Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 250 of 311
Found at i:83631237 original size:13 final size:13
Alignment explanation
Indices: 83631219--83631252 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
83631209 TTAATTGAGA
* *
83631219 AATTAATTTAGTT
1 AATTAAATTAATT
83631232 AATTAAATTAATT
1 AATTAAATTAATT
83631245 AATTAAAT
1 AATTAAAT
83631253 AATATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
AATTAAATTAATT
Found at i:83642125 original size:40 final size:40
Alignment explanation
Indices: 83642070--83642286 Score: 362
Period size: 40 Copynumber: 5.4 Consensus size: 40
83642060 TGTGCATAGT
* *
83642070 ATTCGTGCGGGTTATTGTAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
83642110 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
* *
83642150 ATTCGTGCAGGTTATTATAACCGGGGTAAGTCCCAAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
*
83642190 ATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
* *
83642230 ATTCGTGCGGGTTATTATAACTGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
*
83642270 ATTCGTGCTGGTTATTA
1 ATTCGTGCGGGTTATTA
83642287 CATCCGAGCC
Statistics
Matches: 167, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 167 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (40 bp):
ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
Found at i:83646584 original size:2 final size:2
Alignment explanation
Indices: 83646571--83646609 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
83646561 TCACAGATCA
* * *
83646571 CT CT CT CG CT CT CT CT CG CT CT CT CT CG CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
83646610 CCCCTTGGAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.51, G:0.08, T:0.41
Consensus pattern (2 bp):
CT
Found at i:83646586 original size:10 final size:10
Alignment explanation
Indices: 83646571--83646607 Score: 74
Period size: 10 Copynumber: 3.7 Consensus size: 10
83646561 TCACAGATCA
83646571 CTCTCTCGCT
1 CTCTCTCGCT
83646581 CTCTCTCGCT
1 CTCTCTCGCT
83646591 CTCTCTCGCT
1 CTCTCTCGCT
83646601 CTCTCTC
1 CTCTCTC
83646608 TCCCCCTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.00, C:0.51, G:0.08, T:0.41
Consensus pattern (10 bp):
CTCTCTCGCT
Found at i:83652251 original size:2 final size:2
Alignment explanation
Indices: 83652244--83652272 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
83652234 CCCCCGCATA
83652244 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
83652273 CCTTTTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:83653446 original size:31 final size:31
Alignment explanation
Indices: 83653393--83653451 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
83653383 TATTTGAGTT
*
83653393 AATTAAGTTATTCGGATCAACTCGAATAAAA
1 AATTAAGTTATTCGGATCAACTCAAATAAAA
* * *
83653424 AATTAAGTTTTTCGGTTTAACTCAAATA
1 AATTAAGTTATTCGGATCAACTCAAATA
83653452 TGAATTACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.36
Consensus pattern (31 bp):
AATTAAGTTATTCGGATCAACTCAAATAAAA
Found at i:83660170 original size:21 final size:21
Alignment explanation
Indices: 83660133--83660181 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
83660123 TTTGAACATT
*
83660133 TAAATTTTATTTAATATTTTTA
1 TAAATTTTATATAATA-TTTTA
83660155 TAAATTTTA-ATAATATTTTA
1 TAAATTTTATATAATATTTTA
*
83660175 TAGATTT
1 TAAATTT
83660182 ACAAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 11 0.44
21 5 0.20
22 9 0.36
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TAAATTTTATATAATATTTTA
Found at i:83660171 original size:28 final size:28
Alignment explanation
Indices: 83660140--83660214 Score: 71
Period size: 28 Copynumber: 2.7 Consensus size: 28
83660130 ATTTAAATTT
*
83660140 TATTTAATATTTTTATAAATTTTAATAA
1 TATTTAATATTTTTATAAATTTTAAAAA
* ** *
83660168 TATTTTATAGATTTACAAATTTTAAAAA
1 TATTTAATATTTTTATAAATTTTAAAAA
* * *
83660196 AATTAAATCTTTTT-TAAAT
1 TATTTAATATTTTTATAAAT
83660215 ATTTTTAATT
Statistics
Matches: 35, Mismatches: 12, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
27 4 0.11
28 31 0.89
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (28 bp):
TATTTAATATTTTTATAAATTTTAAAAA
Found at i:83660271 original size:38 final size:38
Alignment explanation
Indices: 83660187--83660271 Score: 91
Period size: 38 Copynumber: 2.2 Consensus size: 38
83660177 GATTTACAAA
* * *
83660187 TTTTAAAAAAATTAAATCTTTTTTAAATATTTTTAATT
1 TTTTAAAAAAATGAAATATTCTTTAAATATTTTTAATT
** * *
83660225 TTCCAAAAAAATGAAATATTCCTTT-AATTTTTTTATTT
1 TTTTAAAAAAATGAAATATT-CTTTAAATATTTTTAATT
83660263 TTTTAAAAA
1 TTTTAAAAA
83660272 TTAATTTTTT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
38 34 0.92
39 3 0.08
ACGTcount: A:0.41, C:0.06, G:0.01, T:0.52
Consensus pattern (38 bp):
TTTTAAAAAAATGAAATATTCTTTAAATATTTTTAATT
Found at i:83667139 original size:16 final size:18
Alignment explanation
Indices: 83667105--83667142 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
83667095 ATCCTTATTT
*
83667105 AAATAAAATATAATGGTA
1 AAATAAAATATAATAGTA
83667123 AAATAAAATA-AA-AGTA
1 AAATAAAATATAATAGTA
83667139 AAAT
1 AAAT
83667143 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 2 0.11
18 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATAAAATATAATAGTA
Found at i:83675454 original size:51 final size:51
Alignment explanation
Indices: 83675395--83675514 Score: 168
Period size: 51 Copynumber: 2.4 Consensus size: 51
83675385 TTTTCTCTAG
* *
83675395 TTAATTTAAATTAATTAAAAGATAGATAATAAAAAATTATATCATCACTAA
1 TTAATTTAAATTAATTAAAAGATAAATAATAAAAAAATATATCATCACTAA
* * *
83675446 TTAATTTAAACTAATTAAAAGATAAATAATAAAAAAATATATTATCATTAA
1 TTAATTTAAATTAATTAAAAGATAAATAATAAAAAAATATATCATCACTAA
* * *
83675497 ATAAATTAAATTATTTAA
1 TTAATTTAAATTAATTAA
83675515 GTGATAATAT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.37
Consensus pattern (51 bp):
TTAATTTAAATTAATTAAAAGATAAATAATAAAAAAATATATCATCACTAA
Found at i:83680810 original size:7 final size:7
Alignment explanation
Indices: 83680798--83680824 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
83680788 TTATTGTATT
83680798 AAATATA
1 AAATATA
83680805 AAATATA
1 AAATATA
83680812 AAATATA
1 AAATATA
83680819 AAATAT
1 AAATAT
83680825 TATATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AAATATA
Found at i:83680934 original size:31 final size:32
Alignment explanation
Indices: 83680890--83680952 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
83680880 ATAAATATAT
*
83680890 ATATATATAATTATTTTTTAACATATATAATTA
1 ATATATATAATTATTTTATAACATA-ATAATTA
*
83680923 ATATA-AT-ATTATTTTATAATATAATAATTA
1 ATATATATAATTATTTTATAACATAATAATTA
83680953 GACTGAGCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 7 0.25
31 14 0.50
32 2 0.07
33 5 0.18
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (32 bp):
ATATATATAATTATTTTATAACATAATAATTA
Found at i:83684508 original size:21 final size:20
Alignment explanation
Indices: 83684475--83684513 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
83684465 AAGGTTCAAG
83684475 GGTTCGAGATTATGAGTTTGA
1 GGTTCGAGATTAT-AGTTTGA
* *
83684496 GGTTCGGGTTTATAGTTT
1 GGTTCGAGATTATAGTTT
83684514 AAGATTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.18, C:0.05, G:0.33, T:0.44
Consensus pattern (20 bp):
GGTTCGAGATTATAGTTTGA
Found at i:83686066 original size:22 final size:23
Alignment explanation
Indices: 83686027--83686072 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
83686017 AAATATCAAT
*
83686027 TTATTATTTAAGTCTATATTATA
1 TTATTATTTAAGTCTATATGATA
* *
83686050 TTATT-TTTAATTTTATATGATA
1 TTATTATTTAAGTCTATATGATA
83686072 T
1 T
83686073 AAATAATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (23 bp):
TTATTATTTAAGTCTATATGATA
Found at i:83687730 original size:21 final size:22
Alignment explanation
Indices: 83687680--83687730 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
83687670 TTAATTATCA
* *
83687680 TTAT-AGTTTAGGGTTTACGGT
1 TTATGAGTTAAGGGTTTACAGT
*
83687701 ATATG-GTTAAGGGTTTA-AGT
1 TTATGAGTTAAGGGTTTACAGT
83687721 TTATGAGTTA
1 TTATGAGTTA
83687731 CTATTTTAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.45
Consensus pattern (22 bp):
TTATGAGTTAAGGGTTTACAGT
Found at i:83687760 original size:22 final size:25
Alignment explanation
Indices: 83687735--83687788 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 25
83687725 GAGTTACTAT
*
83687735 TTTAAGGTTTATGGATT-AT-G-GG
1 TTTAAGGATTATGGATTAATGGTGG
* *
83687757 TTTATGGATTATGGTTTAATGGTGG
1 TTTAAGGATTATGGATTAATGGTGG
83687782 TTTAAGG
1 TTTAAGG
83687789 GTTGGGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 14 0.56
23 2 0.08
24 1 0.04
25 8 0.32
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.46
Consensus pattern (25 bp):
TTTAAGGATTATGGATTAATGGTGG
Found at i:83687778 original size:15 final size:15
Alignment explanation
Indices: 83687740--83687774 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
83687730 ACTATTTTAA
83687740 GGTTTATGGATTATG
1 GGTTTATGGATTATG
83687755 GGTTTATGGATTAT-
1 GGTTTATGGATTATG
83687769 GGTTTA
1 GGTTTA
83687775 ATGGTGGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:83687857 original size:7 final size:7
Alignment explanation
Indices: 83687814--83687910 Score: 61
Period size: 7 Copynumber: 13.6 Consensus size: 7
83687804 CATTTAGGTG
83687814 TTAGGTGT
1 TTAGG-GT
*
83687822 TAAGGGT
1 TTAGGGT
*
83687829 TAAGGG-
1 TTAGGGT
83687835 TTAGTGGT
1 TTAG-GGT
* *
83687843 TCATGGT
1 TTAGGGT
83687850 TTAGGGT
1 TTAGGGT
* *
83687857 TTATGTT
1 TTAGGGT
*
83687864 TTAGGAT
1 TTAGGGT
* *
83687871 TCATGGT
1 TTAGGGT
*
83687878 TCAGGGT
1 TTAGGGT
*
83687885 TTAGGGA
1 TTAGGGT
83687892 TTAGGAGT
1 TTAGG-GT
83687900 TTAGGGT
1 TTAGGGT
83687907 TTAG
1 TTAG
83687911 ATTAATTAGT
Statistics
Matches: 69, Mismatches: 17, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
6 3 0.04
7 54 0.78
8 12 0.17
ACGTcount: A:0.20, C:0.03, G:0.36, T:0.41
Consensus pattern (7 bp):
TTAGGGT
Found at i:83687895 original size:28 final size:27
Alignment explanation
Indices: 83687824--83687897 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 27
83687814 TTAGGTGTTA
* * *
83687824 AGGGTTAAGGGTTAGTGGTTCATGGTTT
1 AGGGTTTAGGGTTAG-GATTCATGGTTC
**
83687852 AGGGTTTATGTTTTAGGATTCATGGTTC
1 AGGGTTTA-GGGTTAGGATTCATGGTTC
83687880 AGGGTTTAGGGATTAGGA
1 AGGGTTTAGGG-TTAGGA
83687898 GTTTAGGGTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
27 1 0.03
28 31 0.84
29 5 0.14
ACGTcount: A:0.20, C:0.04, G:0.36, T:0.39
Consensus pattern (27 bp):
AGGGTTTAGGGTTAGGATTCATGGTTC
Found at i:83688019 original size:7 final size:7
Alignment explanation
Indices: 83688004--83688069 Score: 87
Period size: 7 Copynumber: 9.4 Consensus size: 7
83687994 TTAATTATCA
*
83688004 TTATAGT
1 TTATGGT
83688011 TTATGGT
1 TTATGGT
83688018 TTATGGT
1 TTATGGT
83688025 TTATGGT
1 TTATGGT
83688032 TTATGGT
1 TTATGGT
*
83688039 TTGTGGT
1 TTATGGT
*
83688046 TTAAGGT
1 TTATGGT
*
83688053 ATATGGT
1 TTATGGT
*
83688060 TTAGGGT
1 TTATGGT
83688067 TTA
1 TTA
83688070 AAGTGTATGA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 51 1.00
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.53
Consensus pattern (7 bp):
TTATGGT
Found at i:83688028 original size:21 final size:21
Alignment explanation
Indices: 83688004--83688078 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
83687994 TTAATTATCA
83688004 TTATAGTTTATGGTTTATGGT
1 TTATAGTTTATGGTTTATGGT
* *
83688025 TTATGGTTTATGGTTTGTGGT
1 TTATAGTTTATGGTTTATGGT
* *
83688046 TTA-AGGTATATGGTTTAGGGT
1 TTATA-GTTTATGGTTTATGGT
* *
83688067 TTAAAGTGTATG
1 TTATAGTTTATG
83688079 AGTTACTATT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
21 44 0.98
22 1 0.02
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (21 bp):
TTATAGTTTATGGTTTATGGT
Found at i:83688113 original size:22 final size:21
Alignment explanation
Indices: 83688043--83688137 Score: 64
Period size: 22 Copynumber: 4.4 Consensus size: 21
83688033 TATGGTTTGT
* **
83688043 GGTTTAAGGTATATGGTTTAG
1 GGTTTAAGGTGTATGAATTAG
* * *
83688064 GGTTTAAAGTGTATGAGTTACT
1 GGTTTAAGGTGTATGAATTA-G
**
83688086 ATTTTAAGGTGTATGAATTATG
1 GGTTTAAGGTGTATGAATTA-G
* * * *
83688108 GGTTTAGGGAGTATGGATTAC
1 GGTTTAAGGTGTATGAATTAG
83688129 GGTTTAAGG
1 GGTTTAAGG
83688138 GTTGGGGTTT
Statistics
Matches: 55, Mismatches: 18, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
21 24 0.44
22 31 0.56
ACGTcount: A:0.26, C:0.02, G:0.32, T:0.40
Consensus pattern (21 bp):
GGTTTAAGGTGTATGAATTAG
Found at i:83688214 original size:324 final size:320
Alignment explanation
Indices: 83687598--83688220 Score: 667
Period size: 324 Copynumber: 1.9 Consensus size: 320
83687588 TGACTAATTG
* * *
83687598 TTTTTTAATTTATATGTTAAATATTTTCTTATATAATTGTAAAAGAGATAGTATTAATTTTAAAA
1 TTTTTTAATTTATATGATAAATATTTTCTTATATAATTATAAAAGAGATAGTATTAAGTTTAAAA
83687663 TATTCAATTAATTATCATTATAGTTTAGGGTTTACGGTATATGGTTAAGGGTTTAAGTTTATGAG
66 TATTCAATTAATTATCATTATAGTTTAGGGTTTACGGTATATGGTTAAGGGTTTAAGTTTA-GAG
* ** * * *
83687728 TTACTATTTTAAGGTTTATGGATTATGGGTTTATGGATTATGGTTTAATGGTGGTTTAAGGGTTG
130 GTACTATTTTAAGGTTTAAAGATTATGAGTTTAT-GATTAAGGTTTAATGATGGTTTAAGGGTT-
* * * * *
83687793 GGGTTTAAGGTCATTTAGGTGTTAGGTGTTAAGGGTTAAGGGTTAGTGGTTCATGGTTTAGGGTT
193 GGGATTAAGGT-ATTAAGGTGTTAGGTGTTAAGGGGTAAGGGTTAGGGGTTAATGGTTTAGGGTT
* * * *
83687858 TATGTTTTAGGATTCATGGTTCAGGGTTTAGGGATTAGGAGTTTAGGGTTTAGATTAATTAGTT
257 TAAGGTTTAGGATTCATGATTCAGGATTTAGGGATTAGGAGTTTAGGGTTTAGATTAATTAGTT
83687922 TTTTTTAATTTATATGATAAATATTTTCTTATATAATTATAAAAGAGATAGTATTAAGTTTAAAA
1 TTTTTTAATTTATATGATAAATATTTTCTTATATAATTATAAAAGAGATAGTATTAAGTTTAAAA
* * * * * * **
83687987 TATTGAATTAATTATCATTATAGTTTATGGTTTATGGTTTATGGTTTATGGTTTGTGGTTTA-AG
66 TATTCAATTAATTATCATTATAGTTTAGGGTTTACGGTATATGGTTAAGGGTTT-AAGTTTAGAG
* * *
83688051 GTA-TATGGTTTAGGGTTTAAAG-TGTATGAGTTACTAT-TTTAAGGTGTATGAATTATGGGTTT
130 GTACTAT--TTTAAGGTTTAAAGAT-TATGAGTT--TATGATTAAGGT-T-T-AATGAT-GGTTT
* * *
83688113 AGGGAGTAT-GGATTACGGT-TTAAGG-GTT-GGGGTTTAAGGGGTAAGGGTTAGGGGTTAA--G
186 AAGG-GT-TGGGATTAAGGTATTAAGGTGTTAGGTG-TTAAGGGGTAAGGGTTAGGGGTTAATGG
* * *
83688172 TGTTAGGTTTTTAAGGTTTAGAGATT-AT-ATTCATGATTTAGGGTTTAGG
248 T-TTAGG-GTTTAAGGTTTAG-GATTCATGATTCAGGATTTAGGGATTAGG
83688221 GGGTAAGGTT
Statistics
Matches: 248, Mismatches: 35, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
322 3 0.01
323 7 0.03
324 159 0.64
325 43 0.17
326 13 0.05
327 4 0.02
328 16 0.06
329 2 0.01
330 1 0.00
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.45
Consensus pattern (320 bp):
TTTTTTAATTTATATGATAAATATTTTCTTATATAATTATAAAAGAGATAGTATTAAGTTTAAAA
TATTCAATTAATTATCATTATAGTTTAGGGTTTACGGTATATGGTTAAGGGTTTAAGTTTAGAGG
TACTATTTTAAGGTTTAAAGATTATGAGTTTATGATTAAGGTTTAATGATGGTTTAAGGGTTGGG
ATTAAGGTATTAAGGTGTTAGGTGTTAAGGGGTAAGGGTTAGGGGTTAATGGTTTAGGGTTTAAG
GTTTAGGATTCATGATTCAGGATTTAGGGATTAGGAGTTTAGGGTTTAGATTAATTAGTT
Found at i:83688482 original size:19 final size:20
Alignment explanation
Indices: 83688441--83688500 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 20
83688431 ATGTTAATTT
*
83688441 AAAAATGATAAAAATCTTCAAA
1 AAAAAT-AT-AAAATCTTAAAA
83688463 AAAAATATAAAAT-TTAAAA
1 AAAAATATAAAATCTTAAAA
83688482 ATAAAA-ATAAAAATCTTAA
1 A-AAAATAT-AAAATCTTAA
83688501 TATATAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 8 0.24
20 14 0.41
21 6 0.18
22 6 0.18
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (20 bp):
AAAAATATAAAATCTTAAAA
Found at i:83694063 original size:42 final size:42
Alignment explanation
Indices: 83693970--83694081 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
83693960 AATATTTTTT
** * *
83693970 TAAAGGTCATTTTTTTAGCGGCGTTTTTGATAAAAGCGCCGC
1 TAAAGGTCATACTTTTAGTGGCGTTTTAGATAAAAGCGCCGC
* * *
83694012 TAAAAGTCATACTTTTAGTGGCGTTTTAGGTAAAAGCGTCG-
1 TAAAGGTCATACTTTTAGTGGCGTTTTAGATAAAAGCGCCGC
* *
83694053 TGAAAGGTCATGACCTTTAGTGGCATTTT
1 T-AAAGGTCAT-ACTTTTAGTGGCGTTTT
83694082 TTTCACATAA
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.02
42 42 0.72
43 15 0.26
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (42 bp):
TAAAGGTCATACTTTTAGTGGCGTTTTAGATAAAAGCGCCGC
Found at i:83696398 original size:18 final size:20
Alignment explanation
Indices: 83696375--83696419 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
83696365 TCCATGGTAT
*
83696375 AAAATAAAT-AAAATGAT-A
1 AAAATAAATAAAAATAATAA
83696393 AAAAT-AATAAAAATAATAA
1 AAAATAAATAAAAATAATAA
83696412 AAAATAAA
1 AAAATAAA
83696420 GATACTAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 3 0.13
18 12 0.52
19 6 0.26
20 2 0.09
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAATAAATAAAAATAATAA
Found at i:83696419 original size:7 final size:8
Alignment explanation
Indices: 83696373--83696419 Score: 51
Period size: 9 Copynumber: 5.6 Consensus size: 8
83696363 AATCCATGGT
83696373 ATAAAATAA
1 ATAAAAT-A
*
83696382 ATAAAATG
1 ATAAAATA
83696390 ATAAAAATA
1 AT-AAAATA
83696399 ATAAAAATA
1 AT-AAAATA
83696408 ATAAAA-A
1 ATAAAATA
83696415 ATAAA
1 ATAAA
83696420 GATACTAGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 6 0.17
8 6 0.17
9 23 0.66
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (8 bp):
ATAAAATA
Found at i:83696513 original size:12 final size:12
Alignment explanation
Indices: 83696489--83696529 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
83696479 GACAAAGTAG
83696489 TAAAAATAA-GA
1 TAAAAATAATGA
83696500 TAAAAATAATGA
1 TAAAAATAATGA
*
83696512 TAATAATAATGAA
1 TAAAAATAATG-A
83696525 TAAAA
1 TAAAA
83696530 TGTATAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
11 9 0.35
12 12 0.46
13 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.24
Consensus pattern (12 bp):
TAAAAATAATGA
Found at i:83698463 original size:44 final size:44
Alignment explanation
Indices: 83698405--83698838 Score: 343
Period size: 44 Copynumber: 9.7 Consensus size: 44
83698395 TCATTCAAAC
* *
83698405 CCACTGCAACTTCAGGG-GTATAAGATTTGTTGCTTCAATTTGCT
1 CCACTGCAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATCTGCT
* * * * * * *
83698449 CCGCTACAATTTCAGAGAGATAAAATTTGCAGCTCCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* *
83698493 CCACTGCAACTTCAGGGAGATAAGATCTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* ** *
83698537 CCACTGCAACTTCAGGGAGATAAGATTTATAATTTGTAACTTTGATCTGTT
1 CCACTGCAACTTCAGGGAGATAAG-------ATTTGTAGCTTCAATCTGCT
* * * * * * * *
83698588 TCACTACCACTTCAGAGAAATAAGATTTGTTATCTTTAGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCT
* * * * *
83698633 CCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCC
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * *
83698677 CCACTACAACTTTAGGGAGATAA-AGTTTATAGCTTTAATTTGCT
1 CCACTGCAACTTCAGGGAGATAAGA-TTTGTAGCTTCAATCTGCT
* * * * *
83698721 CTACTGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCT
* * * * * *
83698766 CCACTACAATTTTA-GGAGATAAGATTTGTGGCTTTAATCTGTT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
*
83698809 CCACTGCAACTTTAGGGAGATAAGATTTGT
1 CCACTGCAACTTCAGGGAGATAAGATTTGT
83698839 CATGACGGCT
Statistics
Matches: 305, Mismatches: 72, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
43 23 0.08
44 190 0.62
45 57 0.19
51 35 0.11
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
Found at i:83698657 original size:140 final size:133
Alignment explanation
Indices: 83698405--83698836 Score: 424
Period size: 140 Copynumber: 3.2 Consensus size: 133
83698395 TCATTCAAAC
* * ** * ** * *
83698405 CCACTGCAACTTCAGGG-GTATAAGATTTGTTGCTTCAATTTGCTCCGCTACAATTTCAGAGAGA
1 CCACTGCAACTTTAGGGAG-ATAAGATTTATAACTTTAATTTGCTCTACTACAACTTCAGAGAAA
* * * * * *
83698469 TAAAATTTGC-AGCTCCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTAACTTCAATC
65 TAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTAACTTTAATC
83698533 TGCT
130 TGCT
* * * *
83698537 CCACTGCAACTTCAGGGAGATAAGATTTATAATTTGTAACTTTGATCTGTTTCACTACCACTTCA
1 CCACTGCAACTTTAGGGAGATAAGATTTATAACTT-TAA-TTTG--C--TCT-ACTACAACTTCA
* * *
83698602 GAGAAATAAGATTTGTTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTAAC
59 GAGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGTAAC
* *
83698666 TTTAACCTGCC
123 TTTAATCTGCT
* * * *
83698677 CCACTACAACTTTAGGGAGATAA-AGTTTATAGCTTTAATTTGCTCTACTGCAACTTCAGAGAGA
1 CCACTGCAACTTTAGGGAGATAAGA-TTTATAACTTTAATTTGCTCTACTACAACTTCAGAGAAA
* * * * **
83698741 TAAGATTCGCTATCTTCAGTCTGCTCCACTACAATTTTA-GGAGATAAGATTTGTGGCTTTAATC
65 TAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTAACTTTAATC
*
83698805 TGTT
130 TGCT
83698809 CCACTGCAACTTTAGGGAGATAAGATTT
1 CCACTGCAACTTTAGGGAGATAAGATTT
83698837 GTCATGACGG
Statistics
Matches: 246, Mismatches: 41, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
132 76 0.31
133 52 0.21
134 6 0.02
136 2 0.01
138 5 0.02
139 27 0.11
140 78 0.32
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (133 bp):
CCACTGCAACTTTAGGGAGATAAGATTTATAACTTTAATTTGCTCTACTACAACTTCAGAGAAAT
AAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTAACTTTAATCT
GCT
Found at i:83698950 original size:58 final size:58
Alignment explanation
Indices: 83698857--83698973 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
83698847 CTTTAATCCA
83698857 TCCCACTGTAACTTCAGGGGTATAGGATTTATTGTTTCACTGATCTGTTACACTGTTC
1 TCCCACTGTAACTTCAGGGGTATAGGATTTATTGTTTCACTGATCTGTTACACTGTTC
* *
83698915 TCCCACTGTAACTTCAGGGGTATAGGATTTGTTGTTTCACTGATTTGTTACACTGTTC
1 TCCCACTGTAACTTCAGGGGTATAGGATTTATTGTTTCACTGATCTGTTACACTGTTC
83698973 T
1 T
83698974 TTGGGGAATA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41
Consensus pattern (58 bp):
TCCCACTGTAACTTCAGGGGTATAGGATTTATTGTTTCACTGATCTGTTACACTGTTC
Found at i:83704612 original size:44 final size:44
Alignment explanation
Indices: 83704540--83704683 Score: 175
Period size: 44 Copynumber: 3.3 Consensus size: 44
83704530 TTATTCTAAC
* * * *
83704540 CCACTGCAAGTTCAGAG-GTATAAGATTTGTTGCTTCAATCTGCT
1 CCACTACAACTTCAGAGAG-ATAAGATTTGTAGCTCCAATCTGCT
83704584 CCACTACAACTTCAGAGAGAT-AGAATTTGTAGCTCCAATCTGCT
1 CCACTACAACTTCAGAGAGATAAG-ATTTGTAGCTCCAATCTGCT
* ** * *
83704628 TCACTGTAACTTCAGGGAGATAAGATTTGTAGCTCCAATATGCT
1 CCACTACAACTTCAGAGAGATAAGATTTGTAGCTCCAATCTGCT
83704672 CCACTACAACTT
1 CCACTACAACTT
83704684 TGGGGATATA
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
43 2 0.02
44 80 0.94
45 3 0.04
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (44 bp):
CCACTACAACTTCAGAGAGATAAGATTTGTAGCTCCAATCTGCT
Found at i:83704674 original size:88 final size:89
Alignment explanation
Indices: 83704559--83704747 Score: 238
Period size: 88 Copynumber: 2.1 Consensus size: 89
83704549 GTTCAGAGGT
* * *
83704559 ATAAGATTTGTTGCTTCAATCTGCTCCACTACAACTTCAGAGAGATAGA-ATTTG-TAGCTCCAA
1 ATAAGATTTGTAGCTCCAATATGCTCCACTACAACTTCAGAGAGATA-ATATTTGCTAGCTCCAA
* *
83704622 TCTGCTTCACTGTAACTTCAGGGAG
65 TCTACTTCACTGGAACTTCAGGGAG
** * * * * *
83704647 ATAAGATTTGTAGCTCCAATATGCTCCACTACAACTTTGGGGATATAATATTTGCTATCTTCGAT
1 ATAAGATTTGTAGCTCCAATATGCTCCACTACAACTTCAGAGAGATAATATTTGCTAGCTCCAAT
*
83704712 CTACTTTACTGGAACTTCAGGGAG
66 CTACTTCACTGGAACTTCAGGGAG
83704736 ATAAGATTTGTA
1 ATAAGATTTGTA
83704748 CTTTGTAGTT
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
87 1 0.01
88 45 0.52
89 40 0.47
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (89 bp):
ATAAGATTTGTAGCTCCAATATGCTCCACTACAACTTCAGAGAGATAATATTTGCTAGCTCCAAT
CTACTTCACTGGAACTTCAGGGAG
Found at i:83704700 original size:44 final size:44
Alignment explanation
Indices: 83704559--83704971 Score: 211
Period size: 44 Copynumber: 9.2 Consensus size: 44
83704549 GTTCAGAGGT
* * *
83704559 ATAAGATTTGTTGCTTCAATCTGCTCCACTACAACTTCAGAGAG
1 ATAAGATTTGTAGCTCCAATCTGCTCCACTACAACTTCAGGGAG
* **
83704603 AT-AGAATTTGTAGCTCCAATCTGCTTCACTGTAACTTCAGGGAG
1 ATAAG-ATTTGTAGCTCCAATCTGCTCCACTACAACTTCAGGGAG
* ** *
83704647 ATAAGATTTGTAGCTCCAATATGCTCCACTACAACTTTGGGGAT
1 ATAAGATTTGTAGCTCCAATCTGCTCCACTACAACTTCAGGGAG
* * * * * ** **
83704691 ATAATATTTGCTATCTTCGATCTACTTTACTGGAACTTCAGGGAG
1 ATAAGATTTG-TAGCTCCAATCTGCTCCACTACAACTTCAGGGAG
* ** * * * *
83704736 ATAAGATTTGTACTTTGTAGTTTTAATTTGTTTCACTACCACTTCAGGGAG
1 AT-A-A---G-A-TTTGTAGCTCCAATCTGCTCCACTACAACTTCAGGGAG
* * * * * * * *
83704787 ATAAGACTTGTAACTTCAACCTACCCCACTGCAACTTCAAGGAG
1 ATAAGATTTGTAGCTCCAATCTGCTCCACTACAACTTCAGGGAG
* * ** ** ** *
83704831 ATAAGGTTTATAGCTTTAATCTGCTTTACTGTAACATT-AGAGAG
1 ATAAGATTTGTAGCTCCAATCTGCTCCACTACAAC-TTCAGGGAG
* * * * *
83704875 ATAAGATTTG-ATGTCTTCAGTTTGCTCCACTTCAACTTCAGGAAG
1 ATAAGATTTGTA-G-CTCCAATCTGCTCCACTACAACTTCAGGGAG
* * ** * *
83704920 ATAAGACTTGTGGCTTTAATCTGCTCCACTGCAACTTTAGGGAG
1 ATAAGATTTGTAGCTCCAATCTGCTCCACTACAACTTCAGGGAG
83704964 ATAAGATT
1 ATAAGATT
83704972 CGCCAGATGG
Statistics
Matches: 270, Mismatches: 84, Indels: 30
0.70 0.22 0.08
Matches are distributed among these distances:
43 3 0.01
44 174 0.64
45 58 0.21
46 2 0.01
47 1 0.00
49 1 0.00
50 1 0.00
51 26 0.10
52 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (44 bp):
ATAAGATTTGTAGCTCCAATCTGCTCCACTACAACTTCAGGGAG
Found at i:83707001 original size:37 final size:37
Alignment explanation
Indices: 83706951--83707024 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
83706941 TGCTCAAATT
83706951 TTATGTCTTGAATAAAGACCCCAATTTTCGATCTATC
1 TTATGTCTTGAATAAAGACCCCAATTTTCGATCTATC
*
83706988 TTATGTCTTGAATAAAGACCCCAATTTTTGATCTATC
1 TTATGTCTTGAATAAAGACCCCAATTTTCGATCTATC
83707025 CATAGAACTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (37 bp):
TTATGTCTTGAATAAAGACCCCAATTTTCGATCTATC
Found at i:83712377 original size:14 final size:15
Alignment explanation
Indices: 83712343--83712382 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
83712333 TAAAACATTT
83712343 TTTTATA-TATAAAGG
1 TTTTATATTATAAA-G
83712358 TTTTATATTATAAA-
1 TTTTATATTATAAAG
83712372 TTTTATATTAT
1 TTTTATATTAT
83712383 TTTTACTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 11 0.46
15 7 0.29
16 6 0.25
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
TTTTATATTATAAAG
Found at i:83717767 original size:17 final size:18
Alignment explanation
Indices: 83717745--83717779 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
83717735 ATAATTGTAA
*
83717745 TTTAAAT-TTTAATTATT
1 TTTAAATGTGTAATTATT
83717762 TTTAAATGTGTAATTATT
1 TTTAAATGTGTAATTATT
83717780 ATAACTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTAAATGTGTAATTATT
Found at i:83717830 original size:44 final size:44
Alignment explanation
Indices: 83717746--83717835 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
83717736 TAATTGTAAT
* * * *
83717746 TTAAATTTTAATTATTTTTAAATGTGTAATTATTATAACTTCTA
1 TTAAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTA
*
83717790 TTAAATTATAATTATTTTTAAATGTATAATTATCACAACTTTTA
1 TTAAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTA
83717834 TT
1 TT
83717836 TTAATTCAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (44 bp):
TTAAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTA
Found at i:83719914 original size:15 final size:16
Alignment explanation
Indices: 83719894--83719936 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
83719884 AATTGATAAA
*
83719894 TTATTTAATTAAA-AT
1 TTATTTAATTAAATAG
*
83719909 TTATTTAACTAAATAG
1 TTATTTAATTAAATAG
*
83719925 TTATTTATTTAA
1 TTATTTAATTAA
83719937 TAGACAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (16 bp):
TTATTTAATTAAATAG
Found at i:83719959 original size:21 final size:20
Alignment explanation
Indices: 83719935--83719977 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
83719925 TTATTTATTT
* *
83719935 AATAGACAATTAAATTTTAAA
1 AATAAACAAATAAA-TTTAAA
*
83719956 AATAAATAAATAAATTTAAA
1 AATAAACAAATAAATTTAAA
83719976 AA
1 AA
83719978 GCACCATTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (20 bp):
AATAAACAAATAAATTTAAA
Found at i:83721492 original size:21 final size:20
Alignment explanation
Indices: 83721438--83721492 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 20
83721428 GTTTTCTGGT
83721438 AAAATATTTAAAAAATTATA
1 AAAATATTTAAAAAATTATA
* *
83721458 ATTAATATAATTAAAATATGTATA
1 A--AA-ATATTTAAAAAAT-TATA
83721482 AAAATATTTAA
1 AAAATATTTAA
83721493 TATTAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
20 1 0.04
21 7 0.25
22 4 0.14
23 11 0.39
24 5 0.18
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
AAAATATTTAAAAAATTATA
Found at i:83721509 original size:25 final size:27
Alignment explanation
Indices: 83721481--83721546 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
83721471 AAATATGTAT
83721481 AAAAATATTTAATATTA-AA-AAATAAA
1 AAAAATATTTAAT-TTAGAAGAAATAAA
83721507 AAAAATATTT-ATTTAGAAGAAAT-AA
1 AAAAATATTTAATTTAGAAGAAATAAA
* *
83721532 AATAATATCTAATTT
1 AAAAATATTTAATTT
83721547 TTAGTAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 3 0.09
25 14 0.40
26 18 0.51
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.35
Consensus pattern (27 bp):
AAAAATATTTAATTTAGAAGAAATAAA
Found at i:83722526 original size:15 final size:15
Alignment explanation
Indices: 83722506--83722589 Score: 73
Period size: 15 Copynumber: 5.6 Consensus size: 15
83722496 TAACTTTCCA
83722506 ATATTTGATACCCAT
1 ATATTTGATACCCAT
**
83722521 ATATTTGACTTTCCA-
1 ATATTTGA-TACCCAT
83722536 ATATTTGATACCCAT
1 ATATTTGATACCCAT
* **
83722551 ATCTTTGACTTTCCAT
1 ATATTTGA-TACCCAT
*
83722567 -TATTTGATACACAT
1 ATATTTGATACCCAT
*
83722581 ATCTTTGAT
1 ATATTTGAT
83722590 TTTCCATAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
14 8 0.15
15 36 0.68
16 9 0.17
ACGTcount: A:0.29, C:0.19, G:0.07, T:0.45
Consensus pattern (15 bp):
ATATTTGATACCCAT
Found at i:83722596 original size:30 final size:30
Alignment explanation
Indices: 83722472--83722595 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
83722462 TTTTATTATG
* *
83722472 CCAATATCTCGATACCCATATCTTTAACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
*
83722503 CCAATATTTGATACCCATATATTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
83722533 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
83722563 CCATTATTTGATACACATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
83722593 CCA
1 CCA
83722596 TAAATATGGA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 79 0.92
31 7 0.08
ACGTcount: A:0.28, C:0.23, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:83727228 original size:15 final size:15
Alignment explanation
Indices: 83727180--83727259 Score: 56
Period size: 15 Copynumber: 5.3 Consensus size: 15
83727170 TACCCATATC
83727180 TTTGACTTTCCAATA
1 TTTGACTTTCCAATA
** * *
83727195 TTTGA-TACCCTTATC
1 TTTGACTTTCC-AATA
83727210 TTTGACTTTCCAATA
1 TTTGACTTTCCAATA
** *
83727225 TTTGA-TACCCATATC
1 TTTGACTTTCCA-ATA
*
83727240 TTTGACTTTCCATTA
1 TTTGACTTTCCAATA
83727255 TTTGA
1 TTTGA
83727260 TACACATATC
Statistics
Matches: 46, Mismatches: 15, Indels: 8
0.67 0.22 0.12
Matches are distributed among these distances:
14 7 0.15
15 32 0.70
16 7 0.15
ACGTcount: A:0.24, C:0.21, G:0.07, T:0.47
Consensus pattern (15 bp):
TTTGACTTTCCAATA
Found at i:83727282 original size:30 final size:30
Alignment explanation
Indices: 83727158--83727281 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
83727148 TTTTATTATG
*
83727158 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
*
83727189 CCAATATTTGATACCCTTATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
83727219 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
83727249 CCATTATTTGATACACATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
83727279 CCA
1 CCA
83727282 TAAATATGGA
Statistics
Matches: 87, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 80 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:83731955 original size:3 final size:3
Alignment explanation
Indices: 83731947--83732022 Score: 152
Period size: 3 Copynumber: 25.3 Consensus size: 3
83731937 TGGCAATTTG
83731947 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
83731995 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
83732023 ACAAACTCAA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:83735331 original size:77 final size:77
Alignment explanation
Indices: 83735244--83735395 Score: 252
Period size: 77 Copynumber: 2.0 Consensus size: 77
83735234 TAGGAGAGTG
* * *
83735244 CTAGCTTCATGCTACACTCTATGGGTGC-GATATAGGCTCTATGAGTCAAGTACGGGGTAATGGA
1 CTAGCTTCATGCTACACTCTATGGGT-CTGATAGAGGCTCTATAAGCCAAGTACGGGGTAATGGA
83735308 GATCCTTTCACTA
65 GATCCTTTCACTA
*
83735321 CTAGCTTCATGCTACACTTTATGGGTCTGATAGAGGCTCTATAAGCCAAGTACGGGGTAATGGAG
1 CTAGCTTCATGCTACACTCTATGGGTCTGATAGAGGCTCTATAAGCCAAGTACGGGGTAATGGAG
83735386 ATCCTTTCAC
66 ATCCTTTCAC
83735396 AAGTAGCCAA
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
76 1 0.01
77 69 0.99
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (77 bp):
CTAGCTTCATGCTACACTCTATGGGTCTGATAGAGGCTCTATAAGCCAAGTACGGGGTAATGGAG
ATCCTTTCACTA
Found at i:83735958 original size:18 final size:18
Alignment explanation
Indices: 83735894--83735959 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
83735884 GTGTAAATGA
*
83735894 ATAGGCTCACATAAGT-T
1 ATAGGCTCGCATAAGTGT
*
83735911 CATAGGCTCGCACAAGTGT
1 -ATAGGCTCGCATAAGTGT
* *
83735930 TTAAGCTCGCATAAGTGT
1 ATAGGCTCGCATAAGTGT
*
83735948 ATAGGCACGCAT
1 ATAGGCTCGCAT
83735960 GATACTGGGT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
18 38 0.97
19 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (18 bp):
ATAGGCTCGCATAAGTGT
Found at i:83738030 original size:16 final size:16
Alignment explanation
Indices: 83738005--83738038 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
83737995 ATGAATATAT
* *
83738005 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
83738021 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
83738037 AT
1 AT
83738039 TGGATATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:83740083 original size:70 final size:70
Alignment explanation
Indices: 83740007--83740139 Score: 232
Period size: 70 Copynumber: 1.9 Consensus size: 70
83739997 AACTAAGGTA
* *
83740007 AGAAAAAAACTAATTTGTTC-TTTTTTTTACTTTTTATTTCGACAAATATAAGAAAATAAAATAG
1 AGAAAAAAACTAATTTGTTCTTTTTTTTTACTTTTTATTTCAAAAAATATAAGAAAATAAAATAG
83740071 ATTTT
66 ATTTT
*
83740076 AGAAAAAAACTAATTTGTTCTTTTTTTTTACTTTTTATTTTAAAAAATATAAGAAAATAAAATA
1 AGAAAAAAACTAATTTGTTCTTTTTTTTTACTTTTTATTTCAAAAAATATAAGAAAATAAAATA
83740140 AGGTTTTAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
69 20 0.33
70 40 0.67
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (70 bp):
AGAAAAAAACTAATTTGTTCTTTTTTTTTACTTTTTATTTCAAAAAATATAAGAAAATAAAATAG
ATTTT
Found at i:83740452 original size:2 final size:2
Alignment explanation
Indices: 83740445--83740473 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
83740435 GAGAGGTCTT
83740445 GA GA GA GA -A GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
83740474 ATGTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:83745857 original size:41 final size:41
Alignment explanation
Indices: 83745811--83745916 Score: 149
Period size: 41 Copynumber: 2.6 Consensus size: 41
83745801 TCCACAGTCA
*
83745811 TCAAGCAACCATGCGATCCTTAATCGGTGGATCCACGATCG
1 TCAAGCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
* * * *
83745852 TCAAGCAACCATGCAATCCTCAATCGGTGGATCCATGGTTG
1 TCAAGCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
* *
83745893 TCAAGCACCCATGTGATCCTCAAT
1 TCAAGCAACCATGCGATCCTCAAT
83745917 TTCTTCCTCC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (41 bp):
TCAAGCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
Found at i:83746173 original size:27 final size:26
Alignment explanation
Indices: 83746143--83746436 Score: 110
Period size: 27 Copynumber: 10.9 Consensus size: 26
83746133 GGTAAATCTA
83746143 CAAACTAAGGGTATTTCGGTAATTTTG
1 CAAA-TAAGGGTATTTCGGTAATTTTG
* * * *
83746170 CAAACCAATGGTATTTCTGTAATTTTT
1 CAAA-TAAGGGTATTTCGGTAATTTTG
* * ***
83746197 AAAAGTCACGGGTATTTTTATAATTTTG
1 CAAA-T-AAGGGTATTTCGGTAATTTTG
* * **
83746225 TAAATCAGGGGTATTTTTGTAATTTT-
1 CAAAT-AAGGGTATTTCGGTAATTTTG
** *
83746251 CTAAATCAAGGGTATTTCAATAATTTTC
1 C-AAAT-AAGGGTATTTCGGTAATTTTG
* *
83746279 CAAATTAGGGGTATATT-GGTAATTTTA
1 CAAA-TAAGGGTAT-TTCGGTAATTTTG
**
83746306 CAAATTGAA-GGTATTTCGGTAATTTCA
1 CAAA-T-AAGGGTATTTCGGTAATTTTG
* * *
83746333 CAAATCAGGGGTATTTTGGTAACTTTG
1 CAAAT-AAGGGTATTTCGGTAATTTTG
* ** *
83746360 CTAATCGGAGGTATTTTGGTAATTTTG
1 CAAATAAG-GGTATTTCGGTAATTTTG
* * * **
83746387 TAAACCAATGGTA-TTCATTAATTTTG
1 CAAA-TAAGGGTATTTCGGTAATTTTG
* * *
83746413 TAAACCAAGGGTATTTCAGTAATT
1 CAAA-TAAGGGTATTTCGGTAATT
83746437 CTATCCTACA
Statistics
Matches: 210, Mismatches: 46, Indels: 22
0.76 0.17 0.08
Matches are distributed among these distances:
26 28 0.13
27 158 0.75
28 24 0.11
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (26 bp):
CAAATAAGGGTATTTCGGTAATTTTG
Found at i:83746211 original size:28 final size:27
Alignment explanation
Indices: 83746149--83746292 Score: 112
Period size: 27 Copynumber: 5.3 Consensus size: 27
83746139 TCTACAAACT
** *
83746149 AAGGGTATTTCGGTAATTTTGC-AAACC
1 AAGGGTATTTCTATAATTTT-CTAAATC
* *
83746176 AATGGTATTTCTGTAATTTT-TAAAAGTC
1 AAGGGTATTTCTATAATTTTCT-AAA-TC
* * *
83746204 ACGGGTATTTTTATAATTTTGTAAATC
1 AAGGGTATTTCTATAATTTTCTAAATC
* * *
83746231 AGGGGTATTTTTGTAATTTTCTAAATC
1 AAGGGTATTTCTATAATTTTCTAAATC
* * *
83746258 AAGGGTATTTCAATAATTTTCCAAATT
1 AAGGGTATTTCTATAATTTTCTAAATC
*
83746285 AGGGGTAT
1 AAGGGTAT
83746293 ATTGGTAATT
Statistics
Matches: 96, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
27 75 0.78
28 20 0.21
29 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTCTATAATTTTCTAAATC
Found at i:83746221 original size:55 final size:54
Alignment explanation
Indices: 83746149--83746436 Score: 144
Period size: 54 Copynumber: 5.3 Consensus size: 54
83746139 TCTACAAACT
** *
83746149 AAGGGTATTTCGGTAATTTTGCAAACCAATGGTATTTCTGTAATTTT-TAAAAGTC
1 AAGGGTATTTCAATAATTTTGCAAACCAAGGGTATTTCTGTAATTTTCT-AAA-TC
* ** * * * *
83746204 ACGGGTATTTTTATAATTTTGTAAATCAGGGGTATTTTTGTAATTTTCTAAATC
1 AAGGGTATTTCAATAATTTTGCAAACCAAGGGTATTTCTGTAATTTTCTAAATC
* ** * * *
83746258 AAGGGTATTTCAATAATTTTCCAAATTAGGGGTATATT-GGTAATTTTAC-AAATTG
1 AAGGGTATTTCAATAATTTTGCAAACCAAGGGTAT-TTCTGTAATTTT-CTAAA-TC
** ** * * *
83746313 AA-GGTATTTCGGTAATTTCACAAATCAGGGGTATTT-TGGTAACTTTGCT-AATC
1 AAGGGTATTTCAATAATTTTGCAAACCAAGGGTATTTCT-GTAA-TTTTCTAAATC
* *** * * * *
83746366 -GGAGGTATTTTGGTAATTTTGTAAACCAATGGTA-TTCAT-TAATTTTGTAAACC
1 AAG-GGTATTTCAATAATTTTGCAAACCAAGGGTATTTC-TGTAATTTTCTAAATC
*
83746419 AAGGGTATTTCAGTAATT
1 AAGGGTATTTCAATAATT
83746437 CTATCCTACA
Statistics
Matches: 181, Mismatches: 39, Indels: 28
0.73 0.16 0.11
Matches are distributed among these distances:
52 4 0.02
53 24 0.13
54 101 0.56
55 51 0.28
56 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
AAGGGTATTTCAATAATTTTGCAAACCAAGGGTATTTCTGTAATTTTCTAAATC
Found at i:83746289 original size:54 final size:55
Alignment explanation
Indices: 83746149--83746363 Score: 172
Period size: 54 Copynumber: 3.9 Consensus size: 55
83746139 TCTACAAACT
** * * **
83746149 AAGGGTATTTCGGTAATTTTGCAAACCAATGGTATTTCT-GTAATTTT-TAAAAGTC
1 AAGGGTATTTCAATAATTTTCCAAATCAGGGGTATTT-TGGTAATTTTCT-AAAGTC
* ** ** *
83746204 ACGGGTATTTTTATAATTTTGTAAATCAGGGGTATTTTTGTAATTTTCTAAA-TC
1 AAGGGTATTTCAATAATTTTCCAAATCAGGGGTATTTTGGTAATTTTCTAAAGTC
* * * *
83746258 AAGGGTATTTCAATAATTTTCCAAATTAGGGGTATATTGGTAATTTTAC-AAATTG
1 AAGGGTATTTCAATAATTTTCCAAATCAGGGGTATTTTGGTAATTTT-CTAAAGTC
** *
83746313 AA-GGTATTTCGGTAA-TTTCACAAATCAGGGGTATTTTGGTAACTTTGCTAA
1 AAGGGTATTTCAATAATTTTC-CAAATCAGGGGTATTTTGGTAA-TTTTCTAA
83746364 TCGGAGGTAT
Statistics
Matches: 131, Mismatches: 22, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
53 4 0.03
54 77 0.59
55 49 0.37
56 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (55 bp):
AAGGGTATTTCAATAATTTTCCAAATCAGGGGTATTTTGGTAATTTTCTAAAGTC
Found at i:83746372 original size:54 final size:52
Alignment explanation
Indices: 83746226--83746384 Score: 158
Period size: 54 Copynumber: 3.0 Consensus size: 52
83746216 ATAATTTTGT
* * **
83746226 AAATCAGGGGTATTTTTGTAATTTTCTAAATC-AAGGGTATTTCAATAATTTTCC
1 AAATCAGGGGTATTTTGGTAATTTACT-AATCGAA-GGTATTTCGGTAA-TTTCC
* * * *
83746280 AAATTAGGGGTATATTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCAC
1 AAATCAGGGGTATTTTGGTAA-TTTACTAATCGAAGGTATTTCGGTAATTTC-C
* * *
83746334 AAATCAGGGGTATTTTGGTAACTTTGCTAATCGGAGGTATTTTGGTAATTT
1 AAATCAGGGGTATTTTGGTAA-TTTACTAATCGAAGGTATTTCGGTAATTT
83746385 TGTAAACCAA
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
53 4 0.05
54 76 0.88
55 6 0.07
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (52 bp):
AAATCAGGGGTATTTTGGTAATTTACTAATCGAAGGTATTTCGGTAATTTCC
Found at i:83746413 original size:26 final size:27
Alignment explanation
Indices: 83746369--83746436 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 27
83746359 GCTAATCGGA
** *
83746369 GGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTCAGTAATTTTGTAAACCAAG
*
83746396 GGTA-TTCATTAATTTTGTAAACCAAG
1 GGTATTTCAGTAATTTTGTAAACCAAG
83746422 GGTATTTCAGTAATT
1 GGTATTTCAGTAATT
83746437 CTATCCTACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 22 0.63
27 13 0.37
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.43
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAACCAAG
Found at i:83746455 original size:27 final size:27
Alignment explanation
Indices: 83746425--83746501 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
83746415 AACCAAGGGT
*
83746425 ATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
83746452 ATTTTAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* * *
83746479 ATTTCAATAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
83746502 ATATGAGATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:83749533 original size:41 final size:41
Alignment explanation
Indices: 83749474--83749555 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
83749464 TAAAAGCCAC
*
83749474 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
83749515 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
83749556 TTCTTCCTCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.20
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
Found at i:83749862 original size:27 final size:25
Alignment explanation
Indices: 83749820--83750081 Score: 146
Period size: 27 Copynumber: 9.8 Consensus size: 25
83749810 TCTACAAACC
*
83749820 AAGGGTATTTCGGTAATTTTACAAACT
1 AAGGGTA-TTCTGTAATTTTACAAA-T
* *
83749847 AATGGTATATCTGTAATTTTATAAATT
1 AAGGGTAT-TCTGTAATTTTACAAA-T
* * *
83749874 AGGGGTATTTCTATAATTTTCCAAAT
1 AAGGGTA-TTCTGTAATTTTACAAAT
* *
83749900 CAAGGGTATTTTGGTAATTTTCCAAAT
1 -AAGGGTATTCT-GTAATTTTACAAAT
* *
83749927 TAGAGGTATTTTGGTAATTTTACAAAT
1 AAG-GGTATTCT-GTAATTTTACAAAT
* * * *
83749954 CGATGGTATTTCGGTAATTTCACAAAT
1 -AAGGGTA-TTCTGTAATTTTACAAAT
*
83749981 AATGGGTATTTTGGTAATTTTACAAACT
1 AA-GGGTATTCT-GTAATTTTACAAA-T
* * *
83750009 AGGGGTATTTTGGTAATTTTACTAAT
1 AAGGGTATTCT-GTAATTTTACAAAT
* * ** *
83750035 CGAGGGTATTTTGGTAATTTTGTAAACC
1 -AAGGGTATTCT-GTAATTTTACAAA-T
*
83750063 AAGGGTATTCAGTAATTTT
1 AAGGGTATTCTGTAATTTT
83750082 GTAAACCAAG
Statistics
Matches: 188, Mismatches: 35, Indels: 25
0.76 0.14 0.10
Matches are distributed among these distances:
26 19 0.10
27 163 0.87
28 6 0.03
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (25 bp):
AAGGGTATTCTGTAATTTTACAAAT
Found at i:83749908 original size:54 final size:53
Alignment explanation
Indices: 83749822--83750081 Score: 181
Period size: 54 Copynumber: 4.8 Consensus size: 53
83749812 TACAAACCAA
* *
83749822 GGGTATTTCGGTAATTTTACAAA-CTAATGGTATATCTGTAATTTTATAAATTAG
1 GGGTATTTCTGTAATTTTACAAATC-AATGGTAT-TCTGTAATTTTACAAATTAG
* * * * *
83749876 GGGTATTTCTATAATTTTCCAAATCAAGGGTATTTTGGTAATTTTCCAAATTAG
1 GGGTATTTCTGTAATTTTACAAATCAATGGTATTCT-GTAATTTTACAAATTAG
* * * * * *
83749930 AGGTATTT-TGGTAATTTTACAAATCGATGGTATTTCGGTAATTTCACAAATAAT
1 GGGTATTTCT-GTAATTTTACAAATCAATGGTA-TTCTGTAATTTTACAAATTAG
** * * *
83749984 GGGTATTT-TGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACTAA-TCG
1 GGGTATTTCT-GTAATTTTACAAATC-AATGGTATTCT-GTAATTTTACAAATTAG
** * * *
83750037 AGGGTATTT-TGGTAATTTTGTAAACCAAGGGTATTCAGTAATTTT
1 -GGGTATTTCT-GTAATTTTACAAATCAATGGTATTCTGTAATTTT
83750082 GTAAACCAAG
Statistics
Matches: 164, Mismatches: 34, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
53 14 0.09
54 146 0.89
55 4 0.02
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.42
Consensus pattern (53 bp):
GGGTATTTCTGTAATTTTACAAATCAATGGTATTCTGTAATTTTACAAATTAG
Found at i:83749962 original size:81 final size:81
Alignment explanation
Indices: 83749814--83750071 Score: 285
Period size: 81 Copynumber: 3.2 Consensus size: 81
83749804 GGTAAATCTA
* * * *
83749814 CAAACCAAGGGTATTTCGGTAATTTTACAAACTA-ATGGTATATCT-GTAATTTTATAAAT-TAG
1 CAAACCAAGGGTATTTTGGTAATTTTACAAACTAGA-GGTAT-TTTGGTAATTTTACAAATCGA-
*
83749876 GGGTATTTCTATAATTTTC
63 GGGTATTTCTGTAATTTTC
* * * *
83749895 CAAATCAAGGGTATTTTGGTAATTTTCCAAATTAGAGGTATTTTGGTAATTTTACAAATCGATGG
1 CAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAATCGAGGG
*
83749960 TATTTCGGTAA-TTTC
66 TATTTCTGTAATTTTC
* * *
83749975 ACAAA-TAATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTAATCGAG
1 -CAAACCAA-GGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAATCGAG
*
83750039 GGTATTT-TGGTAATTTTG
64 GGTATTTCT-GTAATTTTC
*
83750057 TAAACCAAGGGTATT
1 CAAACCAAGGGTATT
83750072 CAGTAATTTT
Statistics
Matches: 149, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
80 8 0.05
81 134 0.90
82 7 0.05
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (81 bp):
CAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAATCGAGGG
TATTTCTGTAATTTTC
Found at i:83750082 original size:26 final size:27
Alignment explanation
Indices: 83750037--83750106 Score: 115
Period size: 26 Copynumber: 2.6 Consensus size: 27
83750027 TTACTAATCG
**
83750037 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAATTTTGTAAACCA
83750064 AGGGTA-TTCAGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAATTTTGTAAACCA
83750090 AGGGTATTTCAGTAATT
1 AGGGTATTTCAGTAATT
83750107 CTACCCTACA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 24 0.60
27 16 0.40
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTGTAAACCA
Found at i:83750125 original size:27 final size:27
Alignment explanation
Indices: 83750095--83750171 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
83750085 AACCAAGGGT
83750095 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
83750122 ATTTTAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
83750149 ATTTCAGTAATACTATCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
83750172 ATATGAGATT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:83752022 original size:21 final size:21
Alignment explanation
Indices: 83751996--83752040 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
83751986 TGTGGAAAAT
*
83751996 ATTTTGTTATAAAGTGATGTC
1 ATTTTGTTATAAAGTGATGCC
83752017 ATTTTGTTATAAAGTGATGCC
1 ATTTTGTTATAAAGTGATGCC
83752038 ATT
1 ATT
83752041 CGCTAAATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.47
Consensus pattern (21 bp):
ATTTTGTTATAAAGTGATGCC
Found at i:83754694 original size:28 final size:28
Alignment explanation
Indices: 83754651--83754794 Score: 229
Period size: 28 Copynumber: 5.2 Consensus size: 28
83754641 AGCATGGCTT
* * *
83754651 CCAG-AACAAATA-TTGTGACAGAGTCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
* *
83754677 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
83754705 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
83754733 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
83754761 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
83754789 CCAGAA
1 CCAGAA
83754795 CGCTTCCTCC
Statistics
Matches: 110, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 4 0.04
27 6 0.05
28 100 0.91
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.17
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:83756068 original size:26 final size:25
Alignment explanation
Indices: 83756018--83756081 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 25
83756008 AGATTCAGCT
83756018 ATAGAGGAAAAGAAGAAGAAGAGAAA
1 ATAGA-GAAAAGAAGAAGAAGAGAAA
*
83756044 ATAGATGAAAAGAGGAGAA-AA-AGAAG
1 ATAGA-GAAAAGA--AGAAGAAGAGAAA
83756070 A-AGAGAAAAGAA
1 ATAGAGAAAAGAA
83756082 TTGTCAGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
22 1 0.03
24 7 0.21
25 3 0.09
26 17 0.50
27 2 0.06
28 4 0.12
ACGTcount: A:0.66, C:0.00, G:0.30, T:0.05
Consensus pattern (25 bp):
ATAGAGAAAAGAAGAAGAAGAGAAA
Found at i:83758927 original size:25 final size:25
Alignment explanation
Indices: 83758882--83758943 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
83758872 CCACAGCTCA
83758882 TATGAGCTTACCAATCCTCAGCTTG
1 TATGAGCTTACCAATCCTCAGCTTG
*
83758907 TATGAGCTTACCATAT-TTCAGCTTG
1 TATGAGCTTACCA-ATCCTCAGCTTG
* *
83758932 GAGGAGCTTACC
1 TATGAGCTTACC
83758944 GATTTTGGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 31 0.94
26 2 0.06
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.32
Consensus pattern (25 bp):
TATGAGCTTACCAATCCTCAGCTTG
Found at i:83761531 original size:46 final size:46
Alignment explanation
Indices: 83761308--83761534 Score: 280
Period size: 46 Copynumber: 5.0 Consensus size: 46
83761298 TTATCTTTGA
* * * * * *
83761308 CATGATGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
* *
83761354 CATGTTGCCATGGTATCTTTCAA-TATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
83761399 C-TCGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CAT-GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * **
83761445 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* **
83761491 CATGTTGCCATCGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
83761535 TTTAGAAAGC
Statistics
Matches: 158, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
44 5 0.03
45 35 0.22
46 118 0.75
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:83763358 original size:11 final size:11
Alignment explanation
Indices: 83763342--83763389 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
83763332 CTTTATATAC
83763342 TAATAAAATAA
1 TAATAAAATAA
*
83763353 TAATAAAATATCT
1 TAATAAAATA--A
* *
83763366 TATTAAAATAT
1 TAATAAAATAA
83763377 TAATAAAATAA
1 TAATAAAATAA
83763388 TA
1 TA
83763390 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:83766231 original size:21 final size:21
Alignment explanation
Indices: 83766188--83766235 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
83766178 ACAGCCTGAA
* *
83766188 ACACGAGCGTGTCCCATTACC
1 ACACGGGCGTGTCCCATGACC
* *
83766209 ACACGGGCGTGTCCCCTGGCC
1 ACACGGGCGTGTCCCATGACC
83766230 ACACGG
1 ACACGG
83766236 ACATGTAACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.40, G:0.27, T:0.15
Consensus pattern (21 bp):
ACACGGGCGTGTCCCATGACC
Found at i:83767417 original size:31 final size:31
Alignment explanation
Indices: 83767379--83767440 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
83767369 TAAGGTTTCG
83767379 GTAGTTAATTGGGTAAAAAGGACTAAATTGA
1 GTAGTTAATTGGGTAAAAAGGACTAAATTGA
83767410 GTAGTTAATTGGGTAAAAAGGACTAAATTGA
1 GTAGTTAATTGGGTAAAAAGGACTAAATTGA
83767441 ATTAAGTGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.03, G:0.26, T:0.29
Consensus pattern (31 bp):
GTAGTTAATTGGGTAAAAAGGACTAAATTGA
Found at i:83780118 original size:10 final size:10
Alignment explanation
Indices: 83780103--83780133 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
83780093 AAATATCTAG
83780103 ATTTCTCTTC
1 ATTTCTCTTC
83780113 ATTTCTCTTC
1 ATTTCTCTTC
83780123 ATTTCTCTTC
1 ATTTCTCTTC
83780133 A
1 A
83780134 ATTCCAGCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.13, C:0.29, G:0.00, T:0.58
Consensus pattern (10 bp):
ATTTCTCTTC
Found at i:83782374 original size:23 final size:23
Alignment explanation
Indices: 83782348--83782392 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
83782338 TGGGTATGTG
*
83782348 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
83782371 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
83782393 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:83785035 original size:50 final size:47
Alignment explanation
Indices: 83784981--83785480 Score: 184
Period size: 50 Copynumber: 10.7 Consensus size: 47
83784971 TCCTATACTT
**
83784981 CTGAAGTTGCAGTGGGTCAGAATAAAACTACAATGGCGAATTTTATATCC
1 CTGAAGTTGCAGTGGGTCAGAATAAAACTACAAT---GAATCCTATATCC
* * * * *
83785031 CTGAAGTTGCAGT-GGACTAGATTGAAGCTACAAT---TCTTATA-CC
1 CTGAAGTTGCAGTGGGTC-AGAATAAAACTACAATGAATCCTATATCC
* ** *
83785074 CTAAAGTTATAGTAGGTCAGAATAAAACTACAACATTGAATCCTATATCC
1 CTGAAGTTGCAGTGGGTCAGAATAAAACTAC-A-A-TGAATCCTATATCC
* * * * *
83785124 CTGAAGTTACAGTGGATCAGATTGAAGCTACAAT---TCCTATA-CC
1 CTGAAGTTGCAGTGGGTCAGAATAAAACTACAATGAATCCTATATCC
* * *
83785167 CTTGAAGTTGCAATAGGTCAGAATAAAACTACAATGGTGAATCATATATCC
1 C-TGAAGTTGCAGTGGGTCAGAATAAAACTACAA---TGAATCCTATATCC
* * * * * *
83785218 CTGAAGTTACAGTGGATCGGATTAAAGCTACAAT---TCCTATACCC
1 CTGAAGTTGCAGTGGGTCAGAATAAAACTACAATGAATCCTATATCC
* * * * **
83785262 CTAAAGTT-CTAGTGGGTCGGAATGAAACTACAATGGCGAATCTTACCTCC
1 CTGAAGTTGC-AGTGGGTCAGAATAAAACTACAAT---GAATCCTATATCC
* * ** * * * *
83785312 CTGAAGTTGCAATAGAACA-AGAT-GAAGT--TATGATTCCTATA-CC
1 CTGAAGTTGCAGTGGGTCAGA-ATAAAACTACAATGAATCCTATATCC
* *
83785355 TCTAAAGTTGCAGTAGGTC-GAAATAAAAC-ACCAATAACGAATCCTATATCC
1 -CTGAAGTTGCAGTGGGTCAG-AATAAAACTA-CAAT---GAATCCTATATCC
* * * *
83785406 CTGAAGTTGCAGTGGATC-GAATTGAAGCTACAAT---TCCTATACCC
1 CTGAAGTTGCAGTGGGTCAGAA-TAAAACTACAATGAATCCTATATCC
* * * *
83785450 CTAAAGTTGTAGTGGGTCAGATTAAATCTAC
1 CTGAAGTTGCAGTGGGTCAGAATAAAACTAC
83785481 CATAGTGTAT
Statistics
Matches: 331, Mismatches: 79, Indels: 86
0.67 0.16 0.17
Matches are distributed among these distances:
43 28 0.08
44 130 0.39
45 6 0.02
46 1 0.00
47 7 0.02
48 1 0.00
49 16 0.05
50 135 0.41
51 7 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (47 bp):
CTGAAGTTGCAGTGGGTCAGAATAAAACTACAATGAATCCTATATCC
Found at i:83785199 original size:44 final size:43
Alignment explanation
Indices: 83785058--83785295 Score: 140
Period size: 44 Copynumber: 5.2 Consensus size: 43
83785048 TAGATTGAAG
* * *
83785058 CTACAATTCTTATACCCTAAAGTTATAGTAGGTCAGAATAAAA
1 CTACAATTCCTATACCCTGAAGTTACAGTAGGTCAGAATAAAA
* * *
83785101 CTACAACATTGAATCCTATATCCCTGAAGTTACAGT-GGATCAGATTGAAG
1 CTAC-A-A-T---TCCTATA-CCCTGAAGTTACAGTAGG-TCAGAATAAAA
* *
83785151 CTACAATTCCTATACCCTTGAAGTTGCAATAGGTCAGAATAAAA
1 CTACAATTCCTATACCC-TGAAGTTACAGTAGGTCAGAATAAAA
* * * *
83785195 CTACAATGGTGAATCATATATCCCTGAAGTTACAGT-GGATCGGATTAAAG
1 CTACAA---T---TCCTATA-CCCTGAAGTTACAGTAGG-TCAGAATAAAA
* * * *
83785245 CTACAATTCCTATACCCCTAAAGTT-CTAGTGGGTCGGAATGAAA
1 CTACAATTCCTATA-CCCTGAAGTTAC-AGTAGGTCAGAATAAAA
83785289 CTACAAT
1 CTACAAT
83785296 GGCGAATCTT
Statistics
Matches: 152, Mismatches: 23, Indels: 39
0.71 0.11 0.18
Matches are distributed among these distances:
43 8 0.05
44 65 0.43
45 5 0.03
46 1 0.01
47 3 0.02
48 1 0.01
49 11 0.07
50 55 0.36
51 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (43 bp):
CTACAATTCCTATACCCTGAAGTTACAGTAGGTCAGAATAAAA
Found at i:83785981 original size:50 final size:50
Alignment explanation
Indices: 83785827--83785982 Score: 168
Period size: 50 Copynumber: 3.2 Consensus size: 50
83785817 TATACCTTTA
* *
83785827 AAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAATCTTATCTCTCTG
1 AAGTTGCAGTGGGTCAGATTGAATATACCATAACGAATCTTATCTCTCTG
* * *
83785877 AAGTTGCAGTAGAG-CAAGA-TGAAGATA-C---A--AATCTTATAC-CCCTG
1 AAGTTGCAGT-GGGTC-AGATTGAATATACCATAACGAATCTTAT-CTCTCTG
83785921 AAGTTGCAGTGGGTCAGATTGAATATACCATAACGAATCTTATCTCTCTG
1 AAGTTGCAGTGGGTCAGATTGAATATACCATAACGAATCTTATCTCTCTG
*
83785971 AAGATGCAGTGG
1 AAGTTGCAGTGG
83785983 AGTAAGATGA
Statistics
Matches: 85, Mismatches: 9, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
43 5 0.06
44 30 0.35
45 2 0.02
46 1 0.01
48 1 0.01
49 2 0.02
50 40 0.47
51 4 0.05
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (50 bp):
AAGTTGCAGTGGGTCAGATTGAATATACCATAACGAATCTTATCTCTCTG
Found at i:83786037 original size:94 final size:93
Alignment explanation
Indices: 83784958--83786016 Score: 738
Period size: 94 Copynumber: 11.3 Consensus size: 93
83784948 GTAATAATCA
* * * * * * * * ** *
83784958 ATGAAGCTACAATTCCTATACTTCTGAAGTTGCAGTGGGTCAGAATAAAACTACAATGGCGAATT
1 ATGAAGCTACAAATCCTATAC-CCTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAATC
* * *
83785023 TTATATCCCTGAAGTTGCAGTGGA-CTAG
65 TTATCTCTCTGAAGTTGCAGTGGAGCAAG
* * ** * * * * * * * **
83785051 ATTGAAGCTACAATTCTTATACCCTAAAGTTATAGTAGGTCAGAATAAAACTACAACATTGAATC
1 A-TGAAGCTACAAATCCTATACCCTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAATC
* * * * *
83785116 CTATATCCCTGAAGTTACAGTGGATC-AG
65 TTATCTCTCTGAAGTTGCAGTGGAGCAAG
* * * * * * * * * ***
83785144 ATTGAAGCTACAATTCCTATACCCTTGAAGTTGCAATAGGTCAGAATAAAACTACAATGGTGAAT
1 A-TGAAGCTACAAATCCTATACCC-TAAAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAAT
* * * * * *
83785209 CATATATCCCTGAAGTTACAGTGGATC-GG
64 CTTATCTCTCTGAAGTTGCAGTGGAGCAAG
* * * * * **
83785238 ATTAAAGCTACAATTCCTATACCCCTAAAGTT-CTAGTGGGTCGGAATGAAACTACAATGGCGAA
1 A-TGAAGCTACAAATCCTATA-CCCTAAAGTTGC-AGTGGGTCGGATTGAATCTACCATAACGAA
* * * * *
83785302 TCTTACCTCCCTGAAGTTGCAATAGAACAAG
63 TCTTATCTCTCTGAAGTTGCAGTGGAGCAAG
* ** * * * * * *
83785333 ATGAAGTTATGATTCCTATACCTCTAAAGTTGCAGTAGGTCGAAATAAAAC-ACCAATAACGAAT
1 ATGAAGCTACAAATCCTATACC-CTAAAGTTGCAGTGGGTCGGATTGAATCTACC-ATAACGAAT
* * * *
83785397 CCTATATCCCTGAAGTTGCAGTGGATCGAA-
64 CTTATCTCTCTGAAGTTGCAGTGGAGC-AAG
* * * * * ** *
83785427 TTGAAGCTACAATTCCTATACCCCTAAAGTTGTAGTGGGTCAGATTAAATCTACCATAGTGTATC
1 ATGAAGCTACAAATCCTATA-CCCTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAATC
*
83785492 TTATCTCTCTAAAGTTGCAGTGGAGC-AG
65 TTATCTCTCTGAAGTTGCAGTGGAGCAAG
* * * * *
83785520 ATTGAAGCTACAAATTCTATACCCTAAAGTTACAATGGGTCGGATTGAAGT-TACCATAGCAAAT
1 A-TGAAGCTACAAATCCTATACCCTAAAGTTGCAGTGGGTCGGATTGAA-TCTACCATAACGAAT
* *
83785584 CTTATCTCTCTGAAGTTGTAGTGGAG-TAG
64 CTTATCTCTCTGAAGTTGCAGTGGAGCAAG
* * * * * * **
83785613 ATGAAGCTATAAATCCTATACCCCTGAAGTTGTAATGGGTCGGATTAAATTTA-CATTAGTGAAT
1 ATGAAGCTACAAATCCTATA-CCCTAAAGTTGCAGTGGGTCGGATTGAATCTACCA-TAACGAAT
** *
83785677 CTTATCTCTCTGAAGTTATAGTGAAGCGAA-
64 CTTATCTCTCTGAAGTTGCAGTGGAGC-AAG
* * * * * **
83785707 ATGAAACTACAAATCATATACCCTTGAAGTTGCAGCGGGTCAGATTGAATCTACCATAATAAATC
1 ATGAAGCTACAAATCCTATACCC-TAAAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAATC
* * * *
83785772 TTATCTCCCT-AAATATGCAATGGAACAAG
65 TTATCTCTCTGAAGT-TGCAGTGGAGCAAG
* *
83785801 ATGAAGCTATAAATCCTATACCTTTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAATC
1 ATGAAGCTACAAATCCTATACC-CTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAATC
*
83785866 TTATCTCTCTGAAGTTGCAGTAGAGCAAG
65 TTATCTCTCTGAAGTTGCAGTGGAGCAAG
* * * * *
83785895 ATGAAGATACAAATCTTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATATACCATAACGAATC
1 ATGAAGCTACAAATCCTATA-CCCTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAATC
* *
83785960 TTATCTCTCTGAAGATGCAGTGGAGTAAG
65 TTATCTCTCTGAAGTTGCAGTGGAGCAAG
83785989 ATGAAGCTACAAATCCTATATCCCTAAA
1 ATGAAGCTACAAATCCTATA-CCCTAAA
83786017 ATTACGGTGG
Statistics
Matches: 796, Mismatches: 142, Indels: 55
0.80 0.14 0.06
Matches are distributed among these distances:
92 21 0.03
93 210 0.26
94 544 0.68
95 21 0.03
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (93 bp):
ATGAAGCTACAAATCCTATACCCTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAATCT
TATCTCTCTGAAGTTGCAGTGGAGCAAG
Found at i:83786058 original size:94 final size:94
Alignment explanation
Indices: 83785492--83786087 Score: 278
Period size: 94 Copynumber: 6.4 Consensus size: 94
83785482 ATAGTGTATC
* * * * * *
83785492 TTATCTCTCTAAAGTTGCAGTGGAGC-AGATTGAAGCTACAAATTCTATA-CCCTAAAGTTACAA
1 TTATCTCTCTGAAGTTGCAGTAGAGCAAGA-TGAAGATACAAATCCTATACCCCTAAAATTACAG
* * * * * *
83785555 TGGGTCGGATTGAAGT-TACCATAGCAAATC
65 TGGATCAGATTGAA-TATACAACAACAAATA
* * * * * * * ** *
83785585 TTATCTCTCTGAAGTTGTAGTGGAG-TAGATGAAGCTATAAATCCTATACCCCTGAAGTTGTAAT
1 TTATCTCTCTGAAGTTGCAGTAGAGCAAGATGAAGATACAAATCCTATACCCCTAAAATTACAGT
* * * * ** *** *
83785649 GGGTCGGATTAAATTTACATTAGTGAATC
66 GGATCAGATTGAATATACAACAACAAATA
** * * * * *
83785678 TTATCTCTCTGAAGTTATAGT-GAAGCGAA-ATGAA-ACTACAAATCATATACCCTTGAAGTTGC
1 TTATCTCTCTGAAGTTGCAGTAG-AGC-AAGATGAAGA-TACAAATCCTATACCCCTAAAATTAC
* * * * * * *
83785740 AGCGGGTCAGATTGAATCTACCATAATAAATC
63 AGTGGATCAGATTGAATATACAACAACAAATA
* * * * * * * ** * *
83785772 TTATCTCCCT-AAATATGCAATGGAACAAGATGAAGCTATAAATCCTATACCTTTAAAGTTGCAG
1 TTATCTCTCTGAAGT-TGCAGTAGAGCAAGATGAAGATACAAATCCTATACCCCTAAAATTACAG
* * * * * * *
83785836 TGGGTCGGATTGAATCTACCATAACGAATC
65 TGGATCAGATTGAATATACAACAACAAATA
* * * *
83785866 TTATCTCTCTGAAGTTGCAGTAGAGCAAGATGAAGATACAAATCTTATACCCCTGAAGTTGCAGT
1 TTATCTCTCTGAAGTTGCAGTAGAGCAAGATGAAGATACAAATCCTATACCCCTAAAATTACAGT
* * * * *
83785931 GGGTCAGATTGAATATACCATAACGAATC
66 GGATCAGATTGAATATACAACAACAAATA
* * * * * *
83785960 TTATCTCTCTGAAGATGCAGTGGAGTAAGATGAAGCTACAAATCCTATATCCCTAAAATTACGGT
1 TTATCTCTCTGAAGTTGCAGTAGAGCAAGATGAAGATACAAATCCTATACCCCTAAAATTACAGT
* *
83786025 GGAAT-GGATTGAA-ACTACAACAGCAAATA
66 GG-ATCAGATTGAATA-TACAACAACAAATA
* * *
83786054 TTATCT-TCTTGAAGTTGCATTTGAACAAGATGAA
1 TTATCTCTC-TGAAGTTGCAGTAGAGCAAGATGAA
83786088 ACTGTAACAC
Statistics
Matches: 410, Mismatches: 78, Indels: 29
0.79 0.15 0.06
Matches are distributed among these distances:
92 19 0.05
93 90 0.22
94 295 0.72
95 6 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (94 bp):
TTATCTCTCTGAAGTTGCAGTAGAGCAAGATGAAGATACAAATCCTATACCCCTAAAATTACAGT
GGATCAGATTGAATATACAACAACAAATA
Found at i:83786347 original size:13 final size:13
Alignment explanation
Indices: 83786317--83786358 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
83786307 TTACCCAGCC
83786317 CAAACAAAT-AAAA
1 CAAA-AAATAAAAA
83786330 C-AAAAATAAAAA
1 CAAAAAATAAAAA
*
83786342 CAAAAAACAAAAA
1 CAAAAAATAAAAA
83786355 CAAA
1 CAAA
83786359 TAAAAGTCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 4 0.15
12 7 0.27
13 15 0.58
ACGTcount: A:0.81, C:0.14, G:0.00, T:0.05
Consensus pattern (13 bp):
CAAAAAATAAAAA
Found at i:83788630 original size:17 final size:17
Alignment explanation
Indices: 83788608--83788641 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
83788598 GTGTTAATCG
83788608 GGCATAAATGAACCGAT
1 GGCATAAATGAACCGAT
83788625 GGCATAAATGAACCGAT
1 GGCATAAATGAACCGAT
83788642 CACACCAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (17 bp):
GGCATAAATGAACCGAT
Found at i:83791739 original size:124 final size:124
Alignment explanation
Indices: 83791519--83791766 Score: 496
Period size: 124 Copynumber: 2.0 Consensus size: 124
83791509 TAAACTTGTG
83791519 CTTCAAGTAATCTTTTTAAATATTTAAGCTCTTTATAGAGTTGAGAGATAAAATAACAATTTTAA
1 CTTCAAGTAATCTTTTTAAATATTTAAGCTCTTTATAGAGTTGAGAGATAAAATAACAATTTTAA
83791584 TTGGAGACAATGTTAACTTGCTAAACAAGTATATTGTGACTCTACTAATGATTGATGTC
66 TTGGAGACAATGTTAACTTGCTAAACAAGTATATTGTGACTCTACTAATGATTGATGTC
83791643 CTTCAAGTAATCTTTTTAAATATTTAAGCTCTTTATAGAGTTGAGAGATAAAATAACAATTTTAA
1 CTTCAAGTAATCTTTTTAAATATTTAAGCTCTTTATAGAGTTGAGAGATAAAATAACAATTTTAA
83791708 TTGGAGACAATGTTAACTTGCTAAACAAGTATATTGTGACTCTACTAATGATTGATGTC
66 TTGGAGACAATGTTAACTTGCTAAACAAGTATATTGTGACTCTACTAATGATTGATGTC
83791767 TCCTAAGTTG
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
124 124 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (124 bp):
CTTCAAGTAATCTTTTTAAATATTTAAGCTCTTTATAGAGTTGAGAGATAAAATAACAATTTTAA
TTGGAGACAATGTTAACTTGCTAAACAAGTATATTGTGACTCTACTAATGATTGATGTC
Found at i:83799181 original size:24 final size:24
Alignment explanation
Indices: 83799154--83799206 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
83799144 ATTTATAGGT
* *
83799154 TAAATAAATTATGCTAATAAATGC
1 TAAATAAATTATACTAATAAATAC
*
83799178 TAAATATATTATACTAATAAATAC
1 TAAATAAATTATACTAATAAATAC
83799202 TAAAT
1 TAAAT
83799207 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.36
Consensus pattern (24 bp):
TAAATAAATTATACTAATAAATAC
Found at i:83801351 original size:25 final size:25
Alignment explanation
Indices: 83801301--83801354 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
83801291 ACACCCCACA
* *
83801301 GCTCTCATGAGCTTTCCGATACTTG
1 GCTCTCATAAGCTTTCCAATACTTG
*
83801326 GCTCTCATAAGC-TTCTCAATATTTG
1 GCTCTCATAAGCTTTC-CAATACTTG
83801351 GCTC
1 GCTC
83801355 GCAAGCGCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.37
Consensus pattern (25 bp):
GCTCTCATAAGCTTTCCAATACTTG
Found at i:83801389 original size:25 final size:25
Alignment explanation
Indices: 83801351--83801430 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
83801341 TCAATATTTG
* * *
83801351 GCTCGCAAGCGCTTCCCGATATATA
1 GCTCGCATGAGCTTCCCGTTATATA
* *
83801376 GCTCGTATGAGCTTCCCTTTACT-TA
1 GCTCGCATGAGCTTCCCGTTA-TATA
* *
83801401 GCTCACATGAGCTTCCCGTTATATG
1 GCTCGCATGAGCTTCCCGTTATATA
83801426 GCTCG
1 GCTCG
83801431 AAAAAGCTTC
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
24 1 0.02
25 41 0.95
26 1 0.02
ACGTcount: A:0.19, C:0.30, G:0.20, T:0.31
Consensus pattern (25 bp):
GCTCGCATGAGCTTCCCGTTATATA
Found at i:83803873 original size:24 final size:24
Alignment explanation
Indices: 83803845--83803896 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
83803835 TTCGTAGGTC
* *
83803845 AAATAAATTAT-GCTAATAAATGCT
1 AAATAAATTATATC-AATAAATACT
*
83803869 AAATATATTATATCAATAAATACT
1 AAATAAATTATATCAATAAATACT
83803893 AAAT
1 AAAT
83803897 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATATCAATAAATACT
Found at i:83806864 original size:17 final size:17
Alignment explanation
Indices: 83806844--83806897 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
83806834 TATTAATTAA
*
83806844 AAATATGAATTAAAAAT
1 AAATATTAATTAAAAAT
* **
83806861 AAATATTTATTAATTAT
1 AAATATTAATTAAAAAT
*
83806878 AAACATTAATTAAAAAT
1 AAATATTAATTAAAAAT
83806895 AAA
1 AAA
83806898 AAAACTTAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (17 bp):
AAATATTAATTAAAAAT
Found at i:83806873 original size:34 final size:34
Alignment explanation
Indices: 83806833--83806897 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
83806823 AATAAAAGAG
*
83806833 TTATTAATTAAAAATATGAATTAAAAATAAATAT
1 TTATTAATTAAAAACATGAATTAAAAATAAATAT
* *
83806867 TTATTAATTATAAACATTAATTAAAAATAAA
1 TTATTAATTAAAAACATGAATTAAAAATAAA
83806898 AAAACTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (34 bp):
TTATTAATTAAAAACATGAATTAAAAATAAATAT
Found at i:83809976 original size:21 final size:21
Alignment explanation
Indices: 83809952--83810005 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
83809942 ACTAATATTA
83809952 CAACCAATATGAATACGAAAG
1 CAACCAATATGAATACGAAAG
* * *
83809973 CAACCATTATAAATATGAAAG
1 CAACCAATATGAATACGAAAG
* *
83809994 CCACCTATATGA
1 CAACCAATATGA
83810006 TCAAGACGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.48, C:0.20, G:0.11, T:0.20
Consensus pattern (21 bp):
CAACCAATATGAATACGAAAG
Found at i:83819816 original size:158 final size:158
Alignment explanation
Indices: 83819528--83819835 Score: 521
Period size: 158 Copynumber: 1.9 Consensus size: 158
83819518 AGCCTTGTCC
*
83819528 ATGGTTGGATTTATTGGTGTTCTCAAGTTCTTCACCTAGGCACACCTATGCTATGCGCCTTAGCG
1 ATGGTTGGATTTATCGGTGTTCTCAAGTTCTTCACCTAGGCACACCTATGCTATGCGCCTTAGCG
*
83819593 CTAGGCAACAAAAGCACCTCAACCCTTTCAGGCGAGGCACATTTGATCAGGCACATTTCTGGTGC
66 CTAGGCAACAAAAGCACCTCAACCCTTTCAGGCGAGGCACATTTGATCAGGCACACTTCTGGTGC
83819658 TCTTAACTGCATTCTTTTTTGTAACACT
131 TCTTAACTGCATTCTTTTTTGTAACACT
**
83819686 ATGGTTGGATTTATCGGTGTTCTCAAGTT-TTGCACCTAGGCATGCCTATGCCT-TGCGCCTTAG
1 ATGGTTGGATTTATCGGTGTTCTCAAGTTCTT-CACCTAGGCACACCTATG-CTATGCGCCTTAG
*
83819749 CGCTAGGCAACAAAAGCACCTCAACCCTTTCAGGCGAGGCGCATTTGATCAGGCACACTTCTGGT
64 CGCTAGGCAACAAAAGCACCTCAACCCTTTCAGGCGAGGCACATTTGATCAGGCACACTTCTGGT
* *
83819814 GCTCTTAACTGCGTTTTTTTTT
129 GCTCTTAACTGCATTCTTTTTT
83819836 ATAAGGTGAT
Statistics
Matches: 141, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
157 2 0.01
158 137 0.97
159 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (158 bp):
ATGGTTGGATTTATCGGTGTTCTCAAGTTCTTCACCTAGGCACACCTATGCTATGCGCCTTAGCG
CTAGGCAACAAAAGCACCTCAACCCTTTCAGGCGAGGCACATTTGATCAGGCACACTTCTGGTGC
TCTTAACTGCATTCTTTTTTGTAACACT
Found at i:83827352 original size:17 final size:15
Alignment explanation
Indices: 83827308--83827457 Score: 103
Period size: 16 Copynumber: 9.8 Consensus size: 15
83827298 TCGAGTCAAT
83827308 AAATAAAAAAGA-AAA
1 AAATAAAAAA-ATAAA
*
83827323 AAA-AAAAGAA-AAA
1 AAATAAAAAAATAAA
*
83827336 AAATACAATAAATAAA
1 AAATA-AAAAAATAAA
* *
83827352 AAACAAAAATAAGATAA
1 AAATAAAAA-AATA-AA
*
83827369 AAATAAAGAAATAAA
1 AAATAAAAAAATAAA
*
83827384 AAA-AAAAAAAGAAAA
1 AAATAAAAAAA-TAAA
*
83827399 AAACAAAAAAATAAA
1 AAATAAAAAAATAAA
*
83827414 AAATGACAAAAATAAA
1 AAAT-AAAAAAATAAA
83827430 GAAATAATAAAAA-AAA
1 -AAATAA-AAAAATAAA
* *
83827446 TAATAATAAAAT
1 AAATAAAAAAAT
83827458 CATTCTCCTC
Statistics
Matches: 107, Mismatches: 17, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
13 7 0.07
14 16 0.15
15 32 0.30
16 34 0.32
17 18 0.17
ACGTcount: A:0.81, C:0.03, G:0.05, T:0.11
Consensus pattern (15 bp):
AAATAAAAAAATAAA
Found at i:83827354 original size:37 final size:37
Alignment explanation
Indices: 83827308--83827457 Score: 137
Period size: 39 Copynumber: 3.9 Consensus size: 37
83827298 TCGAGTCAAT
83827308 AAATAAAAAAGAAAAAAA-AAAAGAA-AAAAAATACAA
1 AAATAAAAAAGAAAAAAACAAAA-AATAAAAAATACAA
* *
83827344 TAAATAAAAAACAAAAATAAGATAAAAATAAAGAAATA-AA
1 -AAATAAAAAAGAAAAA-AACA-AAAAATAAA-AAATACAA
*
83827384 AAAAAAAAAAGAAAAAAACAAAAAAATAAAAAATGACAA
1 AAATAAAAAAGAAAAAAAC-AAAAAATAAAAAAT-ACAA
* *
83827423 AAATAAAGAAATAATAAAAA-AAATAATAATAAAAT
1 AAATAAA-AAAGAA-AAAAACAAAAAATAA-AAAAT
83827458 CATTCTCCTC
Statistics
Matches: 95, Mismatches: 7, Indels: 19
0.79 0.06 0.16
Matches are distributed among these distances:
37 19 0.20
38 14 0.15
39 34 0.36
40 18 0.19
41 10 0.11
ACGTcount: A:0.81, C:0.03, G:0.05, T:0.11
Consensus pattern (37 bp):
AAATAAAAAAGAAAAAAACAAAAAATAAAAAATACAA
Found at i:83827377 original size:46 final size:46
Alignment explanation
Indices: 83827312--83827416 Score: 124
Period size: 46 Copynumber: 2.3 Consensus size: 46
83827302 GTCAATAAAT
* * *
83827312 AAAAAAGAAAAAAAAAAAGAAA-AAAAATACAATAAA-TAAAAAACA
1 AAAAAAGAAAAAAAAAAAGAAATAAAAA-AAAAAAAAGAAAAAAACA
* *
83827357 AAAATAAGATAAAAATAAAGAAATAAAAAAAAAAAAAGAAAAAAACA
1 AAAA-AAGAAAAAAAAAAAGAAATAAAAAAAAAAAAAGAAAAAAACA
*
83827404 AAAAAATAAAAAA
1 AAAAAAGAAAAAA
83827417 TGACAAAAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
45 4 0.08
46 29 0.58
47 17 0.34
ACGTcount: A:0.85, C:0.03, G:0.05, T:0.08
Consensus pattern (46 bp):
AAAAAAGAAAAAAAAAAAGAAATAAAAAAAAAAAAAGAAAAAAACA
Found at i:83827389 original size:54 final size:54
Alignment explanation
Indices: 83827305--83827450 Score: 140
Period size: 54 Copynumber: 2.7 Consensus size: 54
83827295 ATATCGAGTC
* * *
83827305 AATAA-ATAAAAA-AGAAAAAAAAAAAGAAAAAAAATACAATAAATAA-AAAACAA-A
1 AATAAGATAAAAATA-AAGAAATAAAA-AAAAAAAATACAA-AAA-AACAAAAAAATA
*
83827359 AATAAGATAAAAATAAAGAAATAAAAAAAAAAAA-AGAAAAAAACAAAAAAATA
1 AATAAGATAAAAATAAAGAAATAAAAAAAAAAAATACAAAAAAACAAAAAAATA
* *
83827412 AAAAATGACAAAAATAAAGAAATAATAAAAAAAATAATA
1 AATAA-GATAAAAATAAAGAAATAA-AAAAAAAA-AATA
83827451 ATAAAATCAT
Statistics
Matches: 78, Mismatches: 6, Indels: 13
0.80 0.06 0.13
Matches are distributed among these distances:
51 2 0.03
52 9 0.12
53 8 0.10
54 31 0.40
55 24 0.31
56 3 0.04
57 1 0.01
ACGTcount: A:0.82, C:0.03, G:0.05, T:0.11
Consensus pattern (54 bp):
AATAAGATAAAAATAAAGAAATAAAAAAAAAAAATACAAAAAAACAAAAAAATA
Found at i:83827425 original size:1 final size:1
Alignment explanation
Indices: 83827312--83827416 Score: 66
Period size: 1 Copynumber: 105.0 Consensus size: 1
83827302 GTCAATAAAT
* * * * * * * * * * * *
83827312 AAAAAAGAAAAAAAAAAAGAAAAAAAATACAATAAATAAAAAACAAAAATAAGATAAAAATAAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
83827377 AAATAAAAAAAAAAAAAGAAAAAAACAAAAAAATAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
83827417 TGACAAAAAT
Statistics
Matches: 72, Mismatches: 32, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.85, C:0.03, G:0.05, T:0.08
Consensus pattern (1 bp):
A
Found at i:83827434 original size:8 final size:7
Alignment explanation
Indices: 83827308--83827457 Score: 88
Period size: 8 Copynumber: 19.6 Consensus size: 7
83827298 TCGAGTCAAT
83827308 AAATAAA
1 AAATAAA
*
83827315 AAAGAAA
1 AAATAAA
83827322 AAA-AAA
1 AAATAAA
*
83827328 AAGAAAAA
1 AA-ATAAA
83827336 AAATACAA
1 AAATA-AA
83827344 TAAATAAA
1 -AAATAAA
*
83827352 AAACAAAA
1 AAA-TAAA
*
83827360 ATAAGATAA
1 A-AATA-AA
83827369 AAATAAA
1 AAATAAA
83827376 GAAATAAA
1 -AAATAAA
*
83827384 AAAAAAA
1 AAATAAA
*
83827391 AAAGAAAA
1 AAA-TAAA
*
83827399 AAACAAAA
1 AAA-TAAA
83827407 AAATAAA
1 AAATAAA
83827414 AAATGACAA
1 AAAT-A-AA
83827423 AAATAAA
1 AAATAAA
83827430 GAAATAATA
1 -AAATAA-A
83827439 AAA-AAA
1 AAATAAA
83827445 ATAATAATA
1 A-AATAA-A
83827454 AAAT
1 AAAT
83827458 CATTCTCCTC
Statistics
Matches: 119, Mismatches: 8, Indels: 31
0.75 0.05 0.20
Matches are distributed among these distances:
6 7 0.06
7 39 0.33
8 54 0.45
9 19 0.16
ACGTcount: A:0.81, C:0.03, G:0.05, T:0.11
Consensus pattern (7 bp):
AAATAAA
Found at i:83829635 original size:159 final size:150
Alignment explanation
Indices: 83829332--83829629 Score: 327
Period size: 159 Copynumber: 1.9 Consensus size: 150
83829322 CCTTGTCCAT
*
83829332 GGTTGGATTTATTGGTGTTCTCAAGTTATTCACCTAGGCACACCATGCCTATGCGCCTTAGCGTA
1 GGTTGGATTTATCGGTGTTCTCAAGTTATTCACCTAGGCACACCATGCCTATGCGCCTTAGCGTA
*
83829397 GCAACCAAGCCCTCAACCGCTTTCAAGGCGAGGGCACATTTGATCAGGCAGCATTTCTGGTGCCT
66 GCAACAAAGCCCTCAACCGCTTTCAAGGCGAGGGCACATTTGATCAGGCAGCATTTCTGGTGCCT
83829462 TACTGCATTCTTTTTGTACCTA
131 TACTGC--TCTTTTTGTACCTA
* **
83829484 GGTTGGATTTAATCGGTGTTCTCAAGTTTTTGCAACCTTAGGCATGCCTATGCCT-TGCGCCTTA
1 GGTTGGATTT-ATCGGTGTTCTCAAGTTATT-C-ACC-TAGGCACACC-ATGCCTATGCGCCTTA
* ** *
83829548 GCGGATAGGC-ACAAAAGCACACTCACCCTTTTTC-AGGCGA-GGCGCATTTGATCAGGCCA-CA
61 GC-G-TA-GCAAC-AAAGC-C-CTCAACCGCTTTCAAGGCGAGGGCACATTTGATCAGG-CAGCA
83829609 TCTTCTGGTGCTCTTAACTGC
119 T-TTCTGGTGC-CTT-ACTGC
83829630 GTTTTTTTTA
Statistics
Matches: 122, Mismatches: 9, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
152 10 0.08
153 18 0.15
154 1 0.01
155 3 0.02
156 19 0.16
157 7 0.06
158 4 0.03
159 24 0.20
160 18 0.15
161 13 0.11
162 5 0.04
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (150 bp):
GGTTGGATTTATCGGTGTTCTCAAGTTATTCACCTAGGCACACCATGCCTATGCGCCTTAGCGTA
GCAACAAAGCCCTCAACCGCTTTCAAGGCGAGGGCACATTTGATCAGGCAGCATTTCTGGTGCCT
TACTGCTCTTTTTGTACCTA
Found at i:83839097 original size:158 final size:158
Alignment explanation
Indices: 83838809--83839116 Score: 521
Period size: 158 Copynumber: 1.9 Consensus size: 158
83838799 AGCCTTGTCC
*
83838809 ATGGTTGGATTTATTGGTGTTCTCAAGTTCTTCACCTAGGCACACCTATGCTATGCGCCTTAGCG
1 ATGGTTGGATTTATCGGTGTTCTCAAGTTCTTCACCTAGGCACACCTATGCTATGCGCCTTAGCG
*
83838874 CTAGGCAACAAAAGCACCTCAACCCTTTCAGGCGAGGCACATTTGATCAGGCACATTTCTGGTGC
66 CTAGGCAACAAAAGCACCTCAACCCTTTCAGGCGAGGCACATTTGATCAGGCACACTTCTGGTGC
83838939 TCTTAACTGCATTCTTTTTTGTAACACT
131 TCTTAACTGCATTCTTTTTTGTAACACT
**
83838967 ATGGTTGGATTTATCGGTGTTCTCAAGTT-TTGCACCTAGGCATGCCTATGCCT-TGCGCCTTAG
1 ATGGTTGGATTTATCGGTGTTCTCAAGTTCTT-CACCTAGGCACACCTATG-CTATGCGCCTTAG
*
83839030 CGCTAGGCAACAAAAGCACCTCAACCCTTTCAGGCGAGGCGCATTTGATCAGGCACACTTCTGGT
64 CGCTAGGCAACAAAAGCACCTCAACCCTTTCAGGCGAGGCACATTTGATCAGGCACACTTCTGGT
* *
83839095 GCTCTTAACTGCGTTTTTTTTT
129 GCTCTTAACTGCATTCTTTTTT
83839117 ATAAGGTGAT
Statistics
Matches: 141, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
157 2 0.01
158 137 0.97
159 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (158 bp):
ATGGTTGGATTTATCGGTGTTCTCAAGTTCTTCACCTAGGCACACCTATGCTATGCGCCTTAGCG
CTAGGCAACAAAAGCACCTCAACCCTTTCAGGCGAGGCACATTTGATCAGGCACACTTCTGGTGC
TCTTAACTGCATTCTTTTTTGTAACACT
Found at i:83842317 original size:32 final size:32
Alignment explanation
Indices: 83842281--83842351 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
83842271 GTGGTTGGTT
*
83842281 GTGTTTTGGTGGGAGCAGCAGCAAACCCGGTC
1 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC
*
83842313 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTG
1 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC
83842345 GTGTTTA
1 GTGTTTA
83842352 AGTGTCATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.20, C:0.18, G:0.38, T:0.24
Consensus pattern (32 bp):
GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC
Found at i:83845608 original size:33 final size:33
Alignment explanation
Indices: 83845534--83845616 Score: 93
Period size: 33 Copynumber: 2.5 Consensus size: 33
83845524 ATAAGGTTTT
* *
83845534 ATGATTAACAAA-AGAGATTTTCCTTTTTCGATA
1 ATGATTAACAAATAGAGAGTTCCCTTTTTC-ATA
83845567 ATGATTAACAAATAGAGAGTTCCCTTTTT-ATTA
1 ATGATTAACAAATAGAGAGTTCCCTTTTTCA-TA
83845600 AT-AGTTAAC-AATAGAGA
1 ATGA-TTAACAAATAGAGA
83845617 TGTAGATGCA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
32 10 0.22
33 21 0.47
34 14 0.31
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (33 bp):
ATGATTAACAAATAGAGAGTTCCCTTTTTCATA
Found at i:83846305 original size:18 final size:16
Alignment explanation
Indices: 83846275--83846320 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 16
83846265 ATGTTTAGTT
83846275 ATTTATTTATTTGATTTG
1 ATTTATTT-TTTG-TTTG
*
83846293 ATTTAATTTTTTGTTTT
1 ATTT-ATTTTTTGTTTG
83846310 ATTTATTTTTT
1 ATTTATTTTTT
83846321 TACATAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 7 0.27
17 7 0.27
18 8 0.31
19 4 0.15
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.74
Consensus pattern (16 bp):
ATTTATTTTTTGTTTG
Found at i:83855426 original size:19 final size:18
Alignment explanation
Indices: 83855391--83855443 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
83855381 TATCATCTTA
**
83855391 TAAAAATTTAAGTTTAAG
1 TAAAAATTTAAAATTAAG
83855409 TAAAATATTTAAAATTAAG
1 TAAAA-ATTTAAAATTAAG
* *
83855428 GATAAAATGTAAAATT
1 TA-AAAATTTAAAATT
83855444 TTATTTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 5 0.17
19 21 0.72
20 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (18 bp):
TAAAAATTTAAAATTAAG
Found at i:83856275 original size:13 final size:14
Alignment explanation
Indices: 83856239--83856275 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
83856229 TATGTATGTA
83856239 TATGAATTTTATTT
1 TATGAATTTTATTT
83856253 TAT-AATTTTA-TT
1 TATGAATTTTATTT
*
83856265 TATGAAATTTA
1 TATGAATTTTA
83856276 ACTTTAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
12 5 0.24
13 13 0.62
14 3 0.14
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (14 bp):
TATGAATTTTATTT
Found at i:83856725 original size:26 final size:24
Alignment explanation
Indices: 83856696--83856746 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
83856686 TAAAAAAATC
83856696 TTAATAATCTTAATTTTTTGTGTTAT
1 TTAATAATCTTAA-TTTTTGT-TTAT
* *
83856722 TTAATTATCTTTATTTTTGTTTAT
1 TTAATAATCTTAATTTTTGTTTAT
83856746 T
1 T
83856747 CCTCCTACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 7 0.30
26 11 0.48
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.67
Consensus pattern (24 bp):
TTAATAATCTTAATTTTTGTTTAT
Found at i:83858663 original size:21 final size:22
Alignment explanation
Indices: 83858623--83858666 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
83858613 TGACTTAATT
83858623 GATATAACTTGAAAATTTTAAA
1 GATATAACTTGAAAATTTTAAA
83858645 GATATAA-TT-AAATATTTTAAA
1 GATATAACTTGAAA-ATTTTAAA
83858666 G
1 G
83858667 TCTAAAAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 3 0.14
21 11 0.52
22 7 0.33
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (22 bp):
GATATAACTTGAAAATTTTAAA
Found at i:83860721 original size:23 final size:23
Alignment explanation
Indices: 83860693--83860739 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
83860683 TTAGAATGTC
83860693 TATTAGTTTAGGTTAATTGTAAT
1 TATTAGTTTAGGTTAATTGTAAT
83860716 TATTAGTTTAGGTTAATTGTAAT
1 TATTAGTTTAGGTTAATTGTAAT
83860739 T
1 T
83860740 TAATAATGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (23 bp):
TATTAGTTTAGGTTAATTGTAAT
Found at i:83863796 original size:48 final size:47
Alignment explanation
Indices: 83863691--83864004 Score: 289
Period size: 48 Copynumber: 6.7 Consensus size: 47
83863681 TACGTTGCGA
*
83863691 ATGAACCACTAGTCGTGCAGATAAACTGCCGACTAAATACGTTATGG
1 ATGAACCACTTGTCGTGCAGATAAACTGCCGACTAAATACGTTATGG
* * * * * *
83863738 ATAAACCACTTGTCGTGCATATAAATTGCTGACTAAAATATGTTGTGG
1 ATGAACCACTTGTCGTGCAGATAAACTGCCGACT-AAATACGTTATGG
* * * * * *
83863786 ATGAACCACTTGTCATGTAGATAAAAT--CTA-TTAATATGTTATGG
1 ATGAACCACTTGTCGTGCAGATAAACTGCCGACTAAATACGTTATGG
* * * * *
83863830 ATAAACCACTTGTCGTGCAAATAAA-AGCTG-CT-AATAAGTTATGG
1 ATGAACCACTTGTCGTGCAGATAAACTGCCGACTAAATACGTTATGG
* *
83863874 ATGAACCACTGGTCGTGCAGATAAACTGCCGACTAAAAGACGTTATGG
1 ATGAACCACTTGTCGTGCAGATAAACTGCCGACT-AAATACGTTATGG
* * * * * *
83863922 CTGAACCACTGGTCATGCAGTTAAACTGCCAACTAAAATACGTTGTGG
1 ATGAACCACTTGTCGTGCAGATAAACTGCCGACT-AAATACGTTATGG
* * * *
83863970 ATGAATCACTAGTCGTGCAGACAAACTGTCGACTA
1 ATGAACCACTTGTCGTGCAGATAAACTGCCGACTA
83864005 CTTCCTCCGT
Statistics
Matches: 214, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
44 65 0.30
45 5 0.02
46 3 0.01
47 30 0.14
48 111 0.52
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (47 bp):
ATGAACCACTTGTCGTGCAGATAAACTGCCGACTAAATACGTTATGG
Found at i:83863837 original size:44 final size:44
Alignment explanation
Indices: 83863694--83863898 Score: 176
Period size: 44 Copynumber: 4.5 Consensus size: 44
83863684 GTTGCGAATG
* * * * *
83863694 AACCACTAGTCGTGCAGATAAACTGCCGACTAAATACGTTATGGATA
1 AACCACTTGTCGTGCAGATAAAAT--CTA-TTAATATGTTATGGATA
* * * * *
83863741 AACCACTTGTCGTGCATATAAATTGCTGACTAAAATATGTTGTGGATG
1 AACCACTTGTCGTGCAGATAAAAT-CT-A-T-TAATATGTTATGGATA
* *
83863789 AACCACTTGTCATGTAGATAAAATCTATTAATATGTTATGGATA
1 AACCACTTGTCGTGCAGATAAAATCTATTAATATGTTATGGATA
* * ** * *
83863833 AACCACTTGTCGTGCAAATAAAAGCTGCTAATAAGTTATGGATG
1 AACCACTTGTCGTGCAGATAAAATCTATTAATATGTTATGGATA
*
83863877 AACCACTGGTCGTGCAGATAAA
1 AACCACTTGTCGTGCAGATAAA
83863899 CTGCCGACTA
Statistics
Matches: 131, Mismatches: 25, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
44 69 0.53
45 1 0.01
46 2 0.02
47 26 0.20
48 33 0.25
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29
Consensus pattern (44 bp):
AACCACTTGTCGTGCAGATAAAATCTATTAATATGTTATGGATA
Found at i:83863839 original size:92 final size:88
Alignment explanation
Indices: 83863661--83863898 Score: 242
Period size: 92 Copynumber: 2.6 Consensus size: 88
83863651 CCATCCATTA
* * * ** * * * * * *
83863661 GTGCAGATAAAAGTTGCTAATACGTTGCGAATGAACCACTAGTCGTGCAGATAAACTGCCGACTA
1 GTGCAAATAAAAGCTGCTAATAAGTTATGGATGAACCACTGGTCATGCAGATAAAAT--CTA-TT
83863726 AATACGTTATGGATAAACCACTTGTC
63 AATACGTTATGGATAAACCACTTGTC
* * * * * *
83863752 GTGCATATAAATTGCTGACTAAAATATGTTGTGGATGAACCACTTGTCATGTAGATAAAATCTAT
1 GTGCAAATAAA-AGCTG-CT--AATAAGTTATGGATGAACCACTGGTCATGCAGATAAAATCTAT
*
83863817 TAATATGTTATGGATAAACCACTTGTC
62 TAATACGTTATGGATAAACCACTTGTC
*
83863844 GTGCAAATAAAAGCTGCTAATAAGTTATGGATGAACCACTGGTCGTGCAGATAAA
1 GTGCAAATAAAAGCTGCTAATAAGTTATGGATGAACCACTGGTCATGCAGATAAA
83863899 CTGCCGACTA
Statistics
Matches: 123, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
88 32 0.26
90 2 0.02
91 14 0.11
92 39 0.32
93 4 0.03
95 32 0.26
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (88 bp):
GTGCAAATAAAAGCTGCTAATAAGTTATGGATGAACCACTGGTCATGCAGATAAAATCTATTAAT
ACGTTATGGATAAACCACTTGTC
Found at i:83864185 original size:34 final size:34
Alignment explanation
Indices: 83864047--83864309 Score: 194
Period size: 34 Copynumber: 7.8 Consensus size: 34
83864037 ATGTAACATG
* *
83864047 ACATGTTTATAACAAATCAATAC-GATAGCAA-TA
1 ACATGCTTATAACAAGTCAATACAG-TAGCAATTA
** * ** *
83864080 ACATGCTTATAGTAAGTCGATACAACATCAATTA
1 ACATGCTTATAACAAGTCAATACAGTAGCAATTA
* * * ** ***
83864114 TCATGCTTATAA-TAGACCAATATGGTAGCAGCAA
1 ACATGCTTATAACAAG-TCAATACAGTAGCAATTA
* **
83864148 ACATGCTTGTAACAAGTTGATACAGTAGCAATTA
1 ACATGCTTATAACAAGTCAATACAGTAGCAATTA
* *
83864182 ACATGCTTATAAC-TGATCAATACGGTAGCAATTA
1 ACATGCTTATAACAAG-TCAATACAGTAGCAATTA
* * * *
83864216 TCATGCTTATAATAAATCAATACAGTAGCAATAA
1 ACATGCTTATAACAAGTCAATACAGTAGCAATTA
* * *
83864250 ACATGCTTGTGACAAGTCAATACAATAGCAATTA
1 ACATGCTTATAACAAGTCAATACAGTAGCAATTA
*
83864284 GCATGCTTATAACATA-TCAATACAGT
1 ACATGCTTATAACA-AGTCAATACAGT
83864310 GGTAGGGGTG
Statistics
Matches: 169, Mismatches: 54, Indels: 13
0.72 0.23 0.06
Matches are distributed among these distances:
33 25 0.15
34 141 0.83
35 3 0.02
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (34 bp):
ACATGCTTATAACAAGTCAATACAGTAGCAATTA
Found at i:83864221 original size:68 final size:68
Alignment explanation
Indices: 83864047--83864297 Score: 220
Period size: 68 Copynumber: 3.7 Consensus size: 68
83864037 ATGTAACATG
* * ** ** *
83864047 ACATGTTTATAACAAATCAATACGATAGCAA-TAACATGCTTATAGTAAGTCGATACAACATCAA
1 ACATGCTTATAACTAATCAATACGATAGCAATTAACATGCTTATAACAAGTCGATACAGTAGCAA
83864111 TTA
66 TTA
* * * * *** * *
83864114 TCATGCTTATAA-TAGACCAATATGGTAGCAGCAAACATGCTTGTAACAAGTTGATACAGTAGCA
1 ACATGCTTATAACTA-ATCAATACGATAGCAATTAACATGCTTATAACAAGTCGATACAGTAGCA
83864178 ATTA
65 ATTA
* * * * * *
83864182 ACATGCTTATAACTGATCAATACGGTAGCAATTATCATGCTTATAATAAATCAATACAGTAGCAA
1 ACATGCTTATAACTAATCAATACGATAGCAATTAACATGCTTATAACAAGTCGATACAGTAGCAA
*
83864247 TAA
66 TTA
* * * *
83864250 ACATGCTTGTGAC-AAGTCAATACAATAGCAATTAGCATGCTTATAACA
1 ACATGCTTATAACTAA-TCAATACGATAGCAATTAACATGCTTATAACA
83864298 TATCAATACA
Statistics
Matches: 144, Mismatches: 36, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
66 1 0.01
67 23 0.16
68 119 0.83
69 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (68 bp):
ACATGCTTATAACTAATCAATACGATAGCAATTAACATGCTTATAACAAGTCGATACAGTAGCAA
TTA
Found at i:83864222 original size:102 final size:102
Alignment explanation
Indices: 83864047--83864306 Score: 283
Period size: 102 Copynumber: 2.6 Consensus size: 102
83864037 ATGTAACATG
* * * * ** * *** *
83864047 ACATGTTTATAACAAATCAATACGATAGCAA-TAACATGCTTATAGTA-AGTCGATACAACATCA
1 ACATGCTTGTAACAAGTCAATACAATAGCAATTAACATGCTTATAACATA-TCAATACGGTAGCA
* ** *
83864110 ATTATCATGCTTATAATAGACCAATATGGTAGCAGCAA
65 ATTATCATGCTTATAATAAACCAATACAGTAGCAACAA
** *
83864148 ACATGCTTGTAACAAGTTGATACAGTAGCAATTAACATGCTTATAAC-TGATCAATACGGTAGCA
1 ACATGCTTGTAACAAGTCAATACAATAGCAATTAACATGCTTATAACAT-ATCAATACGGTAGCA
* *
83864212 ATTATCATGCTTATAATAAATCAATACAGTAGCAATAA
65 ATTATCATGCTTATAATAAACCAATACAGTAGCAACAA
* *
83864250 ACATGCTTGTGACAAGTCAATACAATAGCAATTAGCATGCTTATAACATATCAATAC
1 ACATGCTTGTAACAAGTCAATACAATAGCAATTAACATGCTTATAACATATCAATAC
83864307 AGTGGTAGGG
Statistics
Matches: 130, Mismatches: 25, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
101 24 0.18
102 104 0.80
103 2 0.02
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (102 bp):
ACATGCTTGTAACAAGTCAATACAATAGCAATTAACATGCTTATAACATATCAATACGGTAGCAA
TTATCATGCTTATAATAAACCAATACAGTAGCAACAA
Found at i:83864463 original size:9 final size:9
Alignment explanation
Indices: 83864446--83864482 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
83864436 TGAGTTTTCA
83864446 AATTCGAAT
1 AATTCGAAT
*
83864455 AACTCGAAT
1 AATTCGAAT
83864464 AATTCGAAT
1 AATTCGAAT
83864473 AATTCGAAT
1 AATTCGAAT
83864482 A
1 A
83864483 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:83866911 original size:40 final size:41
Alignment explanation
Indices: 83866835--83866929 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 41
83866825 ACTATGTTTG
** *
83866835 GCACTTAGTGTGCG-ATTCGAGATAGCTTTGGCTATATAAA
1 GCACTTAGTGTGCGAATTCGAGATAGCTTCAGATATATAAA
* ***
83866875 GCACTTAGTGTGCGAATTGGA-ATAGCTTCAGATATATGTG
1 GCACTTAGTGTGCGAATTCGAGATAGCTTCAGATATATAAA
*
83866915 GCACTAAGTGTGCGA
1 GCACTTAGTGTGCGA
83866930 TACTAAGATA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 41 0.89
41 5 0.11
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (41 bp):
GCACTTAGTGTGCGAATTCGAGATAGCTTCAGATATATAAA
Found at i:83870167 original size:25 final size:25
Alignment explanation
Indices: 83870139--83870188 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
83870129 ATATTATTTT
*
83870139 TTTTGAAAT-TAAAAAATATATAAAA
1 TTTTAAAATATAAAAAATA-ATAAAA
*
83870164 TTTTAAAATATATAAAATAATAAAA
1 TTTTAAAATATAAAAAATAATAAAA
83870189 AAAGGTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (25 bp):
TTTTAAAATATAAAAAATAATAAAA
Found at i:83870187 original size:17 final size:17
Alignment explanation
Indices: 83870151--83870188 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
83870141 TTGAAATTAA
**
83870151 AAAATATATAAAATTTT
1 AAAATATATAAAATAAT
83870168 AAAATATATAAAATAAT
1 AAAATATATAAAATAAT
83870185 AAAA
1 AAAA
83870189 AAAGGTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAATATATAAAATAAT
Found at i:83870189 original size:9 final size:9
Alignment explanation
Indices: 83870151--83870188 Score: 53
Period size: 8 Copynumber: 4.4 Consensus size: 9
83870141 TTGAAATTAA
83870151 AAAATATAT
1 AAAATATAT
*
83870160 AAAAT-TTT
1 AAAATATAT
83870168 AAAATATAT
1 AAAATATAT
83870177 AAAATA-AT
1 AAAATATAT
83870185 AAAA
1 AAAA
83870189 AAAGGTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 13 0.50
9 13 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAATATAT
Done.