82473445 TCACACAAGCTGACATTTTAATGGAATTGC
1 TCACACAAGCTGACATTTTAATGGAATTGC
* *
82473475 TCACACAAGTTGACATTTTAGTGGAATTGC
1 TCACACAAGCTGACATTTTAATGGAATTGC
82473505 TCACACAAGCTGACAT
1 TCACACAAGCTGACAT
82473521 CGTGTCGAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (30 bp):
TCACACAAGCTGACATTTTAATGGAATTGC
Found at i:82475604 original size:46 final size:46
Alignment explanation
Indices: 82475551--82475726 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 46
82475541 TATTTGGGCA
*
82475551 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
82475597 TCCGAACTCGTTGAGTTAAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * * *
82475644 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
82475690 CCCGAGCTCGTTAAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82475727 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
46 68 0.67
47 34 0.33
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:82475717 original size:93 final size:93
Alignment explanation
Indices: 82475547--82475719 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
82475537 GGGATATTTG
* *** *
82475547 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTAAG
82475612 TTAAGTCCGAGTTCGAGAGATGTAACTA
66 TTAAGTCCGAGTTCGAGAGATGTAACTA
* * *
82475640 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACACCCGAGCTCGTTAAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTAAG
* *
82475705 TTGAGTCTGAGTTCG
66 TTAAGTCCGAGTTCG
82475720 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTAAG
TTAAGTCCGAGTTCGAGAGATGTAACTA
Found at i:82484212 original size:9 final size:9
Alignment explanation
Indices: 82484198--82484224 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
82484188 AAGTTTAGAG
82484198 AAAATAAAA
1 AAAATAAAA
82484207 AAAATAAAA
1 AAAATAAAA
82484216 AAAATAAAA
1 AAAATAAAA
82484225 GGTAAACTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAATAAAA
Found at i:82484805 original size:16 final size:16
Alignment explanation
Indices: 82484784--82484815 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
82484774 CAATCTTGTG
82484784 GGCAGTATACACAAAT
1 GGCAGTATACACAAAT
82484800 GGCAGTATACACAAAT
1 GGCAGTATACACAAAT
82484816 TTTGTGTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (16 bp):
GGCAGTATACACAAAT
Found at i:82486418 original size:22 final size:21
Alignment explanation
Indices: 82486380--82486424 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
82486370 ATAATACTGA
82486380 TTTTTTTATTATGATTTTAAT
1 TTTTTTTATTATGATTTTAAT
*
82486401 TTTTTTATATCTAT-ATTTTTAT
1 TTTTTT-TAT-TATGATTTTAAT
82486423 TT
1 TT
82486425 AAATGCGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 12 0.57
23 3 0.14
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTTTTTATTATGATTTTAAT
Found at i:82490800 original size:6 final size:6
Alignment explanation
Indices: 82490784--82490832 Score: 68
Period size: 6 Copynumber: 8.7 Consensus size: 6
82490774 CTTTTTCGGA
*
82490784 ATTTAA ATTT-T ATTT-T -TTTAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
82490829 ATTT
1 ATTT
82490833 TTATGAGTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
4 3 0.08
5 6 0.15
6 31 0.77
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
ATTTAT
Found at i:82491553 original size:17 final size:17
Alignment explanation
Indices: 82491522--82491556 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
82491512 GTGAATGAAA
**
82491522 AATTTTATATTAAAATT
1 AATTTTATAAAAAAATT
82491539 AATTTTATAAAAAAATT
1 AATTTTATAAAAAAATT
82491556 A
1 A
82491557 TTTATAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTTATAAAAAAATT
Found at i:82503796 original size:41 final size:41
Alignment explanation
Indices: 82503734--82503895 Score: 152
Period size: 41 Copynumber: 3.9 Consensus size: 41
82503724 GGGTCTAAAT
*
82503734 CCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAACTTAGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * *
82503775 CCGAACTTAGTTTAGAAGGGCTTTTTAGAGCCAATG-TCATAA
1 CCGAACTTAGTCTCGAAGGGC-TTTT-GAGCCAGTGCTAATAA
* * *
82503817 CCGGACTTAGT-TCCGAAGGGCCTTCGAGCCAGTAGTCTAAT--
1 CCGAACTTAGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
* * *
82503858 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGTGCTAA
1 CCGAACTTAGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
82503896 GAGTCGGACT
Statistics
Matches: 97, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
39 4 0.04
40 8 0.08
41 47 0.48
42 27 0.28
43 11 0.11
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
CCGAACTTAGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:82508195 original size:284 final size:284
Alignment explanation
Indices: 82507685--82508253 Score: 996
Period size: 284 Copynumber: 2.0 Consensus size: 284
82507675 GACCCGAACA
* * *
82507685 AATTTCGTATTCATGTAGTATCTGTTTCAAACAAGTGGTATTTTTTTACGTTGCTGTCCCAAATA
1 AATTTCGTATTCATGTAGTATCTATTTCAAACAAGTGGCATTTTTTTACGTTACTGTCCCAAATA
82507750 AAATGCAATCATCTGCAAAAAGTATGCTAGAAATCTGAGGGACCCTTCTGCTTACCTTAACTCTT
66 AAATGCAATCATCTGCAAAAAGTATGCTAGAAATCTGAGGGACCCTTCTGCTTACCTTAACTCTT
82507815 CTCATTAATTTTTCATGTATCCCTAACTTCATAAGGCTAGAAAGACCTTCTCCACAAAATAAGAA
131 CTCATTAATTTTTCATGTATCCCTAACTTCATAAGGCTAGAAAGACCTTCTCCACAAAATAAGAA
* *
82507880 TAAGAGTAGACTCAACGAGTCACCCTGTCTTAATCCCCTTGAAAGGAAAAAAGTATCCGCTTTAT
196 TAAGAATAGACTCAACGAGTCACCCTGTCTTAATCCCCTTGAAAGGAAAAAAGTATCCCCTTTAT
82507945 TCCCATTTAAGACCAACGAATAAG
261 TCCCATTTAAGACCAACGAATAAG
*
82507969 AATTTCGTATTCATGTAGTATCTATTTCAAACAAGTGGCATTTTTTTCCGTTACTGTCCCAAATA
1 AATTTCGTATTCATGTAGTATCTATTTCAAACAAGTGGCATTTTTTTACGTTACTGTCCCAAATA
* *
82508034 AAATGCAATCATCTGCAAAAAGTATGCTAGAAATCTGAGGG-CCCATTCTGCTTGCCTTAGCTCT
66 AAATGCAATCATCTGCAAAAAGTATGCTAGAAATCTGAGGGACCC-TTCTGCTTACCTTAACTCT
* *
82508098 TCTTATTAATTTTTCATGTATCCCTAACTTCATAAGGTTAGAAAGACCTTCTCCACAAAATAAGA
130 TCTCATTAATTTTTCATGTATCCCTAACTTCATAAGGCTAGAAAGACCTTCTCCACAAAATAAGA
* * * *
82508163 ATAAGAATAGACTCAACGGGTCACCCTGTCTTAATCCCTTTGCAGGGAAAAAAGTATCCCCTTTA
195 ATAAGAATAGACTCAACGAGTCACCCTGTCTTAATCCCCTTGAAAGGAAAAAAGTATCCCCTTTA
82508228 TTCCCATTTAAGACCAACGAATAAG
260 TTCCCATTTAAGACCAACGAATAAG
82508253 A
1 A
82508254 TACTATAGTA
Statistics
Matches: 270, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
283 3 0.01
284 267 0.99
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.32
Consensus pattern (284 bp):
AATTTCGTATTCATGTAGTATCTATTTCAAACAAGTGGCATTTTTTTACGTTACTGTCCCAAATA
AAATGCAATCATCTGCAAAAAGTATGCTAGAAATCTGAGGGACCCTTCTGCTTACCTTAACTCTT
CTCATTAATTTTTCATGTATCCCTAACTTCATAAGGCTAGAAAGACCTTCTCCACAAAATAAGAA
TAAGAATAGACTCAACGAGTCACCCTGTCTTAATCCCCTTGAAAGGAAAAAAGTATCCCCTTTAT
TCCCATTTAAGACCAACGAATAAG
Found at i:82511433 original size:18 final size:18
Alignment explanation
Indices: 82511391--82511478 Score: 65
Period size: 18 Copynumber: 4.9 Consensus size: 18
82511381 TTTTTAATTA
*
82511391 ATAAAATATTTTTAAAATAT
1 ATAAAAT-TTTATAAAA-AT
*
82511411 TTAAAATTTTATAAAAAT
1 ATAAAATTTTATAAAAAT
**
82511429 ATAAAAACTTATAAATAAT
1 ATAAAATTTTATAAA-AAT
* *
82511448 AT-AAATTTCAAAAAAAT
1 ATAAAATTTTATAAAAAT
*
82511465 -TAAAA-ATTATAAAA
1 ATAAAATTTTATAAAA
82511479 GGAAAGTCAT
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
16 7 0.13
17 6 0.11
18 22 0.41
19 13 0.24
20 6 0.11
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAAAATTTTATAAAAAT
Found at i:82511956 original size:21 final size:21
Alignment explanation
Indices: 82511928--82511970 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
82511918 ACTTGTTTTG
82511928 ATTTTTTTATGAGTCTTTATAA
1 ATTTTTTTATGAGT-TTTATAA
*
82511950 ATTTTTTTATTAGTTTTATAA
1 ATTTTTTTATGAGTTTTATAA
82511971 TTATGGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (21 bp):
ATTTTTTTATGAGTTTTATAA
Found at i:82512104 original size:9 final size:9
Alignment explanation
Indices: 82512092--82512169 Score: 75
Period size: 9 Copynumber: 8.1 Consensus size: 9
82512082 AATACATTTT
82512092 ATTTTTATA
1 ATTTTTATA
*
82512101 ATTTATTAGA
1 ATTT-TTATA
82512111 ATTTTTATA
1 ATTTTTATA
82512120 ATTTTTTATA
1 A-TTTTTATA
* *
82512130 CTATTTATA
1 ATTTTTATA
82512139 AGTTTTTATGA
1 A-TTTTTAT-A
82512150 ATTTTTTATA
1 A-TTTTTATA
*
82512160 ACTTTTATA
1 ATTTTTATA
82512169 A
1 A
82512170 GTTTATGTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
9 24 0.42
10 24 0.42
11 9 0.16
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (9 bp):
ATTTTTATA
Found at i:82512135 original size:12 final size:10
Alignment explanation
Indices: 82512093--82512169 Score: 70
Period size: 10 Copynumber: 7.9 Consensus size: 10
82512083 ATACATTTTA
82512093 TTTTTATAAT
1 TTTTTATAAT
* *
82512103 TTATTAGAA-
1 TTTTTATAAT
82512112 TTTTTATAAT
1 TTTTTATAAT
*
82512122 TTTTTAT-AC
1 TTTTTATAAT
* *
82512131 TATTTATAAG
1 TTTTTATAAT
82512141 TTTTTATGAAT
1 TTTTTAT-AAT
82512152 TTTTTATAA-
1 TTTTTATAAT
*
82512161 CTTTTATAA
1 TTTTTATAA
82512170 GTTTATGTTA
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
9 22 0.41
10 23 0.43
11 9 0.17
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:82512155 original size:30 final size:29
Alignment explanation
Indices: 82512093--82512173 Score: 103
Period size: 30 Copynumber: 2.8 Consensus size: 29
82512083 ATACATTTTA
* *
82512093 TTTTTATAATTTATTAGAA-TTTTTATAAT
1 TTTTTATAACTT-TTATAAGTTTTTATAAT
82512122 TTTTTAT-ACTATTTATAAGTTTTTATGAAT
1 TTTTTATAACT-TTTATAAGTTTTTAT-AAT
82512152 TTTTTATAACTTTTATAAGTTT
1 TTTTTATAACTTTTATAAGTTT
82512174 ATGTTAAATT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
28 7 0.15
29 15 0.33
30 21 0.46
31 3 0.07
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (29 bp):
TTTTTATAACTTTTATAAGTTTTTATAAT
Found at i:82512157 original size:21 final size:19
Alignment explanation
Indices: 82512092--82512167 Score: 75
Period size: 19 Copynumber: 3.9 Consensus size: 19
82512082 AATACATTTT
82512092 ATTTTTATAATTTATTA-GA
1 ATTTTTATAATTT-TTATGA
82512111 ATTTTTATAATTTTTTAT-A
1 ATTTTTATAA-TTTTTATGA
* *
82512130 CTATTTATAAGTTTTTATGA
1 ATTTTTATAA-TTTTTATGA
*
82512150 ATTTTTTATAACTTTTAT
1 A-TTTTTATAATTTTTAT
82512168 AAGTTTATGT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
19 29 0.62
20 10 0.21
21 8 0.17
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.62
Consensus pattern (19 bp):
ATTTTTATAATTTTTATGA
Found at i:82526983 original size:6 final size:6
Alignment explanation
Indices: 82526972--82527010 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
82526962 GTCCTTGCAC
* *
82526972 GTGAGG GTGAGG GTGAGG ATGAGG GTGAGG GTGAAG GTG
1 GTGAGG GTGAGG GTGAGG GTGAGG GTGAGG GTGAGG GTG
82527011 GTGGAAGGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.21, C:0.00, G:0.62, T:0.18
Consensus pattern (6 bp):
GTGAGG
Found at i:82548220 original size:22 final size:22
Alignment explanation
Indices: 82548195--82548236 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
82548185 TAGTCTTATA
82548195 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
82548217 ATAATTTATTATTTTAATAA
1 ATAAATTATTAATATAATAA
82548237 TTTTTTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:82548298 original size:16 final size:17
Alignment explanation
Indices: 82548262--82548298 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
82548252 AATTTTATTT
*
82548262 TAATAATAAATTTTATA
1 TAATAATAAATTTTAAA
82548279 -AATAAT-AATTTTAAA
1 TAATAATAAATTTTAAA
82548294 TAATA
1 TAATA
82548299 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAATAAATTTTAAA
Found at i:82548351 original size:15 final size:15
Alignment explanation
Indices: 82548331--82548387 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
82548321 ATTCAATATT
82548331 AATATTTTAATAATA
1 AATATTTTAATAATA
*
82548346 AATATTTATGACAATTATA
1 AATATTT-T---AATAATA
*
82548365 AATATATTAATAATA
1 AATATTTTAATAATA
*
82548380 AATGTTTT
1 AATATTTT
82548388 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 19 0.58
16 1 0.03
18 1 0.03
19 12 0.36
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:82549658 original size:19 final size:19
Alignment explanation
Indices: 82549636--82549672 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
82549626 TCGTGGAATA
82549636 ATTACTTA-ATACATGAAAC
1 ATTACTTATA-ACATGAAAC
82549655 ATTACTTATAACATGAAA
1 ATTACTTATAACATGAAA
82549673 ATTTTTCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.14, G:0.05, T:0.32
Consensus pattern (19 bp):
ATTACTTATAACATGAAAC
Found at i:82556447 original size:20 final size:20
Alignment explanation
Indices: 82556422--82556459 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
82556412 CGTGGAATGA
* *
82556422 ATGTCTTTGGTGGGACAACG
1 ATGTCTATGATGGGACAACG
82556442 ATGTCTATGATGGGACAA
1 ATGTCTATGATGGGACAA
82556460 ACCTTGCCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.29
Consensus pattern (20 bp):
ATGTCTATGATGGGACAACG
Found at i:82577084 original size:46 final size:46
Alignment explanation
Indices: 82577034--82577159 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
82577024 TTGAGCATCT
* **
82577034 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
82577080 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
*
82577126 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82577160 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
Found at i:82579567 original size:13 final size:13
Alignment explanation
Indices: 82579549--82579574 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82579539 GGTTTTCTCC
82579549 AAAATGAAAATGA
1 AAAATGAAAATGA
82579562 AAAATGAAAATGA
1 AAAATGAAAATGA
82579575 CTTGAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:82579772 original size:28 final size:27
Alignment explanation
Indices: 82579719--82579774 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
82579709 GATTTTGACG
* *
82579719 TAATTAGAATCTGTTGAGAAAATTATT
1 TAATTAGAATATATTGAGAAAATTATT
* *
82579746 TAATTAGAAATATATTGAGATATTTATT
1 TAATTAG-AATATATTGAGAAAATTATT
82579774 T
1 T
82579775 TGGGAAATAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (27 bp):
TAATTAGAATATATTGAGAAAATTATT
Found at i:82581118 original size:13 final size:13
Alignment explanation
Indices: 82581100--82581127 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82581090 TTTTAGACCT
82581100 TGGTTACCATATG
1 TGGTTACCATATG
82581113 TGGTTACCATATG
1 TGGTTACCATATG
82581126 TG
1 TG
82581128 AATATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.25, T:0.39
Consensus pattern (13 bp):
TGGTTACCATATG
Found at i:82584346 original size:48 final size:48
Alignment explanation
Indices: 82584196--82584768 Score: 562
Period size: 48 Copynumber: 12.0 Consensus size: 48
82584186 GACAATTAGG
*
82584196 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-T
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
** * * * *
82584243 ACATTATGAGAGCAAGTGTAAGACCATGACT-GGACATGGCATCGGCGT
1 TGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * * * *
82584291 TGATATGTGTGCCAGTGTAGGACCATGTCTGGAATATTGCATCGGCGT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * *
82584339 TGATATGTGTGCTAGTGTAAGACCATGTATGGGACATGGCATCTGTGT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * *
82584387 TGATATGTGTGCCAGTGTAAGACCATGTATTGGACATGGCATCGGCGT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
*
82584435 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-C
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
** * * * * *
82584482 ACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCAGCGT
1 TGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * *
82584531 TGATACGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-C
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
** * ** * * *
82584578 ACATTATGAGAACCAGTGTAAAACCATGTCTGGGACATGGCATCGGCAT
1 TGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * * * * * * ** *
82584627 TGAGACGAGAGCTAGTGTAAAACCATGTCTGGGATATGACATCAACAT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * * *
82584675 TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-T
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * * * * *
82584722 TCAACATGTGAGCCAGGGTAAGACCATGTCTGGGACATGGAATCGGC
1 T-GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
82584769 AATTTACCCT
Statistics
Matches: 435, Mismatches: 83, Indels: 15
0.82 0.16 0.03
Matches are distributed among these distances:
47 41 0.09
48 392 0.90
49 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
Found at i:82588735 original size:28 final size:30
Alignment explanation
Indices: 82588704--82588760 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
82588694 CATACTTTAA
82588704 ATATAT-AGTTTTT-TAAAAATAAAATAAT
1 ATATATGAGTTTTTATAAAAATAAAATAAT
* * *
82588732 ATATTTGAGTTTTTATTAAAATAATATAA
1 ATATATGAGTTTTTATAAAAATAAAATAA
82588761 AAATGATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.21
29 7 0.29
30 12 0.50
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (30 bp):
ATATATGAGTTTTTATAAAAATAAAATAAT
Found at i:82589687 original size:29 final size:30
Alignment explanation
Indices: 82589623--82589688 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 30
82589613 AGTGAAACAG
* *
82589623 TAGTAAAATAGTGAAAAACAACAAAATAGA
1 TAGTAAAACAGTAAAAAACAACAAAATAGA
*
82589653 -AATAAAACAGTAAAAAACAACAAGAA-A-A
1 TAGTAAAACAGTAAAAAACAACAA-AATAGA
82589681 TAGTAAAA
1 TAGTAAAA
82589689 AAAAGTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
28 1 0.03
29 27 0.90
30 2 0.07
ACGTcount: A:0.68, C:0.08, G:0.11, T:0.14
Consensus pattern (30 bp):
TAGTAAAACAGTAAAAAACAACAAAATAGA
Found at i:82590971 original size:20 final size:19
Alignment explanation
Indices: 82590943--82591005 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
82590933 ATTACAAAAA
*
82590943 AAAAAAATTTTCAAATATTC
1 AAAATAATTTTCAAA-ATTC
*
82590963 AAAATAATTTTTAAAATTC
1 AAAATAATTTTCAAAATTC
*
82590982 AAAAT-ATTTATAAAAATTC
1 AAAATAATTT-TCAAAATTC
*
82591001 TAAAT
1 AAAAT
82591006 TTTATATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
18 4 0.11
19 21 0.55
20 13 0.34
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATAATTTTCAAAATTC
Found at i:82590981 original size:19 final size:19
Alignment explanation
Indices: 82590943--82590996 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
82590933 ATTACAAAAA
* *
82590943 AAAAAAATTTTCAAATATTC
1 AAAATAATTTTTAAA-ATTC
82590963 AAAATAATTTTTAAAATTC
1 AAAATAATTTTTAAAATTC
*
82590982 AAAAT-ATTTATAAAA
1 AAAATAATTTTTAAAA
82590997 ATTCTAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
18 9 0.29
19 9 0.29
20 13 0.42
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATAATTTTTAAAATTC
Found at i:82590997 original size:19 final size:19
Alignment explanation
Indices: 82590959--82591011 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
82590949 ATTTTCAAAT
*
82590959 ATTCAAAATAATTT-TTAAA
1 ATTCAAAAT-ATTTATAAAA
82590978 ATTCAAAATATTTATAAAA
1 ATTCAAAATATTTATAAAA
*
82590997 ATTCTAAAT-TTTATA
1 ATTCAAAATATTTATA
82591012 TTTTTAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
18 10 0.32
19 21 0.68
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (19 bp):
ATTCAAAATATTTATAAAA
Found at i:82591007 original size:35 final size:34
Alignment explanation
Indices: 82590971--82591038 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 34
82590961 TCAAAATAAT
82590971 TTTTA-AAATTCAAAATATTTATAAAAATTCTAAA
1 TTTTATAAATTCAAAATATTTATAAAAA-TCTAAA
** * *
82591005 TTTTATATTTTTAAAATTTTTATAAAAATCTAAA
1 TTTTATAAATTCAAAATATTTATAAAAATCTAAA
82591039 GAATATATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 11 0.38
35 18 0.62
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (34 bp):
TTTTATAAATTCAAAATATTTATAAAAATCTAAA
Found at i:82595284 original size:131 final size:131
Alignment explanation
Indices: 82595091--82595741 Score: 641
Period size: 131 Copynumber: 5.0 Consensus size: 131
82595081 AGTTTCACAA
* * * * *
82595091 TTATTAAGAATTCTTTAAAACGAAGGCGATTTTCGAT-TCTTGGCAATTCGTGGAATCGTGCCCT
1 TTATTAAAAATCCTTTAAAACGAAGACAATATTCGATGT-TTGGCAATTCG-GGAATCGTGCCCT
* * *** ** *
82595155 AACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTGATCGAAGGTCCCTTTAGAATTTCACCCA
64 ATCGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTTAGAATTTCACTCA
82595220 TGT
129 TGT
* * * *
82595223 CTT-TTAAAAATCCCTT-AAACGAAGACAATATACGATATTTGGTAATTCGCGGAATCGTGCCCT
1 -TTATTAAAAATCCTTTAAAACGAAGACAATATTCGATGTTTGGCAATTCG-GGAATCGTGCCCT
* * * * * * * *
82595286 AACGTGCTGGGTTGCAATTTCCCATTTGCTTAAAATAATCAAATATCCCTTCAAAATTTCACTCA
64 ATCGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTTAGAATTTCACTCA
82595351 TGT
129 TGT
* ** * * * * *
82595354 CTT-CTAAAAATCCTTTAAAACGAAGGTAATATTCGGTTTTTGACAATTCGAGAATCATGCCCTA
1 -TTATTAAAAATCCTTTAAAACGAAGACAATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTA
** * * *
82595418 TCGTGCTGGGTTGTGATTTCTCGTTTGCTTAAAACAATCGAATATTCCTTTAGATTTTCACTCAT
65 TCGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTTAGAATTTCACTCAT
82595483 GT
130 GT
* * * *
82595485 TTATT-AAAATCCTTTAAAATGAAGACAATATTCGGTGTTTGACAATTCGGGAATCATGCCCTAT
1 TTATTAAAAATCCTTTAAAACGAAGACAATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
** * *
82595549 CGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGATTTTCACTCATG
66 CGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTTAGAATTTCACTCATG
82595614 T
131 T
* * * ** * *
82595615 TTATTAAAAAT-CTTTCAAAACGAAGGCGATGTTCGATGTTTGGTGATTTGAGAATCGTGCCCTA
1 TTATTAAAAATCCTTT-AAAACGAAGACAATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTA
** * * * * **
82595679 TCGTGCTGGGTTGCGCTTTTTCATTTG-TCCAAAATAATCGAAGATCCCTTCGGAATTTCACTC
65 TCGTGCTGGGTTGCAATTTCTCGTTTGCT-CAAAACAATCGAATATCCCTTTAGAATTTCACTC
82595742 GTATTTTCTA
Statistics
Matches: 441, Mismatches: 71, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
130 131 0.30
131 271 0.61
132 37 0.08
133 2 0.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (131 bp):
TTATTAAAAATCCTTTAAAACGAAGACAATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
CGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTTAGAATTTCACTCATG
T
Found at i:82595740 original size:261 final size:261
Alignment explanation
Indices: 82595091--82595741 Score: 704
Period size: 261 Copynumber: 2.5 Consensus size: 261
82595081 AGTTTCACAA
* *
82595091 TTATTAAGAATTCTTTAAAACGAAGGCGATTTTCGATTCTTGGCAATTCGTG-GAATCGTGCCCT
1 TTATTAA-AAATCTTTAAAACGAAGGCGATATTCGATT-TTGGCAATT--TGAGAATCGTGCCCT
* * * * * * *
82595155 AACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTGATCGAAGGTCCCTTTAGAATTTCACCCA
62 ATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAATAATCGAAGATCCCTTTAGAATTTCACTCA
** *
82595220 TGTCTTTTAAAAATCCCTTAAACGAAGACAATATACGATATTTGGTAATTCGCGGAATCGTGCCC
127 TGTCTTTTAAAAATCCCTTAAACGAAGACAATATACGATATTTGACAATTCGCGGAATCATGCCC
* *
82595285 TAACGTGCTGGGTTGCAATTTCCCATTTGCTTAAAATAATCAAATATCCCTTCAAAATTTCACTC
192 TAACGTGCTGGGTTGCAATTTCCCATTTGCTCAAAACAATCAAATATCCCTTCAAAATTTCACTC
82595350 ATGTC
257 ATGTC
* ** * * * *
82595355 TT-CTAAAAATCCTTTAAAACGAAGGTAATATTCGGTTTTTGACAATTCGAGAATCATGCCCTAT
1 TTATTAAAAAT-CTTTAAAACGAAGGCGATATTC-GATTTTGGCAATTTGAGAATCGTGCCCTAT
* * * * * *
82595419 CGTGCTGGGTTGTGATTTCTCGTTTGCTTAAAACAATCGAATATTCCTTTAGATTTTCACTCATG
64 CGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAATAATCGAAGATCCCTTTAGAATTTCACTCATG
* * * * *
82595484 T-TTATT-AAAATCCTTTAAAATGAAGACAATATTCGGTGTTTGACAATTCG-GGAATCATGCCC
129 TCTT-TTAAAAATCCCTT-AAACGAAGACAATATACGATATTTGACAATTCGCGGAATCATGCCC
* ** * * * * * * *
82595546 TATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGATTTTCACTC
192 TAACGTGCTGGGTTGCAATTTCCCATTTGCTCAAAACAATCAAATATCCCTTCAAAATTTCACTC
82595611 ATGT-
257 ATGTC
* **
82595615 TTATTAAAAATCTTTCAAAACGAAGGCGATGTTCGATGTTTGGTGATTTGAGAATCGTGCCCTAT
1 TTATTAAAAATCTTT-AAAACGAAGGCGATATTCGAT-TTTGGCAATTTGAGAATCGTGCCCTAT
* * * **
82595680 CGTGCTGGGTTGCGCTTTTTCATTTG-TCCAAAATAATCGAAGATCCCTTCGGAATTTCACTC
64 CGTGCTGGGTTGCGATTTCTCGTTTGCT-CAAAATAATCGAAGATCCCTTTAGAATTTCACTC
82595742 GTATTTTCTA
Statistics
Matches: 315, Mismatches: 63, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
260 9 0.03
261 173 0.55
262 98 0.31
263 30 0.10
264 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (261 bp):
TTATTAAAAATCTTTAAAACGAAGGCGATATTCGATTTTGGCAATTTGAGAATCGTGCCCTATCG
TGCTGGGTTGCGATTTCTCGTTTGCTCAAAATAATCGAAGATCCCTTTAGAATTTCACTCATGTC
TTTTAAAAATCCCTTAAACGAAGACAATATACGATATTTGACAATTCGCGGAATCATGCCCTAAC
GTGCTGGGTTGCAATTTCCCATTTGCTCAAAACAATCAAATATCCCTTCAAAATTTCACTCATGT
C
Found at i:82597295 original size:23 final size:21
Alignment explanation
Indices: 82597256--82597305 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 21
82597246 TATATTAAAC
*
82597256 TATTTTTTAATTCATGTATAT
1 TATTTTTTAATTAATGTATAT
82597277 TATTTATTTAAATTAATGTATAT
1 TATTT-TTT-AATTAATGTATAT
82597300 TATTTT
1 TATTTT
82597306 GTATATTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 5 0.19
22 4 0.15
23 17 0.65
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (21 bp):
TATTTTTTAATTAATGTATAT
Found at i:82604422 original size:131 final size:126
Alignment explanation
Indices: 82604274--82604574 Score: 302
Period size: 131 Copynumber: 2.3 Consensus size: 126
82604264 TTAGAAAGCG
** * * * * *
82604274 TGAGTGAAATTCCGAAGGAATCTTCGATTGTTTTGAACAAATGAAAAAGCGCAATCCAGCACAAT
1 TGAGTGAAATTTTGAAGG-ATATTCGATTATTTTGAACAAACGAAAAAGCGCAACCCAACACAAT
* * *
82604339 AGGGCACGATTCTCA-AATCACCAAACATCGAATATCGCCTTCGTTTTGAAGGGTTTTTAATAA-
65 AGGGCACGATTC-CACAATCACCAAACATC-AA-ATCACATTCG-TTT-AAGGGATTTTAA-AAG
82604402 ACA
124 ACA
* * ** **
82604405 TGAGTGAAATTTTGAAGGGATATTTGATTATTTT-AAGCAAACGAGAAATTGCAACCCAACACGT
1 TGAGTGAAATTTTGAA-GGATATTCGATTATTTTGAA-CAAACGAAAAAGCGCAACCCAACACAA
** *
82604469 TAGGGCACGATTCCACGAATTGCCAAATATCAAATCACATTCGTTTAAGGGATTTTAAAAGACA
64 TAGGGCACGATTCCAC-AATCACCAAACATCAAATCACATTCGTTTAAGGGATTTTAAAAGACA
*
82604533 TGAGTGAAATTTTGAAGTGATATTCGATTATTTTGAGCAAAC
1 TGAGTGAAATTTTGAAG-GATATTCGATTATTTTGAACAAAC
82604575 ACGAAATTGC
Statistics
Matches: 142, Mismatches: 21, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
127 3 0.02
128 50 0.35
129 4 0.03
130 12 0.08
131 60 0.42
132 13 0.09
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (126 bp):
TGAGTGAAATTTTGAAGGATATTCGATTATTTTGAACAAACGAAAAAGCGCAACCCAACACAATA
GGGCACGATTCCACAATCACCAAACATCAAATCACATTCGTTTAAGGGATTTTAAAAGACA
Found at i:82604546 original size:128 final size:130
Alignment explanation
Indices: 82604378--82604632 Score: 383
Period size: 128 Copynumber: 2.0 Consensus size: 130
82604368 GAATATCGCC
* *
82604378 TTCGTTTTGAAGGGTTTTTAATAAACATGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAGC
1 TTCGTTTTGAAGGGATTTTAATAAACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGC
82604443 AAACGA-GAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAATCAC
66 AAAC-ACGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAATCAC
82604507 A
130 A
* *
82604508 TTCG-TTT-AAGGGATTTTAA-AAGACATGAGTGAAATTTTGAAGTGATATTCGATTATTTTGAG
1 TTCGTTTTGAAGGGATTTTAATAA-ACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAG
* * * * *
82604570 CAAACACGAAATTGCAACCTAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATGTCAAATC
65 CAAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAATC
82604633 TCGTCTTCGT
Statistics
Matches: 114, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
127 3 0.03
128 104 0.91
129 3 0.03
130 4 0.04
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (130 bp):
TTCGTTTTGAAGGGATTTTAATAAACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGC
AAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAATCACA
Found at i:82608385 original size:131 final size:132
Alignment explanation
Indices: 82608024--82608408 Score: 540
Period size: 132 Copynumber: 2.9 Consensus size: 132
82608014 GCAATCTTCG
* * ** *
82608024 GCCTACTCCGCTACAACCTTAGGGAGCTAGGATAGTGGCTTGAATCTTGCTTCACTACAATTTCA
1 GCCTACTCCGCTACAACTTTAGGGAGCTAGGATAGTGGCTTAAATC-TGCTTCACTGTAACTTCA
* * * * * *
82608089 GGAAGACTAGATTCACCGTCTTTGATCTGCTCCACTGCAACCTCA-AGGAGACAAGATCTAAAAT
65 GGAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGGA-ACAAGATCTAAAAT
82608153 TTCA
129 TTCA
* * *
82608157 GCCTACTCCGCTACAACTTTAGGAAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGTAACTTCAG
1 GCCTACTCCGCTACAACTTTAGGGAGCTAGGATAGTGGCTTAAATCTGCTTCACTGTAACTTCAG
* *
82608222 GAAGCCAAGATTCGCCGTCTTCGATCTACTTCACTGCAACTTCAGGGGAACAAGATCTAAAATTT
66 GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGGAACAAGATCTAAAATTT
*
82608287 TA
131 CA
* *
82608289 GCCTACTCCACTACAACTTTAGGGAGCTAGG-TAGTGGTTTAAATCTGCTTCACTGTAACTTCAG
1 GCCTACTCCGCTACAACTTTAGGGAGCTAGGATAGTGGCTTAAATCTGCTTCACTGTAACTTCAG
* * *
82608353 GAAGCCAAGATTCACCGTCTCCGATCTGCTTCACTGCAACTTTAGGGAAACAAGAT
66 GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGGAACAAGAT
82608409 TTGTAGGATT
Statistics
Matches: 225, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
131 82 0.36
132 99 0.44
133 44 0.20
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
GCCTACTCCGCTACAACTTTAGGGAGCTAGGATAGTGGCTTAAATCTGCTTCACTGTAACTTCAG
GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGGAACAAGATCTAAAATTT
CA
Found at i:82620131 original size:131 final size:125
Alignment explanation
Indices: 82619983--82620319 Score: 356
Period size: 128 Copynumber: 2.6 Consensus size: 125
82619973 TTAAAAAGCG
** * * * ** * *
82619983 TGAGTGAAATTCCGAAGGAATCTTCAATTGTTTTGAACAAATGAAAAAGCGCAATCTAGCACGAT
1 TGAGTGAAATTTTGAAGG-ATATTCGATTATTTTGAACAAA-GAAAAATTGCAACCTAGCACGTT
*
82620048 AGGGCACGATTCTCA-AATCACCAAACATCGAACATCACCTTCGTTTTGAAGGGTTTTTAATAA-
64 AGGGCACGATTC-CACAATCACCAAACATC-AA-ATCACCTTCG-TTT-AAGGGATTTTAA-AAG
82620111 ACA
123 ACA
* * * *
82620114 TGAGTGAAATTTTGAAGGGATATTTGATTATTTT-AAGCAAACGAGAAATTGCAACCCAACACGT
1 TGAGTGAAATTTTGAA-GGATATTCGATTATTTTGAA-CAAA-GAAAAATTGCAACCTAGCACGT
** *
82620178 TAGGGCACGATTCCACGAATTGCCAAATATCAAATCACCTTCGTTTAAGGGATTTTAAAAGACA
63 TAGGGCACGATTCCAC-AATCACCAAACATCAAATCACCTTCGTTTAAGGGATTTTAAAAGACA
* *
82620242 TGAGTGAAATTTTGAAGTGATATTCGATTATTTTGAGCAAACACAAAATTGCAACCTAGCACGTT
1 TGAGTGAAATTTTGAAG-GATATTCGATTATTTTGAACAAAGA-AAAATTGCAACCTAGCACGTT
82620307 AGGGCACGATTCC
64 AGGGCACGATTCC
82620320 GCGAATTGTC
Statistics
Matches: 174, Mismatches: 24, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
127 4 0.02
128 80 0.46
129 4 0.02
130 14 0.08
131 59 0.34
132 13 0.07
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (125 bp):
TGAGTGAAATTTTGAAGGATATTCGATTATTTTGAACAAAGAAAAATTGCAACCTAGCACGTTAG
GGCACGATTCCACAATCACCAAACATCAAATCACCTTCGTTTAAGGGATTTTAAAAGACA
Found at i:82620325 original size:128 final size:128
Alignment explanation
Indices: 82619865--82620355 Score: 413
Period size: 131 Copynumber: 3.8 Consensus size: 128
82619855 GTGAAATCCC
* ** * * * *
82619865 GAAGGGATATTCGATTATTTGATA-CAAACGGGAAATTGCAACCCAGCACGATAGGGCACTACTC
1 GAAGGGATATTCGATTATTTTA-AGCAAACGAAAAATTGCAACCTAGCACGTTAGGGCACGATTC
* * ** * ** * * *
82619929 CCCGAATTTCCAAACGTCGAGTATTTCCTTTGTTTTAAAGCG-TTTTAA-AAAGCGTGAGTGAAA
65 CACGAATTGCCAAATATC-A-AATCACCTTCG-TTT-AAGGGATTTTAATAAA-CATGAGTGAAA
**
82619992 TTCC
125 TTTT
* * * * * ** * *
82619996 GAAGGAATCTTCAATTGTTTTGAA-CAAATGAAAAAGCGCAATCTAGCACGATAGGGCACGATTC
1 GAAGGGATATTCGATTATTTT-AAGCAAACGAAAAATTGCAACCTAGCACGTTAGGGCACGATTC
** * *
82620060 TCA--AATCACCAAACATCGAACATCACCTTCGTTTTGAAGGGTTTTTAATAAACATGAGTGAAA
65 -CACGAATTGCCAAATATC-AA-ATCACCTTCG-TTT-AAGGGATTTTAATAAACATGAGTGAAA
82620123 TTTT
125 TTTT
* * * *
82620127 GAAGGGATATTTGATTATTTTAAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
1 GAAGGGATATTCGATTATTTTAAGCAAACGAAAAATTGCAACCTAGCACGTTAGGGCACGATTCC
82620192 ACGAATTGCCAAATATCAAATCACCTTCGTTTAAGGGATTTTAA-AAGACATGAGTGAAATTTT
66 ACGAATTGCCAAATATCAAATCACCTTCGTTTAAGGGATTTTAATAA-ACATGAGTGAAATTTT
* *
82620255 GAAGTGATATTCGATTATTTTGAGCAAAC-ACAAAATTGCAACCTAGCACGTTAGGGCACGATTC
1 GAAGGGATATTCGATTATTTTAAGCAAACGA-AAAATTGCAACCTAGCACGTTAGGGCACGATTC
* * *
82620319 CGCGAATTGTCAAATATCAAATCTCATCTTCGTTTAA
65 CACGAATTGCCAAATATCAAA--TCACCTTCGTTTAA
82620356 AAGAATTTAT
Statistics
Matches: 295, Mismatches: 53, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
127 3 0.01
128 102 0.35
129 3 0.01
130 55 0.19
131 116 0.39
132 16 0.05
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (128 bp):
GAAGGGATATTCGATTATTTTAAGCAAACGAAAAATTGCAACCTAGCACGTTAGGGCACGATTCC
ACGAATTGCCAAATATCAAATCACCTTCGTTTAAGGGATTTTAATAAACATGAGTGAAATTTT
Found at i:82623312 original size:26 final size:26
Alignment explanation
Indices: 82623283--82623349 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
82623273 ATTTGGACTT
* *
82623283 TTGGGTTTGGGTTTAAGTTTGTGCCA
1 TTGGGTTTGGTTTTAAGTTTGGGCCA
82623309 TTGGGTTTGGTTTTAAGTTTGGGCCA
1 TTGGGTTTGGTTTTAAGTTTGGGCCA
82623335 TTGGGTTTGGTTTTA
1 TTGGGTTTGGTTTTA
82623350 GGATATTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.10, C:0.06, G:0.34, T:0.49
Consensus pattern (26 bp):
TTGGGTTTGGTTTTAAGTTTGGGCCA
Found at i:82632297 original size:28 final size:28
Alignment explanation
Indices: 82632266--82632321 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
82632256 TTTCTAATTA
* * *
82632266 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
82632294 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
82632322 TATAAATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:82632418 original size:14 final size:14
Alignment explanation
Indices: 82632373--82632437 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
82632363 TTATTTTATC
*
82632373 ATATATTTTATCTAT
1 ATATATTTTAT-TTT
* * *
82632388 AAATTATATTATATT
1 ATA-TATTTTATTTT
82632403 ATATATTTTATTTT
1 ATATATTTTATTTT
*
82632417 ATATA-TTT-CTTT
1 ATATATTTTATTTT
82632429 ATATATTTT
1 ATATATTTT
82632438 TATAAAATTG
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.20
13 6 0.15
14 14 0.35
15 5 0.12
16 7 0.17
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (14 bp):
ATATATTTTATTTT
Found at i:82632770 original size:15 final size:15
Alignment explanation
Indices: 82632752--82632879 Score: 57
Period size: 15 Copynumber: 8.1 Consensus size: 15
82632742 TCTATCTTTC
82632752 TTATATTTTTATATA
1 TTATATTTTTATATA
*
82632767 TTATTTTTTTATACTA
1 TTATATTTTTATA-TA
*
82632783 TT-TATTTTACTATATT
1 TTATATTTT--TATATA
**
82632799 TTATATGCAAATTACT-TA
1 TTATAT---TTTTA-TATA
82632817 TTATATTTTTAT-TA
1 TTATATTTTTATATA
* * *
82632831 TTTTATATTTTATTTCC
1 TTATAT-TTTTATAT-A
82632848 TTATA-TTTTATTCATA
1 TTATATTTTTA-T-ATA
*
82632864 TTATATTATTATATA
1 TTATATTTTTATATA
82632879 T
1 T
82632880 AACTTATTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 28
0.67 0.11 0.22
Matches are distributed among these distances:
14 8 0.09
15 35 0.41
16 15 0.18
17 16 0.19
18 9 0.11
19 1 0.01
20 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (15 bp):
TTATATTTTTATATA
Found at i:82632773 original size:13 final size:13
Alignment explanation
Indices: 82632755--82632804 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
82632745 ATCTTTCTTA
*
82632755 TATTTTTATATAT
1 TATTTTTATATAC
*
82632768 TATTTTTTTATAC
1 TATTTTTATATAC
82632781 TATTTATT-T-TAC
1 TATTT-TTATATAC
82632793 TATATTTTATAT
1 TAT-TTTTATAT
82632805 GCAAATTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 8 0.26
13 20 0.65
14 3 0.10
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (13 bp):
TATTTTTATATAC
Found at i:82634158 original size:14 final size:14
Alignment explanation
Indices: 82634139--82634171 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
82634129 CAAACTAACC
82634139 CCTAACCC-AATAAA
1 CCTAACCCGAAT-AA
82634153 CCTAACCCGAATAA
1 CCTAACCCGAATAA
82634167 CCTAA
1 CCTAA
82634172 TAATCCTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 15 0.83
15 3 0.17
ACGTcount: A:0.45, C:0.36, G:0.03, T:0.15
Consensus pattern (14 bp):
CCTAACCCGAATAA
Found at i:82634191 original size:23 final size:23
Alignment explanation
Indices: 82634142--82634194 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
82634132 ACTAACCCCT
*
82634142 AACCCAATAAACCTAACCCGAAT
1 AACCCAATAAACCTAACCCGAAG
* *
82634165 AACCTAATAATCCTAACCC-AAGG
1 AACCCAATAAACCTAACCCGAA-G
82634188 AACCCAA
1 AACCCAA
82634195 AAGCCCAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 2 0.08
23 23 0.92
ACGTcount: A:0.47, C:0.34, G:0.06, T:0.13
Consensus pattern (23 bp):
AACCCAATAAACCTAACCCGAAG
Found at i:82639934 original size:15 final size:16
Alignment explanation
Indices: 82639916--82639948 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
82639906 GTTTTAAATA
*
82639916 AATAACTTT-TATTTT
1 AATAAATTTATATTTT
82639931 AATAAATTTATATTTT
1 AATAAATTTATATTTT
82639947 AA
1 AA
82639949 ATTGAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
AATAAATTTATATTTT
Found at i:82642247 original size:106 final size:106
Alignment explanation
Indices: 82642096--82642345 Score: 367
Period size: 106 Copynumber: 2.4 Consensus size: 106
82642086 AATAGAGTGA
* * *
82642096 TAACTACACCACACCCAAAG-ACCGTAAAGCAAAGCCCGTAGGCACAAATATCCTATCATGTAAT
1 TAACTACACCACA-CCAAAGCACCATAATGCAAAGCTCGTAGGCACAAATATCCTATCATGTAAT
*
82642160 ATATTTCATCCCTCCACTACACCAAATGGCTCAAAAAAGAGT
65 ATATTTCATCCCTCCACCACACCAAATGGCTCAAAAAAGAGT
* * * *
82642202 TAACTACACCACATCAAGGCATCATAATGCAAAGCTCGTATGCACAAATATCCTATCATGTAATA
1 TAACTACACCACACCAAAGCACCATAATGCAAAGCTCGTAGGCACAAATATCCTATCATGTAATA
* * *
82642267 TATTTCATCCCTTCACCACACCAAATGGCTTAAAAAAGTGT
66 TATTTCATCCCTCCACCACACCAAATGGCTCAAAAAAGAGT
* *
82642308 TAACTACACCACACCAAAGCACCATAGTACAAAGCTCG
1 TAACTACACCACACCAAAGCACCATAATGCAAAGCTCG
82642346 GTAATCCATA
Statistics
Matches: 127, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
105 4 0.03
106 123 0.97
ACGTcount: A:0.39, C:0.28, G:0.11, T:0.22
Consensus pattern (106 bp):
TAACTACACCACACCAAAGCACCATAATGCAAAGCTCGTAGGCACAAATATCCTATCATGTAATA
TATTTCATCCCTCCACCACACCAAATGGCTCAAAAAAGAGT
Found at i:82644405 original size:27 final size:26
Alignment explanation
Indices: 82644375--82644459 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 26
82644365 AATATGTATA
*
82644375 TATAAAAATTGTTTGAAATAAATAATG
1 TATAAAAA-TATTTGAAATAAATAATG
* * *
82644402 TAT-AAAATATCTAAAATAAATAATA
1 TATAAAAATATTTGAAATAAATAATG
* *
82644427 TGTAAAAGAAATTTGAAATAAATAATG
1 TATAAAA-ATATTTGAAATAAATAATG
82644454 TATAAA
1 TATAAA
82644460 CCGTTTAAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
25 16 0.35
26 7 0.15
27 23 0.50
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.33
Consensus pattern (26 bp):
TATAAAAATATTTGAAATAAATAATG
Found at i:82645389 original size:19 final size:21
Alignment explanation
Indices: 82645354--82645394 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
82645344 TAAAAGAAGG
*
82645354 AAATAAATGAATAAACATAAA
1 AAATAAATGAATAAACAGAAA
82645375 AAATAAA-G-ATAAACAGAAA
1 AAATAAATGAATAAACAGAAA
82645394 A
1 A
82645395 TGAAAGAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 1 0.05
21 7 0.37
ACGTcount: A:0.73, C:0.05, G:0.07, T:0.15
Consensus pattern (21 bp):
AAATAAATGAATAAACAGAAA
Found at i:82659056 original size:58 final size:58
Alignment explanation
Indices: 82658981--82659159 Score: 295
Period size: 58 Copynumber: 3.1 Consensus size: 58
82658971 GTCAATGTTT
* * *
82658981 TTTGTCAAGTGTTCTTTATCTTCTTTAACAACTGATAACTTGAGACTTCCAATCATTA
1 TTTGACAAGTGTTCTTTATCTTCTTTAACAGCTGATAACTTGGGACTTCCAATCATTA
*
82659039 TTTGACAAGTGTTCTTTATCTTCCTTAACAGCTGATAACTTGGGACTTCCAATCATTA
1 TTTGACAAGTGTTCTTTATCTTCTTTAACAGCTGATAACTTGGGACTTCCAATCATTA
* * *
82659097 TTTGACAAGTGTTCTTTATCTTCTTTGACAGCTGATAACTTGGGGCTTCCAATCATTC
1 TTTGACAAGTGTTCTTTATCTTCTTTAACAGCTGATAACTTGGGACTTCCAATCATTA
82659155 TTTGA
1 TTTGA
82659160 ATAATCCAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 113 1.00
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.42
Consensus pattern (58 bp):
TTTGACAAGTGTTCTTTATCTTCTTTAACAGCTGATAACTTGGGACTTCCAATCATTA
Found at i:82672497 original size:21 final size:22
Alignment explanation
Indices: 82672473--82672513 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
82672463 GTTTTATTTA
*
82672473 TTATT-GCATTTATTTTTTTCT
1 TTATTAGCATTTATTATTTTCT
*
82672494 TTATTAGTATTTATTATTTT
1 TTATTAGCATTTATTATTTT
82672514 ATTGGTTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.71
Consensus pattern (22 bp):
TTATTAGCATTTATTATTTTCT
Found at i:82675210 original size:21 final size:21
Alignment explanation
Indices: 82675184--82675240 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
82675174 GAAGCAGTAT
*
82675184 ACGACACATAAAGTGCCTAAA
1 ACGACACATATAGTGCCTAAA
** *
82675205 ACGACACACGTAGTGCCTAAT
1 ACGACACATATAGTGCCTAAA
82675226 ACGACACATATAGTG
1 ACGACACATATAGTG
82675241 TTTGATCGAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.40, C:0.25, G:0.18, T:0.18
Consensus pattern (21 bp):
ACGACACATATAGTGCCTAAA
Found at i:82675705 original size:12 final size:12
Alignment explanation
Indices: 82675688--82675720 Score: 59
Period size: 11 Copynumber: 2.8 Consensus size: 12
82675678 CATTTAATAT
82675688 TTAAATTTCTTA
1 TTAAATTTCTTA
82675700 TTAAATTTC-TA
1 TTAAATTTCTTA
82675711 TTAAATTTCT
1 TTAAATTTCT
82675721 ACTTTAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (12 bp):
TTAAATTTCTTA
Found at i:82675731 original size:12 final size:11
Alignment explanation
Indices: 82675688--82675731 Score: 61
Period size: 12 Copynumber: 3.8 Consensus size: 11
82675678 CATTTAATAT
82675688 TTAAATTTCTTA
1 TTAAATTTC-TA
82675700 TTAAATTTCTA
1 TTAAATTTCTA
82675711 TTAAATTTCTA
1 TTAAATTTCTA
*
82675722 CTTTAATTTC
1 -TTAAATTTC
82675732 AATTTTAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 13 0.43
12 17 0.57
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (11 bp):
TTAAATTTCTA
Found at i:82676181 original size:27 final size:27
Alignment explanation
Indices: 82676151--82676205 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
82676141 CCTTCTTTCC
*
82676151 TGTTTCCACTGCTTTTTGTTTCTTTTA
1 TGTTTCCACTCCTTTTTGTTTCTTTTA
****
82676178 TGTTTTGTTTCCTTTTTGTTTCTTTTA
1 TGTTTCCACTCCTTTTTGTTTCTTTTA
82676205 T
1 T
82676206 TACATGCTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.05, C:0.15, G:0.11, T:0.69
Consensus pattern (27 bp):
TGTTTCCACTCCTTTTTGTTTCTTTTA
Found at i:82676183 original size:16 final size:16
Alignment explanation
Indices: 82676164--82676198 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
82676154 TTCCACTGCT
82676164 TTTTGTTT-CTTTTATG
1 TTTTGTTTCCTTTT-TG
82676180 TTTTGTTTCCTTTTTG
1 TTTTGTTTCCTTTTTG
82676196 TTT
1 TTT
82676199 CTTTTATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.03, C:0.09, G:0.11, T:0.77
Consensus pattern (16 bp):
TTTTGTTTCCTTTTTG
Found at i:82676269 original size:15 final size:15
Alignment explanation
Indices: 82676249--82676287 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
82676239 TAATATAATC
82676249 ATTTAATAAACATCT
1 ATTTAATAAACATCT
*
82676264 ATTTAATAAATATCT
1 ATTTAATAAACATCT
82676279 ATTTAATAA
1 ATTTAATAA
82676288 TTAATTATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (15 bp):
ATTTAATAAACATCT
Found at i:82677813 original size:25 final size:25
Alignment explanation
Indices: 82677752--82677814 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
82677742 ATTCATGTAT
* *
82677752 GCTCATACGAGCTATGAATCAGTAT
1 GCTCATACGAGCTATGAATCAGAAA
* *
82677777 GCTC-TAATGAGCTATGAATCGGAAA
1 GCTCAT-ACGAGCTATGAATCAGAAA
82677802 GCTCATACGAGCT
1 GCTCATACGAGCT
82677815 GTAGTGTGTC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
24 1 0.03
25 29 0.94
26 1 0.03
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTATGAATCAGAAA
Found at i:82679279 original size:18 final size:18
Alignment explanation
Indices: 82679258--82679292 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
82679248 AAAAATCACA
82679258 TTTTTATATTT-AAAATAT
1 TTTTTA-ATTTCAAAATAT
82679276 TTTTTAATTTCAAAATA
1 TTTTTAATTTCAAAATA
82679293 CATTGTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTTAATTTCAAAATAT
Found at i:82683406 original size:15 final size:15
Alignment explanation
Indices: 82683374--82683402 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
82683364 ATTTTATATG
82683374 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
82683389 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
82683403 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:82684402 original size:16 final size:16
Alignment explanation
Indices: 82684383--82684420 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
82684373 AAATTAAATT
82684383 ATGAGAAATTTTATAA
1 ATGAGAAATTTTATAA
82684399 ATGAGAAATTTTATAA
1 ATGAGAAATTTTATAA
82684415 ATGAGA
1 ATGAGA
82684421 GTCGAATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (16 bp):
ATGAGAAATTTTATAA
Found at i:82684617 original size:45 final size:44
Alignment explanation
Indices: 82684539--82684671 Score: 112
Period size: 45 Copynumber: 3.0 Consensus size: 44
82684529 ATAGGATCCA
* **
82684539 ATATGTGTTTTCGTGTAAGACCACATCTT-GGACATTGGCATCGAT
1 ATATGTG-ATTCGTGTAAGACCATGT-TTGGGACATTGGCATCGAT
* * *
82684584 ATATGTGGTTACGTGTAAGACCATGTTTGGGACATCGGCGTCG-T
1 ATATGTGATT-CGTGTAAGACCATGTTTGGGACATTGGCATCGAT
* * * * *
82684628 AT-T-TAATTCGTGTAAGACCCTGTCTGGGACAGTGACATCGAT
1 ATATGTGATTCGTGTAAGACCATGTTTGGGACATTGGCATCGAT
82684670 AT
1 AT
82684672 GTGACAGCAT
Statistics
Matches: 72, Mismatches: 13, Indels: 9
0.77 0.14 0.10
Matches are distributed among these distances:
41 26 0.36
42 6 0.08
43 1 0.01
44 7 0.10
45 32 0.44
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (44 bp):
ATATGTGATTCGTGTAAGACCATGTTTGGGACATTGGCATCGAT
Found at i:82697486 original size:29 final size:31
Alignment explanation
Indices: 82697433--82697503 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 31
82697423 TATTGTCTAT
82697433 ATTTTTAT-ATTTTTTAAAAGATT-AAATCA-A
1 ATTTTTATCA-TTTTTAAAAGATTAAAAT-ATA
*
82697463 ATTTTTATCATTTTTAAGAG-TTAAAATATA
1 ATTTTTATCATTTTTAAAAGATTAAAATATA
82697493 A-TTTTATCATT
1 ATTTTTATCATT
82697504 ACTAATTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
29 13 0.35
30 23 0.62
31 1 0.03
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.52
Consensus pattern (31 bp):
ATTTTTATCATTTTTAAAAGATTAAAATATA
Found at i:82702194 original size:17 final size:17
Alignment explanation
Indices: 82702153--82702187 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
82702143 TTCTTATACA
*
82702153 AATTTGACATTTATTCC
1 AATTTGATATTTATTCC
82702170 AATTTGATATTTATTCC
1 AATTTGATATTTATTCC
82702187 A
1 A
82702188 TTATGATTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (17 bp):
AATTTGATATTTATTCC
Found at i:82710150 original size:23 final size:23
Alignment explanation
Indices: 82710115--82710160 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
82710105 AATGCAACAA
* * *
82710115 GAGACCAGTAGCAGTTCAGCATG
1 GAGACCAGCAGCAGCTCAACATG
*
82710138 GAGACTAGCAGCAGCTCAACATG
1 GAGACCAGCAGCAGCTCAACATG
82710161 AAGATCAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.28, T:0.15
Consensus pattern (23 bp):
GAGACCAGCAGCAGCTCAACATG
Found at i:82710914 original size:34 final size:37
Alignment explanation
Indices: 82710846--82710914 Score: 99
Period size: 38 Copynumber: 1.9 Consensus size: 37
82710836 TTAGTATCTA
82710846 TATTCTAATATTTATTATTTATCATTTTAAATAAAATT
1 TATTCTAATATTTATTA-TTATCATTTTAAATAAAATT
*
82710884 TATTCTAATATTT-TTA-TAT-ATTTTATATAAA
1 TATTCTAATATTTATTATTATCATTTTAAATAAA
82710915 TTGTTTCACC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 11 0.37
35 3 0.10
37 3 0.10
38 13 0.43
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (37 bp):
TATTCTAATATTTATTATTATCATTTTAAATAAAATT
Found at i:82711936 original size:16 final size:17
Alignment explanation
Indices: 82711915--82711966 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 17
82711905 GAGTGGAAAG
82711915 AAAATTAGAAAGA-TGA
1 AAAATTAGAAAGAGTGA
*
82711931 AAAATTA-AAAAAGTGA
1 AAAATTAGAAAGAGTGA
* *
82711947 AAAAATAGAAAGATTGA
1 AAAATTAGAAAGAGTGA
82711964 AAA
1 AAA
82711967 TATAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 4 0.13
16 16 0.53
17 10 0.33
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.17
Consensus pattern (17 bp):
AAAATTAGAAAGAGTGA
Found at i:82720334 original size:21 final size:20
Alignment explanation
Indices: 82720299--82720344 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
82720289 CTATATGAGT
* *
82720299 AAATTTAACTCAATTTAATG
1 AAATTTAACTCAATTCAATC
*
82720319 AAATTTATATTCAATTCAATC
1 AAATTTA-ACTCAATTCAATC
82720340 AAATT
1 AAATT
82720345 CACATTTTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.41
Consensus pattern (20 bp):
AAATTTAACTCAATTCAATC
Found at i:82724432 original size:48 final size:49
Alignment explanation
Indices: 82724358--82724456 Score: 173
Period size: 48 Copynumber: 2.0 Consensus size: 49
82724348 ATTAGCCGAG
* *
82724358 AAAAAGTAACCTTTTTACCATCAGGGGAAAATTTTTACAAATTTTATCT
1 AAAAAATAACCTTTTTACCATAAGGGGAAAATTTTTACAAATTTTATCT
82724407 AAAAAATAACC-TTTTACCATAAGGGGAAAATTTTTACAAATTTTATCT
1 AAAAAATAACCTTTTTACCATAAGGGGAAAATTTTTACAAATTTTATCT
82724455 AA
1 AA
82724457 CATCACATAC
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 38 0.79
49 10 0.21
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.35
Consensus pattern (49 bp):
AAAAAATAACCTTTTTACCATAAGGGGAAAATTTTTACAAATTTTATCT
Found at i:82727589 original size:18 final size:18
Alignment explanation
Indices: 82727566--82727605 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
82727556 ATGTGCTTTA
82727566 TTAAAGAAAATTACAAGG
1 TTAAAGAAAATTACAAGG
82727584 TTAAAGAAAATTACAAGG
1 TTAAAGAAAATTACAAGG
82727602 TTAA
1 TTAA
82727606 TTAATAAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.55, C:0.05, G:0.15, T:0.25
Consensus pattern (18 bp):
TTAAAGAAAATTACAAGG
Found at i:82728186 original size:18 final size:18
Alignment explanation
Indices: 82728147--82728181 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
82728137 TAATAAGGGC
82728147 AAAA-GTGTAATTTTGTA
1 AAAATGTGTAATTTTGTA
82728164 AAAATGTGTAACTTTTGT
1 AAAATGTGTAA-TTTTGT
82728182 TAAATTGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 6 0.38
19 6 0.38
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.43
Consensus pattern (18 bp):
AAAATGTGTAATTTTGTA
Found at i:82728530 original size:43 final size:43
Alignment explanation
Indices: 82728476--82728622 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 43
82728466 GTCGAGATGA
* * * * * *
82728476 GATTACATGTAAAACTATGTCTGGGACATTGGCATTG-TATTGT
1 GATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTA-TAT
*
82728519 GATTACGTGTAAGACCATGTCTAGAACATTGGCATCGTTATAT
1 GATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTATAT
* * * *
82728562 GATTTCGTGTAAGACCGTGTCTTGGACATTGGCATCGATATGA-
1 GATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAT-AT
* *
82728605 GATAACATGTAAGACCAT
1 GATTACGTGTAAGACCAT
82728623 ATCTGGGATA
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
43 83 0.97
44 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTATAT
Found at i:82735501 original size:40 final size:38
Alignment explanation
Indices: 82735382--82735518 Score: 132
Period size: 37 Copynumber: 3.5 Consensus size: 38
82735372 CTTCGAGTCG
* * * *
82735382 ATGAGACACTGAGTGTCAATTTACTACTTTGGATTAATTCG
1 ATGAGACACTGGGTGCCAATTTACTAC-TT-GATT-ATCCA
* * * *
82735423 ATGAGGCACTGGGTGCCAATTTACTTC-TGTTTAACCA
1 ATGAGACACTGGGTGCCAATTTACTACTTGATTATCCA
82735460 ATGAGACACTGGGTGCCAATTTACTACTTCGAATTATCCA
1 ATGAGACACTGGGTGCCAATTTACTACTT-G-ATTATCCA
* *
82735500 ATGAGGCATTGGGTGCCAA
1 ATGAGACACTGGGTGCCAA
82735519 ACTAGTGTTT
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
37 27 0.34
38 4 0.05
39 2 0.03
40 23 0.29
41 23 0.29
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (38 bp):
ATGAGACACTGGGTGCCAATTTACTACTTGATTATCCA
Found at i:82738905 original size:26 final size:26
Alignment explanation
Indices: 82738870--82738920 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
82738860 AATGTGAAAG
*
82738870 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
82738896 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
82738921 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:82739054 original size:104 final size:103
Alignment explanation
Indices: 82738792--82739057 Score: 460
Period size: 103 Copynumber: 2.6 Consensus size: 103
82738782 TTGTATATAA
** * *
82738792 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
82738857 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
82738895 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
82738960 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
*
82738999 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCA
82739058 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
103 92 0.60
104 61 0.40
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:82745918 original size:26 final size:26
Alignment explanation
Indices: 82745883--82745933 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
82745873 AATGTGAAAG
*
82745883 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
82745909 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
82745934 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:82746067 original size:104 final size:103
Alignment explanation
Indices: 82745805--82746070 Score: 451
Period size: 103 Copynumber: 2.6 Consensus size: 103
82745795 TTGTATATAA
** * *
82745805 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
82745870 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
82745908 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
82745973 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
* *
82746012 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGCTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCA
82746071 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
103 92 0.61
104 60 0.39
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:82751025 original size:57 final size:57
Alignment explanation
Indices: 82750944--82751061 Score: 159
Period size: 57 Copynumber: 2.1 Consensus size: 57
82750934 GGAAATGGTG
* *
82750944 AAATAGAGAAATAGGAAATATTTGAAAATGATTATGGTTTTCT-TCAAAATGAAAATGA
1 AAATAGAGAAATA-GAAATATTTGAAAATGAATATGGTTTCCTCT-AAAATGAAAATGA
* *
82751002 AAATGGAGAAAT-GAAATAATTTGAAAATGAATGTGGTTTCCTCTAAAATGAAAATGA
1 AAATAGAGAAATAGAAAT-ATTTGAAAATGAATATGGTTTCCTCTAAAATGAAAATGA
82751059 AAA
1 AAA
82751062 ATGACCTGAA
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
56 5 0.09
57 37 0.69
58 12 0.22
ACGTcount: A:0.49, C:0.04, G:0.18, T:0.29
Consensus pattern (57 bp):
AAATAGAGAAATAGAAATATTTGAAAATGAATATGGTTTCCTCTAAAATGAAAATGA
Found at i:82755798 original size:18 final size:18
Alignment explanation
Indices: 82755777--82755811 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
82755767 ACATAACTGC
82755777 AAATTAGTATCAATACTA
1 AAATTAGTATCAATACTA
82755795 AAATTAGTATCAATACT
1 AAATTAGTATCAATACT
82755812 TTATAGAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (18 bp):
AAATTAGTATCAATACTA
Found at i:82758631 original size:14 final size:14
Alignment explanation
Indices: 82758608--82758641 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
82758598 TACAATATCT
*
82758608 AAATAATAACAATA
1 AAATAGTAACAATA
82758622 AAATAGTAACAATA
1 AAATAGTAACAATA
*
82758636 TAATAG
1 AAATAG
82758642 CAAATAACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (14 bp):
AAATAGTAACAATA
Done.