Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 255 of 311
Found at i:85058349 original size:13 final size:13
Alignment explanation
Indices: 85058331--85058357 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
85058321 ACTCTTTGGC
85058331 TACTCTTTTTCCT
1 TACTCTTTTTCCT
85058344 TACTCTTTTTCCT
1 TACTCTTTTTCCT
85058357 T
1 T
85058358 TGACTTCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.63
Consensus pattern (13 bp):
TACTCTTTTTCCT
Found at i:85059912 original size:19 final size:19
Alignment explanation
Indices: 85059888--85059926 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
85059878 CATTCATGTC
85059888 AGAAACCAATCAAACTCAT
1 AGAAACCAATCAAACTCAT
85059907 AGAAACCAATCAAACTCAT
1 AGAAACCAATCAAACTCAT
85059926 A
1 A
85059927 CATACTATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.26, G:0.05, T:0.15
Consensus pattern (19 bp):
AGAAACCAATCAAACTCAT
Found at i:85061627 original size:65 final size:62
Alignment explanation
Indices: 85061506--85061717 Score: 172
Period size: 65 Copynumber: 3.2 Consensus size: 62
85061496 GTGCACATTT
* * ** * * *
85061506 CCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAATTTGTATACTCAAAGTGCACATA
1 CCTTTTCAAGT-GTACACA--AAGTATACCTTGCCTTTTCAA-GTGTATACACAAAGTGTACATA
85061571 A
62 A
* * * * * **
85061572 CCTTTTCAAGTGTACATATATAGTGTACCTTGCCTTTTCAAGTGGTGTACACAAAGTATACCTTT
1 CCTTTTCAAGTGTACACA-A-AGTATACCTTGCCTTTTCAAGT-GTATACACAAAGTGTACATAA
* * *
85061637 CCTTTTCATATGGTATACACAAAGTATACCTTTCCTTTTCAAGTGTACACACAAAGTGTACATAA
1 CCTTTTCA-A--GTGTACACAAAGTATACCTTGCCTTTTCAAGTGTATACACAAAGTGTACATAA
85061702 CCTTTTCAAGTTGTAC
1 CCTTTTCAAG-TGTAC
85061718 CATTTGGGTA
Statistics
Matches: 116, Mismatches: 24, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
62 1 0.01
63 4 0.03
64 3 0.03
65 68 0.59
66 32 0.28
67 1 0.01
68 7 0.06
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (62 bp):
CCTTTTCAAGTGTACACAAAGTATACCTTGCCTTTTCAAGTGTATACACAAAGTGTACATAA
Found at i:85061641 original size:33 final size:33
Alignment explanation
Indices: 85061467--85061712 Score: 156
Period size: 33 Copynumber: 7.5 Consensus size: 33
85061457 TTTCCGATGG
* * * * * **
85061467 ACCTTTCCTTTTCTAGTTGTACACTCAAGGTGC
1 ACCTTTCCTTTTCAAGTGGTATACACAAAGTAT
* * * *
85061500 ACATTTCCTTTTCAAGTGGTACACACGAAGTGT
1 ACCTTTCCTTTTCAAGTGGTATACACAAAGTAT
* ** * * * **
85061533 ACATACCCTTTTCAATTTGTATACTCAAAGTGC
1 ACCTTTCCTTTTCAAGTGGTATACACAAAGTAT
* ** * * * * *
85061566 ACATAACCTTTTCAAGT-GTACATATATAGTGT
1 ACCTTTCCTTTTCAAGTGGTATACACAAAGTAT
* *
85061598 ACCTTGCCTTTTCAAGTGGTGTACACAAAGTAT
1 ACCTTTCCTTTTCAAGTGGTATACACAAAGTAT
85061631 ACCTTTCCTTTTCATA-TGGTATACACAAAGTAT
1 ACCTTTCCTTTTCA-AGTGGTATACACAAAGTAT
* *
85061664 ACCTTTCCTTTTCAAGT-GTACACACAAAGTGT
1 ACCTTTCCTTTTCAAGTGGTATACACAAAGTAT
* **
85061696 ACATAACCTTTTCAAGT
1 ACCTTTCCTTTTCAAGT
85061713 TGTACCATTT
Statistics
Matches: 171, Mismatches: 39, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
32 51 0.30
33 119 0.70
34 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.36
Consensus pattern (33 bp):
ACCTTTCCTTTTCAAGTGGTATACACAAAGTAT
Found at i:85061641 original size:98 final size:98
Alignment explanation
Indices: 85061473--85061717 Score: 222
Period size: 98 Copynumber: 2.5 Consensus size: 98
85061463 ATGGACCTTT
* * * * ** * *
85061473 CCTTTTCTAGTTGTACACTCAAGGTGCACATTTCCTTTTCAAGTGGTACACACGAAGTGTACATA
1 CCTTTTCAAG-TGTACACACAAAGTGTACATAACCTTTTCAAGTGGTACACACAAAGTATACATA
* * *
85061538 CCCTTTTCA-ATTTGTATACTCAAAGTGCACATAA
65 CCCTTTTCATA-TGGTATACACAAAGTACACATAA
* * * * ** ** * **
85061572 CCTTTTCAAGTGTACATATATAGTGTACCTTGCCTTTTCAAGTGGTGTACACAAAGTATACCTTT
1 CCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAGTGGTACACACAAAGTATACATAC
* * **
85061637 CCTTTTCATATGGTATACACAAAGTATACCTTT
66 CCTTTTCATATGGTATACACAAAGTACACATAA
*
85061670 CCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAGTTGTAC
1 CCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAGTGGTAC
85061718 CATTTGGGTA
Statistics
Matches: 113, Mismatches: 32, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
98 103 0.91
99 10 0.09
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (98 bp):
CCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAGTGGTACACACAAAGTATACATAC
CCTTTTCATATGGTATACACAAAGTACACATAA
Found at i:85062440 original size:20 final size:22
Alignment explanation
Indices: 85062398--85062445 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
85062388 TGTAAAAGTG
*
85062398 ATTTATCTATCAATAATCTTTC
1 ATTTATCTATCAATAAACTTTC
85062420 ATTT-TCTATCAA-AAACTTTC
1 ATTTATCTATCAATAAACTTTC
85062440 AATTTA
1 -ATTTA
85062446 CAGCATATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 7 0.30
21 12 0.52
22 4 0.17
ACGTcount: A:0.35, C:0.17, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTATCTATCAATAAACTTTC
Found at i:85062915 original size:13 final size:13
Alignment explanation
Indices: 85062897--85062922 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85062887 GCACATAATT
85062897 GATAAAATTTTTC
1 GATAAAATTTTTC
85062910 GATAAAATTTTTC
1 GATAAAATTTTTC
85062923 ATGCAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
GATAAAATTTTTC
Found at i:85068466 original size:16 final size:16
Alignment explanation
Indices: 85068445--85068480 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
85068435 TTTGGTTCGC
85068445 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
85068461 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
85068477 TGTA
1 TGTA
85068481 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:85068738 original size:18 final size:17
Alignment explanation
Indices: 85068717--85068751 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
85068707 TTATTATTTA
*
85068717 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
85068735 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
85068752 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:85068745 original size:28 final size:27
Alignment explanation
Indices: 85068675--85068747 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
85068665 TTTATTATCA
*
85068675 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
85068703 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
85068730 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
85068748 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:85068885 original size:18 final size:17
Alignment explanation
Indices: 85068864--85068898 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
85068854 TTATTATTAA
*
85068864 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
85068882 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
85068899 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:85068910 original size:147 final size:149
Alignment explanation
Indices: 85068636--85068910 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
85068626 ATGATTATTG
*
85068636 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
85068701 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
85068766 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
*
85068785 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
85068848 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
85068911 ATATTCTTAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 95 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:85068942 original size:54 final size:54
Alignment explanation
Indices: 85068884--85069062 Score: 119
Period size: 55 Copynumber: 3.1 Consensus size: 54
85068874 ATTAAAATAT
*
85068884 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
85068938 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
85069001 TAT
53 -AC
* *
85069004 ATAATTTATTAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
85069058 ATAAT
1 ATAAT
85069063 ATATGATACT
Statistics
Matches: 90, Mismatches: 19, Indels: 32
0.64 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.06
59 11 0.12
61 11 0.12
62 4 0.04
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.06
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:85069005 original size:18 final size:17
Alignment explanation
Indices: 85068984--85069018 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
85068974 TTATTATTAA
85068984 ATATAATATAATTAAAAT
1 ATATAAT-TAATTAAAAT
*
85069002 ATATAATTTATTAAAAT
1 ATATAATTAATTAAAAT
85069019 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATAATTAATTAAAAT
Found at i:85069133 original size:18 final size:17
Alignment explanation
Indices: 85069094--85069125 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
85069084 TTTTAAATAA
85069094 TTAATATTAAATATATT
1 TTAATATTAAATATATT
85069111 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
85069126 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:85069150 original size:120 final size:120
Alignment explanation
Indices: 85068847--85069139 Score: 473
Period size: 120 Copynumber: 2.4 Consensus size: 120
85068837 ATCATATTTA
85068847 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
85068912 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
* * *
85068967 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTATTAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
85069032 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA--AT
* * *
85069088 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
85069140 TAAAATAATT
Statistics
Matches: 159, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
119 3 0.02
120 153 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
Found at i:85072404 original size:33 final size:32
Alignment explanation
Indices: 85072367--85072519 Score: 128
Period size: 33 Copynumber: 4.7 Consensus size: 32
85072357 TACCCAAATG
** *
85072367 GTACAGCTTGAAAAGGTTATGTACACTTTGTGT
1 GTACA-CTTGAAAAGGAAAGGTACACTTTGTGT
*
85072400 GTACACTTGAAAAGGAAAGGTATACTTTGTGT
1 GTACACTTGAAAAGGAAAGGTACACTTTGTGT
* * *
85072432 ATAC-CATATGAAAAGGATAGGTATACTTTGTGT
1 GTACAC-T-TGAAAAGGAAAGGTACACTTTGTGT
* * * * * *
85072465 ATACCATTTGAAAAGGGAATGTACACCTTGAGT
1 GTA-CACTTGAAAAGGAAAGGTACACTTTGTGT
*
85072498 GTACAACTAGAAAAGGAAAGGT
1 GTAC-ACTTGAAAAGGAAAGGT
85072520 TCATCGGAAA
Statistics
Matches: 97, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
31 1 0.01
32 28 0.29
33 66 0.68
34 2 0.02
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (32 bp):
GTACACTTGAAAAGGAAAGGTACACTTTGTGT
Found at i:85073826 original size:17 final size:17
Alignment explanation
Indices: 85073804--85073839 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
85073794 GTGTTACATC
85073804 ATTGGTACCACATTTCT
1 ATTGGTACCACATTTCT
85073821 ATTGGTACCACATTTCT
1 ATTGGTACCACATTTCT
85073838 AT
1 AT
85073840 CATCAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (17 bp):
ATTGGTACCACATTTCT
Found at i:85075605 original size:12 final size:13
Alignment explanation
Indices: 85075582--85075614 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
85075572 TGCGTCTGTT
85075582 TCTTTATTCTTTC
1 TCTTTATTCTTTC
*
85075595 TCTTT-TTCTTTT
1 TCTTTATTCTTTC
85075607 TCTTTATT
1 TCTTTATT
85075615 TCATTTACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (13 bp):
TCTTTATTCTTTC
Found at i:85075679 original size:22 final size:22
Alignment explanation
Indices: 85075637--85075680 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
85075627 TCATTTGTTT
* *
85075637 TATTATAATTACTTTATTATTA
1 TATTATAATTACTTAAATATTA
85075659 TATTAT-ATATACTTAAATATTA
1 TATTATAAT-TACTTAAATATTA
85075681 AGTAAAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTATAATTACTTAAATATTA
Found at i:85085162 original size:40 final size:40
Alignment explanation
Indices: 85085078--85085261 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
85085068 TTGAATGCTG
* * * *
85085078 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
85085117 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
85085158 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
85085198 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
85085238 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
85085262 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:85085215 original size:80 final size:81
Alignment explanation
Indices: 85085078--85085258 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
85085068 TTGAATGCTG
* * *
85085078 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
85085142 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
85085158 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
85085219 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
85085238 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
85085259 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:85085282 original size:39 final size:38
Alignment explanation
Indices: 85085159--85085308 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
85085149 GTTATTAATT
* ** * *
85085159 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
85085199 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
85085238 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
85085278 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
85085309 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:85091133 original size:53 final size:53
Alignment explanation
Indices: 85090977--85091142 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
85090967 GACGAAAAAT
* **
85090977 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
85091029 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
85091082 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
85091136 TATGTGA
1 -ATGTGA
85091143 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:85098217 original size:53 final size:53
Alignment explanation
Indices: 85098061--85098226 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
85098051 GACGAAAAAT
* **
85098061 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
85098113 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
85098166 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
85098220 TATGTGA
1 -ATGTGA
85098227 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:85101087 original size:20 final size:20
Alignment explanation
Indices: 85101041--85101087 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
85101031 AACTTTTCTT
* *
85101041 TATTTTTCATAATATTTGAA
1 TATTTTTAATAAAATTTGAA
*
85101061 TAATTTTAATAAAATTT-ATA
1 TATTTTTAATAAAATTTGA-A
85101081 TATTTTT
1 TATTTTT
85101088 CTAAAAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
TATTTTTAATAAAATTTGAA
Found at i:85101160 original size:10 final size:11
Alignment explanation
Indices: 85101104--85101162 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
85101094 AAATCATGAC
*
85101104 TTCTAAAATTT
1 TTCTATAATTT
* *
85101115 TTCTGTACTTT
1 TTCTATAATTT
*
85101126 TTTTATAATTT
1 TTCTATAATTT
*
85101137 TT-AATAATTCT
1 TTCTATAATT-T
85101148 TTCTAT-ATTT
1 TTCTATAATTT
85101158 TTCTA
1 TTCTA
85101163 AAAAATAATA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
10 12 0.32
11 24 0.63
12 2 0.05
ACGTcount: A:0.25, C:0.10, G:0.02, T:0.63
Consensus pattern (11 bp):
TTCTATAATTT
Found at i:85101172 original size:30 final size:31
Alignment explanation
Indices: 85101138--85101196 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
85101128 TTATAATTTT
85101138 TAATAAT-TCTTTCTATATTTTTCTAAAAAA
1 TAATAATGTCTTTCTATATTTTTCTAAAAAA
*
85101168 TAATAATGTTTTTCTATATTTTTCTAAAA
1 TAATAATGTCTTTCTATATTTTTCTAAAA
85101197 CTTTTTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.53
Consensus pattern (31 bp):
TAATAATGTCTTTCTATATTTTTCTAAAAAA
Found at i:85105851 original size:19 final size:20
Alignment explanation
Indices: 85105823--85105861 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
85105813 TCCCATTATT
85105823 TATTTATTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
*
85105842 TATTTGTTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
85105862 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:85105879 original size:25 final size:23
Alignment explanation
Indices: 85105842--85105887 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
85105832 TTTGTTTTAA
*
85105842 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
85105865 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
85105888 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:85107166 original size:29 final size:30
Alignment explanation
Indices: 85107134--85107208 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 30
85107124 ATTTGAATGC
*
85107134 TTAATTAAAATTTTTAA-ATTTT-TGTGAAA
1 TTAATTAAAATTTTTAATATTTTAAGTG-AA
*
85107163 TTAA-TAAGAATTTTTTAATATTTTAAGTGAG
1 TTAATTAA-AA-TTTTTAATATTTTAAGTGAA
85107194 TATAATTAAAATTTT
1 T-TAATTAAAATTTT
85107209 CAAAAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
28 3 0.08
29 6 0.16
30 7 0.18
31 11 0.29
32 8 0.21
33 3 0.08
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (30 bp):
TTAATTAAAATTTTTAATATTTTAAGTGAA
Found at i:85107331 original size:40 final size:39
Alignment explanation
Indices: 85107282--85107373 Score: 94
Period size: 41 Copynumber: 2.3 Consensus size: 39
85107272 GATTATGCAT
* * *
85107282 TAGCTGCGTTTGCAACAAAATGCAGCAAAAAACTGAGCAA
1 TAGCGGCGTTTG-AACAAAACGCAACAAAAAACTGAGCAA
** * *
85107322 TAGCGGCGTTTTTGTTCCAAACGCAACTAAAAACTGAGCAA
1 TAGCGGCG--TTTGAACAAAACGCAACAAAAAACTGAGCAA
85107363 TAGCGGCGTTT
1 TAGCGGCGTTT
85107374 CTGGTCCAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
39 3 0.07
40 7 0.16
41 29 0.67
42 4 0.09
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (39 bp):
TAGCGGCGTTTGAACAAAACGCAACAAAAAACTGAGCAA
Found at i:85107355 original size:41 final size:41
Alignment explanation
Indices: 85107309--85107549 Score: 218
Period size: 41 Copynumber: 5.9 Consensus size: 41
85107299 AAATGCAGCA
* *
85107309 AAAAACTGAGCAATAGCGGCGTTTTTGTTCCAAACGCAACT
1 AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACT
* *
85107350 AAAAACTGAGCAATAGCGGCGTTTCTGGTCCAAACACCACT
1 AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACT
** * * **
85107391 AAAAACTGAGTTATATCGGCCTTTTTGGTCCAAACGCTGCT
1 AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACT
* * * * *
85107432 TAAAACTTAGAAATGGCGACGTTTTT-GTCCAAACGCCACT
1 AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACT
* * * *
85107472 AAAAACT-AGGCAATAGCGGTGTTTTTGTTACAAACGCCGC-
1 AAAAACTGA-GCAATAGCGGCGTTTTTGGTCCAAACGCCACT
* * * * * *
85107512 AAAAATTTGATCTATAGCAGTGTTTTTTGTCCAAACGC
1 AAAAA-CTGAGCAATAGCGGCGTTTTTGGTCCAAACGC
85107550 TGCAAAAAGT
Statistics
Matches: 159, Mismatches: 37, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
39 1 0.01
40 36 0.23
41 121 0.76
42 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (41 bp):
AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACT
Found at i:85107538 original size:122 final size:123
Alignment explanation
Indices: 85107310--85107552 Score: 278
Period size: 122 Copynumber: 2.0 Consensus size: 123
85107300 AATGCAGCAA
* *
85107310 AAAACTGAGCAATAGCGGCGTTTTTGTTCCAAACGCAACTAAAAACTGAGCAATAGCGGCGTTTC
1 AAAACTGAGAAATAGCGACGTTTTTGTTCCAAACGCAACTAAAAACTGAGCAATAGCGGCGTTTC
* * *
85107375 TGGTCCAAACACCACTAAAAACTGAGTTATATCGGCCTTTTTGGTCCAAACGCTGCTT
66 TGGTACAAACACCACTAAAAACTGAGTTATAGCAGCCTTTTTGGTCCAAACGCTGCTT
* * * *
85107433 AAAACTTAGAAATGGCGACGTTTTTG-TCCAAACGCCACTAAAAACT-AGGCAATAGCGGTGTTT
1 AAAACTGAGAAATAGCGACGTTTTTGTTCCAAACGCAACTAAAAACTGA-GCAATAGCGGCGTTT
* * * * * ** *
85107496 TTGTTACAAACGCCGC-AAAAATTTGA-TCTATAGCAGTGTTTTTTGTCCAAACGCTGC
65 CTGGTACAAACACCACTAAAAA-CTGAGT-TATAGCAGCCTTTTTGGTCCAAACGCTGC
85107553 AAAAAGTTGA
Statistics
Matches: 100, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
121 7 0.07
122 71 0.71
123 22 0.22
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (123 bp):
AAAACTGAGAAATAGCGACGTTTTTGTTCCAAACGCAACTAAAAACTGAGCAATAGCGGCGTTTC
TGGTACAAACACCACTAAAAACTGAGTTATAGCAGCCTTTTTGGTCCAAACGCTGCTT
Found at i:85107555 original size:41 final size:41
Alignment explanation
Indices: 85107484--85107562 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
85107474 AAACTAGGCA
* *
85107484 ATAGCGGTGTTTTTGTTACAAACGCCGCAAAAATTTGATCT
1 ATAGCAGTGTTTTTGTTACAAACGCCGCAAAAAGTTGATCT
* *
85107525 ATAGCAGTGTTTTT-TGTCCAAACGCTGCAAAAAGTTGA
1 ATAGCAGTGTTTTTGT-TACAAACGCCGCAAAAAGTTGA
85107563 GTAGCCATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 1 0.03
41 32 0.97
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (41 bp):
ATAGCAGTGTTTTTGTTACAAACGCCGCAAAAAGTTGATCT
Found at i:85108088 original size:15 final size:16
Alignment explanation
Indices: 85108059--85108099 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
85108049 TAATATGTAA
85108059 GGTTTAAGG--TTTAT
1 GGTTTAAGGTTTTTAT
85108073 GGTTT-AGGTTTTTAT
1 GGTTTAAGGTTTTTAT
85108088 GGTTTAAGGTTT
1 GGTTTAAGGTTT
85108100 AATGGTCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 3 0.12
14 5 0.21
15 10 0.42
16 6 0.25
ACGTcount: A:0.17, C:0.00, G:0.29, T:0.54
Consensus pattern (16 bp):
GGTTTAAGGTTTTTAT
Found at i:85108104 original size:15 final size:14
Alignment explanation
Indices: 85108059--85108105 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 14
85108049 TAATATGTAA
85108059 GGTTTAAGGTTTAT
1 GGTTTAAGGTTTAT
85108073 GGTTT-AGGTTTTTAT
1 GGTTTAAGG--TTTAT
85108088 GGTTTAAGGTTTAAT
1 GGTTTAAGGTTT-AT
85108103 GGT
1 GGT
85108106 CATCATGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 8 0.28
15 15 0.52
16 3 0.10
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.51
Consensus pattern (14 bp):
GGTTTAAGGTTTAT
Found at i:85108213 original size:15 final size:15
Alignment explanation
Indices: 85108179--85108228 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
85108169 TTATTGTTTG
85108179 GGGTTTAAAGT-TTA
1 GGGTTTAAAGTATTA
85108193 GGGTTTAAAGTATTA
1 GGGTTTAAAGTATTA
* *
85108208 GTGTTTAGAGTATTA
1 GGGTTTAAAGTATTA
*
85108223 TGGTTT
1 GGGTTT
85108229 TAGGTAAGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 11 0.35
15 20 0.65
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (15 bp):
GGGTTTAAAGTATTA
Found at i:85108404 original size:21 final size:20
Alignment explanation
Indices: 85108375--85108453 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 20
85108365 AAGTTTAGGG
*
85108375 TATTAGGTTTAAGGTTTAGTC
1 TATT-GGTTTAGGGTTTAGTC
* *
85108396 TATATGGTTGAGGGTTTA-TGG
1 TAT-TGGTTTAGGGTTTAGT-C
85108417 TATTTGGGTTTAGGGTTTAGTC
1 TA-TT-GGTTTAGGGTTTAGTC
85108439 TATTGAGTTTAGGGT
1 TATTG-GTTTAGGGT
85108454 CTAAAAAATT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
20 2 0.04
21 28 0.60
22 16 0.34
23 1 0.02
ACGTcount: A:0.19, C:0.03, G:0.32, T:0.47
Consensus pattern (20 bp):
TATTGGTTTAGGGTTTAGTC
Found at i:85108979 original size:123 final size:123
Alignment explanation
Indices: 85108618--85108992 Score: 475
Period size: 123 Copynumber: 3.1 Consensus size: 123
85108608 AACGCCGTCG
* * * * * *
85108618 TTAGCGGCACTTAGTAAAAAATGCAG-TAAAAAATATGAGAAATTAAATGAAAACGACATCGTTT
1 TTAGCAGCACTTATTAAAAAACGCCGCT-AAAAATATGAGAAATTGAATGAAAACGACGTCGTTT
* * * * *
85108682 TGAGTGGCGGGGTAGTGGAATTAGCGGCGCTAGGTCATAAACGCCGCAATAGATTAGTA
65 TAAGTGGCAGGGTAGTGGAATTAGCGGCGCTAGGTTATAAACGCCGCAATAGATAAGAA
* * * *
85108741 TTAGCGGCGCTTATTAAAAAAGGCCGCTAAAAATATGAGAAATTGAATGAAAAC-ACGTCATTTT
1 TTAGCAGCACTTATTAAAAAACGCCGCTAAAAATATGAGAAATTGAATGAAAACGACGTCGTTTT
* * * *
85108805 AAGTGGCAGGGTAGTGGAATTAGCGACACTAGGTTATAAACGCCGCAATAGATCAGCA
66 AAGTGGCAGGGTAGTGGAATTAGCGGCGCTAGGTTATAAACGCCGCAATAGATAAGAA
* *
85108863 TTAGTAGCACTTTTTAAAAAACGCCGCTAAAAATATGAGAAATTGAATGAAAACGACGTCGTTTT
1 TTAGCAGCACTTATTAAAAAACGCCGCTAAAAATATGAGAAATTGAATGAAAACGACGTCGTTTT
** ** * * *
85108928 AAGTGGTTGGGTTTTGGAATTAGTGGCGCTAGGTTATAAATGCTGCAATAGATAAGAA
66 AAGTGGCAGGGTAGTGGAATTAGCGGCGCTAGGTTATAAACGCCGCAATAGATAAGAA
85108986 TTAGCAG
1 TTAGCAG
85108993 TGCTTTTTTA
Statistics
Matches: 218, Mismatches: 32, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
122 108 0.50
123 109 0.50
124 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.26
Consensus pattern (123 bp):
TTAGCAGCACTTATTAAAAAACGCCGCTAAAAATATGAGAAATTGAATGAAAACGACGTCGTTTT
AAGTGGCAGGGTAGTGGAATTAGCGGCGCTAGGTTATAAACGCCGCAATAGATAAGAA
Found at i:85109018 original size:123 final size:123
Alignment explanation
Indices: 85108646--85109011 Score: 482
Period size: 122 Copynumber: 3.0 Consensus size: 123
85108636 AAATGCAGTA
* * * *
85108646 AAAAATATGAGAAATTAAATGAAAACGACATCGTTTTGAGTGGCGGGGTAGTGGAATTAGCGGCG
1 AAAAATATGAGAAATTGAATGAAAACGACGTCGTTTTAAGTGGCAGGGTAGTGGAATTAGCGGCG
* * * * * *
85108711 CTAGGTCATAAACGCCGCAATAGATTAGTATTAGCGGCGCTTATTAAAAAAGGCCGCT
66 CTAGGTTATAAACGCCGCAATAGATAAGAATTAGCAGCGCTTTTTAAAAAACGCCGCT
* * *
85108769 AAAAATATGAGAAATTGAATGAAAAC-ACGTCATTTTAAGTGGCAGGGTAGTGGAATTAGCGACA
1 AAAAATATGAGAAATTGAATGAAAACGACGTCGTTTTAAGTGGCAGGGTAGTGGAATTAGCGGCG
* * * *
85108833 CTAGGTTATAAACGCCGCAATAGATCAGCATTAGTAGCACTTTTTAAAAAACGCCGCT
66 CTAGGTTATAAACGCCGCAATAGATAAGAATTAGCAGCGCTTTTTAAAAAACGCCGCT
** ** *
85108891 AAAAATATGAGAAATTGAATGAAAACGACGTCGTTTTAAGTGGTTGGGTTTTGGAATTAGTGGCG
1 AAAAATATGAGAAATTGAATGAAAACGACGTCGTTTTAAGTGGCAGGGTAGTGGAATTAGCGGCG
* * * *
85108956 CTAGGTTATAAATGCTGCAATAGATAAGAATTAGCAGTGCTTTTTTAAAAGACGCC
66 CTAGGTTATAAACGCCGCAATAGATAAGAATTAGCAGCGC-TTTTTAAAAAACGCC
85109012 ACAAAAAAAA
Statistics
Matches: 210, Mismatches: 31, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
122 108 0.51
123 88 0.42
124 14 0.07
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.26
Consensus pattern (123 bp):
AAAAATATGAGAAATTGAATGAAAACGACGTCGTTTTAAGTGGCAGGGTAGTGGAATTAGCGGCG
CTAGGTTATAAACGCCGCAATAGATAAGAATTAGCAGCGCTTTTTAAAAAACGCCGCT
Found at i:85111705 original size:20 final size:20
Alignment explanation
Indices: 85111668--85111706 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
85111658 AAATAAATTT
*
85111668 AATTCATAAATATATATATA
1 AATTCATAAACATATATATA
85111688 AATTC-TAAACATAT-TATA
1 AATTCATAAACATATATATA
85111706 A
1 A
85111707 CCAAAACACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 8 0.44
20 5 0.28
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTCATAAACATATATATA
Found at i:85111836 original size:8 final size:9
Alignment explanation
Indices: 85111734--85111900 Score: 146
Period size: 9 Copynumber: 18.6 Consensus size: 9
85111724 ATCTAAATTT
85111734 CATAACTTA
1 CATAACTTA
85111743 CATAACTTA
1 CATAACTTA
*
85111752 CATAATTTA
1 CATAACTTA
85111761 CATAACTTA
1 CATAACTTA
85111770 CATAA--TA
1 CATAACTTA
*
85111777 CATAA-ATA
1 CATAACTTA
* * *
85111785 TATATCATA
1 CATAACTTA
*
85111794 TCATAATTTA
1 -CATAACTTA
*
85111804 CATAACTCA
1 CATAACTTA
*
85111813 CACAACTTA
1 CATAACTTA
85111822 CATAACTTA
1 CATAACTTA
85111831 -ATAACTTA
1 CATAACTTA
* *
85111839 TATATATCATA
1 CATA-A-CTTA
85111850 TCATAACTTA
1 -CATAACTTA
*
85111860 CATAACTCA
1 CATAACTTA
*
85111869 CATAACTCA
1 CATAACTTA
85111878 CATAACTTA
1 CATAACTTA
85111887 CA-AGACTTA
1 CATA-ACTTA
85111896 CATAA
1 CATAA
85111901 TACATAAATA
Statistics
Matches: 131, Mismatches: 18, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
7 7 0.05
8 14 0.11
9 93 0.71
10 10 0.08
11 4 0.03
12 3 0.02
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:85111868 original size:56 final size:54
Alignment explanation
Indices: 85111743--85111888 Score: 199
Period size: 56 Copynumber: 2.7 Consensus size: 54
85111733 TCATAACTTA
* *
85111743 CATAACTTACATAATTTACATAACTTACATAA--TACATAAATATATATCATAT
1 CATAACTTACATAACTCACATAACTTACATAACTTACATAAATATATATCATAT
* *
85111795 CATAATTTACATAACTCACACAACTTACATAACTTA-ATAACTTATATATATCATAT
1 CATAACTTACATAACTCACATAACTTACATAACTTACATAA---ATATATATCATAT
*
85111851 CATAACTTACATAACTCACATAACTCACATAACTTACA
1 CATAACTTACATAACTCACATAACTTACATAACTTACA
85111889 AGACTTACAT
Statistics
Matches: 81, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
52 28 0.35
53 4 0.05
54 2 0.02
56 46 0.57
57 1 0.01
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.34
Consensus pattern (54 bp):
CATAACTTACATAACTCACATAACTTACATAACTTACATAAATATATATCATAT
Found at i:85120630 original size:28 final size:28
Alignment explanation
Indices: 85120590--85120647 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
85120580 TTGATAGTGA
85120590 TAGTGATCCCGATATAGACGAGGTCCCC
1 TAGTGATCCCGATATAGACGAGGTCCCC
* *
85120618 TAGTGATCTCGATATGGACGAGGTCCCC
1 TAGTGATCCCGATATAGACGAGGTCCCC
85120646 TA
1 TA
85120648 CGATATTGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (28 bp):
TAGTGATCCCGATATAGACGAGGTCCCC
Found at i:85122563 original size:29 final size:31
Alignment explanation
Indices: 85122516--85122582 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
85122506 TTGCACAAGA
* * * *
85122516 GTAAATACTTAAAATTTGAGGGGCTAA-AGT
1 GTAAATACTGAAAAGTTGAAGGACTAATAGT
*
85122546 GTAAATAC-GAAAAGTTGAAGGATTAATAGT
1 GTAAATACTGAAAAGTTGAAGGACTAATAGT
85122576 GTAAATA
1 GTAAATA
85122583 TTTTAAGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 13 0.42
30 18 0.58
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.28
Consensus pattern (31 bp):
GTAAATACTGAAAAGTTGAAGGACTAATAGT
Found at i:85122810 original size:26 final size:27
Alignment explanation
Indices: 85122779--85122854 Score: 70
Period size: 26 Copynumber: 2.9 Consensus size: 27
85122769 TGACGTTGAT
85122779 GATATTTTATAATTATTA-ATTAGATAA
1 GATATTTTATAATTATTATATTA-ATAA
* *
85122806 -ATATTATT-TTATTATTATTTTAATAA
1 GATATT-TTATAATTATTATATTAATAA
*
85122832 GATATTTTATTATT-TTATTATTA
1 GATATTTTATAATTATTA-TATTA
85122855 TTTATTAAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
26 22 0.54
27 19 0.46
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (27 bp):
GATATTTTATAATTATTATATTAATAA
Found at i:85122822 original size:29 final size:30
Alignment explanation
Indices: 85122781--85122861 Score: 92
Period size: 32 Copynumber: 2.7 Consensus size: 30
85122771 ACGTTGATGA
*
85122781 TATTTTATAATTATTAATTAGATA-AATAT
1 TATTTTATTATTATTAATTAGATATAATAT
* **
85122810 TATTTTATTATTATTTTAATAAGATATTTTAT
1 TATTTTATTATTA--TTAATTAGATATAATAT
*
85122842 TATTTTATTATTATTTATTA
1 TATTTTATTATTATTAATTA
85122862 AGTATAAAAG
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 12 0.28
30 5 0.12
31 10 0.23
32 16 0.37
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
TATTTTATTATTATTAATTAGATATAATAT
Found at i:85124428 original size:33 final size:33
Alignment explanation
Indices: 85124314--85124469 Score: 97
Period size: 33 Copynumber: 4.7 Consensus size: 33
85124304 AATTGACGGA
* * **
85124314 TAAGACCATGGCTGGGCCATGGCAATAT-ATGTG
1 TAAGACCATAGCTGGGCTATGGCACCATGA-GTG
* * *
85124347 TAATACCATAGCTAGGCTATGTCATCC-TGA-TG
1 TAAGACCATAGCTGGGCTATGGCA-CCATGAGTG
* *
85124379 ATAAGACCATATCTGGGATATGGCACCATGAGTG
1 -TAAGACCATAGCTGGGCTATGGCACCATGAGTG
* * * *
85124413 TAAGACCATGGCTGGGCCAT-G-ACAATACACGTG
1 TAAGACCATAGCTGGGCTATGGCACCAT-GA-GTG
* *
85124446 TAAGACCATAGTTGGACTATGGCA
1 TAAGACCATAGCTGGGCTATGGCA
85124470 TCATACCAAA
Statistics
Matches: 92, Mismatches: 22, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
31 4 0.04
32 6 0.07
33 77 0.84
34 4 0.04
35 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (33 bp):
TAAGACCATAGCTGGGCTATGGCACCATGAGTG
Found at i:85124533 original size:45 final size:45
Alignment explanation
Indices: 85124483--85124583 Score: 123
Period size: 45 Copynumber: 2.2 Consensus size: 45
85124473 TACCAAAAAT
* *
85124483 GAGTAAGACCATTGCTGAAAGACACTAT-GCAATCACGATTCAGAC
1 GAGTAAGACCATAGCTGAAAGACACTATGGC-ATCACGATTCAAAC
* * * *
85124528 GAGTAAGACCATAGGTGAAAGACGCTATGGCATCGCGATTCAAAT
1 GAGTAAGACCATAGCTGAAAGACACTATGGCATCACGATTCAAAC
*
85124573 GTGTAAGACCA
1 GAGTAAGACCA
85124584 CGGTTGAAAG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 46 0.96
46 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (45 bp):
GAGTAAGACCATAGCTGAAAGACACTATGGCATCACGATTCAAAC
Found at i:85124592 original size:45 final size:44
Alignment explanation
Indices: 85124479--85124594 Score: 117
Period size: 45 Copynumber: 2.6 Consensus size: 44
85124469 ATCATACCAA
* *
85124479 AAATGAGTAAGACCATTGCTGAAAGACACTATGCAATCACGATTC
1 AAATGAGTAAGACCA-AGGTGAAAGACACTATGCAATCACGATTC
* * * *
85124524 AGACGAGTAAGACCATAGGTGAAAGACGCTATGGC-ATCGCGATTC
1 AAATGAGTAAGACCA-AGGTGAAAGACACTAT-GCAATCACGATTC
* *
85124569 AAATGTGTAAGACCACGGTTGAAAGA
1 AAATGAGTAAGACCAAGG-TGAAAGA
85124595 TACCATGGCA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 2 0.03
45 55 0.93
46 2 0.03
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (44 bp):
AAATGAGTAAGACCAAGGTGAAAGACACTATGCAATCACGATTC
Found at i:85124635 original size:46 final size:46
Alignment explanation
Indices: 85124576--85124839 Score: 350
Period size: 46 Copynumber: 5.7 Consensus size: 46
85124566 TTCAAATGTG
*
85124576 TAAGACCACGGTTGAAAGATACCATGGCAACATGACAGGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAAGAA
*
85124622 TAAGACCATGGTTGAAAGATACCATGGCAACATAACAGGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAAGAA
* *
85124668 TAAGACCATGGTTGAAAGATACCATGGCAACATAACAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAAGAA
* ** * * *
85124714 TAAGACCATGGTTGAAAGGTACCATGGCAATGTGAAAAGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAAGAA
* * *
85124760 TAAGACCATGGTTGAAAGATACCATAGCCACATGACA-GAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAA-GAA
** * * *
85124806 TAAGACCATAATTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
85124840 TCGAAGATAA
Statistics
Matches: 193, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 4 0.02
46 189 0.98
ACGTcount: A:0.45, C:0.16, G:0.22, T:0.17
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAAGAA
Found at i:85125800 original size:64 final size:64
Alignment explanation
Indices: 85125699--85125856 Score: 273
Period size: 64 Copynumber: 2.5 Consensus size: 64
85125689 TGAGCTTATA
* *
85125699 TAATTTATATAAGAAAATTTATATTAAAAAGTTTGTTTCAATTAGATTAATA-TTGTAATGTATT
1 TAATTTATATAACAAAATTTATATTACAAAGTTTGTTTCAATTAGATTAA-AGTTGTAATGTATT
85125763 TAATTTATATAACAAAATTTATATTACAAAGTTTGTTTCAATTAGATTAAAGTTGTAATGTATT
1 TAATTTATATAACAAAATTTATATTACAAAGTTTGTTTCAATTAGATTAAAGTTGTAATGTATT
*
85125827 TAATTTATATTACAAAATTTATATTACAAA
1 TAATTTATATAACAAAATTTATATTACAAA
85125857 ACTAAGTTTG
Statistics
Matches: 90, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
63 1 0.01
64 89 0.99
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.46
Consensus pattern (64 bp):
TAATTTATATAACAAAATTTATATTACAAAGTTTGTTTCAATTAGATTAAAGTTGTAATGTATT
Found at i:85125847 original size:14 final size:14
Alignment explanation
Indices: 85125828--85125857 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
85125818 TAATGTATTT
85125828 AATTTATATTACAA
1 AATTTATATTACAA
85125842 AATTTATATTACAA
1 AATTTATATTACAA
85125856 AA
1 AA
85125858 CTAAGTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:85126659 original size:43 final size:43
Alignment explanation
Indices: 85126598--85126790 Score: 289
Period size: 43 Copynumber: 4.5 Consensus size: 43
85126588 TTATTTAAAA
*
85126598 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCAC
*
85126641 AAACGCCACTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCAC
* * * *
85126684 AAACGCCGTTAGAGGTCAAGGCCTTTAGCGGCG-TTTTCCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTT-CCCAC
* *
85126727 AAACGCCGCTAGAGGTCTTGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCAC
*
85126770 AAACGCCGCTAAAGGTAATGA
1 AAACGCCGCTAAAGGTCATGA
85126791 AATTTAAAAA
Statistics
Matches: 134, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 4 0.03
43 126 0.94
44 4 0.03
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:85127994 original size:138 final size:138
Alignment explanation
Indices: 85127825--85128096 Score: 474
Period size: 138 Copynumber: 2.0 Consensus size: 138
85127815 TTTTAAAATT
85127825 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
* * *
85127890 TTAATGCCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTA-AAAGC
66 TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGGACTCC-ACAAAGC
85127954 ATCCAGACG
130 ATCCAGACG
*
85127963 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTATTATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
* *
85128028 TTAATGCCAATTTTTAAAGAGATTACATATGATTCTAAAATTCAAAACAGGGACTCCACAAAGCA
66 TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGGACTCCACAAAGCA
85128093 TCCA
131 TCCA
85128097 TACATTATTA
Statistics
Matches: 127, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
137 1 0.01
138 126 0.99
ACGTcount: A:0.49, C:0.15, G:0.10, T:0.27
Consensus pattern (138 bp):
TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGGACTCCACAAAGCA
TCCAGACG
Found at i:85130363 original size:14 final size:15
Alignment explanation
Indices: 85130336--85130376 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
85130326 TTATTTCTTA
85130336 CATAA-CCATAAAT-
1 CATAATCCATAAATC
*
85130349 CATAATCCCTAAATC
1 CATAATCCATAAATC
85130364 CATAATCCATAAA
1 CATAATCCATAAA
85130377 CCTTAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 5 0.21
14 7 0.29
15 12 0.50
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (15 bp):
CATAATCCATAAATC
Found at i:85130383 original size:22 final size:22
Alignment explanation
Indices: 85130341--85130383 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
85130331 TCTTACATAA
*
85130341 CCATAAATCATAATCCCTAAAT
1 CCATAAATCATAAACCCTAAAT
*
85130363 CCAT-AATCCATAAACCTTAAA
1 CCATAAAT-CATAAACCCTAAA
85130384 ATAATAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.26
Consensus pattern (22 bp):
CCATAAATCATAAACCCTAAAT
Found at i:85130548 original size:15 final size:15
Alignment explanation
Indices: 85130524--85130565 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
85130514 CACTAACTAA
85130524 TCTAAACCCTAAACT
1 TCTAAACCCTAAACT
* *
85130539 TCTAATCCCTAAACC
1 TCTAAACCCTAAACT
*
85130554 T-TAAACCTTAAA
1 TCTAAACCCTAAA
85130566 ACATAAGCCC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.40, C:0.31, G:0.00, T:0.29
Consensus pattern (15 bp):
TCTAAACCCTAAACT
Found at i:85130902 original size:41 final size:40
Alignment explanation
Indices: 85130825--85130911 Score: 120
Period size: 41 Copynumber: 2.1 Consensus size: 40
85130815 TCAAATACAT
85130825 TTAAAACAAATATTAAAACAATAAACAAATAAAAAATGATA
1 TTAAAACAAATATTAAAACAATAAACAAATAAAAAAT-ATA
* * **
85130866 TTAAAACAATTATTAAAACAATAGACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAATAAACAAATAAAAAATATA
*
85130906 ATAAAA
1 TTAAAA
85130912 AGTGATTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 8 0.20
41 33 0.80
ACGTcount: A:0.66, C:0.07, G:0.03, T:0.24
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAATAAACAAATAAAAAATATA
Found at i:85131291 original size:40 final size:40
Alignment explanation
Indices: 85131135--85131293 Score: 187
Period size: 41 Copynumber: 3.9 Consensus size: 40
85131125 ATTATATGAC
* * *
85131135 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTACTGTTCTGGT
1 TTTTAGCGGCGTTTTATCGAAAACGCCGCTATTGCTCT-GT
* *
85131176 TTTTAGCGGCGTTTTA-CCAAAAGCGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTATCGAAAA-CGCCGCTATTGCTCTGT
* *
85131216 TTTTAGCGGCGTTTTAACAAAAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTATC-GAAAACGCCGCTATTGCTCTGT
* *
85131257 TTTTAGCGGCATTTT-TGGTAAAACGCCGCTATTGCTC
1 TTTTAGCGGCGTTTTATCG-AAAACGCCGCTATTGCTC
85131294 CATTTTTTAT
Statistics
Matches: 104, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
40 40 0.38
41 60 0.58
42 4 0.04
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTATCGAAAACGCCGCTATTGCTCTGT
Found at i:85131300 original size:81 final size:81
Alignment explanation
Indices: 85131135--85131300 Score: 192
Period size: 81 Copynumber: 2.0 Consensus size: 81
85131125 ATTATATGAC
* * * *
85131135 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTACTGTTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTAACAAAAACGCCGCTACTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
**
85131200 GCCGCTAATGCTCTGT
66 GCCGCTAATGCTCCAT
* * ***
85131216 TTTTAGCGGCGTTTTAACAAAAAACGCCGCTATTGCTCT-GTTTTTAGCGGCATTTTTGGTAAAA
1 TTTTAGCGGCGTTTTAAC-AAAAACGCCGCTACTGCTCTGGTTTTTAGCGGC-GTTTTACCAAAA
*
85131280 -CGCCGCTATTGCTCCAT
64 GCGCCGCTAATGCTCCAT
85131297 TTTT
1 TTTT
85131301 TATAATTTTT
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
81 47 0.66
82 24 0.34
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (81 bp):
TTTTAGCGGCGTTTTAACAAAAACGCCGCTACTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
GCCGCTAATGCTCCAT
Found at i:85131960 original size:14 final size:14
Alignment explanation
Indices: 85131941--85131975 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
85131931 CAAATTACAT
85131941 GTTAGAATAGTATC
1 GTTAGAATAGTATC
85131955 GTTAGAATAGTATC
1 GTTAGAATAGTATC
*
85131969 ATTAGAA
1 GTTAGAA
85131976 AAAAAATGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (14 bp):
GTTAGAATAGTATC
Found at i:85134481 original size:19 final size:18
Alignment explanation
Indices: 85134457--85134501 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
85134447 TTGCCTTTTT
85134457 TTTCTTTACCATCTCTTTC
1 TTTCTTTACCATCTC-TTC
* *
85134476 TTTCTTTTCCTTCTCTTC
1 TTTCTTTACCATCTCTTC
85134494 TCTTCTTT
1 T-TTCTTT
85134502 CTTTTTTGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.04, C:0.31, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTCTTTACCATCTCTTC
Found at i:85141790 original size:22 final size:22
Alignment explanation
Indices: 85141756--85141808 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
85141746 AATCAGGGTT
* *
85141756 TTAGGATTATAAATAAATTAAA
1 TTAGGGTTTTAAATAAATTAAA
85141778 TTAGGGTTTTAAATAAATTAAA
1 TTAGGGTTTTAAATAAATTAAA
*
85141800 TTAGTGTTT
1 TTAGGGTTT
85141809 ACGATTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (22 bp):
TTAGGGTTTTAAATAAATTAAA
Found at i:85141821 original size:86 final size:84
Alignment explanation
Indices: 85141713--85141870 Score: 226
Period size: 86 Copynumber: 1.9 Consensus size: 84
85141703 AATTATTTAG
* *
85141713 ATTAGGGTTTATGGTTTCTAAATAAAATAAGTAAATCAGGGTTTTAGGATTATAAATAAATTAAA
1 ATTAGGGTTTACGATTTCTAAATAAAATAAGTAAATCAGGG--TTAGGATTATAAATAAATTAAA
85141778 TTAGGGTTTTAAATAAATTAA
64 TTAGGGTTTTAAATAAATTAA
* * * * * *
85141799 ATTAGTGTTTACGATTTGTAAATAAATTAAGTAAATTAGGGTTAGGGTTTTAAATAAATTAAATT
1 ATTAGGGTTTACGATTTCTAAATAAAATAAGTAAATCAGGGTTAGGATTATAAATAAATTAAATT
85141864 AGGGTTT
66 AGGGTTT
85141871 ATGATTTTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
84 29 0.45
86 35 0.55
ACGTcount: A:0.41, C:0.02, G:0.18, T:0.40
Consensus pattern (84 bp):
ATTAGGGTTTACGATTTCTAAATAAAATAAGTAAATCAGGGTTAGGATTATAAATAAATTAAATT
AGGGTTTTAAATAAATTAA
Found at i:85141823 original size:30 final size:28
Alignment explanation
Indices: 85141784--85142001 Score: 119
Period size: 34 Copynumber: 7.5 Consensus size: 28
85141774 TAAATTAGGG
85141784 TTTTAAATAAATTAAATTAGTGTTTACGA
1 TTTTAAATAAATTAAATTAG-GTTTACGA
* * *
85141813 TTTGTAAATAAATTAAGTAAATTAGGGTTAGGG
1 TTT-TAAATAAA-T---TAAATTAGGTTTACGA
*
85141846 TTTTAAATAAATTAAATTAGGGTTTATGA
1 TTTTAAATAAATTAAATTA-GGTTTACGA
* *
85141875 TTTTTAAATAAATTAATTAAATTAGGGTTCTAGGG
1 -TTTTAAAT--A--AATTAAATTA-GGTT-TACGA
*
85141910 TTTTAAATAAATTAAGTTAGG-----G-
1 TTTTAAATAAATTAAATTAGGTTTACGA
* * *
85141932 TTTTAAATAAAATAAATTAGGGTTTATGG
1 TTTTAAATAAATTAAATTA-GGTTTACGA
** * *
85141961 TTTTAAATAAATT-AA-GGGGTTTATGG
1 TTTTAAATAAATTAAATTAGGTTTACGA
85141987 TTTTAAATAAATTAA
1 TTTTAAATAAATTAA
85142002 GTAAATTAAT
Statistics
Matches: 155, Mismatches: 14, Indels: 42
0.73 0.07 0.20
Matches are distributed among these distances:
22 17 0.11
23 3 0.02
26 22 0.14
27 1 0.01
28 10 0.06
29 23 0.15
30 25 0.16
31 2 0.01
32 10 0.06
33 8 0.05
34 31 0.20
35 3 0.02
ACGTcount: A:0.40, C:0.01, G:0.17, T:0.42
Consensus pattern (28 bp):
TTTTAAATAAATTAAATTAGGTTTACGA
Found at i:85141834 original size:34 final size:33
Alignment explanation
Indices: 85141787--85141926 Score: 146
Period size: 34 Copynumber: 4.3 Consensus size: 33
85141777 ATTAGGGTTT
* * * *
85141787 TAAATAAATTAAATTAGTGTTTACGATTTGTAAA
1 TAAATTAAGTAAATTAGGGTTTAGGATTT-TAAA
*
85141821 TAAATTAAGTAAATTAGGG-TTAGGGTTTTAAA
1 TAAATTAAGTAAATTAGGGTTTAGGATTTTAAA
*
85141853 TAAA-T---TAAATTAGGGTTTATGATTTTTAAA
1 TAAATTAAGTAAATTAGGGTTTAGGA-TTTTAAA
* *
85141883 TAAATTAATTAAATTAGGGTTCTAGGGTTTTAAA
1 TAAATTAAGTAAATTAGGGTT-TAGGATTTTAAA
85141917 TAAATTAAGT
1 TAAATTAAGT
85141927 TAGGGTTTTA
Statistics
Matches: 89, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
28 10 0.11
29 4 0.04
30 11 0.12
31 2 0.02
32 8 0.09
33 7 0.08
34 44 0.49
35 3 0.03
ACGTcount: A:0.41, C:0.01, G:0.16, T:0.41
Consensus pattern (33 bp):
TAAATTAAGTAAATTAGGGTTTAGGATTTTAAA
Found at i:85141849 original size:62 final size:63
Alignment explanation
Indices: 85141778--85142046 Score: 275
Period size: 62 Copynumber: 4.5 Consensus size: 63
85141768 ATAAATTAAA
*
85141778 TTAGGGTTTTAAATAAATTAAATTAGTGTTTACGATTTGTAAATAAATTAAGTAAATTAGGG-
1 TTAGGGTTTTAAATAAATTAAATTAGGGTTTACGATTTGTAAATAAATTAAGTAAATTAGGGT
* * *
85141840 TTAGGGTTTTAAATAAATTAAATTAGGGTTTATGATTTTTAAATAAATTAATTAAATTAGGGT
1 TTAGGGTTTTAAATAAATTAAATTAGGGTTTACGATTTGTAAATAAATTAAGTAAATTAGGGT
*
85141903 TCTAGGGTTTTAAATAAATTAAGTTA-GG-----G-TTT-TAAAT-AA--AA-TAAATTAGGGT
1 T-TAGGGTTTTAAATAAATTAAATTAGGGTTTACGATTTGTAAATAAATTAAGTAAATTAGGGT
* * * * **
85141955 TTATGGTTTTAAATAAATT-AA--GGGGTTTATGGTTT-TAAATAAATTAAGTAAATTAATGT
1 TTAGGGTTTTAAATAAATTAAATTAGGGTTTACGATTTGTAAATAAATTAAGTAAATTAGGGT
* * *
85142014 TCTTGGGTTTTAAATAAAGTAAATTAAGGTTTA
1 T-TAGGGTTTTAAATAAATTAAATTAGGGTTTA
85142047 GGGTTAAAAT
Statistics
Matches: 175, Mismatches: 15, Indels: 33
0.78 0.07 0.15
Matches are distributed among these distances:
49 2 0.01
50 1 0.01
51 17 0.10
52 12 0.07
53 2 0.01
54 1 0.01
55 10 0.06
56 7 0.04
57 3 0.02
58 3 0.02
59 10 0.06
60 15 0.09
61 2 0.01
62 58 0.33
63 9 0.05
64 23 0.13
ACGTcount: A:0.39, C:0.01, G:0.17, T:0.42
Consensus pattern (63 bp):
TTAGGGTTTTAAATAAATTAAATTAGGGTTTACGATTTGTAAATAAATTAAGTAAATTAGGGT
Found at i:85141933 original size:22 final size:22
Alignment explanation
Indices: 85141905--85141956 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
85141895 ATTAGGGTTC
* *
85141905 TAGGGTTTTAAATAAATTAAGT
1 TAGGGTTTTAAATAAAATAAAT
85141927 TAGGGTTTTAAATAAAATAAAT
1 TAGGGTTTTAAATAAAATAAAT
85141949 TAGGGTTT
1 TAGGGTTT
85141957 ATGGTTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (22 bp):
TAGGGTTTTAAATAAAATAAAT
Found at i:85141987 original size:26 final size:26
Alignment explanation
Indices: 85141941--85142002 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
85141931 GTTTTAAATA
85141941 AAATAAATT-A-GGGTTTATGGTTTT
1 AAATAAATTAAGGGGTTTATGGTTTT
85141965 AAATAAATTAAGGGGTTTATGGTTTT
1 AAATAAATTAAGGGGTTTATGGTTTT
85141991 AAATAAATTAAG
1 AAATAAATTAAG
85142003 TAAATTAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
24 9 0.25
25 1 0.03
26 26 0.72
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (26 bp):
AAATAAATTAAGGGGTTTATGGTTTT
Found at i:85142007 original size:111 final size:113
Alignment explanation
Indices: 85141821--85142045 Score: 303
Period size: 111 Copynumber: 2.0 Consensus size: 113
85141811 GATTTGTAAA
* * *
85141821 TAAATTAAGTAAATTAGGGTTAGGGTTTTAAATAAATTAAATTAGGGTTTATGATTTTTAAATAA
1 TAAATAAAATAAATTAGGGTTAGGGTTTTAAATAAATTAAA-TAGGGTTTATGAGTTTTAAATAA
* * * * *
85141886 ATTAATTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTT
65 ATTAAGTAAATTAAGGTTCTAGGGTTTTAAATAAAGTAAATTAAGGTTT
* *
85141935 TAAATAAAATAAATTAGGGTTTATGGTTTTAAATAAATT-AA-GGGGTTTATG-GTTTTAAATAA
1 TAAATAAAATAAATTAGGG-TTAGGGTTTTAAATAAATTAAATAGGGTTTATGAGTTTTAAATAA
* *
85141997 ATTAAGTAAATTAATGTTCTTGGGTTTTAAATAAAGTAAATTAAGGTTT
65 ATTAAGTAAATTAAGGTTCTAGGGTTTTAAATAAAGTAAATTAAGGTTT
85142046 AGGGTTAAAA
Statistics
Matches: 98, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
111 52 0.53
112 9 0.09
114 19 0.19
115 18 0.18
ACGTcount: A:0.40, C:0.01, G:0.18, T:0.42
Consensus pattern (113 bp):
TAAATAAAATAAATTAGGGTTAGGGTTTTAAATAAATTAAATAGGGTTTATGAGTTTTAAATAAA
TTAAGTAAATTAAGGTTCTAGGGTTTTAAATAAAGTAAATTAAGGTTT
Found at i:85142892 original size:25 final size:25
Alignment explanation
Indices: 85142858--85142907 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
85142848 CGTGTACACC
85142858 TTAATTTACTATTAAAA-ATATAAAA
1 TTAATTTACTATTAAAACAT-TAAAA
85142883 TTAATTTACTATTAAAACATTAAAA
1 TTAATTTACTATTAAAACATTAAAA
85142908 ACAACTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (25 bp):
TTAATTTACTATTAAAACATTAAAA
Found at i:85143866 original size:7 final size:7
Alignment explanation
Indices: 85143856--85143893 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
85143846 TTATATACAT
85143856 AATACTA
1 AATACTA
85143863 AATAC-A
1 AATACTA
*
85143869 AATACTG
1 AATACTA
85143876 AATACTA
1 AATACTA
*
85143883 AGTACTA
1 AATACTA
85143890 AATA
1 AATA
85143894 TGAAATGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.55, C:0.13, G:0.05, T:0.26
Consensus pattern (7 bp):
AATACTA
Found at i:85143879 original size:20 final size:20
Alignment explanation
Indices: 85143856--85143897 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
85143846 TTATATACAT
85143856 AATACTAAATAC-AAATACTG
1 AATACTAAATACTAAATA-TG
*
85143876 AATACTAAGTACTAAATATG
1 AATACTAAATACTAAATATG
85143896 AA
1 AA
85143898 ATGATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.55, C:0.12, G:0.07, T:0.26
Consensus pattern (20 bp):
AATACTAAATACTAAATATG
Found at i:85145034 original size:20 final size:18
Alignment explanation
Indices: 85145006--85145044 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
85144996 TGCTTATTAT
*
85145006 TTAAGAAATAATAATTATAA
1 TTAAAAAAT-ATAA-TATAA
85145026 TTAAAAAATATAATATAA
1 TTAAAAAATATAATATAA
85145044 T
1 T
85145045 AATATAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
TTAAAAAATATAATATAA
Found at i:85145073 original size:11 final size:10
Alignment explanation
Indices: 85145048--85145099 Score: 52
Period size: 11 Copynumber: 5.1 Consensus size: 10
85145038 ATATAATAAT
*
85145048 ATAAAGTAAA
1 ATAAAGAAAA
85145058 ATAAAGAAATA
1 ATAAAGAAA-A
*
85145069 ATAAA-AAGA
1 ATAAAGAAAA
*
85145078 ATAAAGACACA
1 ATAAAGA-AAA
85145089 ATAAAGAAAA
1 ATAAAGAAAA
85145099 A
1 A
85145100 GAACAGAGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 6 0.17
10 14 0.40
11 15 0.43
ACGTcount: A:0.73, C:0.04, G:0.10, T:0.13
Consensus pattern (10 bp):
ATAAAGAAAA
Found at i:85147510 original size:16 final size:16
Alignment explanation
Indices: 85147491--85147555 Score: 53
Period size: 16 Copynumber: 3.9 Consensus size: 16
85147481 TAAAAAATTA
*
85147491 TAAAATTAAAATTAAT
1 TAAAATTAAAATAAAT
*
85147507 TAAAATT-ACATAAAT
1 TAAAATTAAAATAAAT
85147522 TAAAAATT-AAATAATAT
1 T-AAAATTAAAATAA-AT
*
85147539 TCAAATTTTAAAATAAA
1 T-AAA-ATTAAAATAAA
85147556 CCGTTACCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
15 7 0.17
16 18 0.45
17 6 0.15
18 3 0.08
19 6 0.15
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAAATTAAAATAAAT
Found at i:85147524 original size:15 final size:15
Alignment explanation
Indices: 85147491--85147545 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
85147481 TAAAAAATTA
*
85147491 TAAAATTAAAATTAAT
1 TAAAATT-AAATAAAT
*
85147507 TAAAATTACATAAAT
1 TAAAATTAAATAAAT
85147522 TAAAAATTAAATAATAT
1 T-AAAATTAAATAA-AT
*
85147539 TCAAATT
1 TAAAATT
85147546 TTAAAATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 7 0.21
16 23 0.70
17 3 0.09
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (15 bp):
TAAAATTAAATAAAT
Found at i:85147731 original size:21 final size:21
Alignment explanation
Indices: 85147707--85147760 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
85147697 TATAAAGAGC
*
85147707 TTTGAGAAATTTAATGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
** *
85147728 TTTGAGAGCTTTAGGGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
85147749 -TTGTAGAAATTT
1 TTTG-AGAAATTT
85147761 TTTGCTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.39, C:0.02, G:0.24, T:0.35
Consensus pattern (21 bp):
TTTGAGAAATTTAAGGAGAAA
Found at i:85151624 original size:41 final size:40
Alignment explanation
Indices: 85151508--85151677 Score: 146
Period size: 40 Copynumber: 4.2 Consensus size: 40
85151498 CTATAACTGA
* * * * *
85151508 CACTTAGTATGCGATTCAACATAGCGTT-GGCTATATGTGG
1 CACTTAGTGTGTGAATCGACATAGC-TTCGGCTATATATGG
* *
85151548 CACTTAGTGTGTGATTCGACACAGCTTCGGCTATATATGG
1 CACTTAGTGTGTGAATCGACATAGCTTCGGCTATATATGG
*
85151588 CA-TTGAGTGTGTGAGATCGAGATAGCTTCGGCTATATATGG
1 CACTT-AGTGTGTGA-ATCGACATAGCTTCGGCTATATATGG
* * * * * * * * *
85151629 CACTTCGTGCGCGATTTGAGATAGCATCGGCTATGTACGG
1 CACTTAGTGTGTGAATCGACATAGCTTCGGCTATATATGG
85151669 CACTTAGTG
1 CACTTAGTG
85151678 AGCGAGATAT
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 4 0.04
40 72 0.66
41 31 0.28
42 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (40 bp):
CACTTAGTGTGTGAATCGACATAGCTTCGGCTATATATGG
Found at i:85151685 original size:81 final size:81
Alignment explanation
Indices: 85151528--85151685 Score: 176
Period size: 81 Copynumber: 2.0 Consensus size: 81
85151518 GCGATTCAAC
* * * * *
85151528 ATAGCGTTGGCTATATGTGGCACTTAGTGTGTGATTCGACACAGCTTCGGCTATATATGGCATTG
1 ATAGCGTTGGCTATATATGGCACTTAGTGCGCGATTCGACACAGCATCGGCTATATACGGCATTG
* *
85151593 AGTGTGTGAGATCGAG
66 AGTGAGCGAGATCGAG
* * * * *
85151609 ATAGC-TTCGGCTATATATGGCACTTCGTGCGCGATTTGAGATAGCATCGGCTATGTACGGCACT
1 ATAGCGTT-GGCTATATATGGCACTTAGTGCGCGATTCGACACAGCATCGGCTATATACGGCA-T
85151673 T-AGTGAGCGAGAT
64 TGAGTGAGCGAGAT
85151686 ATCGAGTATT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
80 2 0.03
81 59 0.94
82 2 0.03
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (81 bp):
ATAGCGTTGGCTATATATGGCACTTAGTGCGCGATTCGACACAGCATCGGCTATATACGGCATTG
AGTGAGCGAGATCGAG
Found at i:85153653 original size:18 final size:17
Alignment explanation
Indices: 85153631--85153679 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
85153621 CCATTGTTAT
*
85153631 TATTTTTAGAATTTTTA
1 TATTTTTATAATTTTTA
85153648 TGATTTTTATAAGTTTTTA
1 T-ATTTTTATAA-TTTTTA
85153667 -ATTTTTATAATTT
1 TATTTTTATAATTT
85153680 GAACCATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
16 3 0.10
17 11 0.38
18 9 0.31
19 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (17 bp):
TATTTTTATAATTTTTA
Found at i:85156426 original size:26 final size:25
Alignment explanation
Indices: 85156390--85156494 Score: 178
Period size: 26 Copynumber: 4.2 Consensus size: 25
85156380 CATGAAATTC
85156390 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAA-CCAT
85156416 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAA-CCAT
85156442 TATCATGG-A-ATTTACCTAACCAT
1 TATCATGGAACATTTACCTAACCAT
85156465 TATCATGGAACATTTACCTAACCAT
1 TATCATGGAACATTTACCTAACCAT
85156490 TATCA
1 TATCA
85156495 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
23 12 0.16
24 11 0.14
25 20 0.26
26 34 0.44
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.32
Consensus pattern (25 bp):
TATCATGGAACATTTACCTAACCAT
Found at i:85156472 original size:49 final size:51
Alignment explanation
Indices: 85156390--85156494 Score: 180
Period size: 49 Copynumber: 2.1 Consensus size: 51
85156380 CATGAAATTC
85156390 TATCATGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAA-CCAT
85156442 TATCATGG-A-ATTTACCTAA-CCATTATCATGGAACATTTACCTAACCAT
1 TATCATGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCAT
85156490 TATCA
1 TATCA
85156495 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
48 9 0.17
49 25 0.47
50 10 0.19
51 1 0.02
52 8 0.15
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.32
Consensus pattern (51 bp):
TATCATGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCAT
Found at i:85163451 original size:26 final size:26
Alignment explanation
Indices: 85163422--85163557 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
85163412 CATGAAATTC
85163422 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
85163448 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
85163474 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
85163500 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
85163526 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
85163552 TTATCA
1 TTATCA
85163558 ATTTGTATCA
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 108 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:85165537 original size:15 final size:15
Alignment explanation
Indices: 85165519--85165551 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
85165509 TTATAGAACT
85165519 TTAATGTCTACAATG
1 TTAATGTCTACAATG
85165534 TTAATGTCTACAATG
1 TTAATGTCTACAATG
85165549 TTA
1 TTA
85165552 TGGAGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (15 bp):
TTAATGTCTACAATG
Found at i:85167640 original size:65 final size:65
Alignment explanation
Indices: 85167536--85167666 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
85167526 CTGTCCAAAG
85167536 TGAACAAAGAGTCTTTGGATATTGAATAGTTATTTTTGCATGTGAAGCTTTTCTACCTTCAAGAT
1 TGAACAAAGAGTCTTTGGATATTGAATAGTTATTTTTGCATGTGAAGCTTTTCTACCTTCAAGAT
85167601 TGAACAAAGAGTCTTTGGATATTGAATAGTTATTTTTGCATGTGAAGCTTTTCTACCTTCAAGAT
1 TGAACAAAGAGTCTTTGGATATTGAATAGTTATTTTTGCATGTGAAGCTTTTCTACCTTCAAGAT
85167666 T
1 T
85167667 TAGCTTTAGG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.40
Consensus pattern (65 bp):
TGAACAAAGAGTCTTTGGATATTGAATAGTTATTTTTGCATGTGAAGCTTTTCTACCTTCAAGAT
Found at i:85172066 original size:5 final size:5
Alignment explanation
Indices: 85172032--85172088 Score: 66
Period size: 5 Copynumber: 12.0 Consensus size: 5
85172022 TATAAATTTA
* * *
85172032 ATTAT GTTAA ATTAT AATA- ATTAT A-T-T ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
85172079 ATTAT ATTAT
1 ATTAT ATTAT
85172089 GAAATAAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
3 2 0.05
4 5 0.12
5 36 0.84
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (5 bp):
ATTAT
Found at i:85172448 original size:23 final size:23
Alignment explanation
Indices: 85172422--85172469 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
85172412 GTGATAAAAA
85172422 TATACAAATGTAATA-ATTGTATT
1 TATACAAATGTAATATATT-TATT
**
85172445 TATACATTTGTAATATATTTATT
1 TATACAAATGTAATATATTTATT
85172468 TA
1 TA
85172470 GTTACTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 19 0.86
24 3 0.14
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (23 bp):
TATACAAATGTAATATATTTATT
Found at i:85173506 original size:17 final size:19
Alignment explanation
Indices: 85173486--85173530 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 19
85173476 AATATGTGAG
*
85173486 GATTTGAAATGT-A-TATT
1 GATTTGAAATGTAATTAGT
*
85173503 GA-TTGAAAAGTAATTAGT
1 GATTTGAAATGTAATTAGT
85173521 GATTTGAAAT
1 GATTTGAAAT
85173531 TGATTGGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
16 8 0.36
17 3 0.14
18 5 0.23
19 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (19 bp):
GATTTGAAATGTAATTAGT
Found at i:85173888 original size:21 final size:21
Alignment explanation
Indices: 85173862--85173926 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
85173852 GGCTTTGCCG
85173862 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACTTTATGTGTCGT
* ** *
85173883 ATCAGGCACCTCGTGTGTCAT
1 ATCAGGCACTTTATGTGTCGT
*
85173904 TTCAGGCACTTTATGTGTCGT
1 ATCAGGCACTTTATGTGTCGT
85173925 AT
1 AT
85173927 ACTGCTTCTA
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (21 bp):
ATCAGGCACTTTATGTGTCGT
Found at i:85175358 original size:41 final size:41
Alignment explanation
Indices: 85175261--85175508 Score: 333
Period size: 41 Copynumber: 6.1 Consensus size: 41
85175251 GCAAAAATTG
* * *
85175261 TAAAACACAGAGCAATAGCGGCG--TTTTGTAAAATGCCGC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTTGTAAAACGCCGC
85175300 T-AAAAACAGAGCATTAGCGGCGCTTTTTGTAAAACGCCGC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTTGTAAAACGCCGC
* * *
85175340 TAAAAAACAGAACATTAGCGGCGCTTTTGGTAAAACGCCTC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTTGTAAAACGCCGC
* *
85175381 TAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCTGC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTTGTAAAACGCCGC
* *
85175422 TAAAAACCAGAGCATTAGCGGTGC-TTTTGATAAAACGCCGC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTTG-TAAAACGCCGC
* * * *
85175463 TAAACACCAGAGCATTAGCGGCGCTTTTAGTAAAACGCCAC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTTGTAAAACGCCGC
85175504 TAAAA
1 TAAAA
85175509 GTCATATAAC
Statistics
Matches: 186, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 19 0.10
39 1 0.01
40 20 0.11
41 142 0.76
42 4 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (41 bp):
TAAAAAACAGAGCATTAGCGGCGCTTTTTGTAAAACGCCGC
Found at i:85176767 original size:14 final size:15
Alignment explanation
Indices: 85176736--85176770 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
85176726 AAAAAAATTT
85176736 AAAATTTTAAAATAA
1 AAAATTTTAAAATAA
85176751 AAAATTTTAAAATAA
1 AAAATTTTAAAATAA
85176766 AAAAT
1 AAAAT
85176771 AAAAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAATTTTAAAATAA
Found at i:85176792 original size:15 final size:14
Alignment explanation
Indices: 85176744--85176792 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
85176734 TTAAAATTTT
*
85176744 AAAATAAAAAATTTT
1 AAAATAAAAAA-TTA
*
85176759 AAAATAAAAAATAA
1 AAAATAAAAAATTA
*
85176773 AAAATAAAAGACTTA
1 AAAATAAAA-AATTA
85176788 AAAAT
1 AAAAT
85176793 TTGATATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 10 0.34
15 19 0.66
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (14 bp):
AAAATAAAAAATTA
Found at i:85177014 original size:41 final size:41
Alignment explanation
Indices: 85176940--85177048 Score: 119
Period size: 41 Copynumber: 2.7 Consensus size: 41
85176930 TAAAAAACTT
* * * * *
85176940 AAAATTAAACAATAGTGGCATTTTTAGATAAAATGCCACAA
1 AAAATTAAACTATAATGGCGTTTTTAGAAAAAATACCACAA
* * **
85176981 AAAATTGAACTATAATGGCGTTTTTATAAAAAATACCGTAA
1 AAAATTAAACTATAATGGCGTTTTTAGAAAAAATACCACAA
* *
85177022 AAAGTTAAACTATAACGGCGTTTTTAG
1 AAAATTAAACTATAATGGCGTTTTTAG
85177049 TGGACACGCC
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (41 bp):
AAAATTAAACTATAATGGCGTTTTTAGAAAAAATACCACAA
Found at i:85181733 original size:19 final size:19
Alignment explanation
Indices: 85181710--85181756 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
85181700 ATTTAATCTA
*
85181710 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
85181728 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
85181748 ATTTTTATT
1 ATTTTTATT
85181757 TTAATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:85181758 original size:31 final size:30
Alignment explanation
Indices: 85181706--85181776 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 30
85181696 TTATATTTAA
*
85181706 TCTAATTTTTATTATTTATTTTAGTTTTGAT
1 TCTAATTTTTATTATTTATTTTA-ATTTGAT
85181737 TCTATATTTTTATT-TTTATTTTAATTTGAT
1 TCTA-ATTTTTATTATTTATTTTAATTTGAT
*
85181767 TATGAATTTT
1 TCT-AATTTT
85181777 AATAGAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
30 13 0.36
31 14 0.39
32 9 0.25
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.68
Consensus pattern (30 bp):
TCTAATTTTTATTATTTATTTTAATTTGAT
Found at i:85181776 original size:30 final size:31
Alignment explanation
Indices: 85181708--85181776 Score: 88
Period size: 30 Copynumber: 2.2 Consensus size: 31
85181698 ATATTTAATC
* *
85181708 TAATTTTTATTATTTATTTTAGTTTTGATTC
1 TAATTTTTATTATTTATTTTAGATTTGATTA
85181739 TATATTTTTATT-TTTATTTTA-ATTTGATTA
1 TA-ATTTTTATTATTTATTTTAGATTTGATTA
85181769 TGAATTTT
1 T-AATTTT
85181777 AATAGAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 13 0.38
31 12 0.35
32 9 0.26
ACGTcount: A:0.25, C:0.01, G:0.06, T:0.68
Consensus pattern (31 bp):
TAATTTTTATTATTTATTTTAGATTTGATTA
Found at i:85182329 original size:29 final size:30
Alignment explanation
Indices: 85182275--85182335 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 30
85182265 AACTTCATTA
85182275 TTCTCATCTTCATCATTTGGTTGTTTCTTCTC
1 TTCTCATCTTCATCA--TGGTTGTTTCTTCTC
* *
85182307 TTCTCATCTTCATCA-GTTTGTTTGTTCTC
1 TTCTCATCTTCATCATGGTTGTTTCTTCTC
85182336 CATTTGTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 12 0.44
32 15 0.56
ACGTcount: A:0.10, C:0.25, G:0.10, T:0.56
Consensus pattern (30 bp):
TTCTCATCTTCATCATGGTTGTTTCTTCTC
Found at i:85184485 original size:25 final size:25
Alignment explanation
Indices: 85184448--85184506 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
85184438 AAAATATAGA
*
85184448 TTTATAT-TATTTAATAATTAATTAT
1 TTTATATATATTTAATAATTAA-AAT
* *
85184473 TTTATATAT-TTTATTTATTAAAAT
1 TTTATATATATTTAATAATTAAAAT
85184497 TTTATATATA
1 TTTATATATA
85184507 GTCACTTACT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 11 0.38
25 17 0.59
26 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TTTATATATATTTAATAATTAAAAT
Found at i:85184611 original size:18 final size:17
Alignment explanation
Indices: 85184588--85184638 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 17
85184578 TATGTTCTAC
85184588 ATTACATAATATATAAAA
1 ATTACATAATATA-AAAA
* *
85184606 ATTACATAACATAAAAC
1 ATTACATAATATAAAAA
*
85184623 ATTAC-TAATTTAAAAA
1 ATTACATAATATAAAAA
85184639 CGAATTAGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
16 8 0.29
17 8 0.29
18 12 0.43
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (17 bp):
ATTACATAATATAAAAA
Found at i:85185203 original size:44 final size:46
Alignment explanation
Indices: 85185115--85185203 Score: 146
Period size: 44 Copynumber: 2.0 Consensus size: 46
85185105 TGGTTCGCTG
*
85185115 TAATGAAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATA
1 TAATGAAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATA
*
85185161 TAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAAT
1 TAATGAAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
85185204 GGAATAGAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 19 0.46
45 3 0.07
46 19 0.46
ACGTcount: A:0.29, C:0.04, G:0.27, T:0.39
Consensus pattern (46 bp):
TAATGAAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATA
Found at i:85185205 original size:39 final size:42
Alignment explanation
Indices: 85185116--85185220 Score: 126
Period size: 39 Copynumber: 2.5 Consensus size: 42
85185106 GGTTCGCTGT
* *
85185116 AATGAAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATA
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTG---A
85185161 TAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTG-
1 -AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGA
*
85185201 AATGGAATAGAGGTGTAATA
1 AATGGAATAGAGGCGTAATA
85185221 ACATAAGGAA
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
39 18 0.33
44 16 0.29
45 3 0.05
46 18 0.33
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.36
Consensus pattern (42 bp):
AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGA
Found at i:85185383 original size:15 final size:15
Alignment explanation
Indices: 85185363--85185401 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 15
85185353 CATAATTGTT
85185363 ATAAAATATAATTTA
1 ATAAAATATAATTTA
85185378 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
85185395 ATAAAAT
1 ATAAAAT
85185402 TTTTAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
17 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:85185408 original size:17 final size:17
Alignment explanation
Indices: 85185368--85185401 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
85185358 TTGTTATAAA
85185368 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
85185385 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
85185402 TTTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:85185486 original size:26 final size:26
Alignment explanation
Indices: 85185457--85185514 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
85185447 TATGATACTA
*
85185457 AAATATAATTTAA-AATAATTATTATT
1 AAATATAATTTAATAA-AATTATTAAT
*
85185483 AAATATAATTTAATAAAATTGTTAAT
1 AAATATAATTTAATAAAATTATTAAT
85185509 AAATAT
1 AAATAT
85185515 TCTTATATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (26 bp):
AAATATAATTTAATAAAATTATTAAT
Found at i:85185491 original size:100 final size:104
Alignment explanation
Indices: 85185385--85185820 Score: 545
Period size: 100 Copynumber: 4.1 Consensus size: 104
85185375 TTAATAAAAT
85185385 ATATAATTTAAT-AAA-AT-T-TTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAAT
1 ATATAATTTAATAAAATATATATTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAAT
*
85185446 ATATGATACTAAAATATAATTTAAAATAATTATTATTAA
66 ATATAATACTAAAATATAATTTAAAATAATTATTATTAA
*
85185485 ATATAATTTAAT-AAA-AT-T-GTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAAT
1 ATATAATTTAATAAAATATATATTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAAT
* * *
85185546 ATATAATACTAAAATATAATTTAACATAATTGTTATAAA
66 ATATAATACTAAAATATAATTTAAAATAATTATTATTAA
85185585 ATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTA
1 ATATAATTTAAT--AA-A-AT-A--T-AT---A-T-TTAATAAATATTCTTATATGAATTTACTA
85185650 ATAAAATCATAATATATAATACTAAAATATAATTTAAAATAATTATTATTAA
53 ATAAAATCATAATATATAATACTAAAATATAATTTAAAATAATTATTATTAA
85185702 ATATAATTTAATAATAATATATAATTTAATAAAATTCTTATTCTTATATGAATTTAC---TAAAA
1 ATATAATTTAATAA-AATATAT-ATTTAAT-AAA----TATTCTTATATGAATTTACTAATAAAA
85185764 TCATAATATATAATACTATAAAATATAATTT-AAATAATTATTATTAA
59 TCATAATATATAATAC--TAAAATATAATTTAAAATAATTATTATTAA
85185811 ATATAATTTA
1 ATATAATTTA
85185821 TAATCTACTT
Statistics
Matches: 303, Mismatches: 9, Indels: 39
0.86 0.03 0.11
Matches are distributed among these distances:
100 107 0.35
103 1 0.00
104 1 0.00
105 1 0.00
106 5 0.02
107 5 0.02
108 23 0.08
109 27 0.09
110 15 0.05
111 21 0.07
113 1 0.00
114 2 0.01
115 4 0.01
117 90 0.30
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (104 bp):
ATATAATTTAATAAAATATATATTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAAT
ATATAATACTAAAATATAATTTAAAATAATTATTATTAA
Found at i:85185600 original size:15 final size:15
Alignment explanation
Indices: 85185580--85185618 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 15
85185570 CATAATTGTT
85185580 ATAAAATATAATTTA
1 ATAAAATATAATTTA
85185595 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
85185612 ATAAAAT
1 ATAAAAT
85185619 TGTTAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
17 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:85185606 original size:117 final size:117
Alignment explanation
Indices: 85185485--85185824 Score: 533
Period size: 117 Copynumber: 3.0 Consensus size: 117
85185475 TTATTATTAA
85185485 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
1 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
* *
85185550 AATACTAAAATATAATTTAACATAATTGTTATAAAATATAATTTAATAA-AAT
66 AATACTAAAATATAATTTAA-ATAATTATTATTAAATATAATTTAATAATAAT
85185602 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
1 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
85185667 AATACTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAATAAT
66 AATACTAAAATATAATTT-AAATAATTATTATTAAATATAATTTAATAATAAT
*
85185720 ATATAATTTAATAAAA---TT-CT---TATTCTTATATGAATTTAC---TAAAATCATAATATAT
1 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
85185775 AATACTATAAAATATAATTTAAATAATTATTATTAAATATAATTT-ATAAT
66 AATAC--TAAAATATAATTTAAATAATTATTATTAAATATAATTTAATAAT
85185825 CTACTTTATT
Statistics
Matches: 216, Mismatches: 3, Indels: 17
0.92 0.01 0.07
Matches are distributed among these distances:
108 26 0.12
109 25 0.12
110 13 0.06
111 19 0.09
114 1 0.00
115 2 0.01
117 109 0.50
118 21 0.10
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (117 bp):
ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
AATACTAAAATATAATTTAAATAATTATTATTAAATATAATTTAATAATAAT
Found at i:85185625 original size:17 final size:17
Alignment explanation
Indices: 85185585--85185618 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
85185575 TTGTTATAAA
85185585 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
85185602 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
85185619 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:85185690 original size:20 final size:21
Alignment explanation
Indices: 85185651--85185690 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
85185641 AATTTACTAA
*
85185651 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
85185672 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
85185691 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:85185703 original size:26 final size:28
Alignment explanation
Indices: 85185658--85185737 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 28
85185648 TAATAAAATC
85185658 ATAATATATAATACTAAAATATAATTTAA-A
1 ATAATATATAAT--T-AAATATAATTTAATA
*
85185688 ATAAT-TATTATTAAATATAATTTAATA
1 ATAATATATAATTAAATATAATTTAATA
* *
85185715 ATAATATATAATTTAATAAAATT
1 ATAATATATAATTAAATATAATT
85185738 CTTATTCTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
26 13 0.30
27 7 0.16
28 14 0.32
29 5 0.11
30 5 0.11
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (28 bp):
ATAATATATAATTAAATATAATTTAATA
Found at i:85185770 original size:44 final size:41
Alignment explanation
Indices: 85185552--85185770 Score: 104
Period size: 43 Copynumber: 5.3 Consensus size: 41
85185542 TAATATATAA
* * *
85185552 TACTAAAATATAATTTAACATAATTGTTATAAAATATAATT
1 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
* * *
85185593 TAATAAAATATATAATTTAATAA-AATTGTTAATAAATAT--TCT
1 TACT-AAA-ATATAATTTAA-AATAATTATTATTAAATATAAT-T
* * * *
85185635 TA-T---AT-GAATTTACTAATAA-AATCA-TAATATATAA--
1 TACTAAAATATAATTTA-AAATAATTATTATTAA-ATATAATT
85185669 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
1 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
* * **
85185710 TAATAATAATATATAATTTAATAA-AATTCTTATTCTTATATGAATT
1 TACT-A-AA-ATATAATTTAA-AATAATTATTATT-AAATAT-AATT
85185756 TACTAAAATCATAAT
1 TACTAAAAT-ATAAT
85185771 ATATAATACT
Statistics
Matches: 135, Mismatches: 18, Indels: 47
0.68 0.09 0.23
Matches are distributed among these distances:
34 5 0.04
35 15 0.11
36 4 0.03
38 7 0.05
39 15 0.11
40 3 0.02
41 8 0.06
42 7 0.05
43 29 0.21
44 28 0.21
45 7 0.05
46 7 0.05
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (41 bp):
TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
Found at i:85185816 original size:32 final size:32
Alignment explanation
Indices: 85185780--85185843 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
85185770 TATATAATAC
*
85185780 TATAAAATATAATTTAAATAATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
** ** *
85185812 TATAATTTATAATCTACTTTATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
85185844 CTGCAATACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (32 bp):
TATAAAATATAATCTAAATAATTATTATTAAA
Found at i:85188061 original size:28 final size:27
Alignment explanation
Indices: 85188030--85188096 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 27
85188020 AATTACTAAT
85188030 AAAATAATAAATAATTTCCTATGTTTAAA
1 AAAATAATAAA-AA-TTCCTATGTTTAAA
*
85188059 AAAATACA-AAAAATTCCTATTTTTAAA
1 AAAATA-ATAAAAATTCCTATGTTTAAA
85188086 ATAAA-AATAAA
1 A-AAATAATAAA
85188097 CATGCTATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
26 1 0.03
27 18 0.53
28 5 0.15
29 9 0.26
30 1 0.03
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.33
Consensus pattern (27 bp):
AAAATAATAAAAATTCCTATGTTTAAA
Found at i:85194216 original size:3 final size:3
Alignment explanation
Indices: 85194208--85194244 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
85194198 TGAAACTTCC
85194208 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
85194245 ATGTTAGGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:85196676 original size:203 final size:203
Alignment explanation
Indices: 85196327--85196735 Score: 791
Period size: 203 Copynumber: 2.0 Consensus size: 203
85196317 TGTATGATAA
*
85196327 ATACTTGATTTGTTCTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCTGGCTATTAATTCAT
1 ATACTTGATTTGTTCTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCGGCTATTAATTCAT
*
85196392 GATTTGATGTGCTTATGCAGAGGAGGAATAGATCCTGCCTAAGAGTAGATTTGGCATAATTAAGC
66 GATTTGATGTGCTTATGCAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTTGGCATAATTAAGC
85196457 GGAGTTGATCGAACGCCTAAAAATAGGGTTACGAGATTTTGCCAGATTAGGGTGAAACCTAATAT
131 GGAGTTGATCGAACGCCTAAAAATAGGGTTACGAGATTTTGCCAGATTAGGGTGAAACCTAATAT
*
85196522 GGGAGTCC
196 AGGAGTCC
85196530 ATACTTGATTTGTTCTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCGGCTATTAATTCAT
1 ATACTTGATTTGTTCTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCGGCTATTAATTCAT
85196595 GATTTGATGTGCTTATGCAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTTGGCATAATTAAGC
66 GATTTGATGTGCTTATGCAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTTGGCATAATTAAGC
85196660 GGAGTTGATCGAACGCCTAAAAATAGGGTTACGAGATTTTGCCAGATTAGGGTGAAACCTAATAT
131 GGAGTTGATCGAACGCCTAAAAATAGGGTTACGAGATTTTGCCAGATTAGGGTGAAACCTAATAT
85196725 AGGAGTCC
196 AGGAGTCC
85196733 ATA
1 ATA
85196736 GAGTGATTTA
Statistics
Matches: 203, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
203 203 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (203 bp):
ATACTTGATTTGTTCTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCGGCTATTAATTCAT
GATTTGATGTGCTTATGCAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTTGGCATAATTAAGC
GGAGTTGATCGAACGCCTAAAAATAGGGTTACGAGATTTTGCCAGATTAGGGTGAAACCTAATAT
AGGAGTCC
Found at i:85198217 original size:10 final size:11
Alignment explanation
Indices: 85198198--85198229 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
85198188 ATATTTTAAT
85198198 TAATATAATAA
1 TAATATAATAA
85198209 TAA-ATAATAA
1 TAATATAATAA
85198219 -AATATAATAA
1 TAATATAATAA
85198229 T
1 T
85198230 TCATATTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 2 0.11
10 14 0.74
11 3 0.16
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATATAATAA
Found at i:85207920 original size:48 final size:48
Alignment explanation
Indices: 85207838--85207966 Score: 226
Period size: 48 Copynumber: 2.7 Consensus size: 48
85207828 CGTCTCGAGA
85207838 CCGATG-CATGTCCCAGATAT-GTCTTACACTAGCACTAGTTTCAATG
1 CCGATGCCATGTCCCAGATATGGTCTTACACTAGCACTAGTTTCAATG
*
85207884 CCGATGCCATGTCCCAGATATGGTCTTACACTAGCACTCGTTTCAATG
1 CCGATGCCATGTCCCAGATATGGTCTTACACTAGCACTAGTTTCAATG
*
85207932 CCGATGCCATGTCCTAGATATGGTCTTACACTAGC
1 CCGATGCCATGTCCCAGATATGGTCTTACACTAGC
85207967 TCATAATAAT
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
46 6 0.08
47 14 0.18
48 59 0.75
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGATATGGTCTTACACTAGCACTAGTTTCAATG
Done.