Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 258 of 311
Found at i:85922360 original size:20 final size:20
Alignment explanation
Indices: 85922335--85922372 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
85922325 TATAATATAG
85922335 AAAATAAATATTATTTAATA
1 AAAATAAATATTATTTAATA
* *
85922355 AAAATATATATTTTTTAA
1 AAAATAAATATTATTTAA
85922373 AGGTTATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAATAAATATTATTTAATA
Found at i:85922577 original size:43 final size:43
Alignment explanation
Indices: 85922382--85922609 Score: 201
Period size: 43 Copynumber: 5.3 Consensus size: 43
85922372 AAGGTTATAT
** *
85922382 TCTTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGG-TTTGT
1 TCTTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGCCATGG
* * * * * *
85922424 TCTGTAGTGACGTTTGTAAAAAAAGTGCCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGCCATGG
* * * * *
85922467 TTTTTAGCGGCATTTGCGGGAAAAGCGCCGCTAAAGGCCATGG
1 TCTTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGCCATGG
* * *
85922510 TCTTTAGTGGCGTTT-TCGGGAAAAGTGCCGCTAAAGACCATGG
1 TCTTTAGCGGCGTTTGT-GAGAAAAGTGCCGCTAAAGGCCATGG
* * * ** * * *
85922553 TCTTTAGAGGCGTTTGTGAAAAAAGCGTTGCTAAATGTCATGA
1 TCTTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGCCATGG
85922596 TCTTTAGC-GCGTTT
1 TCTTTAGCGGCGTTT
85922610 TTTTAAATAA
Statistics
Matches: 147, Mismatches: 36, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
42 38 0.26
43 108 0.73
44 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGCCATGG
Found at i:85922698 original size:21 final size:21
Alignment explanation
Indices: 85922674--85922729 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
85922664 ATCGCTTGTG
85922674 AAAACGCCGCTAAAGGCAAAA
1 AAAACGCCGCTAAAGGCAAAA
85922695 AAAACGCCGCTAAAGGCAAAA
1 AAAACGCCGCTAAAGGCAAAA
85922716 AAAACGCCGCTAAA
1 AAAACGCCGCTAAA
85922730 AGTCTGTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.52, C:0.25, G:0.18, T:0.05
Consensus pattern (21 bp):
AAAACGCCGCTAAAGGCAAAA
Found at i:85929449 original size:141 final size:141
Alignment explanation
Indices: 85929233--85929490 Score: 385
Period size: 141 Copynumber: 1.8 Consensus size: 141
85929223 TTACCCTCAC
**
85929233 CATTCTGAAACCTTTCTCACTCAACTTGATAGCCTCTCTCACTCAGCCTCTATTACTTGCTTCGC
1 CATTCTGAAACCTTTCTCACTCAACCCGATAGCCTCTCTCACTCAGCCTCTATTACTTGCTTCGC
* * *
85929298 CTCTGGCCACTAGCCCCAAACTCTTCTTGGGCATGCCATAAAGAAAGGCAAGAAGAGAGCTGCCT
66 CTCCGACCACTAGCCCCAAACTCTTCTCGGGCATGCCATAAAGAAAGGCAAGAAGAGAGCTGCCT
85929363 CTGTTTTTCTT
131 CTGTTTTTCTT
* * *
85929374 CATTCTGAAACCTTTGTTACTCAACCCGATAGCC-CTTCTCAC-CTAGCCTCTATTGCTTGCTTC
1 CATTCTGAAACCTTTCTCACTCAACCCGATAGCCTC-TCTCACTC-AGCCTCTATTACTTGCTTC
* * *
85929437 GCTTCCGACCACTAGCTCCAAACTCTTCTCGGGCATGCCATAGAGAAAGGCAAG
64 GCCTCCGACCACTAGCCCCAAACTCTTCTCGGGCATGCCATAAAGAAAGGCAAG
85929491 GAGACAGTCG
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
140 2 0.02
141 102 0.98
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (141 bp):
CATTCTGAAACCTTTCTCACTCAACCCGATAGCCTCTCTCACTCAGCCTCTATTACTTGCTTCGC
CTCCGACCACTAGCCCCAAACTCTTCTCGGGCATGCCATAAAGAAAGGCAAGAAGAGAGCTGCCT
CTGTTTTTCTT
Found at i:85932420 original size:6 final size:6
Alignment explanation
Indices: 85932409--85932471 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
85932399 ATTTAGCCTT
* **
85932409 TTTTAA TTTTAA TTTTAA TATT-- TTTTGT TTTTAA -TTTAA TTGTTACA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TT-TTA-A
*
85932456 TTTTAA TTTTTA TTTT
1 TTTTAA TTTTAA TTTT
85932472 GTTTGATTCT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
4 3 0.06
5 5 0.11
6 30 0.64
7 6 0.13
8 3 0.06
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (6 bp):
TTTTAA
Found at i:85935187 original size:17 final size:17
Alignment explanation
Indices: 85935154--85935187 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
85935144 ATTGAGACTA
85935154 GTCATATATATATACAT
1 GTCATATATATATACAT
85935171 GTCATGATATATA-ACAT
1 GTCAT-ATATATATACAT
85935188 TCTCTTTCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (17 bp):
GTCATATATATATACAT
Found at i:85936449 original size:67 final size:67
Alignment explanation
Indices: 85936305--85936457 Score: 172
Period size: 67 Copynumber: 2.3 Consensus size: 67
85936295 CTAGCCAGTT
* * *
85936305 TATCTTGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACA
1 TATCTTGTAGCTCTCTTGTCTACATGGTGTACTACACTAGGAACCACGCATGCGACCTAGCTACA
85936370 TA
66 TA
** *
85936372 TATCCCGTAGCTCTCTTGTCTACATGGTGTAC-ACA-TAGTATA-C-C-CATGCGACCTAGCTAC
1 TATCTTGTAGCTCTCTTGTCTACATGGTGTACTACACTAGGA-ACCACGCATGCGACCTAGCTAC
85936432 ATCA
65 AT-A
85936436 TAATGTCTTGTAGCTCTCTTGT
1 T-A--TCTTGTAGCTCTCTTGT
85936458 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
63 18 0.25
64 3 0.04
65 5 0.07
66 3 0.04
67 44 0.60
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (67 bp):
TATCTTGTAGCTCTCTTGTCTACATGGTGTACTACACTAGGAACCACGCATGCGACCTAGCTACA
TA
Found at i:85941473 original size:49 final size:50
Alignment explanation
Indices: 85941393--85941625 Score: 274
Period size: 49 Copynumber: 4.7 Consensus size: 50
85941383 ATCTATTGTG
*
85941393 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
* * * *
85941443 -GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAA-TT
* ** * * **
85941493 CGGTCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
* * * *
85941543 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
*
85941593 -GGTCGCATGTGTAGTACTAAGTGC-AGACTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAAG-CTACTA
85941626 TGCGTACCAG
Statistics
Matches: 154, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.01
49 70 0.45
50 45 0.29
51 38 0.25
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
Found at i:85941603 original size:101 final size:98
Alignment explanation
Indices: 85941399--85941638 Score: 272
Period size: 100 Copynumber: 2.4 Consensus size: 98
85941389 TGTGAGGTCA
* * *
85941399 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAG
1 CATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAG
*
85941464 TGCAAGCTACTATGCGTACCCGATAACTTCGGT
66 TGCAAGCTACTACGCGTACCCGATAACTTCGGT
* ** *
85941497 CATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACT
1 CA--TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACT
* * *
85941562 AAGTGCAGGCTACTACGTGTA-CTGAATAA-TT-GGT
63 AAGTGCAAGCTACTACGCGTACCCG-ATAACTTCGGT
* *
85941596 CGCATGTGTAGTACTAAGTGC-AGACTACTATGCGTACCAGATA
1 --CATGTGTAGTACTAAGTGCAAG-CTACTACGTGTACCAGATA
85941639 GCTTTGGCTA
Statistics
Matches: 120, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
98 4 0.03
99 35 0.29
100 41 0.34
101 40 0.33
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (98 bp):
CATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAG
TGCAAGCTACTACGCGTACCCGATAACTTCGGT
Found at i:85941668 original size:150 final size:150
Alignment explanation
Indices: 85941393--85941668 Score: 405
Period size: 150 Copynumber: 1.8 Consensus size: 150
85941383 ATCTATTGTG
*
85941393 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGT
* ** * *
85941458 ACTAAGTGCAAGCTACTATGCGTACCCGATAACTTCGGTCATGTGTGTAGTACTAAGTGCAAGCT
66 ACTAAGTGCAAGCTACTATGCGTACCAGATAACTTCGGTCAAATGTGTAGAAATAAGTGCAAGCT
85941523 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
* *
85941543 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGAATAATTGGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGT
* * *
85941608 ACTAAGTGC-AGACTACTATGCGTACCAGATAGCTTTGGCTACAAATGTG-A-AAATATGTGCA
66 ACTAAGTGCAAG-CTACTATGCGTACCAGATAACTTCGG-T-CAAATGTGTAGAAATAAGTGCA
85941669 GGCAACTGAG
Statistics
Matches: 112, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
149 2 0.02
150 102 0.91
151 2 0.02
152 6 0.05
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (150 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGT
ACTAAGTGCAAGCTACTATGCGTACCAGATAACTTCGGTCAAATGTGTAGAAATAAGTGCAAGCT
ACTACGTGTATCAGATGGTT
Found at i:85948627 original size:45 final size:45
Alignment explanation
Indices: 85948558--85949049 Score: 695
Period size: 45 Copynumber: 11.0 Consensus size: 45
85948548 GGAAAGAACA
*
85948558 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGTTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* *
85948603 GGTGAAATGTTATTCGGGCTTTTGACCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* *
85948648 GGTGAAATGTTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCT
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * *
85948693 GGTGAAATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACG
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
85948738 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* *
85948783 GGTGAAATGTTATTCGGGCCTTTGAGGCTAGCAGGCTATAATACC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* *
85948828 GGTGAAATGTTATTCTGGCCTTTGAGCCTAGCAGACTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * * *
85948873 AGTGAGATATTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* *
85948918 GGTGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* ** * * *
85948963 GGTGAGATACTATTC-GGACTTTCGAGCCTAACAGGCTATAATGCT
1 GGTGAAATGTTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCC
** * *
85949008 GGTGAAATGACA-TCGGGCC-TCGAGCCTAGCAGGCGA-AATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
85949050 AGTAATTTGA
Statistics
Matches: 404, Mismatches: 41, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
42 5 0.01
43 13 0.03
44 9 0.02
45 377 0.93
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
Found at i:85949856 original size:13 final size:13
Alignment explanation
Indices: 85949838--85949862 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85949828 TCGAACCCTG
85949838 TTCCGGCGAGGGA
1 TTCCGGCGAGGGA
85949851 TTCCGGCGAGGG
1 TTCCGGCGAGGG
85949863 GTGTTACAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.48, T:0.16
Consensus pattern (13 bp):
TTCCGGCGAGGGA
Found at i:85952296 original size:12 final size:12
Alignment explanation
Indices: 85952265--85952289 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85952255 AATTTTCCTT
85952265 TCTTTTTCTTTC
1 TCTTTTTCTTTC
85952277 TCTTTTTCTTTC
1 TCTTTTTCTTTC
85952289 T
1 T
85952290 TTCTTTCCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTTTTTCTTTC
Found at i:85952596 original size:78 final size:78
Alignment explanation
Indices: 85952467--85952624 Score: 316
Period size: 78 Copynumber: 2.0 Consensus size: 78
85952457 TTTGTACTAG
85952467 TTAAATTAATACACATGTATTTATACTTACCACACACTTGTCACCTTATGGTATAATTTCTAATT
1 TTAAATTAATACACATGTATTTATACTTACCACACACTTGTCACCTTATGGTATAATTTCTAATT
85952532 TAATCCCTTGAAT
66 TAATCCCTTGAAT
85952545 TTAAATTAATACACATGTATTTATACTTACCACACACTTGTCACCTTATGGTATAATTTCTAATT
1 TTAAATTAATACACATGTATTTATACTTACCACACACTTGTCACCTTATGGTATAATTTCTAATT
85952610 TAATCCCTTGAAT
66 TAATCCCTTGAAT
85952623 TT
1 TT
85952625 TCTCTATTCT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.33, C:0.19, G:0.06, T:0.42
Consensus pattern (78 bp):
TTAAATTAATACACATGTATTTATACTTACCACACACTTGTCACCTTATGGTATAATTTCTAATT
TAATCCCTTGAAT
Found at i:85956217 original size:20 final size:20
Alignment explanation
Indices: 85956192--85956245 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
85956182 ATATATATAC
85956192 TAAATAAAATAATAAAATAA
1 TAAATAAAATAATAAAATAA
*** * *
85956212 TAAATATCTTATTAAAATAT
1 TAAATAAAATAATAAAATAA
85956232 TAAAT-AAATAATAA
1 TAAATAAAATAATAA
85956246 TTATCTAATT
Statistics
Matches: 25, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAATAAAATAATAAAATAA
Found at i:85963174 original size:29 final size:29
Alignment explanation
Indices: 85963137--85963193 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
85963127 ACAGAACGAT
*
85963137 AACGCAAGTAAGTAAAACGTAATATTTCG
1 AACGCAAGTAACTAAAACGTAATATTTCG
*
85963166 AACGTAAGTAACTAAAACGTAATATTTC
1 AACGCAAGTAACTAAAACGTAATATTTC
85963194 AAATATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (29 bp):
AACGCAAGTAACTAAAACGTAATATTTCG
Found at i:85963208 original size:29 final size:29
Alignment explanation
Indices: 85963149--85963219 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
85963139 CGCAAGTAAG
* * *
85963149 TAAAACGTAATATTTCGAACGTAAGTAAC
1 TAAAACGTAATATTTCAAACATAAATAAC
* *
85963178 TAAAACGTAATATTTCAAATATAAATGAC
1 TAAAACGTAATATTTCAAACATAAATAAC
*
85963207 TAAAATGTAATAT
1 TAAAACGTAATAT
85963220 GAGGTAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (29 bp):
TAAAACGTAATATTTCAAACATAAATAAC
Found at i:85963849 original size:27 final size:26
Alignment explanation
Indices: 85963800--85963869 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 26
85963790 TTTAATTAAT
* *
85963800 TTTTTAAAATTTAAAAATATTAAT-T
1 TTTTTAAATTTTAAAAATATTAATGA
* *
85963825 TTTTTATACTTTTAAATAATGTTAATGA
1 TTTTTA-AATTTTAAA-AATATTAATGA
85963853 TTTTTAAATTTTAAAAA
1 TTTTTAAATTTTAAAAA
85963870 CAAGTTTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
25 6 0.16
26 9 0.24
27 16 0.43
28 6 0.16
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (26 bp):
TTTTTAAATTTTAAAAATATTAATGA
Found at i:85969894 original size:30 final size:30
Alignment explanation
Indices: 85969860--85969919 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
85969850 TTTATTAAAA
85969860 TATTAGGTACATTCAAGTGTGATCATTCAT
1 TATTAGGTACATTCAAGTGTGATCATTCAT
**
85969890 TATTAGGTATGTTCAAGTGTGATCATTCAT
1 TATTAGGTACATTCAAGTGTGATCATTCAT
85969920 ATTTAAACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (30 bp):
TATTAGGTACATTCAAGTGTGATCATTCAT
Found at i:85971801 original size:23 final size:23
Alignment explanation
Indices: 85971771--85971817 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
85971761 CACGCGTATT
85971771 TTAGGAAAAATAAATAACTTGGA
1 TTAGGAAAAATAAATAACTTGGA
85971794 TTAGGAAAAATAAATAACTTGGA
1 TTAGGAAAAATAAATAACTTGGA
85971817 T
1 T
85971818 AGATACGGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.04, G:0.17, T:0.28
Consensus pattern (23 bp):
TTAGGAAAAATAAATAACTTGGA
Found at i:85979179 original size:22 final size:22
Alignment explanation
Indices: 85979153--85979233 Score: 99
Period size: 22 Copynumber: 3.6 Consensus size: 22
85979143 TCATATTTTG
* *
85979153 CATATCACATGGTATATGTTCG
1 CATATCACATGGCATATGTTCA
* * *
85979175 CATATCACTTTAGCATAAGTTCA
1 CATATCAC-ATGGCATATGTTCA
*
85979198 CATATCACATGGCATAGGTTCA
1 CATATCACATGGCATATGTTCA
85979220 CATATCACATGGCA
1 CATATCACATGGCA
85979234 ATCACACAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
22 33 0.66
23 17 0.34
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (22 bp):
CATATCACATGGCATATGTTCA
Found at i:85979406 original size:31 final size:32
Alignment explanation
Indices: 85979356--85979416 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
85979346 AGTAAGCTCA
85979356 CACATGGGTAGGTTTCACACAATGGTAAGGCT
1 CACATGGGTAGGTTTCACACAATGGTAAGGCT
*
85979388 CACAT-GGTATGG-TTCACACAGTGGTAAGG
1 CACATGGGTA-GGTTTCACACAATGGTAAGG
85979417 TTTGCACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (32 bp):
CACATGGGTAGGTTTCACACAATGGTAAGGCT
Found at i:85979418 original size:17 final size:16
Alignment explanation
Indices: 85979353--85979440 Score: 58
Period size: 17 Copynumber: 5.4 Consensus size: 16
85979343 ATAAGTAAGC
85979353 TCACACATGGGT-AGGTT
1 TCACACAT-GGTAAGG-T
85979370 TCACACAATGGTAAGG-
1 TCACAC-ATGGTAAGGT
* *
85979386 -CTCACATGGTATGGT
1 TCACACATGGTAAGGT
85979401 TCACACAGTGGTAAGGT
1 TCACACA-TGGTAAGGT
** *
85979418 TTGCACATAGGT-AGAT
1 TCACACAT-GGTAAGGT
85979434 TCACACA
1 TCACACA
85979441 AGGATTTGAC
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
14 8 0.14
15 4 0.07
16 14 0.25
17 25 0.45
18 5 0.09
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (16 bp):
TCACACATGGTAAGGT
Found at i:85979437 original size:33 final size:31
Alignment explanation
Indices: 85979369--85979441 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 31
85979359 ATGGGTAGGT
*
85979369 TTCACACAATGGTAAGGCTCACATGGTATGG
1 TTCACACAATGGTAAGGCTCACATGGTATGA
* *
85979400 TTCACACAGTGGTAAGGTTTGCACATAGGTA-GA
1 TTCACACAATGGTAAGG-CT-CACAT-GGTATGA
85979433 TTCACACAA
1 TTCACACAA
85979442 GGATTTGACT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
31 16 0.46
32 1 0.03
33 14 0.40
34 4 0.11
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (31 bp):
TTCACACAATGGTAAGGCTCACATGGTATGA
Found at i:85979528 original size:23 final size:22
Alignment explanation
Indices: 85979478--85979603 Score: 91
Period size: 24 Copynumber: 5.5 Consensus size: 22
85979468 TCGCATGGTA
*
85979478 TGGTGA-ATGGGTTCACATATA-
1 TGGTGATA-GGGTTCACATGTAC
* *
85979499 AGGTGATAGGGTTCTCATGTCAC
1 TGGTGATAGGGTTCACATGT-AC
85979522 TGGTGATAGGGGTTCACACATG-AC
1 TGGTGATA-GGGTT--CACATGTAC
85979546 TGGTGATAAGGGTTTGCACATGT-C
1 TGGTGAT-AGGG-TT-CACATGTAC
85979570 TGGTGATAGGGGTTTGCACATGT-C
1 TGGTGATA-GGG-TT-CACATGTAC
85979594 TGGTGATAGG
1 TGGTGATAGG
85979604 TGGTTATATA
Statistics
Matches: 89, Mismatches: 6, Indels: 18
0.79 0.05 0.16
Matches are distributed among these distances:
21 15 0.17
22 2 0.02
23 10 0.11
24 54 0.61
25 3 0.03
26 5 0.06
ACGTcount: A:0.22, C:0.13, G:0.34, T:0.31
Consensus pattern (22 bp):
TGGTGATAGGGTTCACATGTAC
Found at i:85979547 original size:24 final size:24
Alignment explanation
Indices: 85979520--85979608 Score: 124
Period size: 24 Copynumber: 3.7 Consensus size: 24
85979510 TTCTCATGTC
**
85979520 ACTGGTGATAGGGGTTCACACATG
1 ACTGGTGATAGGGGTTTGCACATG
*
85979544 ACTGGTGATAAGGGTTTGCACATG
1 ACTGGTGATAGGGGTTTGCACATG
*
85979568 TCTGGTGATAGGGGTTTGCACATG
1 ACTGGTGATAGGGGTTTGCACATG
*
85979592 TCTGGTGATAGGTGGTT
1 ACTGGTGATAGG-GGTT
85979609 ATATACTAAC
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
24 55 0.93
25 4 0.07
ACGTcount: A:0.20, C:0.12, G:0.36, T:0.31
Consensus pattern (24 bp):
ACTGGTGATAGGGGTTTGCACATG
Found at i:85979676 original size:22 final size:22
Alignment explanation
Indices: 85979648--85979708 Score: 95
Period size: 22 Copynumber: 2.8 Consensus size: 22
85979638 AGCAATGTAG
*
85979648 GGGTTCGTATATTAATTTATCA
1 GGGTTCGCATATTAATTTATCA
85979670 GGGTTCGCATATTAATTTATCA
1 GGGTTCGCATATTAATTTATCA
**
85979692 GGGTTTACATATTAATT
1 GGGTTCGCATATTAATT
85979709 AAGTAGGGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.28, C:0.10, G:0.18, T:0.44
Consensus pattern (22 bp):
GGGTTCGCATATTAATTTATCA
Found at i:85980894 original size:32 final size:31
Alignment explanation
Indices: 85980830--85980895 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
85980820 CCTAAAACTT
* * *
85980830 TTAATTCTAATTATTTTAATATTTTATTTAA
1 TTAATTCTAATTATTTTAATATCTAATCTAA
85980861 TTAATTACTAATTA-TTTAATTATCTAATCTAA
1 TTAATT-CTAATTATTTTAA-TATCTAATCTAA
85980893 TTA
1 TTA
85980896 CGGGCTCTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 11 0.37
32 19 0.63
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (31 bp):
TTAATTCTAATTATTTTAATATCTAATCTAA
Found at i:85985363 original size:3 final size:3
Alignment explanation
Indices: 85985351--85985389 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
85985341 TATTAGATTA
*
85985351 ATT A-T ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
85985390 AATAAATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:85985554 original size:25 final size:25
Alignment explanation
Indices: 85985526--85985573 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
85985516 AGATAAAAAG
*
85985526 TATATTATAAATTAAATTAAATTAT
1 TATATTATAAAATAAATTAAATTAT
*
85985551 TATATTATAAAATAAATTGAATT
1 TATATTATAAAATAAATTAAATT
85985574 GTAACAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
TATATTATAAAATAAATTAAATTAT
Found at i:85988062 original size:21 final size:21
Alignment explanation
Indices: 85988033--85988072 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
85988023 ACATTCATCC
*
85988033 ATAAAAATTTTAACTTGACCT
1 ATAAAAATTTCAACTTGACCT
*
85988054 ATAATAATTTCAACTTGAC
1 ATAAAAATTTCAACTTGAC
85988073 AAGTGGTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (21 bp):
ATAAAAATTTCAACTTGACCT
Found at i:85989391 original size:23 final size:22
Alignment explanation
Indices: 85989363--85989423 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 22
85989353 AAAAATATTT
85989363 TTAAAATAATATTTATTATTTTG
1 TTAAAATAATATTT-TTATTTTG
*
85989386 TTAAAATAATAATTTTTGTTTTG
1 TTAAAATAAT-ATTTTTATTTTG
*
85989409 TT-AAAGAATATTTTT
1 TTAAAATAATATTTTT
85989424 TTATAATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 6 0.17
22 6 0.17
23 19 0.54
24 4 0.11
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (22 bp):
TTAAAATAATATTTTTATTTTG
Found at i:85994582 original size:19 final size:19
Alignment explanation
Indices: 85994560--85994613 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
85994550 AAAACTAAGA
85994560 TAAAAACTAAAATTAAAAT-
1 TAAAAA-TAAAATTAAAATG
*
85994579 TAAAAATAATAAATAAAATG
1 TAAAAATAA-AATTAAAATG
*
85994599 AAAAAAATAAAATTA
1 -TAAAAATAAAATTA
85994614 TCGACACTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 3 0.10
19 14 0.48
20 4 0.14
21 8 0.28
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (19 bp):
TAAAAATAAAATTAAAATG
Found at i:85995448 original size:11 final size:11
Alignment explanation
Indices: 85995424--85995454 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
85995414 GACTTACAAC
85995424 ACATTTATACAT
1 ACATTTA-ACAT
85995436 ACATTTAACAT
1 ACATTTAACAT
85995447 ACATTTAA
1 ACATTTAA
85995455 TCAAATCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (11 bp):
ACATTTAACAT
Found at i:85999380 original size:93 final size:93
Alignment explanation
Indices: 85999267--85999438 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85999257 CGCCCATAAG
* *
85999267 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85999332 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
85999360 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85999425 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
85999439 TCAATCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85999435 original size:46 final size:46
Alignment explanation
Indices: 85999260--85999435 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
85999250 TGTAACCCGC
* * *
85999260 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
85999306 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
85999356 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85999399 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85999436 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:86016315 original size:10 final size:10
Alignment explanation
Indices: 86016300--86016337 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
86016290 ATTTAAGTTT
86016300 TTATTTTCTC
1 TTATTTTCTC
*
86016310 TTATTTTCTA
1 TTATTTTCTC
*
86016320 AT-TTTTCTC
1 TTATTTTCTC
86016329 TTATTTTCT
1 TTATTTTCT
86016338 TCTGACAGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
9 7 0.30
10 16 0.70
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (10 bp):
TTATTTTCTC
Found at i:86027803 original size:10 final size:10
Alignment explanation
Indices: 86027790--86027822 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
86027780 TACTTTTAAA
86027790 TATTAAAAAT
1 TATTAAAAAT
86027800 TATTAAAAAT
1 TATTAAAAAT
86027810 T-TATAAAAAT
1 TAT-TAAAAAT
86027820 TAT
1 TAT
86027823 AATTTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 1 0.05
10 19 0.90
11 1 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
TATTAAAAAT
Found at i:86027988 original size:25 final size:27
Alignment explanation
Indices: 86027951--86028007 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
86027941 ATTTTAAATT
86027951 TTTTATAACTTTTTTA-TAA-TTAT-AA
1 TTTTATAA-TTTTTTAGTAATTTATAAA
*
86027976 TTTTATGATTTTTTAGTAATTTATAAA
1 TTTTATAATTTTTTAGTAATTTATAAA
86028003 TTTTA
1 TTTTA
86028008 AAAGGGCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 7 0.25
25 10 0.36
26 4 0.14
27 7 0.25
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (27 bp):
TTTTATAATTTTTTAGTAATTTATAAA
Found at i:86035380 original size:40 final size:41
Alignment explanation
Indices: 86035317--86035410 Score: 122
Period size: 40 Copynumber: 2.3 Consensus size: 41
86035307 CTATGTTCGT
*
86035317 CACTAAGTGTGCG-GTTCGAAATAGCTTCGGCTACA-AATGG
1 CACTAAGTGTGCGAGTTCGAAATAGCTTCAGCTACATAA-GG
* * *
86035357 CACTAAGTGTGCGAGTT-GGAATAGCTTCAGCTATATGAGG
1 CACTAAGTGTGCGAGTTCGAAATAGCTTCAGCTACATAAGG
86035397 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
86035411 TACCGAGATA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 44 0.92
41 4 0.08
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (41 bp):
CACTAAGTGTGCGAGTTCGAAATAGCTTCAGCTACATAAGG
Found at i:86039153 original size:18 final size:18
Alignment explanation
Indices: 86039130--86039170 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
86039120 AAATTGTTTT
86039130 AAACTATGGACTAAGATA
1 AAACTATGGACTAAGATA
86039148 AAACTATGGACTAAGATA
1 AAACTATGGACTAAGATA
86039166 AAACT
1 AAACT
86039171 TTGATTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.51, C:0.12, G:0.15, T:0.22
Consensus pattern (18 bp):
AAACTATGGACTAAGATA
Found at i:86040421 original size:16 final size:16
Alignment explanation
Indices: 86040400--86040449 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
86040390 TTTGGATCGA
86040400 ATTTTAAATTTTTTTT
1 ATTTTAAATTTTTTTT
*
86040416 ATTTT-ATTTTATTTTT
1 ATTTTAAATTT-TTTTT
* *
86040432 A-TATAAATTTTATTT
1 ATTTTAAATTTTTTTT
86040447 ATT
1 ATT
86040450 CGATTTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
15 11 0.41
16 16 0.59
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
ATTTTAAATTTTTTTT
Found at i:86048300 original size:5 final size:5
Alignment explanation
Indices: 86048285--86048316 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
86048275 TAACCTTACT
86048285 ATAATA ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAA-A ATAAA ATAAA ATAAA ATAAA ATAAA A
86048317 AAGGAAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:86049816 original size:13 final size:13
Alignment explanation
Indices: 86049793--86049831 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
86049783 AATTTATGTT
*
86049793 TAAAGAATAAAGAA
1 TAAA-AATAAAAAA
86049807 TAAAAATAAAAAA
1 TAAAAATAAAAAA
86049820 TAAAAATAAAAA
1 TAAAAATAAAAA
86049832 CTAAGAGACA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:86049824 original size:5 final size:6
Alignment explanation
Indices: 86049793--86049831 Score: 51
Period size: 7 Copynumber: 6.0 Consensus size: 6
86049783 AATTTATGTT
86049793 TAAAGAA TAAAGAA TAAAAA TAAAAAA TAAAAA TAAAAA
1 TAAA-AA TAAA-AA TAAAAA T-AAAAA TAAAAA TAAAAA
86049832 CTAAGAGACA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 14 0.45
7 17 0.55
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (6 bp):
TAAAAA
Found at i:86050841 original size:3 final size:3
Alignment explanation
Indices: 86050835--86050863 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
86050825 TTGCGGCGGC
86050835 GTT GTT GTT GTT GTT GTT GTT GTT GTT GT
1 GTT GTT GTT GTT GTT GTT GTT GTT GTT GT
86050864 CGGGAGGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.34, T:0.66
Consensus pattern (3 bp):
GTT
Found at i:86053830 original size:3 final size:3
Alignment explanation
Indices: 86053822--86053859 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
86053812 ATTAATTTCT
86053822 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
86053860 TATCTGATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:86055255 original size:20 final size:19
Alignment explanation
Indices: 86055222--86055262 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
86055212 CAATTTATAT
*
86055222 TTTATAATAATTAATTTTA
1 TTTATAATAATTAAATTTA
*
86055241 TTTATAATTAGTTAAATTTA
1 TTTATAA-TAATTAAATTTA
86055261 TT
1 TT
86055263 GTTTTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
TTTATAATAATTAAATTTA
Found at i:86058842 original size:31 final size:30
Alignment explanation
Indices: 86058804--86058877 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 30
86058794 ATTTAAAGGT
86058804 AGAGTGACTAAAATTAACAACTTATCTAAC
1 AGAGTGACTAAAATTAACAACTTATCTAAC
* *
86058834 AAGAGTGACTAAAATTGACAATTTATCTAAC
1 -AGAGTGACTAAAATTAACAACTTATCTAAC
*
86058865 GGAAGTGACTAAA
1 AG-AGTGACTAAA
86058878 TAACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
30 1 0.03
31 38 0.97
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.26
Consensus pattern (30 bp):
AGAGTGACTAAAATTAACAACTTATCTAAC
Found at i:86062043 original size:97 final size:98
Alignment explanation
Indices: 86061876--86062054 Score: 220
Period size: 97 Copynumber: 1.8 Consensus size: 98
86061866 AATATAACTT
* * **
86061876 ATTTAAAATATGTAAAGTTAATTTAGTGATTTTCTTGACCGAGTTGGTGTCAAGCTGACTTCTGA
1 ATTTAAAATATATAAAGTTAATTTAGTGATTTTCTTAACCGAGTTGGTGTCAAGCTGAAATCTGA
86061941 GACTAACTC-ATCACACTCAAAAAATAATATAG
66 GACTAACTCAATCACACTCAAAAAATAATATAG
* * * ** *
86061973 ATTTAAAATATATAATGTTATTTTAGT-ATTTTCCTTAACTGAGTTGGTGTCCTG-TTAAATCGT
1 ATTTAAAATATATAAAGTTAATTTAGTGATTTT-CTTAACCGAGTTGGTGTCAAGCTGAAATC-T
*
86062036 GATACTAACTCAATCACAC
64 GAGACTAACTCAATCACAC
86062055 ACTTAAATAA
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
96 9 0.13
97 52 0.76
98 7 0.10
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (98 bp):
ATTTAAAATATATAAAGTTAATTTAGTGATTTTCTTAACCGAGTTGGTGTCAAGCTGAAATCTGA
GACTAACTCAATCACACTCAAAAAATAATATAG
Found at i:86070558 original size:6 final size:6
Alignment explanation
Indices: 86070544--86070651 Score: 65
Period size: 6 Copynumber: 17.3 Consensus size: 6
86070534 ATAAGAAAAT
* * * * * * *
86070544 AACACA AACATA AACAGA AAAATA AAAATA AAAATAA AAGATAA AAGATAA
1 AACATA AACATA AACATA AACATA AACATA AACAT-A AACAT-A AACAT-A
* * * *
86070595 AAGATA AAAATAA AAGATA AA-AGTA AAGATA AACATA AACATA AACATA
1 AACATA AACAT-A AACATA AACA-TA AACATA AACATA AACATA AACATA
86070644 AACATA AA
1 AACATA AA
86070652 AAAAAATCAG
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
5 1 0.01
6 64 0.71
7 25 0.28
ACGTcount: A:0.72, C:0.07, G:0.06, T:0.14
Consensus pattern (6 bp):
AACATA
Found at i:86070587 original size:13 final size:13
Alignment explanation
Indices: 86070561--86070633 Score: 105
Period size: 13 Copynumber: 5.7 Consensus size: 13
86070551 ACATAAACAG
86070561 AAAAATAAAA-AT
1 AAAAATAAAAGAT
86070573 AAAAATAAAAGAT
1 AAAAATAAAAGAT
86070586 AAAAGATAAAAGAT
1 AAAA-ATAAAAGAT
86070600 AAAAATAAAAGAT
1 AAAAATAAAAGAT
*
86070613 AAAAGT-AAAGAT
1 AAAAATAAAAGAT
*
86070625 AAACATAAA
1 AAAAATAAA
86070634 CATAAACATA
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
12 20 0.36
13 22 0.40
14 13 0.24
ACGTcount: A:0.75, C:0.01, G:0.08, T:0.15
Consensus pattern (13 bp):
AAAAATAAAAGAT
Found at i:86070617 original size:7 final size:7
Alignment explanation
Indices: 86070561--86070627 Score: 92
Period size: 7 Copynumber: 10.4 Consensus size: 7
86070551 ACATAAACAG
86070561 AAAA-AT
1 AAAAGAT
86070567 AAAA-AT
1 AAAAGAT
86070573 AAAA-AT
1 AAAAGAT
86070579 AAAAGAT
1 AAAAGAT
86070586 AAAAGAT
1 AAAAGAT
86070593 AAAAGAT
1 AAAAGAT
86070600 AAAA-AT
1 AAAAGAT
86070606 AAAAGAT
1 AAAAGAT
86070613 AAAAG-T
1 AAAAGAT
86070619 -AAAGAT
1 AAAAGAT
86070625 AAA
1 AAA
86070628 CATAAACATA
Statistics
Matches: 57, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
5 4 0.07
6 24 0.42
7 29 0.51
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (7 bp):
AAAAGAT
Found at i:86076296 original size:25 final size:25
Alignment explanation
Indices: 86076253--86076301 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
86076243 TAAATAGAAA
* *
86076253 ATTTTAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAATAAAT-AAATAC
86076279 ATTTAAAAACATAA-AAATAAATA
1 ATTTAAAAACATAATAAATAAATA
86076302 TTAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 4 0.19
26 12 0.57
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (25 bp):
ATTTAAAAACATAATAAATAAATAC
Found at i:86076563 original size:11 final size:10
Alignment explanation
Indices: 86076534--86076595 Score: 63
Period size: 11 Copynumber: 6.0 Consensus size: 10
86076524 AAAGTAGCAG
*
86076534 CAAAACAGCA
1 CAAAACAACA
86076544 CCAAAACAACA
1 -CAAAACAACA
86076555 TCAAAACAACA
1 -CAAAACAACA
*
86076566 CTAAACAACAA
1 CAAAACAAC-A
*
86076577 CAAAAGAACA
1 CAAAACAACA
86076587 CAAAA-AACA
1 CAAAACAACA
86076596 ACATCACCAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
9 4 0.09
10 14 0.31
11 27 0.60
ACGTcount: A:0.66, C:0.27, G:0.03, T:0.03
Consensus pattern (10 bp):
CAAAACAACA
Found at i:86076573 original size:10 final size:11
Alignment explanation
Indices: 86076534--86076616 Score: 62
Period size: 11 Copynumber: 7.5 Consensus size: 11
86076524 AAAGTAGCAG
* *
86076534 CAAAACAGCAC
1 CAAAACAACAT
86076545 CAAAACAACAT
1 CAAAACAACAT
86076556 CAAAACAACA-
1 CAAAACAACAT
* *
86076566 CTAAACAACAA
1 CAAAACAACAT
*
86076577 CAAAAGAACA-
1 CAAAACAACAT
86076587 CAAAAAACAACAT
1 C--AAAACAACAT
* *
86076600 CACCAACAACAC
1 CA-AAACAACAT
86076612 CAAAA
1 CAAAA
86076617 ACCTGCAAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
10 10 0.17
11 30 0.52
12 17 0.29
13 1 0.02
ACGTcount: A:0.64, C:0.30, G:0.02, T:0.04
Consensus pattern (11 bp):
CAAAACAACAT
Found at i:86076573 original size:21 final size:22
Alignment explanation
Indices: 86076534--86076618 Score: 82
Period size: 21 Copynumber: 3.8 Consensus size: 22
86076524 AAAGTAGCAG
* *
86076534 CAAAACAGCACCAAAACAACAT
1 CAAAACAACACAAAAACAACAT
* *
86076556 CAAAACAACAC-TAAACAACAA
1 CAAAACAACACAAAAACAACAT
*
86076577 CAAAAGAACACAAAAAACAACAT
1 CAAAACAACAC-AAAAACAACAT
*
86076600 CACCAACAACACCAAAAAC
1 CA-AAACAACA-CAAAAAC
86076619 CTGCAAAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
21 18 0.35
22 10 0.20
23 10 0.20
24 12 0.24
25 1 0.02
ACGTcount: A:0.64, C:0.31, G:0.02, T:0.04
Consensus pattern (22 bp):
CAAAACAACACAAAAACAACAT
Found at i:86076581 original size:32 final size:30
Alignment explanation
Indices: 86076536--86076595 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
86076526 AGTAGCAGCA
* *
86076536 AAACAGCACCAAAACAACATCAAAACAACACT
1 AAACAACAACAAAACAACA-CAAAA-AACACT
*
86076568 AAACAACAACAAAAGAACACAAAAAACA
1 AAACAACAACAAAACAACACAAAAAACA
86076596 ACATCACCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 4 0.16
31 5 0.20
32 16 0.64
ACGTcount: A:0.67, C:0.27, G:0.03, T:0.03
Consensus pattern (30 bp):
AAACAACAACAAAACAACACAAAAAACACT
Found at i:86082166 original size:22 final size:21
Alignment explanation
Indices: 86082123--86082185 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
86082113 AAATATGTCG
86082123 AAGAAA-ATTAAAAAAAAT--A
1 AAGAAACA-TAAAAAAAATAAA
*
86082142 AAGCAAC-TAAAACAAAATTAAA
1 AAGAAACATAAAA-AAAA-TAAA
86082164 AAGAAACATAAAAAAAATAAA
1 AAGAAACATAAAAAAAATAAA
86082185 A
1 A
86082186 CAACAATAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
18 5 0.14
19 9 0.25
20 1 0.03
21 5 0.14
22 11 0.31
23 5 0.14
ACGTcount: A:0.76, C:0.06, G:0.05, T:0.13
Consensus pattern (21 bp):
AAGAAACATAAAAAAAATAAA
Found at i:86082313 original size:24 final size:24
Alignment explanation
Indices: 86082286--86082375 Score: 69
Period size: 23 Copynumber: 3.6 Consensus size: 24
86082276 AATTTAGAAT
*
86082286 ATAAGTATAAGAATAATAAATAAA
1 ATAAGTATAAAAATAATAAATAAA
* *
86082310 ATAAAAAGTTTAATACAATAAAAAATAAA
1 AT---AAGTATAA-A-AATAATAAATAAA
86082339 A-AA-TATAATAAATAATAAATAAA
1 ATAAGTATAA-AAATAATAAATAAA
*
86082362 ATAA-AATAAAAATA
1 ATAAGTATAAAAATA
86082376 GGGTGATTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
23 18 0.33
24 14 0.26
25 2 0.04
27 7 0.13
29 13 0.24
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.24
Consensus pattern (24 bp):
ATAAGTATAAAAATAATAAATAAA
Found at i:86082343 original size:19 final size:21
Alignment explanation
Indices: 86082321--86082373 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 21
86082311 TAAAAAGTTT
*
86082321 AATACAATAAAAAAT-AA-AA
1 AATAAAATAAAAAATAAATAA
* *
86082340 AATATAATAAATAATAAATAA
1 AATAAAATAAAAAATAAATAA
86082361 AATAAAATAAAAA
1 AATAAAATAAAAA
86082374 TAGGGTGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 13 0.46
20 2 0.07
21 13 0.46
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (21 bp):
AATAAAATAAAAAATAAATAA
Found at i:86082346 original size:16 final size:16
Alignment explanation
Indices: 86082327--86082373 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
86082317 GTTTAATACA
86082327 ATAAAAAATAAAAAAT
1 ATAAAAAATAAAAAAT
* *
86082343 ATAATAAATAATAAAT
1 ATAAAAAATAAAAAAT
*
86082359 AAAATAAAATAAAAA
1 ATAA-AAAATAAAAA
86082374 TAGGGTGATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
ATAAAAAATAAAAAAT
Found at i:86084008 original size:21 final size:21
Alignment explanation
Indices: 86083982--86084034 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
86083972 TTTTGCTTAT
86083982 CTTGACTTACCTCAATCTTTC
1 CTTGACTTACCTCAATCTTTC
86084003 CTTGACTTACCTCAATCTTTC
1 CTTGACTTACCTCAATCTTTC
86084024 CTTGACTTACC
1 CTTGACTTACC
86084035 ACATTTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.19, C:0.34, G:0.06, T:0.42
Consensus pattern (21 bp):
CTTGACTTACCTCAATCTTTC
Found at i:86088792 original size:65 final size:64
Alignment explanation
Indices: 86088712--86088839 Score: 220
Period size: 65 Copynumber: 2.0 Consensus size: 64
86088702 TAAATCAACA
*
86088712 ATATACAAACATTATAATACAGAATGCTGGAATCTACATTCGATACTTGAAGAAAAATAGGGTGT
1 ATATACAAACATTATAATACAGAATGCTGGAACCTACATTCGATACTT-AAGAAAAATAGGGTGT
* *
86088777 ATATACAAACATTATAATACAGAATGTTGGAACCTACATTCGATGCTTAAGAAAAATAGGGTG
1 ATATACAAACATTATAATACAGAATGCTGGAACCTACATTCGATACTTAAGAAAAATAGGGTG
86088840 CGTAAGTGGT
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
64 15 0.25
65 45 0.75
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.27
Consensus pattern (64 bp):
ATATACAAACATTATAATACAGAATGCTGGAACCTACATTCGATACTTAAGAAAAATAGGGTGT
Found at i:86094730 original size:21 final size:21
Alignment explanation
Indices: 86094706--86094767 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
86094696 TAGATTTAAG
86094706 ATATAGTAAAATGT-TAAAAAA
1 ATATAGTAAAAT-TATAAAAAA
* *
86094727 ATATATTAAGATTATAAAAAA
1 ATATAGTAAAATTATAAAAAA
* *
86094748 AAAAAG-ATAAATTATAAAAA
1 ATATAGTA-AAATTATAAAAA
86094768 TAGTCACTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
20 2 0.06
21 31 0.94
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.27
Consensus pattern (21 bp):
ATATAGTAAAATTATAAAAAA
Found at i:86095374 original size:13 final size:15
Alignment explanation
Indices: 86095352--86095387 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
86095342 ACCAATTTGT
86095352 AACATATA-TTTTAA
1 AACATATATTTTTAA
86095366 AACAT-TATTTTTAA
1 AACATATATTTTTAA
86095380 AA-ATATAT
1 AACATATAT
86095388 AGTTAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
AACATATATTTTTAA
Found at i:86099025 original size:80 final size:80
Alignment explanation
Indices: 86098892--86099052 Score: 322
Period size: 80 Copynumber: 2.0 Consensus size: 80
86098882 TCAAACTAAC
86098892 AAAACAAGGCAACTCCAATATAAGTACCGCAAACGGTGAGACTTGTGTTGCCATTGACCAGTCAA
1 AAAACAAGGCAACTCCAATATAAGTACCGCAAACGGTGAGACTTGTGTTGCCATTGACCAGTCAA
86098957 TTTCATTCTTAGTTT
66 TTTCATTCTTAGTTT
86098972 AAAACAAGGCAACTCCAATATAAGTACCGCAAACGGTGAGACTTGTGTTGCCATTGACCAGTCAA
1 AAAACAAGGCAACTCCAATATAAGTACCGCAAACGGTGAGACTTGTGTTGCCATTGACCAGTCAA
86099037 TTTCATTCTTAGTTT
66 TTTCATTCTTAGTTT
86099052 A
1 A
86099053 CATCAATAAG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (80 bp):
AAAACAAGGCAACTCCAATATAAGTACCGCAAACGGTGAGACTTGTGTTGCCATTGACCAGTCAA
TTTCATTCTTAGTTT
Found at i:86100421 original size:28 final size:28
Alignment explanation
Indices: 86100381--86100443 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
86100371 GTCATTATCA
*
86100381 ACCCTATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
86100409 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
*
86100437 ATCCCAT
1 ACCCCAT
86100444 TAATATGGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:86105767 original size:28 final size:28
Alignment explanation
Indices: 86105727--86105789 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
86105717 GTCATTATCA
86105727 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
86105755 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
86105783 ACCCCAT
1 ACCCCAT
86105790 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:86106286 original size:21 final size:21
Alignment explanation
Indices: 86106259--86106313 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
86106249 ATAGCGGTGG
*
86106259 CGGTGAGATTAGTTACTGTAA
1 CGGTGAGATTAGATACTGTAA
* * *
86106280 TGGTGAGATTGGATACTGTAG
1 CGGTGAGATTAGATACTGTAA
86106301 CGGTGAGATTAGA
1 CGGTGAGATTAGA
86106314 AACAATGGTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.27, C:0.07, G:0.35, T:0.31
Consensus pattern (21 bp):
CGGTGAGATTAGATACTGTAA
Found at i:86107049 original size:95 final size:95
Alignment explanation
Indices: 86106891--86107084 Score: 363
Period size: 95 Copynumber: 2.0 Consensus size: 95
86106881 AAATAACACT
86106891 CAATCTCACCACACCACAGAAAAACGGGCATCCAAAGGAGCCCTTAATCTAACCAATTGCTGTCG
1 CAATCTCACCACACCACAGAAAAACGGGCATCCAAAGGAGCCCTTAATCTAACCAATTGCTGTCG
86106956 TGTAGAAAAGAAGAGTAATCCCCATAAATA
66 TGTAGAAAAGAAGAGTAATCCCCATAAATA
*
86106986 CAATCTCACCACACCACAGAAAAACGGGCATCCAAAGGAGCCCTTAATCTAA-CATGTTGCTGTC
1 CAATCTCACCACACCACAGAAAAACGGGCATCCAAAGGAGCCCTTAATCTAACCA-ATTGCTGTC
86107050 GTGTAGAAAAGAAGAGTAATCCCCATAAATA
65 GTGTAGAAAAGAAGAGTAATCCCCATAAATA
86107081 CAAT
1 CAAT
86107085 TTTATTATTT
Statistics
Matches: 97, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
94 2 0.02
95 95 0.98
ACGTcount: A:0.40, C:0.26, G:0.16, T:0.19
Consensus pattern (95 bp):
CAATCTCACCACACCACAGAAAAACGGGCATCCAAAGGAGCCCTTAATCTAACCAATTGCTGTCG
TGTAGAAAAGAAGAGTAATCCCCATAAATA
Found at i:86120656 original size:25 final size:25
Alignment explanation
Indices: 86120622--86120677 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
86120612 AATAGTATCT
86120622 TCACTGGCTGCAGCAAACTTGAAGG
1 TCACTGGCTGCAGCAAACTTGAAGG
86120647 TCACTGGCTGCAGCAAACTTGAAGG
1 TCACTGGCTGCAGCAAACTTGAAGG
*
86120672 TAACTG
1 TCACTG
86120678 ATGCTCAGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (25 bp):
TCACTGGCTGCAGCAAACTTGAAGG
Found at i:86134962 original size:33 final size:33
Alignment explanation
Indices: 86134924--86134990 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
86134914 AAATTAGGGG
*
86134924 TTTTCTTATTTCCTTTTTTTTGGAAAAAATTCT
1 TTTTCTTATTTCCTTCTTTTTGGAAAAAATTCT
* *
86134957 TTTTCTTATTTCCTTCTTTTTGGCAAAATTTCT
1 TTTTCTTATTTCCTTCTTTTTGGAAAAAATTCT
86134990 T
1 T
86134991 CTCTTTCGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.18, C:0.15, G:0.06, T:0.61
Consensus pattern (33 bp):
TTTTCTTATTTCCTTCTTTTTGGAAAAAATTCT
Found at i:86136177 original size:38 final size:38
Alignment explanation
Indices: 86136084--86136179 Score: 120
Period size: 40 Copynumber: 2.5 Consensus size: 38
86136074 GCGGTACCTT
* *
86136084 ATGGTGTGTAGGGCTGGATGGGTTGATTAAATCCCCAT
1 ATGGTGTGTAGGGTTGGATGGGTTGATTAAATCCCCAC
* **
86136122 ACTCGGTGTGTAGGGTTGGGTGGGTTGATTCTATCCCCAC
1 A-T-GGTGTGTAGGGTTGGATGGGTTGATTAAATCCCCAC
*
86136162 ATGGTGTGTTGGGTTGGA
1 ATGGTGTGTAGGGTTGGA
86136180 CGGAGATAGT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
38 15 0.31
39 2 0.04
40 32 0.65
ACGTcount: A:0.16, C:0.14, G:0.38, T:0.33
Consensus pattern (38 bp):
ATGGTGTGTAGGGTTGGATGGGTTGATTAAATCCCCAC
Found at i:86143268 original size:15 final size:15
Alignment explanation
Indices: 86143250--86143278 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
86143240 GACTCTATTT
86143250 TATTAAGATAATTAA
1 TATTAAGATAATTAA
86143265 TATTAAGATAATTA
1 TATTAAGATAATTA
86143279 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (15 bp):
TATTAAGATAATTAA
Found at i:86143322 original size:10 final size:10
Alignment explanation
Indices: 86143303--86143334 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
86143293 TTTTAGGATT
86143303 TTAT-TTTAA
1 TTATCTTTAA
86143312 TTATCTTTAA
1 TTATCTTTAA
86143322 TTATCTTTAA
1 TTATCTTTAA
86143332 TTA
1 TTA
86143335 ATTGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:86147034 original size:14 final size:13
Alignment explanation
Indices: 86147010--86147055 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
86147000 CAACCCAATT
86147010 TTTATTTTTATTTCA
1 TTTA-TTTTATTT-A
86147025 TTTATTTTATCTTA
1 TTTATTTTAT-TTA
86147039 -TTATTTTA-TTA
1 TTTATTTTATTTA
86147050 TTTATT
1 TTTATT
86147056 ATTTTCAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
11 3 0.10
12 5 0.17
13 8 0.28
14 7 0.24
15 6 0.21
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:86147044 original size:22 final size:19
Alignment explanation
Indices: 86147009--86147052 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
86146999 GCAACCCAAT
86147009 TTTTATTTTTATTTCATTTA
1 TTTTATTTTTATTTCA-TTA
*
86147029 TTTTATCTTATTATTTTATTA
1 TTTTAT-TT-TTATTTCATTA
86147050 TTT
1 TTT
86147053 ATTATTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 8 0.38
22 7 0.33
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTATTTTTATTTCATTA
Found at i:86147056 original size:15 final size:15
Alignment explanation
Indices: 86147009--86147060 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
86146999 GCAACCCAAT
86147009 TTTTATT-TTTATTTCA
1 TTTTATTATTTA-TT-A
*
86147025 TTTATTTTATCTTATTA
1 TTT-TATTAT-TTATTA
86147042 TTTTATTATTTATTA
1 TTTTATTATTTATTA
86147057 TTTT
1 TTTT
86147061 CAGATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
15 10 0.32
16 8 0.26
17 7 0.23
18 3 0.10
19 3 0.10
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTATTATTTATTA
Found at i:86150277 original size:30 final size:30
Alignment explanation
Indices: 86150243--86150303 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
86150233 TCCTTAACTC
86150243 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
86150273 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
86150303 A
1 A
86150304 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:86152223 original size:27 final size:26
Alignment explanation
Indices: 86152163--86152224 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
86152153 ATAAGACTCT
86152163 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * * *
86152189 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
86152217 ATTTTATT
1 ATTTTATT
86152225 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 14 0.48
28 13 0.45
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:86152247 original size:20 final size:20
Alignment explanation
Indices: 86152219--86152266 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
86152209 ATTTTAGGAT
*
86152219 TTTAT-TTTAATT-ATCTTTA
1 TTTATCTTTAATTAAT-TGTA
86152238 TTTATCTTTAATTAATTGTA
1 TTTATCTTTAATTAATTGTA
86152258 TTTATCTTT
1 TTTATCTTT
86152267 TTAGAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 19 0.73
21 2 0.08
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTATCTTTAATTAATTGTA
Found at i:86156562 original size:54 final size:54
Alignment explanation
Indices: 86156503--86156615 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
86156493 CATGGCTGCT
* *
86156503 AGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACC
1 AGAACAAATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCACC
* * * *
86156557 AGAACAAATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCACC
1 AGAACAAATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACC
86156611 AGAAC
1 AGAAC
86156616 GCTTCCTCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
AGAACAAATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACC
Found at i:86156579 original size:27 final size:26
Alignment explanation
Indices: 86156503--86156615 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
86156493 CATGGCTGCT
* *
86156503 AGAACAGATAATGTGACAGAGTCACC
1 AGAACAGATAATGTGGCAGAGCCACC
86156529 AGATACAGATAATCGTGGCAGAGCCACC
1 AGA-ACAGATAAT-GTGGCAGAGCCACC
*
86156557 AGAACAAATATATGTGGCAGAGCCACC
1 AGAACAGATA-ATGTGGCAGAGCCACC
* * *
86156584 AGATCAGATATTTGTGGCATAGCCACC
1 AGAACAGATA-ATGTGGCAGAGCCACC
86156611 AGAAC
1 AGAAC
86156616 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.04
27 56 0.74
28 17 0.22
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGCCACC
Found at i:86158242 original size:26 final size:26
Alignment explanation
Indices: 86158211--86158318 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
86158201 TGAAATGCCC
86158211 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
86158237 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* *
86158263 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
86158289 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
86158315 ATCA
1 ATCA
86158319 ATTTGCACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 3 0.04
26 71 0.93
27 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:86162396 original size:6 final size:6
Alignment explanation
Indices: 86162385--86162435 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
86162375 TGTGTACCAC
* * *
86162385 TACTGT TACTGT TATTGC TACTGT TACTGT TACTGC TACTGT TACTGT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT
86162433 TAC
1 TAC
86162436 CGATACAATG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:86162407 original size:18 final size:18
Alignment explanation
Indices: 86162384--86162435 Score: 95
Period size: 18 Copynumber: 2.9 Consensus size: 18
86162374 TTGTGTACCA
*
86162384 CTACTGTTACTGTTATTG
1 CTACTGTTACTGTTACTG
86162402 CTACTGTTACTGTTACTG
1 CTACTGTTACTGTTACTG
86162420 CTACTGTTACTGTTAC
1 CTACTGTTACTGTTAC
86162436 CGATACAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.46
Consensus pattern (18 bp):
CTACTGTTACTGTTACTG
Found at i:86162654 original size:18 final size:18
Alignment explanation
Indices: 86162549--86162659 Score: 73
Period size: 18 Copynumber: 6.1 Consensus size: 18
86162539 TAAATAAAGG
* * *
86162549 TACTGAATAACCGACTGT
1 TACTGAATAACTGATTAT
* * *
86162567 TACTGAATAATTTATTGT
1 TACTGAATAACTGATTAT
* * * *
86162585 TACTTAAAAAAATGATCAT
1 TAC-TGAATAACTGATTAT
* *
86162604 TACTGAATAAAC-GACTGT
1 TACTGAAT-AACTGATTAT
86162622 TACTGAATAGA-TGATTAT
1 TACTGAATA-ACTGATTAT
86162640 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
86162658 TA
1 TA
86162660 TTGATGACTG
Statistics
Matches: 70, Mismatches: 18, Indels: 10
0.71 0.18 0.10
Matches are distributed among these distances:
17 2 0.03
18 54 0.77
19 14 0.20
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.36
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:86164803 original size:25 final size:25
Alignment explanation
Indices: 86164775--86164844 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
86164765 CTCTTTTAAT
*
86164775 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
86164800 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
86164825 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
86164845 AGCACTTCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:86165680 original size:27 final size:27
Alignment explanation
Indices: 86165650--86165714 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
86165640 GGGCATATTC
86165650 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
86165677 GTCACTTTACCCTACAGGGGCTTTACT
1 GTCATTTTACCATACAAGGGCTTTACG
*
86165704 GTCTTTTTACC
1 GTCATTTTACC
86165715 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:86165798 original size:27 final size:27
Alignment explanation
Indices: 86165772--86165901 Score: 118
Period size: 27 Copynumber: 4.7 Consensus size: 27
86165762 ATCTACAAAC
*
86165772 CAAGGGTATTTCAATAATTTTGTAAAC
1 CAAGGGTATTTCAATAATTTTGTAAAT
* *
86165799 CAATGGTATTTCTATAATTTT-TAGAAAGT
1 CAAGGGTATTTCAATAATTTTGT--AAA-T
*
86165828 CAAGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTCAATAATTTTGTAAAT
* *** **
86165855 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAATAATTTTGTAAAT
**
86165882 TGAGGGTATTTCAATAATTT
1 CAAGGGTATTTCAATAATTT
86165902 CACAAACCAG
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
26 1 0.01
27 55 0.66
28 6 0.07
29 20 0.24
30 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTCAATAATTTTGTAAAT
Found at i:86165873 original size:56 final size:55
Alignment explanation
Indices: 86165765--86165934 Score: 184
Period size: 54 Copynumber: 3.1 Consensus size: 55
86165755 TTGGTAAATC
* * *
86165765 TACAAACCAAGGGTATTTCAATAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAATAATTTTGTAAACCAGTGGTATTT-TGGTAATTTT
* * * *
86165820 TAGAAAGTCAAGGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCAATAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
** *** *
86165875 TACAAATTGAGGGTATTTCAATAATTTCACAAACCAGTGGTATTTCGGTAA-TTT
1 TACAAATCAAGGGTATTTCAATAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
86165929 TACAAA
1 TACAAA
86165935 CTAGGGGTAT
Statistics
Matches: 96, Mismatches: 17, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
54 45 0.47
55 14 0.15
56 37 0.39
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.39
Consensus pattern (55 bp):
TACAAATCAAGGGTATTTCAATAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
Found at i:86165916 original size:27 final size:27
Alignment explanation
Indices: 86165766--86165973 Score: 85
Period size: 27 Copynumber: 7.6 Consensus size: 27
86165756 TGGTAAATCT
* *
86165766 ACAAACCAAGGGTATTTCAATAATTTT
1 ACAAACCAGGGGTATTTCAATAATTTC
** ** * *
86165793 GTAAACCAATGGTATTTCTATAATTTTT
1 ACAAACCAGGGGTATTTCAATAA-TTTC
* * * * *
86165821 AGAAAGTCAAGGGTATTTCTATAATTTT
1 ACAAA-CCAGGGGTATTTCAATAATTTC
** * *** *
86165849 GTAAATCAGGGGTATTTTGGTAATTTT
1 ACAAACCAGGGGTATTTCAATAATTTC
**
86165876 ACAAA-TTGAGGGTATTTCAATAATTTC
1 ACAAACCAG-GGGTATTTCAATAATTTC
* ** *
86165903 ACAAACCAGTGGTATTTCGGTAATTTT
1 ACAAACCAGGGGTATTTCAATAATTTC
* *** *
86165930 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACCAGGGGTATTTCAATAATTTC
* *
86165957 ACAAACTAAGGGTATTT
1 ACAAACCAGGGGTATTT
86165974 TGGTAATTCT
Statistics
Matches: 145, Mismatches: 32, Indels: 8
0.78 0.17 0.04
Matches are distributed among these distances:
26 1 0.01
27 113 0.78
28 15 0.10
29 16 0.11
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
ACAAACCAGGGGTATTTCAATAATTTC
Found at i:86165917 original size:54 final size:53
Alignment explanation
Indices: 86165774--86165981 Score: 177
Period size: 54 Copynumber: 3.8 Consensus size: 53
86165764 CTACAAACCA
** * * * *
86165774 AGGGTATTTCAATAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTCA
1 AGGGTATTTCAATAATTTTACAAACCAGTGGTATTT-TGGTAA-TTTTACAAA-T-T
* ** * *
86165830 AGGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCAATAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAATT
* * *
86165883 GAGGGTATTTCAATAATTTCACAAACCAGTGGTATTTCGGTAATTTTACAAACT
1 -AGGGTATTTCAATAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAATT
*** *
86165937 AGGGGTATTTTGGTAATTTTACAAACTAAG-GGTATTTTGGTAATT
1 A-GGGTATTTCAATAATTTTACAAAC-CAGTGGTATTTTGGTAATT
86165982 CTATCCTACA
Statistics
Matches: 127, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
53 1 0.01
54 80 0.63
55 11 0.09
56 35 0.28
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCAATAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAATT
Found at i:86165974 original size:27 final size:27
Alignment explanation
Indices: 86165858--86165981 Score: 151
Period size: 27 Copynumber: 4.6 Consensus size: 27
86165848 TGTAAATCAG
* *
86165858 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACTAA
*** * *
86165885 GGGTATTTCAATAATTTCACAAAC-CA
1 GGGTATTTTGGTAATTTTACAAACTAA
* *
86165911 GTGGTATTTCGGTAATTTTACAAACTAG
1 G-GGTATTTTGGTAATTTTACAAACTAA
86165939 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAA
86165966 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
86165982 CTATCCTACA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.02
27 79 0.96
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAA
Found at i:86165996 original size:27 final size:27
Alignment explanation
Indices: 86165856--86166008 Score: 132
Period size: 27 Copynumber: 5.7 Consensus size: 27
86165846 TTTGTAAATC
*
86165856 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTCTACAAACT
* *** *
86165882 TGAGGGTATTTCAATAATT-TCACAAACC
1 AG-GGGTATTTTGGTAATTCT-ACAAACT
* * *
86165910 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTCTACAAACT
*
86165937 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTCTACAAACT
* **
86165964 AAGGGTATTTTGGTAATTCTATCCTAC-
1 AGGGGTATTTTGGTAATTCTA-CAAACT
*
86165991 AGGGGTATTTTAGTAATT
1 AGGGGTATTTTGGTAATT
86166009 TCACAATCGA
Statistics
Matches: 104, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
26 2 0.02
27 97 0.93
28 5 0.05
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTCTACAAACT
Found at i:86166047 original size:27 final size:27
Alignment explanation
Indices: 86166017--86166151 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
86166007 TTTCACAATC
*
86166017 GAGGGTAAAACGATAATTTTGTAAACT
1 GAGGGTAAAACGGTAATTTTGTAAACT
*
86166044 GAGGGTAAAATGGTAATTTTGTAAA-T
1 GAGGGTAAAACGGTAATTTTGTAAACT
*
86166070 CGAGGGTAAAACGGTAATTTTGTAAATT
1 -GAGGGTAAAACGGTAATTTTGTAAACT
* * * *
86166098 GAGGGTAAAATGGTAATTCTATAAATT
1 GAGGGTAAAACGGTAATTTTGTAAACT
*
86166125 GAGGGTAAAACGGTAATTTGGTAAACT
1 GAGGGTAAAACGGTAATTTTGTAAACT
86166152 AAAGTATTCT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 93 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTTTGTAAACT
Found at i:86166088 original size:54 final size:54
Alignment explanation
Indices: 86166013--86166151 Score: 224
Period size: 54 Copynumber: 2.6 Consensus size: 54
86166003 GTAATTTCAC
* * *
86166013 AATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
*
86166067 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
* *
86166121 AATTGAGGGTAAAACGGTAATTTGGTAAACT
1 AATCGAGGGTAAAACGGTAATTTTGTAAACT
86166152 AAAGTATTCT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
Found at i:86168260 original size:21 final size:21
Alignment explanation
Indices: 86168236--86168295 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
86168226 TTACATTGTC
86168236 AACAGAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* *
86168257 AACAGAAGCTCATAAGAGGTG
1 AACAGAAGCTCATAAGAGCTA
86168278 AACAGAAGCTCATAAGAG
1 AACAGAAGCTCATAAGAG
86168296 TTGATCTACC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.47, C:0.17, G:0.23, T:0.13
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:86178787 original size:45 final size:45
Alignment explanation
Indices: 86178721--86178806 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
86178711 TATACACCAA
** *
86178721 AAATGAGTAAGACCATAGTTGAAAGATGCTATGTCATCATGATGG
1 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGATGG
* *
86178766 AAATGTGTAAGACCATGGTTGAAAGACACTATGGCATCATG
1 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
86178807 GTAAACAAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGATGG
Found at i:86179002 original size:27 final size:27
Alignment explanation
Indices: 86178972--86179029 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
86178962 ACATCATACA
86178972 TAGTCTGCCGGGACATTAAACA-AGGAG
1 TAGTCTGCCGGGACATTAAACATAGG-G
* *
86178999 TAGTCTGTCGGGATATTAAACATAGGG
1 TAGTCTGCCGGGACATTAAACATAGGG
86179026 TAGT
1 TAGT
86179030 TTGCTAGGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (27 bp):
TAGTCTGCCGGGACATTAAACATAGGG
Found at i:86179919 original size:3 final size:3
Alignment explanation
Indices: 86179911--86179943 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
86179901 TAATCTAGAA
86179911 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
86179944 TTGTGCGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:86180952 original size:21 final size:21
Alignment explanation
Indices: 86180846--86180939 Score: 107
Period size: 21 Copynumber: 4.5 Consensus size: 21
86180836 GAGAAGCAGT
** *
86180846 ATACGACACATAAAGTGCCTG
1 ATACGACACACGAGGTGCCTG
* * *
86180867 TTACGACACACGAGGTTCTTG
1 ATACGACACACGAGGTGCCTG
*
86180888 ATACGACACACGAGGTTCCTG
1 ATACGACACACGAGGTGCCTG
* *
86180909 TTACGACACACGAGGTACCTG
1 ATACGACACACGAGGTGCCTG
86180930 ATACGACACA
1 ATACGACACA
86180940 TAAAGTGCCT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:86181439 original size:17 final size:18
Alignment explanation
Indices: 86181405--86181440 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
86181395 TGAATTTCCA
86181405 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
86181423 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
86181440 T
1 T
86181441 AACTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:86182136 original size:30 final size:28
Alignment explanation
Indices: 86182081--86182142 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 28
86182071 ATTATTTAAT
86182081 TAATAAATATCTTTTACTTAATAATAAA
1 TAATAAATATCTTTTACTTAATAATAAA
*
86182109 TAATAAATATCTATTTACTTAAATAATAAG
1 TAATAAATATCT-TTTACTT-AATAATAAA
86182139 TAAT
1 TAAT
86182143 TTAAATAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.39
29 7 0.23
30 12 0.39
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (28 bp):
TAATAAATATCTTTTACTTAATAATAAA
Found at i:86182659 original size:20 final size:20
Alignment explanation
Indices: 86182623--86182662 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
86182613 AAAAAGAAAC
**
86182623 ATAACTATTCATTTAATATT
1 ATAACTATTCAACTAATATT
86182643 ATAACTATTCAACTAATATT
1 ATAACTATTCAACTAATATT
86182663 GTTTGAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAACTATTCAACTAATATT
Found at i:86186116 original size:5 final size:6
Alignment explanation
Indices: 86186101--86186133 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
86186091 AAAGGAATGT
86186101 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
86186134 GAAGGGAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:86187032 original size:22 final size:22
Alignment explanation
Indices: 86187004--86187049 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
86186994 ATTAAAAGTC
86187004 TAAACACTTGAATGGTCAGTTT
1 TAAACACTTGAATGGTCAGTTT
86187026 TAAACACTTGAATGGTCAGTTT
1 TAAACACTTGAATGGTCAGTTT
86187048 TA
1 TA
86187050 CCATTGTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (22 bp):
TAAACACTTGAATGGTCAGTTT
Found at i:86193276 original size:41 final size:41
Alignment explanation
Indices: 86193231--86193312 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
86193221 CTATTCAAAA
*
86193231 GTTTTCATTTAAGTCGCTAAACTATTTGAAAGCTTTTATTT
1 GTTTTCATTGAAGTCGCTAAACTATTTGAAAGCTTTTATTT
86193272 GTTTTCATTGAAGTCGCTAAACTATTTGAAAGCTTTTATTT
1 GTTTTCATTGAAGTCGCTAAACTATTTGAAAGCTTTTATTT
86193313 AAGTCACTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.48
Consensus pattern (41 bp):
GTTTTCATTGAAGTCGCTAAACTATTTGAAAGCTTTTATTT
Found at i:86195722 original size:29 final size:29
Alignment explanation
Indices: 86195673--86195728 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
86195663 ATAGGGACTT
86195673 GATCAAATTAGTCTCTCTACTATTAAATA
1 GATCAAATTAGTCTCTCTACTATTAAATA
* *
86195702 GATCAATTTAGTC-CTTGTACTATTAAA
1 GATCAAATTAGTCTC-TCTACTATTAAA
86195729 AGAAAATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 23 0.96
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (29 bp):
GATCAAATTAGTCTCTCTACTATTAAATA
Found at i:86201447 original size:25 final size:25
Alignment explanation
Indices: 86201397--86201457 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
86201387 TATCCATGAT
* * *
86201397 ATAAATATAAAAATTTTCTATTAAA
1 ATAAAAATAAAAATTTTCAATCAAA
86201422 ATAAAAATAAAAATTTAT-AATCAAA
1 ATAAAAATAAAAATTT-TCAATCAAA
86201447 ACT-AAAATAAA
1 A-TAAAAATAAA
86201458 TAATAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 29 0.94
26 2 0.06
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (25 bp):
ATAAAAATAAAAATTTTCAATCAAA
Found at i:86207053 original size:17 final size:17
Alignment explanation
Indices: 86207028--86207061 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86207018 AAAATGCCAC
* *
86207028 TGTATCTCAATTTTTTG
1 TGTAGCTCAAATTTTTG
86207045 TGTAGCTCAAATTTTTG
1 TGTAGCTCAAATTTTTG
86207062 CGGCGTTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.15, T:0.53
Consensus pattern (17 bp):
TGTAGCTCAAATTTTTG
Found at i:86207143 original size:27 final size:24
Alignment explanation
Indices: 86207094--86207155 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 24
86207084 ACTATTGCTC
86207094 AATTTTATTTTATTTTGTCATTTTTA
1 AATTTT-TTTTATTTTGTCA-TTTTA
* *
86207120 ACATATTTTTTTATTTTTTTATTTTA
1 A-AT-TTTTTTTATTTTGTCATTTTA
86207146 AATTTTTTTT
1 AATTTTTTTT
86207156 GCTGAGATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 7 0.22
25 2 0.06
26 7 0.22
27 13 0.41
28 3 0.09
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.73
Consensus pattern (24 bp):
AATTTTTTTTATTTTGTCATTTTA
Found at i:86207261 original size:7 final size:7
Alignment explanation
Indices: 86207251--86207320 Score: 61
Period size: 7 Copynumber: 9.6 Consensus size: 7
86207241 AATATTAAAA
86207251 TTTTAAGT
1 TTTTAA-T
86207259 TTTTAAGT
1 TTTTAA-T
86207267 TTTTAA-
1 TTTTAAT
86207273 TTTTAATT
1 TTTTAA-T
*
86207281 TTTTTAT
1 TTTTAAT
86207288 TTTTCAAT
1 TTTT-AAT
*
86207296 TTTCAAT
1 TTTTAAT
*
86207303 TTTCAAT
1 TTTTAAT
*
86207310 TTTCAAT
1 TTTTAAT
86207317 TTTT
1 TTTT
86207321 TTAAAGATTT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
6 6 0.11
7 25 0.45
8 24 0.44
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.67
Consensus pattern (7 bp):
TTTTAAT
Found at i:86207284 original size:15 final size:16
Alignment explanation
Indices: 86207266--86207324 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 16
86207256 AGTTTTTAAG
86207266 TTTTTAATTTT-AATT
1 TTTTTAATTTTCAATT
*
86207281 TTTTTATTTTTCAATTT
1 TTTTTAATTTTCAA-TT
86207298 TCAATTTTCAATTTTCAATT
1 T---TTTT-AATTTTCAATT
86207318 TTTTTAA
1 TTTTTAA
86207325 AGATTTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
15 10 0.28
16 4 0.11
17 7 0.19
20 7 0.19
21 8 0.22
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTTAATTTTCAATT
Found at i:86207973 original size:6 final size:6
Alignment explanation
Indices: 86207964--86207994 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
86207954 TTTCAAAACC
*
86207964 AAAGGG AAAGGG AAAGGG AAAGGG GAAGGG A
1 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG A
86207995 TCATATGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (6 bp):
AAAGGG
Found at i:86208211 original size:20 final size:21
Alignment explanation
Indices: 86208188--86208226 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
86208178 TTATATTTCA
86208188 TTTTTATTTA-TTATCAATGT
1 TTTTTATTTATTTATCAATGT
86208208 TTTTTATTTATTTATCAAT
1 TTTTTATTTATTTATCAAT
86208227 ATATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (21 bp):
TTTTTATTTATTTATCAATGT
Found at i:86208233 original size:21 final size:20
Alignment explanation
Indices: 86208189--86208233 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
86208179 TATATTTCAT
* *
86208189 TTTTATTTATTATCAATGTT
1 TTTTATTTATTATCAATATA
86208209 TTTTATTTATTTATCAATATA
1 TTTTATTTA-TTATCAATATA
86208230 TTTT
1 TTTT
86208234 TTAAATCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTATTTATTATCAATATA
Found at i:86209156 original size:81 final size:81
Alignment explanation
Indices: 86208988--86209243 Score: 422
Period size: 81 Copynumber: 3.1 Consensus size: 81
86208978 CGTTTTTGGT
* * *
86208988 AAAACGCCGCTATTGCTTTGTTTTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGTTTT
1 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAATGCCGCTATTGCTCT-ATTT
* *
86209053 TTAGCGGTGCTTTGACA
65 TTAGCGGAGCTTTGCCA
*
86209070 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAATACCGCTATTGCTCTATTTT
1 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAATGCCGCTATTGCTCTATTTT
86209135 TAGCGGAGCTTTGCCA
66 TAGCGGAGCTTTGCCA
*
86209151 AAAACGCCGCTATTGCTCTATTTTTTAGCGGCGCTTTGCCAAAAATGCCGCTATTGCTCTATTTT
1 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAATGCCGCTATTGCTCTATTTT
* *
86209216 TAGCGGCGTTTTGCCA
66 TAGCGGAGCTTTGCCA
86209232 AAAACGCCGCTA
1 AAAACGCCGCTA
86209244 ATGTATAATT
Statistics
Matches: 164, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
81 107 0.65
82 57 0.35
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (81 bp):
AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAATGCCGCTATTGCTCTATTTT
TAGCGGAGCTTTGCCA
Found at i:86209187 original size:122 final size:122
Alignment explanation
Indices: 86208994--86209235 Score: 387
Period size: 122 Copynumber: 2.0 Consensus size: 122
86208984 TGGTAAAACG
* * * *
86208994 CCGCTATTGCTTTGTTTTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGTTTTTTAGCG
1 CCGCTATTGCTCTGATTTTTAGCGGAGCTTTGCCAAAAACGCCGCTATTGCTCTATTTTTTAGCG
* *
86209059 GTGCTTTGACAAAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAATA
66 GCGCTTTGACAAAAACGCCGCTATTGCTCT-ATTTTTAGCGGCGCTTTGCCAAAAATA
86209117 CCGCTATTGCTCT-ATTTTTAGCGGAGCTTTGCCAAAAACGCCGCTATTGCTCTATTTTTTAGCG
1 CCGCTATTGCTCTGATTTTTAGCGGAGCTTTGCCAAAAACGCCGCTATTGCTCTATTTTTTAGCG
* * *
86209181 GCGCTTTGCCAAAAATGCCGCTATTGCTCTATTTTTAGCGGCGTTTTGCCAAAAA
66 GCGCTTTGACAAAAACGCCGCTATTGCTCTATTTTTAGCGGCGCTTTGCCAAAAA
86209236 CGCCGCTAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
121 23 0.21
122 75 0.68
123 12 0.11
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (122 bp):
CCGCTATTGCTCTGATTTTTAGCGGAGCTTTGCCAAAAACGCCGCTATTGCTCTATTTTTTAGCG
GCGCTTTGACAAAAACGCCGCTATTGCTCTATTTTTAGCGGCGCTTTGCCAAAAATA
Done.