Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 251 of 311
Found at i:83870438 original size:33 final size:31
Alignment explanation
Indices: 83870380--83870442 Score: 81
Period size: 33 Copynumber: 2.0 Consensus size: 31
83870370 AGGATTTTTA
* *
83870380 TATATTTTAATTGTATATTTTTTTCATAAATT
1 TATATTTTAATTGTATATATGTTTCA-AAATT
*
83870412 TATATTTTATATTTTATATATGTTTCAAAAT
1 TATATTTTA-ATTGTATATATGTTTCAAAAT
83870443 AATAATAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (31 bp):
TATATTTTAATTGTATATATGTTTCAAAATT
Found at i:83878699 original size:52 final size:49
Alignment explanation
Indices: 83878614--83878882 Score: 301
Period size: 46 Copynumber: 5.6 Consensus size: 49
83878604 TTTGAGTACT
* **
83878614 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
83878660 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
83878712 TCTGATAAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
83878758 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
83878810 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
83878856 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
83878883 GCTACACTTA
Statistics
Matches: 197, Mismatches: 14, Indels: 24
0.84 0.06 0.10
Matches are distributed among these distances:
46 109 0.55
48 1 0.01
49 3 0.02
50 2 0.01
52 82 0.42
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:83878735 original size:98 final size:98
Alignment explanation
Indices: 83878614--83878882 Score: 439
Period size: 98 Copynumber: 2.7 Consensus size: 98
83878604 TTTGAGTACT
*
83878614 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
83878679 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* **
83878712 TCTGATAAAGTGATAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
83878777 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* * *
83878810 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
83878875 GATAAGTG
65 GAAAAGTG
83878883 GCTACACTTA
Statistics
Matches: 157, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
98 146 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (98 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:83878890 original size:37 final size:37
Alignment explanation
Indices: 83878846--83878954 Score: 168
Period size: 37 Copynumber: 3.0 Consensus size: 37
83878836 GATAGCTTTA
83878846 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* * *
83878883 GCTACACTTATGTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
83878920 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
83878955 ATCATACGTA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
35 11 0.17
36 4 0.06
37 50 0.77
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:83881957 original size:30 final size:30
Alignment explanation
Indices: 83881921--83881981 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
83881911 TCCTAAGGTT
*
83881921 CTTATTTATGATGTTCTTAATGTTCTTAGA
1 CTTATTTATGATGTTCGTAATGTTCTTAGA
83881951 CTTATTTATGATGTTCGTAATGTTCTTAGA
1 CTTATTTATGATGTTCGTAATGTTCTTAGA
83881981 C
1 C
83881982 GATTGATTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.11, G:0.15, T:0.51
Consensus pattern (30 bp):
CTTATTTATGATGTTCGTAATGTTCTTAGA
Found at i:83882366 original size:120 final size:120
Alignment explanation
Indices: 83882153--83882398 Score: 492
Period size: 120 Copynumber: 2.0 Consensus size: 120
83882143 TCTACAAAGC
83882153 TGTCATTAATATTGTTGCTGTGACCACCTCATGTTTAATGTTTTACATTATAATATGCATAAAGC
1 TGTCATTAATATTGTTGCTGTGACCACCTCATGTTTAATGTTTTACATTATAATATGCATAAAGC
83882218 AAATTGAATTTGTTCAAAACTCCATAAAAAGTGGATACTTAGACTATTTTTTTCT
66 AAATTGAATTTGTTCAAAACTCCATAAAAAGTGGATACTTAGACTATTTTTTTCT
83882273 TGTCATTAATATTGTTGCTGTGACCACCTCATGTTTAATGTTTTACATTATAATATGCATAAAGC
1 TGTCATTAATATTGTTGCTGTGACCACCTCATGTTTAATGTTTTACATTATAATATGCATAAAGC
83882338 AAATTGAATTTGTTCAAAACTCCATAAAAAGTGGATACTTAGACTATTTTTTTCT
66 AAATTGAATTTGTTCAAAACTCCATAAAAAGTGGATACTTAGACTATTTTTTTCT
83882393 TGTCAT
1 TGTCAT
83882399 CTTTAATGTT
Statistics
Matches: 126, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 126 1.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (120 bp):
TGTCATTAATATTGTTGCTGTGACCACCTCATGTTTAATGTTTTACATTATAATATGCATAAAGC
AAATTGAATTTGTTCAAAACTCCATAAAAAGTGGATACTTAGACTATTTTTTTCT
Found at i:83884264 original size:16 final size:16
Alignment explanation
Indices: 83884243--83884274 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
83884233 AATGAACGGT
83884243 GATTTCAATATAGTGC
1 GATTTCAATATAGTGC
83884259 GATTTCAATATAGTGC
1 GATTTCAATATAGTGC
83884275 TAAGTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (16 bp):
GATTTCAATATAGTGC
Found at i:83884560 original size:48 final size:48
Alignment explanation
Indices: 83884489--83884580 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
83884479 AATAGTGATT
* *
83884489 CCAATATAATTACCATGGTGATTCCAACACTATACTAAGATTTTACAA
1 CCAATACAATTACCATGGTGATTCCAACACAATACTAAGATTTTACAA
* *
83884537 CCAATACAGTTACCATGGTGATTCCAATACAATACTAAGATTTT
1 CCAATACAATTACCATGGTGATTCCAACACAATACTAAGATTTT
83884581 GCAAATGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (48 bp):
CCAATACAATTACCATGGTGATTCCAACACAATACTAAGATTTTACAA
Found at i:83886027 original size:17 final size:18
Alignment explanation
Indices: 83885991--83886028 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
83885981 ATAAAATTTC
*
83885991 AAATATTTTTAAACTAAA
1 AAATATTCTTAAACTAAA
*
83886009 AAATATTCTTGAA-TAAA
1 AAATATTCTTAAACTAAA
83886026 AAA
1 AAA
83886029 GGATTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (18 bp):
AAATATTCTTAAACTAAA
Found at i:83893711 original size:20 final size:22
Alignment explanation
Indices: 83893686--83893752 Score: 76
Period size: 20 Copynumber: 3.4 Consensus size: 22
83893676 AATTTTTTAT
83893686 TAAATTT-TAT-TTCAAATATA
1 TAAATTTATATATTCAAATATA
83893706 TAAATTTATATATTC-AA-ATA
1 TAAATTTATATATTCAAATATA
*
83893726 TAAA-TTACATATTCAAAT-TA
1 TAAATTTATATATTCAAATATA
83893746 -AAATTTA
1 TAAATTTA
83893753 AAATTAATTA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
19 12 0.29
20 21 0.51
21 5 0.12
22 3 0.07
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (22 bp):
TAAATTTATATATTCAAATATA
Found at i:83893739 original size:19 final size:20
Alignment explanation
Indices: 83893703--83893752 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
83893693 TATTTCAAAT
*
83893703 ATATAAATTTATATATTCAA
1 ATATAAATTTACATATTCAA
83893723 ATATAAA-TTACATATTCAA
1 ATATAAATTTACATATTCAA
83893742 AT-TAAAATTTA
1 ATAT-AAATTTA
83893753 AAATTAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 1 0.04
19 16 0.59
20 10 0.37
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (20 bp):
ATATAAATTTACATATTCAA
Found at i:83894198 original size:25 final size:22
Alignment explanation
Indices: 83894170--83894224 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
83894160 TTTAAGTGTT
83894170 TATTTTTAAAATTTATTTAATAATA
1 TATTTTTAAAA-TT-TTTAA-AATA
* *
83894195 TATTCTTATAATTTTTAAAATA
1 TATTTTTAAAATTTTTAAAATA
*
83894217 TAGTTTTA
1 TATTTTTA
83894225 CTAATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 10 0.38
23 5 0.19
24 2 0.08
25 9 0.35
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
TATTTTTAAAATTTTTAAAATA
Found at i:83895085 original size:45 final size:46
Alignment explanation
Indices: 83895017--83895113 Score: 142
Period size: 45 Copynumber: 2.1 Consensus size: 46
83895007 TACAACAACA
* *
83895017 ATTAGAGTTTTAGTTTTATTTATTTTCTTTATTATATCA-ATTTTT
1 ATTAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGATTTTT
* * *
83895062 ATTAGATTTTTAGTTTTACTTATTTTCTCTATTATATTAGGTTTTT
1 ATTAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGATTTTT
83895108 ATTAGA
1 ATTAGA
83895114 AATTTGGTAG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
45 35 0.76
46 11 0.24
ACGTcount: A:0.25, C:0.05, G:0.08, T:0.62
Consensus pattern (46 bp):
ATTAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGATTTTT
Found at i:83910387 original size:53 final size:53
Alignment explanation
Indices: 83910306--83910456 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
83910296 CTTACACAGT
* *
83910306 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
83910361 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
83910414 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
83910457 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:83912725 original size:21 final size:21
Alignment explanation
Indices: 83912701--83912742 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
83912691 TCATCAGATC
*
83912701 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
83912722 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
83912743 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:83915444 original size:52 final size:48
Alignment explanation
Indices: 83915382--83915574 Score: 187
Period size: 47 Copynumber: 4.0 Consensus size: 48
83915372 GAAATGTGAT
* *
83915382 TTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATC-GAG---TGTGATATGTGC
* *
83915434 TTCCGTATAAGACCATATCCGGGATATGGCATCG-GTGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * * *
83915481 TACTGTATAAGACCATATCTGGGATATGACATC-AGTGTGATATGTG-
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * * * *
83915527 ATCCGTGTAAGACCATGGCTGGGCTATGGCCTCG-GTATGTGATATGTG
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAG--TGTGATATGTG
83915575 ACTATGTGCA
Statistics
Matches: 120, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
46 25 0.21
47 53 0.44
48 11 0.09
50 1 0.01
51 1 0.01
52 29 0.24
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (48 bp):
TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
Found at i:83926656 original size:38 final size:37
Alignment explanation
Indices: 83926581--83926652 Score: 105
Period size: 35 Copynumber: 2.0 Consensus size: 37
83926571 TCAAATTTAA
*
83926581 TTTAATTTTTTTATTTTGAAGTAAATAAAATTATATTT
1 TTTAATTTTTTTATTTTG-AGAAAATAAAATTATATTT
83926619 TTTAA-TTTTTTATTTTG-GAAAATAAAATTA-ATTT
1 TTTAATTTTTTTATTTTGAGAAAATAAAATTATATTT
83926653 ATTTGAGTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
34 4 0.12
35 12 0.36
37 12 0.36
38 5 0.15
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.57
Consensus pattern (37 bp):
TTTAATTTTTTTATTTTGAGAAAATAAAATTATATTT
Found at i:83927140 original size:26 final size:26
Alignment explanation
Indices: 83927111--83927165 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
83927101 ATTTGATTTG
* * *
83927111 TTGGATTTTTAGTTTTTTATATTAAT
1 TTGGAGTTTTAGATTTGTATATTAAT
*
83927137 TTGGAGTTTTAGATTTGTATATTATT
1 TTGGAGTTTTAGATTTGTATATTAAT
83927163 TTG
1 TTG
83927166 ACAAAATTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (26 bp):
TTGGAGTTTTAGATTTGTATATTAAT
Found at i:83927232 original size:21 final size:23
Alignment explanation
Indices: 83927206--83927248 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
83927196 ATAGATTTTG
83927206 TTTTATAAA-TTTTAAA-TATTA
1 TTTTATAAAGTTTTAAAGTATTA
83927227 TTTTATAAAGTTTTAAAGTATT
1 TTTTATAAAGTTTTAAAGTATT
83927249 TTGTAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 7 0.35
23 4 0.20
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (23 bp):
TTTTATAAAGTTTTAAAGTATTA
Found at i:83927250 original size:20 final size:21
Alignment explanation
Indices: 83927206--83927256 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
83927196 ATAGATTTTG
*
83927206 TTTTATAAATTTTAAATATTA
1 TTTTATAAATTTTAAATAGTA
83927227 TTTTATAAAGTTTT-AA-AGTA
1 TTTTATAAA-TTTTAAATAGTA
*
83927247 TTTTGTAAAT
1 TTTTATAAAT
83927257 ATTTCTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 11 0.41
21 11 0.41
22 4 0.15
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (21 bp):
TTTTATAAATTTTAAATAGTA
Found at i:83928541 original size:23 final size:22
Alignment explanation
Indices: 83928509--83928552 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
83928499 AACCAATCCA
83928509 ATTCAACATATTT-TCAAGATAG
1 ATTCAACATATTTAT-AAGATAG
83928531 ATTCATACATATTTATAAGATA
1 ATTCA-ACATATTTATAAGATA
83928553 ACCTCATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 14 0.70
24 1 0.05
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (22 bp):
ATTCAACATATTTATAAGATAG
Found at i:83931964 original size:35 final size:35
Alignment explanation
Indices: 83931922--83931995 Score: 121
Period size: 35 Copynumber: 2.1 Consensus size: 35
83931912 TTTTCATTCA
* *
83931922 ATTATCTCTCATTCAATTGTTCGTTCTATGTAATT
1 ATTATCTCTCATTCAATTGTTCATTCTATATAATT
*
83931957 ATTATCTCTCATTCAATTGTTCATTTTATATAATT
1 ATTATCTCTCATTCAATTGTTCATTCTATATAATT
83931992 ATTA
1 ATTA
83931996 AGCTTTAAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.27, C:0.15, G:0.05, T:0.53
Consensus pattern (35 bp):
ATTATCTCTCATTCAATTGTTCATTCTATATAATT
Found at i:83936794 original size:26 final size:26
Alignment explanation
Indices: 83936723--83936795 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
83936713 TATTTTTTCG
83936723 AAATTTTACCAGAGG-TAAAATCATCA
1 AAATTTTACCAG-GGATAAAATCATCA
*
83936749 AAATTTTACCATGGGA-AAAATCCTCA
1 AAATTTTACCA-GGGATAAAATCATCA
*
83936775 AAATTTTACTAGGGATAAAAT
1 AAATTTTACCAGGGATAAAAT
83936796 AGGAATGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
25 4 0.10
26 37 0.88
27 1 0.02
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (26 bp):
AAATTTTACCAGGGATAAAATCATCA
Found at i:83938281 original size:43 final size:43
Alignment explanation
Indices: 83938126--83938275 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
83938116 GTTATTGTGG
* *
83938126 AAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTACGTGT
1 AAGACCACGTCTGGGACGTTGACATCGA-TATTTGA-TTACGTGT
* **
83938170 AAGACTACGTCTGGGACGTTGACATCG-TATTTGATTTTGTGT
1 AAGACCACGTCTGGGACGTTGACATCGATATTTGATTACGTGT
* * * *
83938212 AAGACC-CTATCTGGTACAG-TGACATTGATATTTGATTACATGT
1 AAGACCAC-GTCTGGGAC-GTTGACATCGATATTTGATTACGTGT
*
83938255 AAGACCATGTCTGGGACGTTG
1 AAGACCACGTCTGGGACGTTG
83938276 GCATTGTACG
Statistics
Matches: 85, Mismatches: 15, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.32
43 32 0.38
44 25 0.29
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
AAGACCACGTCTGGGACGTTGACATCGATATTTGATTACGTGT
Found at i:83943792 original size:48 final size:48
Alignment explanation
Indices: 83943722--83944095 Score: 527
Period size: 48 Copynumber: 7.8 Consensus size: 48
83943712 GACACCGTGC
*
83943722 TATATGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
* * * *
83943770 TATGTGTGCCTATGTAAGACCATGTCTGGGACATGGCATTGGCGATGA
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
* * *
83943818 TATATGTGCTTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGA
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
*
83943866 TATATGTGCTTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
* * *
83943914 TATGTGTGCCTGTGTAAGACCGTGTCTGGGACATGGCATCGATGATGA
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
* * * *
83943962 TATATGTGCCTGTGTAAGACCATGTTTGGGACATAGCATTGGTGATAA
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
* *
83944010 TATATGTGTCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATG-
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
** * *
83944057 -ATATGTGGATAATGTAAGACCATGTCGGGGACATGGCAT
1 TATATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
83944096 TGGTACTTTA
Statistics
Matches: 296, Mismatches: 29, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
46 8 0.03
47 26 0.09
48 262 0.89
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.30
Consensus pattern (48 bp):
TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
Found at i:83948890 original size:44 final size:44
Alignment explanation
Indices: 83948834--83949038 Score: 220
Period size: 44 Copynumber: 4.7 Consensus size: 44
83948824 TGTGTTATCG
* * *
83948834 TGTAAAACCACGTCTGGGACATTGGCATCGACTTATGGTTTGCA
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
* * *
83948878 TGTAAGATCACGTCTGAGACGTTGGCATCGACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
* * * *
83948922 TGTAAGACCACGTCTCGAACGTTGGCATCGACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
* * * *
83948966 TATAAGACCATGTTTGGGACATTGGCATCGTA-TT-TGATTT-CG
1 TGTAAGACCACGTCTGGGACATTGGCATCG-ACTTATGATTTACA
* *
83949008 TGTAAGACC-CTGTATGGGACAATGGCATCGA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGA
83949039 TATTTGATTA
Statistics
Matches: 138, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 27 0.20
43 6 0.04
44 103 0.75
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
Found at i:83949043 original size:43 final size:44
Alignment explanation
Indices: 83948944--83949047 Score: 133
Period size: 42 Copynumber: 2.4 Consensus size: 44
83948934 TCTCGAACGT
* * *
83948944 TGGCATCGACT-TATGATTTACGTATAAGACCATGTTTGGGACAT
1 TGGCATCGA-TATTTGATTTACGTATAAGACCATGTATGGGACAA
* *
83948988 TGGCATCG-TATTTGATTT-CGTGTAAGACCCTGTATGGGACAA
1 TGGCATCGATATTTGATTTACGTATAAGACCATGTATGGGACAA
83949030 TGGCATCGATATTTGATT
1 TGGCATCGATATTTGATT
83949048 ATATATACGA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
42 29 0.55
43 16 0.30
44 8 0.15
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (44 bp):
TGGCATCGATATTTGATTTACGTATAAGACCATGTATGGGACAA
Found at i:83951018 original size:14 final size:14
Alignment explanation
Indices: 83950975--83951008 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
83950965 ATATAAAGTA
*
83950975 AAAAAGA-AAAAAG
1 AAAAAGAGAGAAAG
83950988 AAAAAGAGAGAAAG
1 AAAAAGAGAGAAAG
83951002 AAAAAGA
1 AAAAAGA
83951009 AGCAGAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
AAAAAGAGAGAAAG
Found at i:83952248 original size:21 final size:22
Alignment explanation
Indices: 83952219--83952270 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
83952209 GATTATATGA
* *
83952219 ATTGGATTGGATAT-TGATTAT
1 ATTGAATTGGATATATGAATAT
*
83952240 ATTGAATT-GATTTATGAATAT
1 ATTGAATTGGATATATGAATAT
83952261 ATGTGAATTG
1 AT-TGAATTG
83952271 TTATTGAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 4 0.16
21 15 0.60
22 6 0.24
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (22 bp):
ATTGAATTGGATATATGAATAT
Found at i:83952278 original size:21 final size:21
Alignment explanation
Indices: 83952230--83952279 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
83952220 TTGGATTGGA
*
83952230 TATTGATTATATTGAATTGAT
1 TATTGAATATATTGAATTGAT
83952251 T-TATGAATATATGTGAATTG-T
1 TAT-TGAATATAT-TGAATTGAT
83952272 TATTGAAT
1 TATTGAAT
83952280 TGAAATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 16 0.64
22 8 0.32
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (21 bp):
TATTGAATATATTGAATTGAT
Found at i:83952286 original size:6 final size:6
Alignment explanation
Indices: 83952273--83952318 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
83952263 GTGAATTGTT
*
83952273 ATTG-A ATTGAA ATTGAA ATTGAA ATTGAA ATT-AA AATGTAA ATTGA
1 ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATTG-AA ATTGA
83952319 TTGGAAAAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
5 8 0.22
6 23 0.64
7 5 0.14
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (6 bp):
ATTGAA
Found at i:83953157 original size:45 final size:45
Alignment explanation
Indices: 83953087--83953325 Score: 343
Period size: 45 Copynumber: 5.3 Consensus size: 45
83953077 CTGTTACCGC
*
83953087 TACTGCTACTATTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
83953132 TACTACTACTGTTACCGATTTGGCACTTTGTGTGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
83953177 TACTGCTACTGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
83953222 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCAAATATTGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * * * * *
83953267 TACTGTTACCGTTACTGATTCAGCACTTTGTGTGTTGAATAATGT
1 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
**
83953312 TACTATTACTGTTA
1 TACTGCTACTGTTA
83953326 TTGTTCCAGA
Statistics
Matches: 177, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (45 bp):
TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:83953527 original size:18 final size:18
Alignment explanation
Indices: 83953506--83953696 Score: 142
Period size: 18 Copynumber: 10.6 Consensus size: 18
83953496 TAACTGATTA
83953506 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
83953524 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
*
83953542 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
83953560 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
83953578 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
83953596 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
83953614 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
83953632 CTACTGAATAACTT-AATAG
1 TTACTGAATAA-TTGACT-G
* *
83953651 TTACTGAAT-ATCT-AATT
1 TTACTGAATAAT-TGACTG
*
83953668 TTATTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
83953686 TTACTGGATAA
1 TTACTGAATAA
83953697 CCGATCAATT
Statistics
Matches: 140, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
17 16 0.11
18 109 0.78
19 15 0.11
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:83953582 original size:36 final size:36
Alignment explanation
Indices: 83953494--83953660 Score: 160
Period size: 36 Copynumber: 4.6 Consensus size: 36
83953484 AAAGGTATAA
* *
83953494 AATAACTGATTATTACTGAATAATTGACTGTTACCG
1 AATAACTGAATATTACTGAATAATTGACTGTTACTG
* * * * *
83953530 GATAATTGACTGTTACTGGAT-ATTAGACTGTTACTG
1 AATAACTGAATATTACTGAATAATT-GACTGTTACTG
*
83953566 AATAACTGAATATTACTGAATAATTGA-TCATTACTG
1 AATAACTGAATATTACTGAATAATTGACT-GTTACTG
* * * *
83953602 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTG
1 AATAACTGAATATTACTGAAT-AATTGACTGTTACTG
*
83953638 AATAACTTAATAGTTACTGAATA
1 AATAACTGAATA-TTACTGAATA
83953661 TCTAATTTTA
Statistics
Matches: 104, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
35 4 0.04
36 86 0.83
37 14 0.13
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (36 bp):
AATAACTGAATATTACTGAATAATTGACTGTTACTG
Found at i:83953631 original size:72 final size:72
Alignment explanation
Indices: 83953494--83953660 Score: 194
Period size: 72 Copynumber: 2.3 Consensus size: 72
83953484 AAAGGTATAA
* * * * * * *
83953494 AATAACTGATTATTACTGAATAATTGACTGTTACCGGATAATTGACTGTTACTGGATATTAGACT
1 AATAACTGAATATTACTGAATAATTGACTATTACCGAATAACTGACTGTCACTGAATAATAGACT
*
83953559 GTTACTG
66 GCTACTG
* *
83953566 AATAACTGAATATTACTGAATAATTGA-TCATTACTGAATAACTGATTGTCACTGAATGAAT-GA
1 AATAACTGAATATTACTGAATAATTGACT-ATTACCGAATAACTGACTGTCACTGAAT-AATAGA
83953629 CTGCTACTG
64 CTGCTACTG
*
83953638 AATAACTTAATAGTTACTGAATA
1 AATAACTGAATA-TTACTGAATA
83953661 TCTAATTTTA
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
71 1 0.01
72 68 0.84
73 12 0.15
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAATTGACTATTACCGAATAACTGACTGTCACTGAATAATAGACT
GCTACTG
Found at i:83961990 original size:6 final size:6
Alignment explanation
Indices: 83961981--83962040 Score: 102
Period size: 6 Copynumber: 10.0 Consensus size: 6
83961971 AATAATAATC
* *
83961981 GGGTTT GGGTTT GGGTTT GGGTTT GAGTTT GGGTTT GAGTTT GGGTTT
1 GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT
83962029 GGGTTT GGGTTT
1 GGGTTT GGGTTT
83962041 TATTTGGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.03, C:0.00, G:0.47, T:0.50
Consensus pattern (6 bp):
GGGTTT
Found at i:83968655 original size:19 final size:19
Alignment explanation
Indices: 83968627--83968675 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 19
83968617 AAAAAAAAAG
*
83968627 AGAAAAGAAAATAAAGTAA
1 AGAAATGAAAATAAAGTAA
83968646 AGAAATG--AA-AAAGTAA
1 AGAAATGAAAATAAAGTAA
*
83968662 A-AAATAAAAATAAA
1 AGAAATGAAAATAAA
83968676 ACAAAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
15 4 0.16
16 8 0.32
17 4 0.16
18 3 0.12
19 6 0.24
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (19 bp):
AGAAATGAAAATAAAGTAA
Found at i:83968671 original size:15 final size:16
Alignment explanation
Indices: 83968639--83968671 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
83968629 AAAAGAAAAT
*
83968639 AAAGTAAAGAAATGAA
1 AAAGTAAAGAAATAAA
83968655 AAAGTAAA-AAATAAA
1 AAAGTAAAGAAATAAA
83968670 AA
1 AA
83968672 TAAAACAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (16 bp):
AAAGTAAAGAAATAAA
Found at i:83970417 original size:7 final size:7
Alignment explanation
Indices: 83970398--83970430 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
83970388 GTTTTTGATT
83970398 GGTTTAG
1 GGTTTAG
83970405 GG-TTAG
1 GGTTTAG
83970411 GGTTTAG
1 GGTTTAG
83970418 TGGTTTAG
1 -GGTTTAG
83970426 GGTTT
1 GGTTT
83970431 TTAGAGTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.45
Consensus pattern (7 bp):
GGTTTAG
Found at i:83970884 original size:127 final size:126
Alignment explanation
Indices: 83970576--83970885 Score: 466
Period size: 128 Copynumber: 2.5 Consensus size: 126
83970566 ATTAACTATT
*
83970576 AATTACGGAAAAAAGCTCCCACGTGGACAC-TCTTTTGCTACAGTAATATCTG-AAAAATAATTT
1 AATTACGGAAAAAAGCTCCCACGTGGAC-CGTCTTTTGCTACAGTAGTATCTGAAAAAATAATTT
* *
83970639 TAAGAAGATGTTTCTAAATAAATAGTGTCAAAAACGCTTCAAGAAGGATGCATTGTCAGCAA
65 TAAGAAGATGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
* * *
83970701 AAGTATGGAAAAAAAGCTCCCACGTGGA-TGCTCTTTTGCTACAGTAGTAT-TGGAAAAAATAAT
1 AATTACGG-AAAAAAGCTCCCACGTGGACCG-TCTTTTGCTACAGTAGTATCT-GAAAAAATAA-
* *
83970764 TTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
62 TTTTAAGAAGATGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
*
83970829 AATTACGGAAAAAAGCTCCTACGTGGACCGTCTTTTGCTACAGTAGTATCTGAAAAA
1 AATTACGGAAAAAAGCTCCCACGTGGACCGTCTTTTGCTACAGTAGTATCTGAAAAA
83970886 GCCTTAGACT
Statistics
Matches: 165, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
125 7 0.04
126 38 0.23
127 51 0.31
128 69 0.42
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (126 bp):
AATTACGGAAAAAAGCTCCCACGTGGACCGTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
AAGAAGATGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
Found at i:83971836 original size:14 final size:15
Alignment explanation
Indices: 83971819--83971847 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83971809 GAGTATGGTA
83971819 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
83971833 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
83971848 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:83982969 original size:21 final size:22
Alignment explanation
Indices: 83982916--83982970 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
83982906 CAATTTAAAT
*
83982916 AATAATAACAATAACAATAATA
1 AATAATAATAATAACAATAATA
* *
83982938 ATTAA-ATATAA-AACTATAATA
1 AATAATA-ATAATAACAATAATA
83982959 AATAATAATAAT
1 AATAATAATAAT
83982971 TTAATATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.29
Consensus pattern (22 bp):
AATAATAATAATAACAATAATA
Found at i:83987500 original size:42 final size:43
Alignment explanation
Indices: 83987450--83987578 Score: 124
Period size: 42 Copynumber: 3.1 Consensus size: 43
83987440 TAAGTGCTAA
* * * * *
83987450 TGAAAACCCATAAGGGTTGAACATAAGCTTATAAGAGTTGAAC
1 TGAAAACCCATAAGGGTTAAACAAAAACTCATAAAAGTTGAAC
*
83987493 -GAAAACCCAGTAA-GGTTAAACAAAAACTCGTAAAAGTTGAAC
1 TGAAAACCCA-TAAGGGTTAAACAAAAACTCATAAAAGTTGAAC
* * **
83987535 TG-AAACCCATTAGGGTT-AACTAAAACTCATATGAGTT-AAC
1 TGAAAACCCATAAGGGTTAAACAAAAACTCATAAAAGTTGAAC
83987575 TGAA
1 TGAA
83987579 GCTCATGAGA
Statistics
Matches: 71, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
40 5 0.07
41 19 0.27
42 43 0.61
43 4 0.06
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (43 bp):
TGAAAACCCATAAGGGTTAAACAAAAACTCATAAAAGTTGAAC
Found at i:84005742 original size:11 final size:11
Alignment explanation
Indices: 84005696--84005803 Score: 52
Period size: 11 Copynumber: 9.9 Consensus size: 11
84005686 TTATCTAAAC
84005696 ATTAA-ATTAA
1 ATTAATATTAA
84005706 ATTTAATATTAA
1 A-TTAATATTAA
* *
84005718 AAT-A-ATTAC
1 ATTAATATTAA
*
84005727 TTTAATATTAA
1 ATTAATATTAA
84005738 ATTAATA--AA
1 ATTAATATTAA
*
84005747 A-TACTATTAA
1 ATTAATATTAA
84005757 CA-TAAGTATTAA
1 -ATTAA-TATTAA
84005769 ATTTAAT-TTAA
1 A-TTAATATTAA
84005780 TATTAAACTATTAA
1 -ATT-AA-TATTAA
*
84005794 AATAATATTA
1 ATTAATATTA
84005804 TTTTTAGAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 27
0.68 0.08 0.24
Matches are distributed among these distances:
8 4 0.05
9 8 0.11
10 5 0.07
11 30 0.40
12 18 0.24
13 6 0.08
14 4 0.05
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.43
Consensus pattern (11 bp):
ATTAATATTAA
Found at i:84005781 original size:37 final size:36
Alignment explanation
Indices: 84005712--84005803 Score: 96
Period size: 37 Copynumber: 2.4 Consensus size: 36
84005702 TTAAATTTAA
*
84005712 TATTAAAATAATTACTTTAATATTAAATTAATA-AAATAC
1 TATTAAAATAA-TA-TTAAAT-TTAAATTAATATAAA-AC
* * *
84005751 TATTAACATAAGTATTAAATTTAATTTAATATTAAAC
1 TATTAAAATAA-TATTAAATTTAAATTAATATAAAAC
84005788 TATTAAAATAATATTA
1 TATTAAAATAATATTA
84005804 TTTTTAGAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
36 5 0.11
37 22 0.48
38 7 0.15
39 12 0.26
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.42
Consensus pattern (36 bp):
TATTAAAATAATATTAAATTTAAATTAATATAAAAC
Found at i:84007283 original size:12 final size:12
Alignment explanation
Indices: 84007268--84007302 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
84007258 TAATCATCTA
84007268 TTTAATTTTTCC
1 TTTAATTTTTCC
84007280 TTTAATTTTTCC
1 TTTAATTTTTCC
84007292 TTTAATTTTTC
1 TTTAATTTTTC
84007303 ATCTATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTAATTTTTCC
Found at i:84014280 original size:22 final size:21
Alignment explanation
Indices: 84014228--84014280 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
84014218 TGACTTAATT
*
84014228 TAAATTTTATTCTTCAACTTC
1 TAAATTTTATACTTCAACTTC
** *
84014249 TCCATATTTATACTTTAACTTC
1 TAAAT-TTTATACTTCAACTTC
84014271 ATAAATTTTA
1 -TAAATTTTA
84014281 GATACTTACA
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.32, C:0.17, G:0.00, T:0.51
Consensus pattern (21 bp):
TAAATTTTATACTTCAACTTC
Found at i:84015430 original size:20 final size:18
Alignment explanation
Indices: 84015344--84015445 Score: 78
Period size: 18 Copynumber: 5.4 Consensus size: 18
84015334 GCTCTGATGA
84015344 GCTTCAGTTAGCCTTCGG
1 GCTTCAGTTAGCCTTCGG
* * *
84015362 GCTTCCGTTTAGCACTTATGT
1 GCTTCAG-TTAGC-CTT-CGG
84015383 GCTTCAGTTAGCCTTCGG
1 GCTTCAGTTAGCCTTCGG
* * *
84015401 GCTTCCGTTAGCACTTTTGT
1 GCTTCAGTTAGC-C-TTCGG
**
84015421 GCTTCAGTTAGATTTCGG
1 GCTTCAGTTAGCCTTCGG
*
84015439 GTTTCAG
1 GCTTCAG
84015446 ATCACGATGT
Statistics
Matches: 64, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
18 27 0.42
19 9 0.14
20 21 0.33
21 7 0.11
ACGTcount: A:0.13, C:0.24, G:0.25, T:0.39
Consensus pattern (18 bp):
GCTTCAGTTAGCCTTCGG
Found at i:84015439 original size:38 final size:39
Alignment explanation
Indices: 84015344--84015431 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
84015334 GCTCTGATGA
84015344 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
84015383 GCTTCAGTTAGCCTTCGGGCTTCCG-TTAGCACTTTTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
84015421 GCTTCAGTTAG
1 GCTTCAGTTAG
84015432 ATTTCGGGTT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 23 0.48
39 25 0.52
ACGTcount: A:0.12, C:0.25, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:84019238 original size:3 final size:3
Alignment explanation
Indices: 84019223--84019257 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
84019213 TATCTTACAA
*
84019223 TAC TAC TAT TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
84019258 TGGAGCACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.37
Consensus pattern (3 bp):
TAC
Found at i:84022367 original size:9 final size:10
Alignment explanation
Indices: 84022312--84022379 Score: 54
Period size: 9 Copynumber: 6.9 Consensus size: 10
84022302 AATTTTTTAA
84022312 AATTTAAAA-
1 AATTTAAAAT
* *
84022321 ATTTTAAAAA
1 AATTTAAAAT
84022331 AATTATAAAACT
1 AATT-TAAAA-T
*
84022343 ATTTTTAAAAT
1 A-ATTTAAAAT
84022354 --TTTAAAAT
1 AATTTAAAAT
84022362 AA-TTAAAAT
1 AATTTAAAAT
84022371 AATTTAAAA
1 AATTTAAAA
84022380 AGTATTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
8 8 0.17
9 17 0.35
10 9 0.19
11 6 0.12
12 6 0.12
13 2 0.04
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (10 bp):
AATTTAAAAT
Found at i:84022368 original size:40 final size:39
Alignment explanation
Indices: 84022305--84022388 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 39
84022295 TTTAATTAAT
*
84022305 TTTTTAAAATTTAAAAATTTTAAAAAAA-TTATAAAACTA
1 TTTTTAAAATTTAAAAATATTAAAAAAATTTA-AAAACTA
* * *
84022344 TTTTTAAAATTTTAAAATAATTAAAATAATTTAAAAAGTA
1 TTTTTAAAATTTAAAAAT-ATTAAAAAAATTTAAAAACTA
84022384 TTTTT
1 TTTTT
84022389 TTTGAATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
39 17 0.44
40 19 0.49
41 3 0.08
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (39 bp):
TTTTTAAAATTTAAAAATATTAAAAAAATTTAAAAACTA
Found at i:84022380 original size:20 final size:19
Alignment explanation
Indices: 84022310--84022386 Score: 66
Period size: 20 Copynumber: 3.9 Consensus size: 19
84022300 TTAATTTTTT
84022310 AAAATTTAAAAAT-TTTAAA
1 AAAATTTAAAAATATTT-AA
* **
84022329 AAAATTATAAAACTATTTTT
1 AAAATT-TAAAAATATTTAA
* *
84022349 AAAATTTTAAAATAATTAA
1 AAAATTTAAAAATATTTAA
84022368 AATAATTTAAAAAGTATTT
1 AA-AATTTAAAAA-TATTT
84022387 TTTTTGAATT
Statistics
Matches: 44, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
19 16 0.36
20 21 0.48
21 7 0.16
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (19 bp):
AAAATTTAAAAATATTTAA
Found at i:84026049 original size:6 final size:6
Alignment explanation
Indices: 84026038--84026071 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
84026028 AAACATGTTC
* *
84026038 AATTCT AATTCT AATTCT AATTCC AATTCC AATT
1 AATTCT AATTCT AATTCT AATTCT AATTCT AATT
84026072 TGAGTTTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (6 bp):
AATTCT
Found at i:84030838 original size:43 final size:43
Alignment explanation
Indices: 84030785--84030891 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
84030775 CTGAGATGTA
* * *
84030785 ATTACATGTAAGACCATATCTGGGACATTGACATTG-TATTGTG
1 ATTACGTGTAAGACCATATCTGGGACATTGACATCGTTATT-CG
* *
84030828 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATTCG
1 ATTACGTGTAAGACCATATCTGGGACATTGACATCGTTATTCG
* *
84030871 ATTTCGTGTAAGACCCTATCT
1 ATTACGTGTAAGACCATATCT
84030892 AGGATAGTGG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 51 0.93
44 4 0.07
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (43 bp):
ATTACGTGTAAGACCATATCTGGGACATTGACATCGTTATTCG
Found at i:84031222 original size:16 final size:17
Alignment explanation
Indices: 84031191--84031223 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
84031181 GATATACAAA
84031191 TATTCGTATGATGACTT
1 TATTCGTATGATGACTT
*
84031208 TATTTGTAT-ATGACTT
1 TATTCGTATGATGACTT
84031224 ACTAAGCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (17 bp):
TATTCGTATGATGACTT
Found at i:84038615 original size:43 final size:43
Alignment explanation
Indices: 84038520--84038642 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
84038510 ACCGAGATGT
* * * *
84038520 GATTACATCTAAGACCATGTCTGGGACATTGGCATTGTATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTGC
84038563 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTGC
* * *
84038606 GATTTCGTGTAAGATCC-TGTTTGGGACAGTGGCATCG
1 GATTACGTGTAAGA-CCATGTCTGGGACATTGGCATCG
84038643 ATATGTAATA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
43 65 0.92
44 6 0.08
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTGC
Found at i:84041958 original size:68 final size:67
Alignment explanation
Indices: 84041886--84042035 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
84041876 CATCATGTGT
* * * *
84041886 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
84041948 ATGTAG
62 ATGTAG
** * *
84041954 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
84042019 AG
66 AG
84042021 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
84042036 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:84041991 original size:64 final size:64
Alignment explanation
Indices: 84041910--84042093 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
84041900 AGACATTATG
* *
84041910 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
84041974 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
84042039 AA
63 AA
* * * *
84042041 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
84042094 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:84046394 original size:68 final size:67
Alignment explanation
Indices: 84046322--84046471 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
84046312 CATCATGTGT
* * * *
84046322 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
84046384 ATGTAG
62 ATGTAG
** * *
84046390 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
84046455 AG
66 AG
84046457 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
84046472 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:84046427 original size:64 final size:64
Alignment explanation
Indices: 84046346--84046528 Score: 192
Period size: 67 Copynumber: 2.8 Consensus size: 64
84046336 AGACATTATG
* *
84046346 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
84046410 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
84046475 AA
63 AA
* * * *
84046477 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAG
84046529 TCGAATTATA
Statistics
Matches: 97, Mismatches: 17, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:84061995 original size:6 final size:6
Alignment explanation
Indices: 84061984--84062010 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
84061974 ATATGTTCAG
84061984 TTCTAA TTCTAA TTCTAA TTCTAA TTC
1 TTCTAA TTCTAA TTCTAA TTCTAA TTC
84062011 CGATTCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.52
Consensus pattern (6 bp):
TTCTAA
Found at i:84062392 original size:26 final size:26
Alignment explanation
Indices: 84062361--84062410 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
84062351 AAATTATTGA
*
84062361 AATACCCTTGGTTTACAATATTACTT
1 AATACCCTTGGTTTACAAAATTACTT
*
84062387 AATACCCTTGGTTTATAAAATTAC
1 AATACCCTTGGTTTACAAAATTAC
84062411 CAAAATACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.40
Consensus pattern (26 bp):
AATACCCTTGGTTTACAAAATTACTT
Found at i:84062482 original size:27 final size:27
Alignment explanation
Indices: 84062387--84062720 Score: 208
Period size: 27 Copynumber: 12.3 Consensus size: 27
84062377 AATATTACTT
* *
84062387 AATACCCTTGGTTTATAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* * * *
84062414 AATACCGTCGATTAGCAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
**
84062441 AATATCATTTG-TTTGTAAAATTACCAA
1 AATA-CCCTTGATTTGTAAAATTACCAA
* * * **
84062468 AATACCCCTGATTTGTGAAATTTCTGA
1 AATACCCTTGATTTGTAAAATTACCAA
** ***
84062495 AATACCCTTGACCTGTAAAATTATTGA
1 AATACCCTTGATTTGTAAAATTACCAA
* * * **
84062522 AATACCCTCGACTTGTAAAACTACTGA
1 AATACCCTTGATTTGTAAAATTACCAA
** *
84062549 AATACCCTCAATTTTTAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* *
84062576 AATACCCTTGATTTGGAAAATTATCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* * **
84062603 AATACCCCTAATTTACAAAATTA-CAGA
1 AATACCCTTGATTTGTAAAATTACCA-A
* **
84062630 AATACCATTGACTTTCAAAAATTA-CAGA
1 AATACCCTTGA-TTTGTAAAATTACCA-A
* * * *
84062658 AATACCATTGGTTTGCAAAATTACTAA
1 AATACCCTTGATTTGTAAAATTACCAA
* * *
84062685 AATACCCTT-AGTTTGTAGATTTACCGA
1 AATACCCTTGA-TTTGTAAAATTACCAA
*
84062712 AACACCCTT
1 AATACCCTT
84062721 ATAGGCTGAA
Statistics
Matches: 241, Mismatches: 60, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
26 5 0.02
27 208 0.86
28 28 0.12
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AATACCCTTGATTTGTAAAATTACCAA
Found at i:84063003 original size:41 final size:41
Alignment explanation
Indices: 84062958--84063080 Score: 165
Period size: 41 Copynumber: 3.0 Consensus size: 41
84062948 AGAGGAAGAA
*
84062958 ATTGAGGATCGCATGGTTGCTTGACAACCGTGGATCCACTG
1 ATTGAGGATCGCATGGTTGCTTGACAACCGTGGATCCACCG
* * *
84062999 ATTGAGGATCGCATGATTGCTTGGCTACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACAACCGTGGATCCACCG
* * * **
84063040 ATTAAAGATCGCATGGTTGTTTGATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACAACCGTGGATCCACCG
84063081 GTGGCTTTTA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACAACCGTGGATCCACCG
Found at i:84063260 original size:22 final size:22
Alignment explanation
Indices: 84063227--84063286 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
84063217 TTATTCTAAT
84063227 TATGGCTT-TGTGCCAACCT-ACA
1 TATGG-TTGTGTGCCAACCTGA-A
*
84063249 TATGGTTGTGTGCCAACCTGAT
1 TATGGTTGTGTGCCAACCTGAA
*
84063271 TATGGCTGTGTGCCAA
1 TATGGTTGTGTGCCAA
84063287 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 2 0.06
22 31 0.91
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (22 bp):
TATGGTTGTGTGCCAACCTGAA
Found at i:84065907 original size:28 final size:28
Alignment explanation
Indices: 84065867--84065933 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
84065857 TCGGACTAGG
84065867 ATGTGTTTTGATGCAAGAAGG-AAAATAC
1 ATGTGTTTTGATGCAAGAAGGCAAAAT-C
*
84065895 ATGTGTTTTGATGCAAGAAGGCAAAGTC
1 ATGTGTTTTGATGCAAGAAGGCAAAATC
84065923 ATGTGTTTTGA
1 ATGTGTTTTGA
84065934 AGCCACACGA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
28 33 0.89
29 4 0.11
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (28 bp):
ATGTGTTTTGATGCAAGAAGGCAAAATC
Found at i:84083367 original size:46 final size:46
Alignment explanation
Indices: 84083317--84083489 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
84083307 TGGTTGAGCA
*
84083317 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
84083363 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
84083410 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
84083456 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
84083490 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:84083469 original size:93 final size:93
Alignment explanation
Indices: 84083314--84083484 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
84083304 GGATGGTTGA
* *
84083314 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
84083379 TGAGTCCAAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* * * *
84083407 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
84083472 TGAGTCCGAGTTC
66 TGAGTCCAAGTTC
84083485 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:84089777 original size:28 final size:28
Alignment explanation
Indices: 84089741--84089807 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
84089731 ACTCAGTGTA
*
84089741 CAAAATATTGAGAATGGCACTTAATGTG
1 CAAAATATTGAGAATGACACTTAATGTG
* * *
84089769 CGAGATATTGAGAATGACACTTAGTGTG
1 CAAAATATTGAGAATGACACTTAATGTG
84089797 CAAAATATTGA
1 CAAAATATTGA
84089808 ATGATTAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.28
Consensus pattern (28 bp):
CAAAATATTGAGAATGACACTTAATGTG
Found at i:84089924 original size:39 final size:39
Alignment explanation
Indices: 84089880--84090053 Score: 269
Period size: 39 Copynumber: 4.5 Consensus size: 39
84089870 GACTTTATAA
*
84089880 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
84089919 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCATGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
84089958 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
84089997 TGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
*
84090036 TGGTATTATATCCGGGCT
1 TGGTGTTATATCCGGGCT
84090054 TAAAGTTCCG
Statistics
Matches: 126, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 114 0.90
40 12 0.10
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.32
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:84094588 original size:23 final size:23
Alignment explanation
Indices: 84094539--84094613 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 23
84094529 AGCTCTATTA
* *
84094539 AGCTGAAAACGATAAGCTCCA-ATG
1 AGCTG-AAACAATAAGCT-CATACG
* * *
84094563 AGCTGAAACAGTAATCTCTTACG
1 AGCTGAAACAATAAGCTCATACG
*
84094586 AGCTGAATCAATAAGCTCATACG
1 AGCTGAAACAATAAGCTCATACG
84094609 AGCTG
1 AGCTG
84094614 TGGTGAGTCC
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
22 1 0.02
23 35 0.85
24 5 0.12
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.21
Consensus pattern (23 bp):
AGCTGAAACAATAAGCTCATACG
Found at i:84098629 original size:22 final size:21
Alignment explanation
Indices: 84098594--84098643 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
84098584 TTACCGATCA
84098594 ATACTCATCATTTA-ACATAC
1 ATACTCATCATTTATACATAC
*
84098614 ATAACTCATACATTTATACATTC
1 AT-ACTCAT-CATTTATACATAC
84098637 ATACTCA
1 ATACTCA
84098644 AATACCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 2 0.08
21 6 0.23
22 11 0.42
23 7 0.27
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (21 bp):
ATACTCATCATTTATACATAC
Found at i:84100979 original size:43 final size:43
Alignment explanation
Indices: 84100932--84101017 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
84100922 CCGCAAACAT
84100932 AGTCAAACATCATTATAGAGTCCCTTATATAGGTCATCGAGAC
1 AGTCAAACATCATTATAGAGTCCCTTATATAGGTCATCGAGAC
84100975 AGTCAAACATCATTATAGAGTCCCTTATATAGGTCATCGAGAC
1 AGTCAAACATCATTATAGAGTCCCTTATATAGGTCATCGAGAC
84101018 CTTAATCATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (43 bp):
AGTCAAACATCATTATAGAGTCCCTTATATAGGTCATCGAGAC
Found at i:84103666 original size:47 final size:47
Alignment explanation
Indices: 84103614--84104017 Score: 673
Period size: 47 Copynumber: 8.6 Consensus size: 47
84103604 GATAATTGTG
* *
84103614 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84103661 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84103710 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84103757 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84103804 ATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84103851 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84103898 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
84103945 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84103992 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
84104018 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 290 0.86
49 47 0.14
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:84104192 original size:37 final size:37
Alignment explanation
Indices: 84104136--84104214 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
84104126 CCGAGCTCTA
* * * *
84104136 AAGACCCGATGACTACGTGTGGGGATTTTGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
84104173 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
84104210 AAGAC
1 AAGAC
84104215 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:84125469 original size:12 final size:12
Alignment explanation
Indices: 84125452--84125479 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
84125442 AACTAAAAGT
84125452 ACTAGTTACTAA
1 ACTAGTTACTAA
84125464 ACTAGTTACTAA
1 ACTAGTTACTAA
84125476 ACTA
1 ACTA
84125480 AGAATGCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (12 bp):
ACTAGTTACTAA
Found at i:84133786 original size:45 final size:45
Alignment explanation
Indices: 84133726--84133811 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
84133716 ATAGGATCCG
* * *
84133726 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGGTTACGTGTAAGACCACGTCTGGGACATTGGCATCGAT
*
84133771 ATATGTGGTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 ATATGTGGTTACGTGTAAGACCACGTCTGGGACATTGGCAT
84133812 TGTATTTGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (45 bp):
ATATGTGGTTACGTGTAAGACCACGTCTGGGACATTGGCATCGAT
Found at i:84135605 original size:13 final size:13
Alignment explanation
Indices: 84135589--84135624 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
84135579 CCTTCACTCC
84135589 AACCACCCCACTA
1 AACCACCCCACTA
*
84135602 AACCACTCCACTA
1 AACCACCCCACTA
*
84135615 AACCATCCCA
1 AACCACCCCA
84135625 ACCACTCCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.39, C:0.50, G:0.00, T:0.11
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:84141001 original size:25 final size:28
Alignment explanation
Indices: 84140951--84141002 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 28
84140941 CAATATTTTT
*
84140951 GTATGAAAATTGATATGATAGGAAAATC
1 GTATGAAAATTGATATGATAGAAAAATC
84140979 GTATGAAAA-T-AT-TGATAGAAAAAT
1 GTATGAAAATTGATATGATAGAAAAAT
84141003 TTTACTGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
26 2 0.09
27 1 0.04
28 9 0.39
ACGTcount: A:0.50, C:0.02, G:0.19, T:0.29
Consensus pattern (28 bp):
GTATGAAAATTGATATGATAGAAAAATC
Found at i:84141491 original size:45 final size:45
Alignment explanation
Indices: 84141441--84141530 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
84141431 CTAAAAATGC
84141441 CATAGGAGGGTTTTCTAAGCTGGTATTCCATAATTTTTGCACCAA
1 CATAGGAGGGTTTTCTAAGCTGGTATTCCATAATTTTTGCACCAA
84141486 CATAGGAGGGTTTTCTAAGCTGGTATTCCATAATTTTTGCACCAA
1 CATAGGAGGGTTTTCTAAGCTGGTATTCCATAATTTTTGCACCAA
84141531 GTGAGTTAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (45 bp):
CATAGGAGGGTTTTCTAAGCTGGTATTCCATAATTTTTGCACCAA
Found at i:84143695 original size:23 final size:23
Alignment explanation
Indices: 84143669--84143713 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
84143659 TAGGTATGTG
*
84143669 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
84143692 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
84143714 TTGAAAAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:84154552 original size:27 final size:27
Alignment explanation
Indices: 84154531--84154926 Score: 256
Period size: 27 Copynumber: 14.7 Consensus size: 27
84154521 CTTTACACTA
84154531 CAAGGGTATTTTGATAATTTTACAAA-
1 CAAGGGTATTTTGATAATTTTACAAAT
* * *
84154557 CTGAGGGTGTTTCGATAATTTTACAAAT
1 C-AAGGGTATTTTGATAATTTTACAAAT
**
84154585 TGAGGGTATTTTGATAATTTTACAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
* *
84154612 CAAGGGTGTTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
* * * *
84154639 CGAGGGTGTTTCGGTAATTTTACAAATT
1 CAAGGGTATTTTGATAATTTTACAAA-T
* * **
84154667 GAA-GGT-GTTCCAGTAATTTTACAAAT
1 CAAGGGTATTTTGA-TAATTTTACAAAT
* *
84154693 C-GGGGATATTTTGGTAATTTTACAAAT
1 CAAGGG-TATTTTGATAATTTTACAAAT
* * *
84154720 CGAGGGTA-TTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGA-TAATTTTACAAAT
** *
84154747 TGAGGGTATTTT-AGTAATTTCAC-AAT
1 CAAGGGTATTTTGA-TAATTTTACAAAT
* *
84154773 CGAGGGTATTTTGATAATTTTACGAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
** * * *
84154800 CGGGGGTATTTCGGTAATTTTATAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
* *
84154827 TAAGGGTATTTT-AGTAATTTCAC-AAT
1 CAAGGGTATTTTGA-TAATTTTACAAAT
* * *
84154853 CGATGGTATTTCTG-TAATTTTATAAAT
1 CAAGGGTATTT-TGATAATTTTACAAAT
*** * *
84154880 TGGGGGTATTTCGACAATTTTACAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
* *
84154907 CGAGGTTATTTT-AGTAATTT
1 CAAGGGTATTTTGA-TAATTT
84154927 CTCTTTATTA
Statistics
Matches: 294, Mismatches: 58, Indels: 35
0.76 0.15 0.09
Matches are distributed among these distances:
26 52 0.18
27 232 0.79
28 10 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGATAATTTTACAAAT
Found at i:84154580 original size:54 final size:53
Alignment explanation
Indices: 84154533--84154926 Score: 320
Period size: 54 Copynumber: 7.3 Consensus size: 53
84154523 TTACACTACA
*
84154533 AGGGTATTTTGATAATTTTACAAACTGAGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTTGATAATTTTACAAA-TGAGGGTGTTTCGATAATTTTACAAATCG
* * *
84154587 AGGGTATTTTGATAATTTTACAAATCAAGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAAT-GAGGGTGTTTCGATAATTTTACAAATCG
* * * * *
84154641 AGGGTGTTTCGGTAATTTTACAAATTGAAGGTG-TTCCAGTAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAA-TGAGGGTGTTTCGA-TAATTTTACAAATCG
* * * *
84154695 -GGGATATTTTGGTAATTTTACAAATCGAGGGTATTTC-AGTAATTTCACAAATTG
1 AGGG-TATTTTGATAATTTTACAAAT-GAGGGTGTTTCGA-TAATTTTACAAATCG
* * * *
84154749 AGGGTATTTT-AGTAATTTCAC-AATCGAGGGTATTTTGATAATTTTACGAATCG
1 AGGGTATTTTGA-TAATTTTACAAAT-GAGGGTGTTTCGATAATTTTACAAATCG
* * * * * * * *
84154802 GGGGTATTTCGGTAATTTTATAAATTAAGGGTATTT-TAGTAATTTCAC-AATCG
1 AGGGTATTTTGATAATTTTACAAA-TGAGGGTGTTTCGA-TAATTTTACAAATCG
* * * * *
84154855 ATGGTATTTCTG-TAATTTTATAAATTGGGGGTATTTCGACAATTTTACAAATCG
1 AGGGTATTT-TGATAATTTTACAAA-TGAGGGTGTTTCGATAATTTTACAAATCG
*
84154909 AGGTTATTTT-AGTAATTT
1 AGGGTATTTTGA-TAATTT
84154927 CTCTTTATTA
Statistics
Matches: 280, Mismatches: 42, Indels: 36
0.78 0.12 0.10
Matches are distributed among these distances:
53 91 0.32
54 181 0.65
55 8 0.03
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (53 bp):
AGGGTATTTTGATAATTTTACAAATGAGGGTGTTTCGATAATTTTACAAATCG
Found at i:84154630 original size:81 final size:80
Alignment explanation
Indices: 84154531--84154927 Score: 444
Period size: 81 Copynumber: 4.9 Consensus size: 80
84154521 CTTTACACTA
* *
84154531 CAAGGGTATTTTGATAATTTTACAAA-CTGAGGGTGTTTCGATAATTTTACAAATTGAGGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAATC-GAGGGTATTTCGATAATTTTACAAATTGAGGGTATT
*
84154595 TT-GATAATTTTACAAAT
65 TTAG-TAATTTCAC-AAT
* * * * * *
84154612 CAAGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATTGAAGGTGTTC
1 CAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATTGAGGGTATTT
* *
84154677 CAGTAATTTTACAAAT
66 TAGTAATTTCAC-AAT
* *
84154693 C-GGGGATATTTTGGTAATTTTACAAATCGAGGGTATTTC-AGTAATTTCACAAATTGAGGGTAT
1 CAAGGG-TATTTTGGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATTGAGGGTAT
84154756 TTTAGTAATTTCACAAT
64 TTTAGTAATTTCACAAT
* * * * * * *
84154773 CGAGGGTATTTTGATAATTTTACGAATCGGGGGTATTTCGGTAATTTTATAAATTAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATTGAGGGTATTT
84154838 TAGTAATTTCACAAT
66 TAGTAATTTCACAAT
* * * * * * * *
84154853 CGATGGTATTTCT-GTAATTTTATAAATTGGGGGTATTTCGACAATTTTACAAATCGAGGTTATT
1 CAAGGGTATTT-TGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATTGAGGGTATT
84154917 TTAGTAATTTC
65 TTAGTAATTTC
84154928 TCTTTATTAT
Statistics
Matches: 273, Mismatches: 36, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
80 135 0.49
81 136 0.50
82 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATTGAGGGTATTT
TAGTAATTTCACAAT
Found at i:84154807 original size:80 final size:80
Alignment explanation
Indices: 84154533--84154927 Score: 451
Period size: 80 Copynumber: 4.9 Consensus size: 80
84154523 TTACACTACA
*
84154533 AGGGTATTTTGATAATTTTACAAA-CTGAGGGTGTTTCGATAATTTTACAAATTGAGGGTATTTT
1 AGGGTATTTTGATAATTTTACAAATC-GAGGGTATTTCG-TAATTTTACAAATTGAGGGTATTTT
* *
84154597 -GATAATTTTACAAATCA
64 AG-TAATTTCACAAATCG
* * * * * **
84154614 AGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATTGAAGGTGTTCCA
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATTGAGGGTATTTTA
*
84154679 GTAATTTTACAAATCG
65 GTAATTTCACAAATCG
* *
84154695 -GGGATATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATTGAGGGTATTTT
1 AGGG-TATTTTGATAATTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATTGAGGGTATTTT
84154759 AGTAATTTCAC-AATCG
64 AGTAATTTCACAAATCG
* * * *
84154775 AGGGTATTTTGATAATTTTACGAATCGGGGGTATTTCGGTAATTTTATAAATTAAGGGTATTTTA
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATTGAGGGTATTTTA
84154840 GTAATTTCAC-AATCG
65 GTAATTTCACAAATCG
* * * * * * *
84154855 ATGGTATTTCTG-TAATTTTATAAATTGGGGGTATTTCGACAATTTTACAAATCGAGGTTATTTT
1 AGGGTATTT-TGATAATTTTACAAATCGAGGGTATTTCG-TAATTTTACAAATTGAGGGTATTTT
84154919 AGTAATTTC
64 AGTAATTTC
84154928 TCTTTATTAT
Statistics
Matches: 275, Mismatches: 32, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
79 1 0.00
80 136 0.49
81 135 0.49
82 3 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCGTAATTTTACAAATTGAGGGTATTTTAG
TAATTTCACAAATCG
Found at i:84156650 original size:13 final size:13
Alignment explanation
Indices: 84156632--84156660 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
84156622 CTTTATTTAA
84156632 TTAGTTAATTAGT
1 TTAGTTAATTAGT
84156645 TTAGTTAATTAGT
1 TTAGTTAATTAGT
84156658 TTA
1 TTA
84156661 ATAAACAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:84162148 original size:20 final size:20
Alignment explanation
Indices: 84162123--84162160 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
84162113 AATCCTCTTA
84162123 TCTTTTTATTTTTATTTTTT
1 TCTTTTTATTTTTATTTTTT
*
84162143 TCTTTTTCTTTTTATTTT
1 TCTTTTTATTTTTATTTT
84162161 CATTTCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (20 bp):
TCTTTTTATTTTTATTTTTT
Found at i:84163974 original size:22 final size:22
Alignment explanation
Indices: 84163949--84163992 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
84163939 AGAAAAAGAA
84163949 AACCATTGAAGCCTTTGAAGTT
1 AACCATTGAAGCCTTTGAAGTT
84163971 AACCATTGAAGCCTTTGAAGTT
1 AACCATTGAAGCCTTTGAAGTT
84163993 CAGCACTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (22 bp):
AACCATTGAAGCCTTTGAAGTT
Found at i:84166465 original size:20 final size:21
Alignment explanation
Indices: 84166440--84166478 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
84166430 TCGAATGTAC
84166440 TTTTCATATACA-CATATAAT
1 TTTTCATATACATCATATAAT
*
84166460 TTTTCATTTACATCATATA
1 TTTTCATATACATCATATA
84166479 TGATTTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTCATATACATCATATAAT
Found at i:84166718 original size:43 final size:42
Alignment explanation
Indices: 84166660--84166802 Score: 139
Period size: 43 Copynumber: 3.4 Consensus size: 42
84166650 ATGCCAACGC
* * *
84166660 CCCAGACGTGATCTTACATGCTATCACATATCGATGCCACTGT
1 CCCAGACATGGTCTTACACG-TATCACATATCGATGCCACTGT
* * * *
84166703 CCCAGACAAGGTCTTACACGAATTAAATA-CGATGCCGA-TGT
1 CCCAGACATGGTCTTACACGTATCACATATCGATGCC-ACTGT
* *
84166744 CCCAGACATGATCTTACACGTAATCACATATCGATGTCAAC-GT
1 CCCAGACATGGTCTTACACGT-ATCACATATCGATG-CCACTGT
*
84166787 CCCAGACGTGGTCTTA
1 CCCAGACATGGTCTTA
84166803 ATTGAGAACA
Statistics
Matches: 80, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
41 28 0.35
42 13 0.16
43 38 0.47
44 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (42 bp):
CCCAGACATGGTCTTACACGTATCACATATCGATGCCACTGT
Found at i:84167510 original size:26 final size:25
Alignment explanation
Indices: 84167452--84167510 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 25
84167442 CTAACATCAT
* *
84167452 AAAACTC-AATTATTCATCAATTAA
1 AAAACTCAAAGTATTCATCAAATAA
*
84167476 ATAACTCAAAGTATTCATCAAAATAA
1 AAAACTCAAAGTATTCATC-AAATAA
*
84167502 AAAATTCAA
1 AAAACTCAA
84167511 GCATGGGCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 6 0.21
25 10 0.36
26 12 0.43
ACGTcount: A:0.54, C:0.15, G:0.02, T:0.29
Consensus pattern (25 bp):
AAAACTCAAAGTATTCATCAAATAA
Found at i:84169074 original size:23 final size:22
Alignment explanation
Indices: 84169035--84169080 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
84169025 ATATATATTT
84169035 TAATAAACATTAGTTATGTATA
1 TAATAAACATTAGTTATGTATA
* * *
84169057 TAATAATATATTATTTATTTATA
1 TAATAA-ACATTAGTTATGTATA
84169080 T
1 T
84169081 CATTTGTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (22 bp):
TAATAAACATTAGTTATGTATA
Found at i:84169130 original size:5 final size:5
Alignment explanation
Indices: 84169091--84169328 Score: 60
Period size: 5 Copynumber: 48.0 Consensus size: 5
84169081 CATTTGTAAC
* *
84169091 ATTAT A-TAT A-TAT ATTTT ATTAT ATGT-T A-TAT ATTTT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT AT-TAT ATTAT ATTAT ATTAT ATTAT
* * * * * *
84169138 -TTAT -TT-C ATTAT A-T-T CTTAT ATGTAA AATATT TTTAC ATTATT
1 ATTAT ATTAT ATTAT ATTAT ATTAT AT-TAT ATTA-T ATTAT ATTA-T
*
84169181 ATTATT ATTAT A-CAT ATTTCAT ATTAT ATT-T CATTAT ATT-T ATT-T
1 ATTA-T ATTAT ATTAT A-TT-AT ATTAT ATTAT -ATTAT ATTAT ATTAT
* * * * * *
84169226 ATGTAT -TTTT ATTACAT ATTAT ATTTT ACTAT -CTAT CATAAT ATTTT
1 AT-TAT ATTAT ATT--AT ATTAT ATTAT ATTAT ATTAT -ATTAT ATTAT
* * *
84169273 TTATAT ATTAT ATTAT A-TAT ATTATT ATATAT TTTAT ATTAT ATAAT
1 AT-TAT ATTAT ATTAT ATTAT ATTA-T AT-TAT ATTAT ATTAT ATTAT
84169320 -TTAT ATTAT
1 ATTAT ATTAT
84169329 TATATATTTT
Statistics
Matches: 171, Mismatches: 34, Indels: 56
0.66 0.13 0.21
Matches are distributed among these distances:
3 2 0.01
4 44 0.26
5 86 0.50
6 30 0.18
7 9 0.05
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:84169132 original size:12 final size:12
Alignment explanation
Indices: 84169099--84169338 Score: 76
Period size: 12 Copynumber: 19.8 Consensus size: 12
84169089 ACATTATATA
84169099 TATATATTTTAT
1 TATATATTTTAT
*
84169111 TATATGTTATATAT
1 TATATATT-T-TAT
*
84169125 T-T-TATTATAT
1 TATATATTTTAT
* *
84169135 TATTTATTTCAT
1 TATATATTTTAT
84169147 TATAT-TCTTATAT
1 TATATAT-TT-TAT
*
84169160 GTAAAATATTTTTACAT
1 -T-ATATA-TTTT--AT
84169177 TAT-TATTATTAT
1 TATATATT-TTAT
*
84169189 TATACATATTTCA-
1 TAT--ATATTTTAT
*
84169202 TATTATATTTCAT
1 TA-TATATTTTAT
*
84169215 TATAT-TTAT-T
1 TATATATTTTAT
*
84169225 TATGTATTTTTAT
1 TATATA-TTTTAT
* *
84169238 TACATATTATAT
1 TATATATTTTAT
* *
84169250 TTTACTA-TCTAT
1 TATA-TATTTTAT
*
84169262 CATAATATTTT-T
1 TAT-ATATTTTAT
*
84169274 TATATATTATAT
1 TATATATTTTAT
*
84169286 TATATATATTAT
1 TATATATTTTAT
84169298 TATATATTTTA-
1 TATATATTTTAT
* *
84169309 TAT-TATATAAT
1 TATATATTTTAT
84169320 T-TATA--TTAT
1 TATATATTTTAT
84169329 TATATATTTT
1 TATATATTTT
84169339 CATTTGTAAA
Statistics
Matches: 167, Mismatches: 31, Indels: 60
0.65 0.12 0.23
Matches are distributed among these distances:
9 4 0.02
10 19 0.11
11 16 0.10
12 81 0.49
13 20 0.12
14 12 0.07
15 9 0.05
16 3 0.02
17 3 0.02
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (12 bp):
TATATATTTTAT
Found at i:84169137 original size:17 final size:17
Alignment explanation
Indices: 84169091--84169338 Score: 95
Period size: 17 Copynumber: 14.0 Consensus size: 17
84169081 CATTTGTAAC
84169091 ATTATATATATATATTTT
1 ATTATAT-TATATATTTT
84169109 ATTATATGTTATATATTTT
1 ATTATA--TTATATATTTT
* *
84169128 ATTATATTATTTATTTC
1 ATTATATTATATATTTT
* *
84169145 ATTATATTCT-TATATGT
1 ATTATATTATATAT-TTT
** * *
84169162 AAAATATTTTTACATTATT
1 ATTATA-TTATATATT-TT
84169181 ATTATTATTATACATATTTCAT
1 ATTA-TATTAT--ATATTT--T
84169203 ATTATATT-TCATTATATTT
1 ATTATATTAT-A-TAT-TTT
*
84169222 ATT-TA-TGTAT-TTTT
1 ATTATATTATATATTTT
*
84169236 ATTACA-TATTATATTTT
1 ATTATATTA-TATATTTT
* *
84169253 ACTATCTATCATAATATTTT
1 A-T-TATATTAT-ATATTTT
*
84169273 -TTATA-TAT-TATATT
1 ATTATATTATATATTTT
*
84169287 ATATATATTATTATATATT
1 AT-TATATTA-TATATTTT
*
84169306 -TTATATTATATAATTT
1 ATTATATTATATATTTT
84169322 A-TATTATTATATATTTT
1 ATTA-TATTATATATTTT
84169339 CATTTGTAAA
Statistics
Matches: 177, Mismatches: 25, Indels: 57
0.68 0.10 0.22
Matches are distributed among these distances:
14 11 0.06
15 4 0.02
16 21 0.12
17 54 0.31
18 17 0.10
19 39 0.22
20 16 0.09
21 10 0.06
22 5 0.03
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (17 bp):
ATTATATTATATATTTT
Found at i:84169293 original size:14 final size:14
Alignment explanation
Indices: 84169091--84169336 Score: 84
Period size: 14 Copynumber: 17.9 Consensus size: 14
84169081 CATTTGTAAC
84169091 ATTATATATATATAT
1 ATTATATATAT-TAT
* *
84169106 TTTATTATATGTTAT
1 ATTA-TATATATTAT
*
84169121 A-TAT-TTTATTAT
1 ATTATATATATTAT
84169133 ATTAT-T-TATT-T
1 ATTATATATATTAT
*
84169144 CATTATAT-TCTTAT
1 -ATTATATATATTAT
*
84169158 ATGTA-AAATATT-T
1 AT-TATATATATTAT
*
84169171 -TTACATTATTATTATT
1 ATTATA-TA-TATTA-T
*
84169187 ATTATACATATTTCAT
1 ATTATATATA-TT-AT
*
84169203 ATTATATTTCATTAT
1 ATTATATAT-ATTAT
*
84169218 ATT-TATTTATGTAT
1 ATTATATATAT-TAT
* *
84169232 -TTTTAT-TA-CAT
1 ATTATATATATTAT
84169243 ATTATAT-T-TTACT
1 ATTATATATATTA-T
84169256 ATCTATCATAATATT-T
1 AT-TAT-AT-ATATTAT
84169272 -TT-TATATATTAT
1 ATTATATATATTAT
84169284 ATTATATATA-T-T
1 ATTATATATATTAT
*
84169296 ATTATATATTTTAT
1 ATTATATATATTAT
84169310 ATTATATA-ATTTAT
1 ATTATATATA-TTAT
84169324 ATTATTATATATT
1 ATTA-TATATATT
84169337 TTCATTTGTA
Statistics
Matches: 179, Mismatches: 18, Indels: 68
0.68 0.07 0.26
Matches are distributed among these distances:
11 10 0.06
12 38 0.21
13 28 0.16
14 50 0.28
15 22 0.12
16 22 0.12
17 7 0.04
18 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (14 bp):
ATTATATATATTAT
Found at i:84169311 original size:31 final size:31
Alignment explanation
Indices: 84169276--84169338 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
84169266 ATATTTTTTA
*
84169276 TATATTATATTATATATATTATTATATATTT
1 TATATTATATAATATATATTATTATATATTT
*
84169307 TATATTATATAATTTATATTATTATATATTT
1 TATATTATATAATATATATTATTATATATTT
84169338 T
1 T
84169339 CATTTGTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (31 bp):
TATATTATATAATATATATTATTATATATTT
Found at i:84171628 original size:39 final size:40
Alignment explanation
Indices: 84171551--84171697 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
84171541 TAGCTCCTCG
* * *
84171551 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
84171591 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
84171630 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
84171670 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
84171698 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:84171708 original size:80 final size:80
Alignment explanation
Indices: 84171597--84171777 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
84171587 CTCATTCAAT
* * *
84171597 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
84171660 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
84171676 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
84171740 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
84171757 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
84171778 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:84171737 original size:40 final size:40
Alignment explanation
Indices: 84171594--84171777 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
84171584 TAACTCATTC
* *
84171594 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
84171634 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
84171674 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
84171714 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
84171755 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
84171778 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:84179435 original size:39 final size:40
Alignment explanation
Indices: 84179358--84179504 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
84179348 TAGCTCCTCG
* * *
84179358 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
84179398 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
84179437 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
84179477 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
84179505 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:84179515 original size:80 final size:80
Alignment explanation
Indices: 84179404--84179584 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
84179394 CTCATTCAAT
* * *
84179404 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
84179467 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
84179483 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
84179547 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
84179564 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
84179585 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:84179544 original size:40 final size:40
Alignment explanation
Indices: 84179401--84179584 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
84179391 TAACTCATTC
* *
84179401 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
84179441 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
84179481 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
84179521 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
84179562 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
84179585 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:84182042 original size:42 final size:42
Alignment explanation
Indices: 84181995--84182093 Score: 171
Period size: 42 Copynumber: 2.4 Consensus size: 42
84181985 GAGATTTGAT
*
84181995 TTCGTGTAAGACCATGTATGAGACATTGGCATCGATATGAGA
1 TTCGTGTAAGACCATGTATGAGACATTAGCATCGATATGAGA
* *
84182037 TTCGTGTAAGACCATGTTTGGGACATTAGCATCGATATGAGA
1 TTCGTGTAAGACCATGTATGAGACATTAGCATCGATATGAGA
84182079 TTCGTGTAAGACCAT
1 TTCGTGTAAGACCAT
84182094 AGTTGGGCTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TTCGTGTAAGACCATGTATGAGACATTAGCATCGATATGAGA
Found at i:84182115 original size:42 final size:40
Alignment explanation
Indices: 84181995--84182116 Score: 163
Period size: 42 Copynumber: 2.9 Consensus size: 40
84181985 GAGATTTGAT
*
84181995 TTCGTGTAAGACCATGTATGAGACATTGGCATCGATATGAGA
1 TTCGTGTAAGACCATGT-TG-GGCATTGGCATCGATATGAGA
*
84182037 TTCGTGTAAGACCATGTTTGGGACATTAGCATCGATATGAGA
1 TTCGTGTAAGACCATG-TTGGG-CATTGGCATCGATATGAGA
*
84182079 TTCGTGTAAGACCATAGTTGGGCTATTGGCAACGATAT
1 TTCGTGTAAGACCAT-GTTGGGC-ATTGGCATCGATAT
84182117 ACTATAACAT
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
41 2 0.03
42 68 0.94
43 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (40 bp):
TTCGTGTAAGACCATGTTGGGCATTGGCATCGATATGAGA
Found at i:84193272 original size:5 final size:5
Alignment explanation
Indices: 84193262--84193354 Score: 61
Period size: 5 Copynumber: 18.2 Consensus size: 5
84193252 TATGTCTTTC
* *
84193262 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAG AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAAT AAAAT
*
84193309 AAAAAT AAAAT AAAAT AAAAAT AAGACT -AAAT -AAAT -AAAT AAAAT
1 -AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT
84193354 A
1 A
84193355 GGAGGATTCA
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
3 3 0.04
4 10 0.14
5 30 0.42
6 29 0.40
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:84193291 original size:6 final size:6
Alignment explanation
Indices: 84193282--84193332 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
84193272 AATAAAATTG
* * *
84193282 AAATGA AAATAA AAATCA AAA-GA AAATAA AAAT-A AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
84193327 AAATAA
1 AAATAA
84193333 GACTAAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 14 0.36
6 25 0.64
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:84193340 original size:16 final size:16
Alignment explanation
Indices: 84193262--84193354 Score: 84
Period size: 17 Copynumber: 5.7 Consensus size: 16
84193252 TATGTCTTTC
84193262 AAAATAAAAT--AATA
1 AAAATAAAATAAAATA
* *
84193276 AAATTGAAATGAAAATA
1 AAAATAAAAT-AAAATA
*
84193293 AAAATCAAAAGAAAATA
1 AAAAT-AAAATAAAATA
84193310 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
*
84193326 AAAATAAGACT-AAATAA
1 AAAATAA-AATAAAAT-A
84193343 ATAAATAAAATA
1 A-AAATAAAATA
84193355 GGAGGATTCA
Statistics
Matches: 63, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
14 8 0.13
16 21 0.33
17 25 0.40
18 9 0.14
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.19
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:84202584 original size:40 final size:40
Alignment explanation
Indices: 84202527--84202784 Score: 355
Period size: 40 Copynumber: 6.5 Consensus size: 40
84202517 CGGATGGTAA
*
84202527 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
* * *
84202567 CTGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
*
84202607 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
84202647 CCGGGCTAAGTCCCGAAGGCATTTGTCCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
84202687 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
* *
84202727 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
*
84202767 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84202785 TACTTGGTTT
Statistics
Matches: 202, Mismatches: 12, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
39 17 0.08
40 184 0.91
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:84209311 original size:9 final size:9
Alignment explanation
Indices: 84209289--84209336 Score: 51
Period size: 9 Copynumber: 5.0 Consensus size: 9
84209279 TTATTTTATG
84209289 TAAAAGAAA
1 TAAAAGAAA
* *
84209298 GAAAATAAA
1 TAAAAGAAA
84209307 TAAAAGAAA
1 TAAAAGAAA
84209316 TAATAAGGATAA
1 TAA-AA-GA-AA
84209328 TAAAAGAAA
1 TAAAAGAAA
84209337 AGAAGAATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
9 19 0.59
10 4 0.12
11 4 0.12
12 5 0.16
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (9 bp):
TAAAAGAAA
Found at i:84210393 original size:56 final size:56
Alignment explanation
Indices: 84210307--84210426 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
84210297 ACAAGGGATG
84210307 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
84210363 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
84210419 ATGAGCAA
1 ATGGGCAA
84210427 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:84211425 original size:79 final size:79
Alignment explanation
Indices: 84211286--84211509 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 79
84211276 TCGAATGATG
* * * * *
84211286 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
84211349 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
* *
84211366 TCCGGGCTAAGCCCGAAGGCA-TTGATGCGAGTTACTA-AATCTGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTG-TGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
84211429 TGTGCGAGTTACTAAA
64 TGTGCGAGATACTAAA
* * *
84211445 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
84211510 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
78 2 0.02
79 103 0.83
80 19 0.15
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:84211516 original size:40 final size:40
Alignment explanation
Indices: 84211286--84211509 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
84211276 TCGAATGATG
* * * *
84211286 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
84211326 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
84211366 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
* *
84211405 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84211445 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
84211485 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84211510 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 3 0.02
39 64 0.40
40 83 0.52
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84211539 original size:79 final size:79
Alignment explanation
Indices: 84211325--84211542 Score: 230
Period size: 79 Copynumber: 2.8 Consensus size: 79
84211315 AAGTGACCAT
* ** * * * *
84211325 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATT
84211389 GATGCGAGTTACTAA
65 GATGCGAGTTACTAA
* * **
84211404 ATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCA-TT
84211469 G-TGCGAGTTACTATA
65 GATGCGAGTTACTA-A
* * *
84211484 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTT-AAGTCCGAAGG
84211543 TACGTGATTT
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 7 0.06
79 108 0.90
80 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTG
ATGCGAGTTACTAA
Found at i:84213568 original size:40 final size:40
Alignment explanation
Indices: 84213513--84213730 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
84213503 CGGATGGTAA
* *
84213513 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
84213553 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
84213593 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
84213633 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
84213673 CCGGGCTAAGTCTCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
84213713 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84213731 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84216766 original size:55 final size:55
Alignment explanation
Indices: 84216633--84216776 Score: 162
Period size: 55 Copynumber: 2.6 Consensus size: 55
84216623 TATGAAGGTC
* * ** *
84216633 CACGCTCGTGTTGTTTTGGCAGGTTCGCCCAAGGTTGCTTGGCACGGGCGTGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCATGGTTGCAAGGCACGGGCATGTCG
* * ** * * *
84216688 CATGCCCATGTTAATTTGACAGGTTCGGCCATGGTTTCAAGGCACGGGCATGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCATGGTTGCAAGGCACGGGCATGTCG
* *
84216743 CACGTCGGTGTTGTTTTGGCAGGTTCGCCCATGG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCATGG
84216777 CCATGTTGCA
Statistics
Matches: 69, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
55 69 1.00
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.29
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGGCAGGTTCGCCCATGGTTGCAAGGCACGGGCATGTCG
Found at i:84224860 original size:24 final size:24
Alignment explanation
Indices: 84224833--84224883 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
84224823 TATAACTGTG
*
84224833 ATAGAATCAGAAACTTTTTAGGGA
1 ATAGAATCAGAAACCTTTTAGGGA
* *
84224857 ATAGAATTAGAAACCTTTTGGGGA
1 ATAGAATCAGAAACCTTTTAGGGA
84224881 ATA
1 ATA
84224884 TATAAGGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAGAATCAGAAACCTTTTAGGGA
Found at i:84225009 original size:22 final size:23
Alignment explanation
Indices: 84224955--84225006 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
84224945 TATAAAGCCT
84224955 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAAGAAA
* *
84224977 AATAAAAAGTAGTCTTAAAGTAG
1 AATAAAAAGTAGTCTTAAAGAAA
84225000 AATAAAA
1 AATAAAA
84225007 GTAAAAACGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.63, C:0.04, G:0.12, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:84236395 original size:31 final size:31
Alignment explanation
Indices: 84236350--84236433 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
84236340 TTAGTCTTGA
*
84236350 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
84236380 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
*
84236411 CATATCACTAGGCCAAAGCCTTT
1 CATATCACTAGGCCGAAGCCTTT
84236434 ACTGTAAATG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTTCATAAAT
Done.