Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 26 of 311
Found at i:7346131 original size:6 final size:6
Alignment explanation
Indices: 7346120--7346151 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
7346110 GAAAAACCAA
7346120 AGGCAC AGGCAC AGGCAC AGGCAC AGGCAC AG
1 AGGCAC AGGCAC AGGCAC AGGCAC AGGCAC AG
7346152 CTTCCTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.34, T:0.00
Consensus pattern (6 bp):
AGGCAC
Found at i:7348908 original size:22 final size:22
Alignment explanation
Indices: 7348880--7348927 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
7348870 TAATTTTAAA
7348880 TTTTGAATATTATTTAATATTT
1 TTTTGAATATTATTTAATATTT
7348902 TTTTGAATATTATTTAATATTT
1 TTTTGAATATTATTTAATATTT
7348924 TTTT
1 TTTT
7348928 CATTTATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTTGAATATTATTTAATATTT
Found at i:7356679 original size:26 final size:26
Alignment explanation
Indices: 7356650--7356726 Score: 64
Period size: 28 Copynumber: 2.8 Consensus size: 26
7356640 GCCCTTTGAA
* * *
7356650 TCATTTGATATTTTGCACACTAAGTG
1 TCATTTAATATCTCGCACACTAAGTG
7356676 TCATTCTTAATATCTCGCACACTAAGTG
1 TCA-T-TTAATATCTCGCACACTAAGTG
* * *
7356704 CCATTCTCAATATTTCGTACACT
1 TCATT-T-AATATCTCGCACACT
7356727 GAGTACCATA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
26 4 0.10
27 3 0.07
28 34 0.83
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.39
Consensus pattern (26 bp):
TCATTTAATATCTCGCACACTAAGTG
Found at i:7356695 original size:28 final size:28
Alignment explanation
Indices: 7356664--7356735 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
7356654 TTGATATTTT
* *
7356664 GCACACTAAGTGTCATTCTTAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
7356692 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
7356720 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
7356736 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:7359828 original size:43 final size:43
Alignment explanation
Indices: 7359705--7359828 Score: 158
Period size: 43 Copynumber: 2.9 Consensus size: 43
7359695 TATCGATATG
* * * *
7359705 TGATTACATGTAAGACCATGTCTAGGAAATTGGCATTGTATTG
1 TGATTACGTGTAAGACCATGTCTGGGAAATTGGCATCGTATTA
* *
7359748 TGATTACGTGTAAGACCATGTCTGGGACATTGACATCGTATTA
1 TGATTACGTGTAAGACCATGTCTGGGAAATTGGCATCGTATTA
* * * *
7359791 TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCG
1 TGATTACGTGTAAGACCATGTCTGGGAAATTGGCATCG
7359829 ACATGTGATA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGAAATTGGCATCGTATTA
Found at i:7366205 original size:127 final size:126
Alignment explanation
Indices: 7365979--7366375 Score: 482
Period size: 127 Copynumber: 3.2 Consensus size: 126
7365969 GGCCAAACAT
* * * * *
7365979 GAACTACCGTAGAAAAAAAGCATCCACGTGGGAGCTTTTTTC-ATAAATTTTGCTGACAGTGCAC
1 GAACTACTGTAGAAAAAAA-CGTCCACATGGGAGCTTTTTTCAAT-AATTTTGCTGACAATGCAT
* * * * *
7366043 CCTACTTCAAGCATTTTTGACACCATTTATTCAGAACTGTCTTCTCAAAATTATTTTTTTTAG
64 CCTGCTTAAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTTTAG
* * *
7366106 GAACTACTGTAGAAAAATAACGTCCACTTAGGAGCTTTTTTCAATATTTTTGCTGACAATGCATC
1 GAACTACTGTAGAAAAA-AACGTCCACATGGGAGCTTTTTTCAATAATTTTGCTGACAATGCATC
** *
7366171 CTGCTTAAAGTGTTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATTA-TTTTTTTAG
65 CTGCTTAAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTTTAG
* * * *
7366232 GAATTACTGTAGAAGAAGAGCGTCCACATGGGAG-TTTTTTCAGTAATTTTGCTGACAATGCATC
1 GAACTACTGTAGAA-AAAAACGTCCACATGGGAGCTTTTTTCAATAATTTTGCTGACAATGCATC
* * *
7366296 ATGC-TAGAAGCATTTTTGACATTATCTTGTT-AGAACCGTCTTCTCAAAATTATTTTTTCT-G
65 CTGCTTA-AAGCATTTTTGACACTAT-TTGTTCAGAACCGTCTTCTCAAAATTATTTTTTTTAG
*
7366357 AAACTACTGTAGAAAAAAA
1 GAACTACTGTAGAAAAAAA
7366376 AAGCAAAATC
Statistics
Matches: 232, Mismatches: 32, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
124 5 0.02
125 79 0.34
126 46 0.20
127 98 0.42
128 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAAACGTCCACATGGGAGCTTTTTTCAATAATTTTGCTGACAATGCATCC
TGCTTAAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTTTAG
Found at i:7366495 original size:34 final size:35
Alignment explanation
Indices: 7366454--7366545 Score: 118
Period size: 34 Copynumber: 2.7 Consensus size: 35
7366444 TTTAAAAAAA
* *
7366454 CTAAACCCTAATTTAATTAATTTTCTTTAAAA-CT
1 CTAAACCCTAATTTAATTAATTTTATTTAAAACCC
*
7366488 TTAAACCCTAATTTAACTT-A-TTTATTTAAAACCC
1 CTAAACCCTAATTTAA-TTAATTTTATTTAAAACCC
*
7366522 CTAAAACCTAATTTAATTAATTTT
1 CTAAACCCTAATTTAATTAATTTT
7366546 TTAAAAAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
33 12 0.24
34 32 0.65
35 5 0.10
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.43
Consensus pattern (35 bp):
CTAAACCCTAATTTAATTAATTTTATTTAAAACCC
Found at i:7366632 original size:34 final size:33
Alignment explanation
Indices: 7366587--7366687 Score: 150
Period size: 34 Copynumber: 3.0 Consensus size: 33
7366577 TTAAAATTCT
7366587 ACCCTACACCTAAATTATTTTAACAAAACTTTAA
1 ACCCTA-ACCTAAATTATTTTAACAAAACTTTAA
**
7366621 ACCCTGAACCTAAATTATTTTAACAAAACCCT-A
1 ACCCT-AACCTAAATTATTTTAACAAAACTTTAA
7366654 ACCCTAACCCTAAATTATTTTAACAAAACTTTAA
1 ACCCTAA-CCTAAATTATTTTAACAAAACTTTAA
7366688 CCTTAAACCT
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
32 2 0.03
33 28 0.47
34 29 0.48
35 1 0.02
ACGTcount: A:0.44, C:0.25, G:0.01, T:0.31
Consensus pattern (33 bp):
ACCCTAACCTAAATTATTTTAACAAAACTTTAA
Found at i:7366689 original size:33 final size:33
Alignment explanation
Indices: 7366587--7366689 Score: 147
Period size: 33 Copynumber: 3.1 Consensus size: 33
7366577 TTAAAATTCT
7366587 ACCCT-ACACCTAAATTATTTTAACAAAACTTTAA
1 ACCCTAAC-CCTAAATTATTTTAACAAAACTTT-A
**
7366621 ACCCTGAA-CCTAAATTATTTTAACAAAACCCTA
1 ACCCT-AACCCTAAATTATTTTAACAAAACTTTA
7366654 ACCCTAACCCTAAATTATTTTAACAAAACTTTA
1 ACCCTAACCCTAAATTATTTTAACAAAACTTTA
7366687 ACC
1 ACC
7366690 TTAAACCTTG
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
32 2 0.03
33 32 0.52
34 27 0.44
36 1 0.02
ACGTcount: A:0.43, C:0.26, G:0.01, T:0.30
Consensus pattern (33 bp):
ACCCTAACCCTAAATTATTTTAACAAAACTTTA
Found at i:7370993 original size:22 final size:22
Alignment explanation
Indices: 7370950--7370994 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7370940 CACATTTGGG
* *
7370950 AAAATCTTATAATATTTTTAAA
1 AAAATCTTATAATAATTCTAAA
7370972 AAAATCTCTATAA-AATTCTAAA
1 AAAATCT-TATAATAATTCTAAA
7370994 A
1 A
7370995 CTTTAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAATCTTATAATAATTCTAAA
Found at i:7374056 original size:9 final size:9
Alignment explanation
Indices: 7374042--7374071 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7374032 TATACATAGT
7374042 TTTTATTTC
1 TTTTATTTC
7374051 TTTTATTTC
1 TTTTATTTC
*
7374060 TTTTTTTTC
1 TTTTATTTC
7374069 TTT
1 TTT
7374072 AAGAACAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTATTTC
Found at i:7376781 original size:230 final size:230
Alignment explanation
Indices: 7376378--7376841 Score: 820
Period size: 230 Copynumber: 2.0 Consensus size: 230
7376368 GTCAACTGCT
* *
7376378 ACTAAGATGTATTTATTCCCAAATGAACTGGGGAATGGGCCCATGAAATCGATACCCCAGACGTC
1 ACTAAGATGTATTTATTCCCAAATGAACTGGGGAATAGGCCCATGAAATCGATACCCCAAACGTC
* *
7376443 AAATATTTCACATGAAATCATATAGTTTTGAGGCATTTCATCACGTTTAGATATGTTACCTGTCC
66 AAATATTTCACATGAAAGCATATAGTTTTGAGGCATTTCATCACGTTTAGATATGTTACCTATCC
* *
7376508 GTTGGCATTTGTCACATAAAGTAACACACCTGATAGCGTCTTTGAATAACGAAGGCCAATAAGAA
131 GTTGGCATTTGTCACATAAAGTAACACACCTGATAGCGTCTTTGAATAACGAAGGCCAAAAAAAA
*
7376573 CCTGATTCAAGTACTTTGTGTGTGGTCTTAGTTCC
196 CCTGATTCAAGTACTTTGTGTGCGGTCTTAGTTCC
*
7376608 ACTAAGATGTATTTATTCCCAAATGAACTGGGGAATAGGCCTATGAAATCGATACCCCAAACGTC
1 ACTAAGATGTATTTATTCCCAAATGAACTGGGGAATAGGCCCATGAAATCGATACCCCAAACGTC
7376673 AAATATTTCACATGAAAGCATATAGTTTTGAGGCATTTCATCACGTTTAGATATGTTACCTATCC
66 AAATATTTCACATGAAAGCATATAGTTTTGAGGCATTTCATCACGTTTAGATATGTTACCTATCC
* * *
7376738 GTTGGCATTTGTCACATGAAGTAATATACCTGATAGCGTCTTTGAATAACGAAGGCCAAAAAAAA
131 GTTGGCATTTGTCACATAAAGTAACACACCTGATAGCGTCTTTGAATAACGAAGGCCAAAAAAAA
*
7376803 CCTGATTCAAGTATTTTGTGTGCGGTCTTAGTTCC
196 CCTGATTCAAGTACTTTGTGTGCGGTCTTAGTTCC
7376838 ACTA
1 ACTA
7376842 TAGTGTCCTC
Statistics
Matches: 222, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
230 222 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (230 bp):
ACTAAGATGTATTTATTCCCAAATGAACTGGGGAATAGGCCCATGAAATCGATACCCCAAACGTC
AAATATTTCACATGAAAGCATATAGTTTTGAGGCATTTCATCACGTTTAGATATGTTACCTATCC
GTTGGCATTTGTCACATAAAGTAACACACCTGATAGCGTCTTTGAATAACGAAGGCCAAAAAAAA
CCTGATTCAAGTACTTTGTGTGCGGTCTTAGTTCC
Found at i:7386824 original size:24 final size:24
Alignment explanation
Indices: 7386790--7386841 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7386780 TTTCTAGAAG
* *
7386790 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
* *
7386814 ATTTAGCATTTGTTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
7386838 ATTT
1 ATTT
7386842 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:7388553 original size:24 final size:19
Alignment explanation
Indices: 7388504--7388548 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
7388494 CAATCAAATT
7388504 ATAAAATTTAATATTTTTA
1 ATAAAATTTAATATTTTTA
7388523 ATAAAATTTAATATTTTTA
1 ATAAAATTTAATATTTTTA
*
7388542 ATTAAAT
1 ATAAAAT
7388549 AAAATATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATAAAATTTAATATTTTTA
Found at i:7388573 original size:19 final size:19
Alignment explanation
Indices: 7388507--7388573 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
7388497 TCAAATTATA
*
7388507 AAATTTAATATTTTTAATA
1 AAATTTAATATTTTTAATT
7388526 AAATTTAATATTTTTAATT
1 AAATTTAATATTTTTAATT
** **
7388545 AAATAAAATATTTAAAATT
1 AAATTTAATATTTTTAATT
*
7388564 AAGTTTAATA
1 AAATTTAATA
7388574 AAATTTAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (19 bp):
AAATTTAATATTTTTAATT
Found at i:7389786 original size:8 final size:8
Alignment explanation
Indices: 7389773--7389801 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7389763 TTTGGATATA
7389773 TATATAGT
1 TATATAGT
7389781 TATATAGT
1 TATATAGT
7389789 TATATAGT
1 TATATAGT
7389797 TATAT
1 TATAT
7389802 GGTACATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (8 bp):
TATATAGT
Found at i:7392489 original size:2 final size:2
Alignment explanation
Indices: 7392482--7392509 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7392472 ACTCCACTAA
7392482 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7392510 AGGAGGGAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7393882 original size:29 final size:29
Alignment explanation
Indices: 7393849--7393936 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 29
7393839 AATGTATTTC
7393849 AATATTTTCAATAAATTTTATTATTAACA
1 AATATTTTCAATAAATTTTATTATTAACA
* *
7393878 AATA-TTTGAATTAAA---TA-T-TTAA-T
1 AATATTTTCAA-TAAATTTTATTATTAACA
*
7393901 AATATTTTCAA-CAATCTTTATTATTAACA
1 AATATTTTCAATAAAT-TTTATTATTAACA
7393930 AATATTT
1 AATATTT
7393937 GAATTAATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 18
0.66 0.07 0.26
Matches are distributed among these distances:
22 2 0.04
23 4 0.09
24 9 0.20
25 1 0.02
26 4 0.09
27 1 0.02
28 9 0.20
29 15 0.33
ACGTcount: A:0.44, C:0.07, G:0.01, T:0.48
Consensus pattern (29 bp):
AATATTTTCAATAAATTTTATTATTAACA
Found at i:7394368 original size:19 final size:19
Alignment explanation
Indices: 7394344--7394412 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
7394334 ATTATATTTT
7394344 ATCATAAAAATTGTTAAAA
1 ATCATAAAAATTGTTAAAA
* *
7394363 ATCATAAAAAATATTAAAA
1 ATCATAAAAATTGTTAAAA
* *
7394382 TTGATAAAAATTCG-TAAAA
1 ATCATAAAAATT-GTTAAAA
* *
7394401 CTTATAAAAATT
1 ATCATAAAAATT
7394413 ATAAAATTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (19 bp):
ATCATAAAAATTGTTAAAA
Found at i:7394391 original size:10 final size:9
Alignment explanation
Indices: 7394347--7394423 Score: 64
Period size: 9 Copynumber: 8.2 Consensus size: 9
7394337 ATATTTTATC
7394347 ATAAAAATT
1 ATAAAAATT
* *
7394356 GTTAAAAATC
1 -ATAAAAATT
*
7394366 ATAAAAAAT
1 ATAAAAATT
*
7394375 ATTAAAATT
1 ATAAAAATT
7394384 GATAAAAATT
1 -ATAAAAATT
* *
7394394 CGTAAAACTT
1 -ATAAAAATT
7394404 ATAAAAATT
1 ATAAAAATT
*
7394413 ATAAAATTT
1 ATAAAAATT
7394422 AT
1 AT
7394424 TATAAAGTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 3
0.75 0.20 0.04
Matches are distributed among these distances:
9 30 0.58
10 22 0.42
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:7395430 original size:22 final size:19
Alignment explanation
Indices: 7395392--7395437 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
7395382 TTTATACTTT
*
7395392 TTTTTTATGTATCTTATAA
1 TTTTTTATGAATCTTATAA
7395411 CTTTTTTATGAATCTTTTATAA
1 -TTTTTTATGAATC--TTATAA
7395433 TTTTT
1 TTTTT
7395438 AAAAGTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 12 0.52
21 5 0.22
22 6 0.26
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.65
Consensus pattern (19 bp):
TTTTTTATGAATCTTATAA
Found at i:7395475 original size:16 final size:17
Alignment explanation
Indices: 7395454--7395485 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7395444 TTATAGAAAG
7395454 TTTTTAATAT-TTTTTA
1 TTTTTAATATATTTTTA
7395470 TTTTTAATATATTTTT
1 TTTTTAATATATTTTT
7395486 TAAGTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTAATATATTTTTA
Found at i:7395494 original size:36 final size:36
Alignment explanation
Indices: 7395451--7395523 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 36
7395441 AGTTTATAGA
*
7395451 AAGTTTTTAAT-ATTTTTTATTTTTAATATA-TTTTTT
1 AAGTTTTT-ATGATTTTTAATTTTT-ATATAGTTTTTT
*
7395487 AAGTTTTTATGATTTTTAATTTTTTTATAGTTTTTT
1 AAGTTTTTATGATTTTTAATTTTTATATAGTTTTTT
7395523 A
1 A
7395524 TGAGAAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 6 0.18
36 27 0.82
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (36 bp):
AAGTTTTTATGATTTTTAATTTTTATATAGTTTTTT
Found at i:7395501 original size:18 final size:18
Alignment explanation
Indices: 7395451--7395523 Score: 64
Period size: 17 Copynumber: 4.1 Consensus size: 18
7395441 AGTTTATAGA
7395451 AAGTTTTTAATATTTTTT
1 AAGTTTTTAATATTTTTT
7395469 -A-TTTTTAATATATTTTTT
1 AAGTTTTT-A-ATATTTTTT
7395487 AAGTTTTT-ATGA-TTTTT
1 AAGTTTTTAAT-ATTTTTT
* *
7395504 AATTTTTTTATAGTTTTTT
1 AAGTTTTTAATA-TTTTTT
7395523 A
1 A
7395524 TGAGAAATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 15
0.74 0.02 0.24
Matches are distributed among these distances:
16 5 0.11
17 17 0.37
18 12 0.26
19 7 0.15
20 5 0.11
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
AAGTTTTTAATATTTTTT
Found at i:7395512 original size:28 final size:29
Alignment explanation
Indices: 7395469--7395526 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
7395459 AATATTTTTT
*
7395469 ATTTTTAATATATTTTTTAAG-TTTTTATG
1 ATTTTTAATATATTTTAT-AGTTTTTTATG
*
7395498 ATTTTTAAT-TTTTTTATAGTTTTTTATG
1 ATTTTTAATATATTTTATAGTTTTTTATG
7395526 A
1 A
7395527 GAAATAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 2 0.08
28 15 0.58
29 9 0.35
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (29 bp):
ATTTTTAATATATTTTATAGTTTTTTATG
Found at i:7404511 original size:19 final size:19
Alignment explanation
Indices: 7404475--7404511 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7404465 GGCAAAAATT
* *
7404475 AAATACTATTTAATTAATA
1 AAATACTATTAAAATAATA
7404494 AAATACTATTAAAATAAT
1 AAATACTATTAAAATAAT
7404512 TATTAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATACTATTAAAATAATA
Found at i:7414235 original size:16 final size:16
Alignment explanation
Indices: 7414211--7414249 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
7414201 TTTCATTAAG
*
7414211 AAAACCAGTTAAACCA
1 AAAATCAGTTAAACCA
7414227 AAAATCAGTTAAACCA
1 AAAATCAGTTAAACCA
7414243 AAAATCA
1 AAAATCA
7414250 TGCTAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.59, C:0.21, G:0.05, T:0.15
Consensus pattern (16 bp):
AAAATCAGTTAAACCA
Found at i:7414256 original size:17 final size:16
Alignment explanation
Indices: 7414220--7414256 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
7414210 GAAAACCAGT
*
7414220 TAAACCAAAAATCAGT
1 TAAACCAAAAATCAGC
7414236 TAAACCAAAAATCATGC
1 TAAACCAAAAATCA-GC
7414253 TAAA
1 TAAA
7414257 AAAATCAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.57, C:0.19, G:0.05, T:0.19
Consensus pattern (16 bp):
TAAACCAAAAATCAGC
Found at i:7417700 original size:16 final size:16
Alignment explanation
Indices: 7417676--7417711 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
7417666 CGTACTGAGC
*
7417676 GAGAGAGGAGAACCGG
1 GAGAAAGGAGAACCGG
7417692 GAGAAAGGAGAACCGG
1 GAGAAAGGAGAACCGG
7417708 GAGA
1 GAGA
7417712 GAGGTCGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.47, T:0.00
Consensus pattern (16 bp):
GAGAAAGGAGAACCGG
Found at i:7419744 original size:46 final size:46
Alignment explanation
Indices: 7419376--7419744 Score: 562
Period size: 46 Copynumber: 8.0 Consensus size: 46
7419366 TTTCTGTCAT
** **
7419376 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCC-CGTCATG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTA--CACATTCCATATCA-G
* * *
7419424 G-TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
** * *
7419469 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
*
7419515 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
*
7419561 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
* *
7419607 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCTATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
7419653 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
7419699 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
7419745 ATAGCACACT
Statistics
Matches: 303, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
45 6 0.02
46 267 0.88
47 29 0.10
48 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.37
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAG
Found at i:7425710 original size:22 final size:22
Alignment explanation
Indices: 7425682--7425723 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7425672 GAGGTAGGAA
7425682 TCTGCATCTGTATCTGATATGT
1 TCTGCATCTGTATCTGATATGT
*
7425704 TCTGCATCTGTATTTGATAT
1 TCTGCATCTGTATCTGATAT
7425724 TCTCTATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.48
Consensus pattern (22 bp):
TCTGCATCTGTATCTGATATGT
Found at i:7427373 original size:46 final size:46
Alignment explanation
Indices: 7427319--7427433 Score: 137
Period size: 46 Copynumber: 2.5 Consensus size: 46
7427309 CGAGCTTTTA
*
7427319 CATATGTTGTGGACTTGAGAATACAAGTATAGGTTCTGAGCT-CTAG
1 CATATGTTGTGGACTTGAGAATACAAGTATAGGTTCCGAGCTCCT-G
* * * *
7427365 CA-AGTGTTGCGGACTCGAGAATACAGGTTTAGGTTCCGAGCTCCTG
1 CATA-TGTTGTGGACTTGAGAATACAAGTATAGGTTCCGAGCTCCTG
7427411 CATATGTTGCT-GACTTGAGAATA
1 CATATGTTG-TGGACTTGAGAATA
7427434 TAGGAATATT
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
45 1 0.02
46 54 0.93
47 3 0.05
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (46 bp):
CATATGTTGTGGACTTGAGAATACAAGTATAGGTTCCGAGCTCCTG
Found at i:7430069 original size:46 final size:46
Alignment explanation
Indices: 7430019--7430194 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 46
7430009 TGGTTGAGCA
7430019 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
7430065 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
*
7430110 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7430158 -CCTGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7430195 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 24
0.77 0.06 0.17
Matches are distributed among these distances:
42 6 0.05
43 5 0.05
45 4 0.04
46 57 0.52
47 26 0.24
48 2 0.02
50 4 0.04
51 6 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7430175 original size:93 final size:93
Alignment explanation
Indices: 7430016--7430185 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
7430006 GGATGGTTGA
* *
7430016 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
7430081 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
*
7430109 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGAG
7430173 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
7430186 CGCTTATGGG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:7440247 original size:3 final size:3
Alignment explanation
Indices: 7440233--7440266 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
7440223 AAATTAAGAT
*
7440233 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7440267 AGAAACAGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7441194 original size:3 final size:3
Alignment explanation
Indices: 7441181--7441229 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
7441171 TGAACTCCTC
*
7441181 TGA TTA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
7441229 T
1 T
7441230 TCTGGTGATG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.37
Consensus pattern (3 bp):
TGA
Found at i:7442384 original size:25 final size:25
Alignment explanation
Indices: 7442336--7442384 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
7442326 AATCGGAAGT
* * *
7442336 TTTTTTTTTAAGGTTAGGGTTTTGA
1 TTTTTTTTAAAGGTTAAGGATTTGA
7442361 TTTTTTTTAAAGGTTAAGGATTTG
1 TTTTTTTTAAAGGTTAAGGATTTG
7442385 TGAATTTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.22, T:0.57
Consensus pattern (25 bp):
TTTTTTTTAAAGGTTAAGGATTTGA
Found at i:7443872 original size:13 final size:15
Alignment explanation
Indices: 7443850--7443882 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
7443840 TATTTTAATT
7443850 TTTTCTTTTTGT-TA
1 TTTTCTTTTTGTATA
7443864 TTTTC-TTTTGTATA
1 TTTTCTTTTTGTATA
7443878 TTTTC
1 TTTTC
7443883 ATTCTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.76
Consensus pattern (15 bp):
TTTTCTTTTTGTATA
Found at i:7444917 original size:125 final size:125
Alignment explanation
Indices: 7444695--7444928 Score: 301
Period size: 125 Copynumber: 1.9 Consensus size: 125
7444685 AAAAAAACTC
* * * *
7444695 TTAAAACGAGGCAATATTTCGTATTTAGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCG
1 TTAAAACGACGCAATATTTCGTATTTAGAAATTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCG
* ** *
7444760 ATTTTTCATTCGACTAAAATACAGAATATCCTTTTGAAATTTCATCTATGTTTTCTTAAA
66 ATCTACCATTCGACTAAAATACAGAATATCCTTTTAAAATTTCATCTATGTTTTCTTAAA
* * *
7444820 TTAAAATGACGCAATATTTCGTATTTGGAAATTCGATAAATCGTGCCCAATCGTGCTGGGTTTCG
1 TTAAAACGACGCAATATTTCGTATTTAGAAATTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCG
* * * *
7444885 ATCTACCGTTTGGC-CAAATAGCCA-AATATCCTTTTAAAATTTCA
66 ATCTACCATTCGACTAAAATA--CAGAATATCCTTTTAAAATTTCA
7444929 AATGCATGAG
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
124 5 0.05
125 85 0.92
126 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (125 bp):
TTAAAACGACGCAATATTTCGTATTTAGAAATTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCG
ATCTACCATTCGACTAAAATACAGAATATCCTTTTAAAATTTCATCTATGTTTTCTTAAA
Found at i:7450720 original size:232 final size:231
Alignment explanation
Indices: 7450296--7450761 Score: 896
Period size: 232 Copynumber: 2.0 Consensus size: 231
7450286 CTGAGCAGAA
*
7450296 TAGGATTGTTTCTTTGGGTTTTTGTCAAGAATACCAGCCAAACAAGATGACAATTAATACGTCAG
1 TAGGATTGTTTCTTTGGGTTTTTGTCAAGAATACCAGCCAAACAAGATGAAAATTAATACGTCAG
*
7450361 TGATAAGACCCTGATGAATAATGAGTGATGACACTTTAAGCATAAAAAATGGGCATTTCTCATGA
66 TGATAAGACCCTGATGAATAATGAGTGATGACACTTTAAGCATAAAAAAGGGGCATTTCTCATGA
*
7450426 CGTTTTACATTCATACCAATGTCATTCATAGTACATCTAGTTAAGAGCATTTGATTCATTTTGAT
131 CATTTTACATTCATACCAATGTCATTCATAGTACATCTAGTTAAGAGCATTTGATTCATTTTGAT
7450491 CATAGCATCCTAATTATTTGGCATAAGTATCACATC
196 CATAGCATCCTAATTATTTGGCATAAGTATCACATC
7450527 TAGGATTGTTTCTTTGGGTTTTTTGTCAAGAATACCAGCCAAACAAGATGAAAATTAATACGTCA
1 TAGGATTGTTTCTTTGGG-TTTTTGTCAAGAATACCAGCCAAACAAGATGAAAATTAATACGTCA
7450592 GTGATAAGACCCTGATGAATAATGAGTGATGACACTTTAAGCATAAAAAAGGGGCATTTCTCATG
65 GTGATAAGACCCTGATGAATAATGAGTGATGACACTTTAAGCATAAAAAAGGGGCATTTCTCATG
7450657 ACATTTTACATTCATACCAATGTCATTCATAGTACATCTAGTTAAGAGCATTTGATTCATTTTGA
130 ACATTTTACATTCATACCAATGTCATTCATAGTACATCTAGTTAAGAGCATTTGATTCATTTTGA
7450722 TCATAGCATCCTAATTATTTGGCATAAGTATCACATC
195 TCATAGCATCCTAATTATTTGGCATAAGTATCACATC
7450759 TAG
1 TAG
7450762 CTAGGAGCAT
Statistics
Matches: 231, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
231 18 0.08
232 213 0.92
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Consensus pattern (231 bp):
TAGGATTGTTTCTTTGGGTTTTTGTCAAGAATACCAGCCAAACAAGATGAAAATTAATACGTCAG
TGATAAGACCCTGATGAATAATGAGTGATGACACTTTAAGCATAAAAAAGGGGCATTTCTCATGA
CATTTTACATTCATACCAATGTCATTCATAGTACATCTAGTTAAGAGCATTTGATTCATTTTGAT
CATAGCATCCTAATTATTTGGCATAAGTATCACATC
Found at i:7450773 original size:64 final size:64
Alignment explanation
Indices: 7450690--7450813 Score: 203
Period size: 64 Copynumber: 1.9 Consensus size: 64
7450680 CATTCATAGT
* * *
7450690 ACATCTAGTTAAGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGTATC
1 ACATCTAGCTAAGAGCATTTGATTCATTTCGATCATAGCATCCTAAATATTTGGCATAAGTATC
* *
7450754 ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAAATGTTTGGCATAAG
1 ACATCTAGCTAAGAGCATTTGATTCATTTCGATCATAGCATCCTAAATATTTGGCATAAG
7450814 CATATATACA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (64 bp):
ACATCTAGCTAAGAGCATTTGATTCATTTCGATCATAGCATCCTAAATATTTGGCATAAGTATC
Found at i:7451202 original size:133 final size:133
Alignment explanation
Indices: 7450921--7451176 Score: 343
Period size: 133 Copynumber: 1.9 Consensus size: 133
7450911 AACAGGCTTC
* * * *
7450921 AAATTATAGATCTTATCTCCATGTATCAGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCC
1 AAATTACAGATCTTATCTCCATGTATCAGCTATAGAACAGATCAAAAATGGCGAGTCTTATCTCC
* * **** * *
7450986 ATGTATCGGGTATGGAACAAATTTTAGCCACTGGTGTTATCCTCCTGAAGTTGCAGGAAACAGAC
66 ATGTATAGGCTATGGAACAAATTTTAGCCACTAACCTTATCCTCCTGAAGTAGCAAGAAACAGAC
7451051 TGA
131 TGA
* *
7451054 AAATTACAGATCTTATCTCCATGTATCGGCTATAGAACAGGTCAAAAATGGCGAGTCTTATCTCC
1 AAATTACAGATCTTATCTCCATGTATCAGCTATAGAACAGATCAAAAATGGCGAGTCTTATCTCC
* * *
7451119 ATGTATAGGCTATGGAGCAGATTTTAGCCACTAACCTTAT-CTCTCTGAGGTAGCAAGA
66 ATGTATAGGCTATGGAACAAATTTTAGCCACTAACCTTATCCTC-CTGAAGTAGCAAGA
7451177 GAGCAGGTTG
Statistics
Matches: 105, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
132 3 0.03
133 102 0.97
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (133 bp):
AAATTACAGATCTTATCTCCATGTATCAGCTATAGAACAGATCAAAAATGGCGAGTCTTATCTCC
ATGTATAGGCTATGGAACAAATTTTAGCCACTAACCTTATCCTCCTGAAGTAGCAAGAAACAGAC
TGA
Found at i:7451237 original size:177 final size:176
Alignment explanation
Indices: 7451022--7451893 Score: 1149
Period size: 177 Copynumber: 4.9 Consensus size: 176
7451012 GCCACTGGTG
7451022 TTATCCTCCTGAAGTTGCAGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
1 TTATCCTCCTGAAGTTGCAGG-AACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* * * * *
7451087 AGAACAGGTCAAAAATGGCGAGTCTTATCTCCATGTATAGGCTATGGAGCAGATTTTAGCCACTA
65 GGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTG
*
7451152 ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTC
130 ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
** * *
7451199 TTATTTTCCTGAAATTGTAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
1 TTATCCTCCTGAAGTTGCAGGAA-CAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* **
7451264 GGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCATATTTTAGCCACCA
65 GGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTG
* * *
7451329 ACCTTATCTCTTTGAGGTAGCAATAGAGCAGGTTGAAGATACAAGTC
130 ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
* *
7451376 TTATCTTCCTGAAGTTGCAGGAAGTAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTATCCTCCTGAAGTTGCAGGAA-CAGACTG-AAAATTACAGATCTTATCTCCATGTATCGGCTA
* * *
7451441 TGGAGCAGATCAGAAATGGCGAATCTTATCTCCATGTATCTGCTATGGAGCAGATTTTAGCCAAC
64 TGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC-AC
*
7451506 -GACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCC
128 TGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
* * **** *
7451554 TTAACCCCCT-AAGCAATAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTATCCTCCTGAAGTTGCA-GG-AACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
* * * * *
7451618 TGGAGTAGATAAAAAATAGAGAGTCTTATCTTCATGTATCGGCTATGGAGCAGATTTTAGCCACT
64 TGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACT
* * **
7451683 GGCATTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGGGCC
129 GACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
* ** * * *
7451731 TTAACC-CCT-AAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTATCCTCCTGAAGTTGCA-GG-AACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
* * * * * *
7451794 TGAAGCAGATCAGAAATGGCAAGTCTTATCTCCATGTCTCGGCTATGGAGCAGATTTTAGCCGCG
64 TGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACT
* * * *
7451859 GGCCTTATCTATCTGAGGTAGCAAAATAGCAGGTT
129 GACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
7451894 AAAGGTATGA
Statistics
Matches: 627, Mismatches: 62, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
176 144 0.23
177 331 0.53
178 148 0.24
179 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (176 bp):
TTATCCTCCTGAAGTTGCAGGAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATG
GAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGA
CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
Found at i:7451588 original size:355 final size:353
Alignment explanation
Indices: 7451022--7451951 Score: 1221
Period size: 355 Copynumber: 2.6 Consensus size: 353
7451012 GCCACTGGTG
7451022 TTATCCTCCTGAAGTTGCAGGAAACAGACTG-AAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTAT-CTCCTGAAGTTGCAGG-AACAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTA
* * * * * * *
7451086 TAGAACAGGTCAAAAATGGCGAGTCTTATCTCCATGTATAGGCTATGGAGCAGATTTTAGCCACT
64 TGGAGCAGATCAGAAATGGCGAATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACG
* * * **** *
7451151 AACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATTTTCCT--GAAAT
129 GACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAAT
* * *
7451214 TGTAGG-AAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAA
194 AG--GGTAA-CAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAAAAA
* * * * *
7451278 ATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCATATTTTAGCCACCAACCTTATCTCTTTG
256 ATAGAGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACATTATCTCTCTG
* *
7451343 AGGTAGCAATAGAGCAGGTTGAAGATACAAGTC
321 AGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
*
7451376 TTATCTTCCTGAAGTTGCAGGAAGTAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTATC-TCCTGAAGTTGCAGGAA-CAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTA
*
7451441 TGGAGCAGATCAGAAATGGCGAATCTTATCTCCATGTATCTGCTATGGAGCAGATTTTAGCCAAC
64 TGGAGCAGATCAGAAATGGCGAATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC-AC
7451506 -GACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAA
128 GGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAA
*
7451570 TAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATAAAAAAT
193 TAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAAAAAAT
* ***
7451635 AGAGAGTCTTATCTTCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGCATTATCTCTCTGAG
258 AGAGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACATTATCTCTCTGAG
**
7451700 GTAGCAAGAGAGCAGGTTGAAGATACGGGCC
323 GTAGCAAGAGAGCAGGTTGAAGATACAAGCC
* * ** * *
7451731 TTAACCCCT-AAGCAGTAGGGTAACAGGCT-AAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTATCTCCTGAAGTTGCA-GG-AACAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTA
* * *
7451794 TGAAGCAGATCAGAAATGGC-AAGTCTTATCTCCATGTCTCGGCTATGGAGCAGATTTTAGCCGC
64 TGGAGCAGATCAGAAATGGCGAA-TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCAC
* * * * * * * *
7451858 GGGCCTTATCTATCTGAGGTAGCAAAATAGCAGGTTAAAGGTATGAGCCTTAACCCCCTAAGCAG
128 GGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAA
*
7451923 TAGGGTAATAGGCTGGAAAA-TACAGATCT
193 TAGGGTAACAGGCT-GAAAATTACAGATCT
7451952 CCCCTAAAAA
Statistics
Matches: 511, Mismatches: 53, Indels: 25
0.87 0.09 0.04
Matches are distributed among these distances:
352 3 0.01
353 176 0.34
354 39 0.08
355 284 0.56
356 4 0.01
357 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (353 bp):
TTATCTCCTGAAGTTGCAGGAACAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTATG
GAGCAGATCAGAAATGGCGAATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACGGA
CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAATAG
GGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAAAAAATAGA
GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACATTATCTCTCTGAGGTA
GCAAGAGAGCAGGTTGAAGATACAAGCC
Found at i:7452169 original size:44 final size:44
Alignment explanation
Indices: 7451952--7452177 Score: 120
Period size: 44 Copynumber: 5.3 Consensus size: 44
7451942 ATACAGATCT
*
7451952 CCCCTAAAAAGTAGTGGAGCAGATCGAAGATAGCAAGCCTTAAC
1 CCCCTAAACAGTAGTGGAGCAGATCGAAGATAGCAAGCCTTAAC
* ** * * *
7451996 CTCCTAAGTAGTAG-GGTAGCAGGTTGGGAA-ATA-C-AG----ATC
1 CCCCTAAACAGTAGTGG-AGCA-GAT-CGAAGATAGCAAGCCTTAAC
* * * *
7452035 TCCCCTAAACAATAGTAGAGCAGATCGAAGACAGTAAGCCTTAAC
1 -CCCCTAAACAGTAGTGGAGCAGATCGAAGATAGCAAGCCTTAAC
** * * * * * *
7452080 CCCCTACGCAGTAG-GGTAACAGGCTAGAAAATA-C-AG-ATT--T
1 CCCCTAAACAGTAGTGG-AGCA-GATCGAAGATAGCAAGCCTTAAC
7452120 CCCCTAAACAGTAGTGGAGCAGATCGAAGATAGCAAGCCTTAAC
1 CCCCTAAACAGTAGTGGAGCAGATCGAAGATAGCAAGCCTTAAC
*
7452164 CCCCTAAGCAGTAG
1 CCCCTAAACAGTAG
7452178 GGTAACAGGC
Statistics
Matches: 125, Mismatches: 37, Indels: 40
0.62 0.18 0.20
Matches are distributed among these distances:
38 3 0.02
39 14 0.11
40 30 0.24
41 7 0.06
42 4 0.03
43 7 0.06
44 43 0.34
45 14 0.11
46 3 0.02
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (44 bp):
CCCCTAAACAGTAGTGGAGCAGATCGAAGATAGCAAGCCTTAAC
Found at i:7452299 original size:44 final size:43
Alignment explanation
Indices: 7452248--7452391 Score: 134
Period size: 44 Copynumber: 3.3 Consensus size: 43
7452238 GAGCCTTAAC
7452248 CCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAGATCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCAGAAGATTACAGATCTTATCT
* * * * * *
7452292 GCCTAAGCAGTAGTGGAGCAGATCA-AAGACAGTA-AG-CCTTA-CC
1 CCCTAAGCAGTAG-GGAACAG-GCAGAAG--ATTACAGATCTTATCT
* *
7452335 CCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCAGAAGATTACAGATCTTATCT
7452379 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
7452392 TGGAGTAGAT
Statistics
Matches: 77, Mismatches: 14, Indels: 18
0.71 0.13 0.17
Matches are distributed among these distances:
41 3 0.04
42 5 0.06
43 23 0.30
44 37 0.48
45 6 0.08
46 3 0.04
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGAACAGGCAGAAGATTACAGATCTTATCT
Found at i:7452340 original size:87 final size:83
Alignment explanation
Indices: 7451903--7452401 Score: 581
Period size: 84 Copynumber: 5.9 Consensus size: 83
7451893 TAAAGGTATG
* *
7451903 AGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGGAAAATACAGATCTCCCCTAAAAAGTAGTG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGG-AAATACAGATCTCCCCTAAACAGTAGTG
*
7451968 GAGCAGATCGAAGATAGCA
65 GAGCAGATCGAAGATAGTA
* * * * * *
7451987 AGCCTTAACCTCCTAAGTAGTAGGGTAGCAGGTTGGGAAATACAGATCTCCCCTAAACAATAGTA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GGAAATACAGATCTCCCCTAAACAGTAGTG
*
7452052 GAGCAGATCGAAGACAGTA
65 GAGCAGATCGAAGATAGTA
* * *
7452071 AGCCTTAACCCCCTACGCAGTAGGGTAACAGGCTAGAAAATACAGATTTCCCCTAAACAGTAGTG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GGAAATACAGATCTCCCCTAAACAGTAGTG
*
7452136 GAGCAGATCGAAGATAGCA
65 GAGCAGATCGAAGATAGTA
* * *
7452155 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGGAAATACAGATCTCCCTTAAGCACTAGTG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GGAAATACAGATCTCCCCTAAACAGTAGTG
* * *
7452220 AAGCAGATCGAAGATGGTG
65 GAGCAGATCGAAGATAGTA
* * *
7452239 AGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGC-AGAAGATTACAGATCTTATCTGCCTAAGCAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAA-A-TACAGATC---TC-CCCTAAACAG
* *
7452302 TAGTGGAGCAGATCAAAGACAGTA
60 TAGTGGAGCAGATCGAAGATAGTA
* * *
7452326 AGCCTT-ACCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAA-TACAGATC---TC-CCCTAAACAGT
*
7452390 AGTGGAGTAGAT
61 AGTGGAGCAGAT
7452402 TGAAACGAAA
Statistics
Matches: 359, Mismatches: 47, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
81 3 0.01
82 1 0.00
83 32 0.09
84 224 0.62
85 2 0.01
86 3 0.01
87 92 0.26
88 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (83 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAATACAGATCTCCCCTAAACAGTAGTGG
AGCAGATCGAAGATAGTA
Found at i:7452406 original size:44 final size:45
Alignment explanation
Indices: 7452276--7452407 Score: 121
Period size: 44 Copynumber: 3.0 Consensus size: 45
7452266 CAGGCAGAAG
* **
7452276 ATTACAGATCTTATCTGCCTAAGCAGTAGTGGAGCAGATCAAAGAC
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAA-AC
* * * * **
7452322 AGTA-AG-CCTTA-CCCCCTAAGCAGTAG-GGAAACAGGCTGAAA-
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATTGAAAC
*
7452363 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAAC
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAAC
7452408 GAAAATTCCT
Statistics
Matches: 64, Mismatches: 16, Indels: 13
0.69 0.17 0.14
Matches are distributed among these distances:
41 3 0.05
42 5 0.08
43 23 0.36
44 26 0.41
45 4 0.06
46 3 0.05
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (45 bp):
ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAAC
Found at i:7453147 original size:14 final size:14
Alignment explanation
Indices: 7453128--7453160 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7453118 TATTTTAATT
7453128 TTTTCTTGTTGT-TA
1 TTTTCTT-TTGTATA
7453142 TTTTCTTTTGTATA
1 TTTTCTTTTGTATA
7453156 TTTTC
1 TTTTC
7453161 ATTCTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.09, C:0.09, G:0.09, T:0.73
Consensus pattern (14 bp):
TTTTCTTTTGTATA
Found at i:7453304 original size:20 final size:21
Alignment explanation
Indices: 7453279--7453321 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
7453269 ATATTATTTA
7453279 TTTGTATAT-ATATATAATGT
1 TTTGTATATCATATATAATGT
* *
7453299 TTTGTATATCATTTATACTGT
1 TTTGTATATCATATATAATGT
7453320 TT
1 TT
7453322 CGTTACAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.28, C:0.05, G:0.09, T:0.58
Consensus pattern (21 bp):
TTTGTATATCATATATAATGT
Found at i:7454198 original size:125 final size:125
Alignment explanation
Indices: 7453976--7454209 Score: 310
Period size: 125 Copynumber: 1.9 Consensus size: 125
7453966 AAAAAACCTC
* * * *
7453976 TTAAAATGAGGCAATATTCCGTATCTAGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCG
1 TTAAAATGAGGCAATATTCCGTATCTAGAAATTCGAGAAATCGTGCCCAATCGTGCTAGGTTTCG
** *
7454041 ATTTTTCATTTGACTAAAATACAGAATATCCTTTTGAAATTTCATCCATGTTTTCTTAAA
66 ATTTACCATTTGACTAAAATACAGAATATCCTTTTAAAATTTCATCCATGTTTTCTTAAA
* * * *
7454101 TTAAAATGAGGCAATATTTCGTATTTGGAAATTCGATAAATCGTGCCCAATCGTGCTAGGTTTCG
1 TTAAAATGAGGCAATATTCCGTATCTAGAAATTCGAGAAATCGTGCCCAATCGTGCTAGGTTTCG
* * *
7454166 ATTTACCGTTTGGC-CAAATAGCCA-AATATCCTTTTAAAATTTCA
66 ATTTACCATTTGACTAAAATA--CAGAATATCCTTTTAAAATTTCA
7454210 AATGCACGAG
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
124 5 0.05
125 86 0.92
126 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (125 bp):
TTAAAATGAGGCAATATTCCGTATCTAGAAATTCGAGAAATCGTGCCCAATCGTGCTAGGTTTCG
ATTTACCATTTGACTAAAATACAGAATATCCTTTTAAAATTTCATCCATGTTTTCTTAAA
Found at i:7457134 original size:19 final size:19
Alignment explanation
Indices: 7457110--7457147 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7457100 GAAATGAATA
*
7457110 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
7457129 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
7457148 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:7458061 original size:19 final size:19
Alignment explanation
Indices: 7458037--7458075 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7458027 ATGTATATAT
7458037 ATAAAATAA-AGAAAATGAA
1 ATAAAATAACA-AAAATGAA
7458056 ATAAAATAACAAAAATGAA
1 ATAAAATAACAAAAATGAA
7458075 A
1 A
7458076 AATGAACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (19 bp):
ATAAAATAACAAAAATGAA
Found at i:7465712 original size:19 final size:20
Alignment explanation
Indices: 7465675--7465713 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7465665 CAACTAATTG
7465675 GTGATGTAATAATATATTTT
1 GTGATGTAATAATATATTTT
7465695 GTGAT-TAAT-ATATAATTTT
1 GTGATGTAATAATAT-ATTTT
7465714 TAATAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (20 bp):
GTGATGTAATAATATATTTT
Found at i:7468970 original size:22 final size:23
Alignment explanation
Indices: 7468924--7468971 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
7468914 AAAACATTAG
*
7468924 AAACCAGAAATTTTTGGGATCAA
1 AAACCAGAAATTTTTGGGATAAA
7468947 AAACCAGAAATTTTTGGGA-AAA
1 AAACCAGAAATTTTTGGGATAAA
7468969 AAA
1 AAA
7468972 TAAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.23
Consensus pattern (23 bp):
AAACCAGAAATTTTTGGGATAAA
Found at i:7470536 original size:11 final size:11
Alignment explanation
Indices: 7470520--7470544 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7470510 AGTTGGAGCA
7470520 AACCCGAAGGC
1 AACCCGAAGGC
7470531 AACCCGAAGGC
1 AACCCGAAGGC
7470542 AAC
1 AAC
7470545 TGGTGTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.36, G:0.24, T:0.00
Consensus pattern (11 bp):
AACCCGAAGGC
Found at i:7477661 original size:46 final size:46
Alignment explanation
Indices: 7477602--7477777 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
7477592 TATTTGGGCA
*
7477602 TCCGAGCTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
** * * * *
7477648 TTTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
7477693 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
7477741 CCCGAGCTCGTTGAGTTCAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7477778 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7477757 original size:93 final size:93
Alignment explanation
Indices: 7477598--7477769 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
7477588 GGAATATTTG
* ***
7477598 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAATGTTTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
7477663 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTCAGTCCGAGTTCGTGAGATGTAACTA
* *
7477691 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAG
7477756 TTCAGTCCGAGTTC
66 TTCAGTCCGAGTTC
7477770 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTCAGTCCGAGTTCGTGAGATGTAACTA
Found at i:7483843 original size:47 final size:49
Alignment explanation
Indices: 7483774--7483902 Score: 173
Period size: 47 Copynumber: 2.7 Consensus size: 49
7483764 GGAATATTTG
*
7483774 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGT-AACTA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGTGAAC-A
*
7483821 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGTGAACA
7483871 --C--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
7483903 TATGGGCGGG
Statistics
Matches: 76, Mismatches: 2, Indels: 9
0.87 0.02 0.10
Matches are distributed among these distances:
46 31 0.41
47 33 0.43
48 3 0.04
50 6 0.08
51 3 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (49 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGTGAACA
Found at i:7483893 original size:46 final size:48
Alignment explanation
Indices: 7483779--7483907 Score: 171
Period size: 46 Copynumber: 2.8 Consensus size: 48
7483769 ATTTGGGCAT
* *
7483779 CCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAACTA-GCA
7483825 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC-A-C-
1 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AACTAGCA
7483872 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7483908 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 2, Indels: 9
0.87 0.02 0.10
Matches are distributed among these distances:
46 36 0.47
47 28 0.37
48 3 0.04
50 6 0.08
51 3 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (48 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAACTAGCA
Found at i:7487918 original size:2 final size:2
Alignment explanation
Indices: 7487913--7487945 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7487903 CACATATGCC
*
7487913 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7487946 CATTTTCTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7495698 original size:26 final size:26
Alignment explanation
Indices: 7495638--7495692 Score: 89
Period size: 23 Copynumber: 2.2 Consensus size: 26
7495628 TACTTATCAC
7495638 ATATTTTAACCTAGTATAAAATATGA
1 ATATTTTAACCTAGTATAAAATATGA
7495664 ATATTTTAA-CTA-TAT-AAATATGA
1 ATATTTTAACCTAGTATAAAATATGA
7495687 ATATTT
1 ATATTT
7495693 GTTTAAATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 14 0.48
24 3 0.10
25 3 0.10
26 9 0.31
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.44
Consensus pattern (26 bp):
ATATTTTAACCTAGTATAAAATATGA
Found at i:7497196 original size:3 final size:3
Alignment explanation
Indices: 7497188--7497213 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7497178 AAAGAAAGCA
7497188 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
7497214 CAACAACAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7497227 original size:15 final size:15
Alignment explanation
Indices: 7497209--7497240 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7497199 TAATAATAAT
7497209 AATAACAACAACAAC
1 AATAACAACAACAAC
7497224 AATAACAACAACAAC
1 AATAACAACAACAAC
7497239 AA
1 AA
7497241 CAATAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.06
Consensus pattern (15 bp):
AATAACAACAACAAC
Found at i:7497227 original size:18 final size:18
Alignment explanation
Indices: 7497206--7497249 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
7497196 TAATAATAAT
7497206 AATAATAACAACAACAAC
1 AATAATAACAACAACAAC
*
7497224 AATAACAACAACAACAAC
1 AATAATAACAACAACAAC
7497242 AATAATAA
1 AATAATAA
7497250 AGAAGACAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.68, C:0.20, G:0.00, T:0.11
Consensus pattern (18 bp):
AATAATAACAACAACAAC
Found at i:7497261 original size:3 final size:3
Alignment explanation
Indices: 7497212--7497243 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7497202 TAATAATAAT
*
7497212 AAC AAC AAC AAC AAT AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
7497244 TAATAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.28, G:0.00, T:0.03
Consensus pattern (3 bp):
AAC
Found at i:7501444 original size:22 final size:21
Alignment explanation
Indices: 7501409--7501463 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
7501399 ATTATTATTC
*
7501409 TATTTTTTAAAATTTCTTTATA
1 TATTTTTTAAAATTT-TTAATA
**
7501431 TATTTTTTTGAATTTTTAATA
1 TATTTTTTAAAATTTTTAATA
* *
7501452 AATTTTTAAAAA
1 TATTTTTTAAAA
7501464 AATATATAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 13 0.50
22 13 0.50
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (21 bp):
TATTTTTTAAAATTTTTAATA
Found at i:7501504 original size:18 final size:19
Alignment explanation
Indices: 7501483--7501523 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7501473 ATTTTATATT
*
7501483 TTTTATAAA-TATTTTGAA
1 TTTTAAAAACTATTTTGAA
7501501 TTTTAAAAACTATTTTGAA
1 TTTTAAAAACTATTTTGAA
7501520 TTTT
1 TTTT
7501524 TTTATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (19 bp):
TTTTAAAAACTATTTTGAA
Found at i:7501933 original size:18 final size:19
Alignment explanation
Indices: 7501911--7501955 Score: 83
Period size: 18 Copynumber: 2.4 Consensus size: 19
7501901 GATATATTAA
7501911 AAAATTAAATTAAATTGTT
1 AAAATTAAATTAAATTGTT
7501930 -AAATTAAATTAAATTGTT
1 AAAATTAAATTAAATTGTT
7501948 AAAATTAA
1 AAAATTAA
7501956 GTTTAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (19 bp):
AAAATTAAATTAAATTGTT
Found at i:7501950 original size:13 final size:13
Alignment explanation
Indices: 7501915--7501939 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7501905 TATTAAAAAA
7501915 TTAAATTAAATTG
1 TTAAATTAAATTG
7501928 TTAAATTAAATT
1 TTAAATTAAATT
7501940 AAATTGTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
TTAAATTAAATTG
Found at i:7508002 original size:117 final size:117
Alignment explanation
Indices: 7507796--7508025 Score: 399
Period size: 117 Copynumber: 2.0 Consensus size: 117
7507786 CCGAATTGAC
* *
7507796 AATTGATGGAGATTACCGAAGCAACCTAATCACCCATAATTAGATTTGATTTATTCTTCCTTTTT
1 AATTGATGGAGATTACCGAAGCAAACTAATCACCCATAATCAGATTTGATTTATTCTTCCTTTTT
*
7507861 AATCTTTTAAATTTTAATCTTTTATGTTGTTTTATTTTTATCATTATATGAA
66 AATCTTTTAAATTTTAATCTTTTATGTTGTTTTACTTTTATCATTATATGAA
*
7507913 AATTGATGGAGATTACCGAAGCAAACTAATCACCCATAATCATATTTGATTTATTCTT-CTTTTG
1 AATTGATGGAGATTACCGAAGCAAACTAATCACCCATAATCAGATTTGATTTATTCTTCCTTTT-
*
7507977 TAATCTTTTAAATTTTATTCTTTTATGTTGTTTTACTTTTATCATTATA
65 TAATCTTTTAAATTTTAATCTTTTATGTTGTTTTACTTTTATCATTATA
7508026 AAACCCCAAA
Statistics
Matches: 107, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
116 5 0.05
117 102 0.95
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.48
Consensus pattern (117 bp):
AATTGATGGAGATTACCGAAGCAAACTAATCACCCATAATCAGATTTGATTTATTCTTCCTTTTT
AATCTTTTAAATTTTAATCTTTTATGTTGTTTTACTTTTATCATTATATGAA
Found at i:7509818 original size:9 final size:9
Alignment explanation
Indices: 7509804--7509830 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7509794 GATGGCTTAT
7509804 TTTGGTATG
1 TTTGGTATG
7509813 TTTGGTATG
1 TTTGGTATG
7509822 TTTGGTATG
1 TTTGGTATG
7509831 AATGTGGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.33, T:0.56
Consensus pattern (9 bp):
TTTGGTATG
Found at i:7520772 original size:43 final size:43
Alignment explanation
Indices: 7520711--7520792 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
7520701 AGAGGACCAG
7520711 TTGGAAATAGACATGTTTGGATCATATTGCATATAATTTTCAT
1 TTGGAAATAGACATGTTTGGATCATATTGCATATAATTTTCAT
* *
7520754 TTGGAAATAGACATGTTTGGATTATATTGCATGTAATTT
1 TTGGAAATAGACATGTTTGGATCATATTGCATATAATTT
7520793 ACATACTACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (43 bp):
TTGGAAATAGACATGTTTGGATCATATTGCATATAATTTTCAT
Found at i:7522601 original size:25 final size:25
Alignment explanation
Indices: 7522566--7522636 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
7522556 ACACACCATA
*
7522566 GCTCTCTTGAGCTTTCCGATACTTG
1 GCTCTCATGAGCTTTCCGATACTTG
*
7522591 GCTCTCATGAGC-TTCTCGATATTTG
1 GCTCTCATGAGCTTTC-CGATACTTG
* *
7522616 GCT-TGCAAGAGCTTTCTGATA
1 GCTCT-CATGAGCTTTCCGATA
7522637 TACAGCTTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 4 0.10
25 32 0.82
26 3 0.08
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (25 bp):
GCTCTCATGAGCTTTCCGATACTTG
Found at i:7522724 original size:75 final size:75
Alignment explanation
Indices: 7522585--7522727 Score: 171
Period size: 75 Copynumber: 1.9 Consensus size: 75
7522575 AGCTTTCCGA
* * * * * * *
7522585 TACTTGGCTCTCATGAGCTTCTCGATATTTGGCTTGCAAGAGCTTTCTGATATACAGCTTGTATG
1 TACTTGGCTCACACGAGCTTCCCGATATATGGCTTGAAAGAGCTTTCTCATATACAGCTAGTATG
7522650 AGCTTCCTGT
66 AGCTTCCTGT
* * * *
7522660 TACTTTGCTCACACGAGCTTCCCGTTATATGTCTTGAAAGAGCTTTC-CATTTACATGCTAGTAT
1 TACTTGGCTCACACGAGCTTCCCGATATATGGCTTGAAAGAGCTTTCTCATATACA-GCTAGTAT
7522724 GAGC
65 GAGC
7522728 ATACAAGTAC
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
74 6 0.11
75 50 0.89
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (75 bp):
TACTTGGCTCACACGAGCTTCCCGATATATGGCTTGAAAGAGCTTTCTCATATACAGCTAGTATG
AGCTTCCTGT
Found at i:7531169 original size:35 final size:35
Alignment explanation
Indices: 7531126--7531259 Score: 160
Period size: 35 Copynumber: 3.8 Consensus size: 35
7531116 GTTTGGCGTG
* *
7531126 TTTCGGTTGGACCAACTCTTATGAGCATTGGCATA
1 TTTCGGTTGGACTAGCTCTTATGAGCATTGGCATA
* * *
7531161 TTTTGGTTGGACTAGCTCTTATGAGCATTGGCGTG
1 TTTCGGTTGGACTAGCTCTTATGAGCATTGGCATA
* * *
7531196 TTTCGGTTGGATTAGCTCTTATGAGCACTGGCATG
1 TTTCGGTTGGACTAGCTCTTATGAGCATTGGCATA
* * * *
7531231 TTACGATTAGACTAGCTCTTGTGAGCATT
1 TTTCGGTTGGACTAGCTCTTATGAGCATT
7531260 TGATGTGTTT
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 84 1.00
ACGTcount: A:0.19, C:0.17, G:0.26, T:0.37
Consensus pattern (35 bp):
TTTCGGTTGGACTAGCTCTTATGAGCATTGGCATA
Found at i:7531244 original size:70 final size:70
Alignment explanation
Indices: 7531118--7531259 Score: 194
Period size: 70 Copynumber: 2.0 Consensus size: 70
7531108 TACTCTTTGT
* ** * *
7531118 TTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCATTGGCATATTTTGGTTGGACTAGCTCTTAT
1 TTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCACTGGCATATTACGATTAGACTAGCTCTTAT
7531183 GAGCA
66 GAGCA
** * * *
7531188 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCACTGGCATGTTACGATTAGACTAGCTCTTGT
1 TTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCACTGGCATATTACGATTAGACTAGCTCTTAT
7531253 GAGCA
66 GAGCA
7531258 TT
1 TT
7531260 TGATGTGTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.18, C:0.17, G:0.27, T:0.37
Consensus pattern (70 bp):
TTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCACTGGCATATTACGATTAGACTAGCTCTTAT
GAGCA
Found at i:7531417 original size:22 final size:22
Alignment explanation
Indices: 7531371--7531435 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
7531361 TGGTAAGGTA
*
7531371 ATGTTCAATGAAAGT-ATG-TTT
1 ATGTTC-ATGAAATTGATGATTT
7531392 ATGTTCATGAAATTGATGATTT
1 ATGTTCATGAAATTGATGATTT
*
7531414 ATGTTCATGAAGTTGATGATTT
1 ATGTTCATGAAATTGATGATTT
7531436 CAAATGATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
20 7 0.17
21 9 0.22
22 24 0.60
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.45
Consensus pattern (22 bp):
ATGTTCATGAAATTGATGATTT
Found at i:7536459 original size:40 final size:40
Alignment explanation
Indices: 7536372--7536475 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
7536362 ACACGATATC
* * *
7536372 TCACACACTAAGTGCCGTACATAGCTAAATCTATCTCAAA
1 TCACACACTAAGTGCCATATATAGCTAAAGCTATCTCAAA
* **
7536412 TCACACACTAAGTGCCATATATAGCTAAAGCTATGTTGAA
1 TCACACACTAAGTGCCATATATAGCTAAAGCTATCTCAAA
** *
7536452 TTGCACACTAAGTGTCATATATAG
1 TCACACACTAAGTGCCATATATAG
7536476 TGTCATATAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (40 bp):
TCACACACTAAGTGCCATATATAGCTAAAGCTATCTCAAA
Found at i:7536479 original size:12 final size:12
Alignment explanation
Indices: 7536462--7536488 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7536452 TTGCACACTA
7536462 AGTGTCATATAT
1 AGTGTCATATAT
7536474 AGTGTCATATAT
1 AGTGTCATATAT
7536486 AGT
1 AGT
7536489 CGAAGCTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (12 bp):
AGTGTCATATAT
Found at i:7537295 original size:4 final size:5
Alignment explanation
Indices: 7537279--7537312 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
7537269 TTATTTTTAT
7537279 TTTTC TTTT- TCTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC T-TTTC TTTTC TTTTC TTTTC TTTT
7537313 TGGGCCTGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 1 0.04
5 25 0.93
6 1 0.04
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:7537354 original size:3 final size:3
Alignment explanation
Indices: 7537348--7537378 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
7537338 TATTATCATC
7537348 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT A
1 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT A
7537379 TTATTATCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ACT
Found at i:7537963 original size:145 final size:142
Alignment explanation
Indices: 7537698--7537982 Score: 403
Period size: 145 Copynumber: 2.0 Consensus size: 142
7537688 TTTTTTTTTT
* * **
7537698 AAAAAAGAGAAAGTTTAGATTTTTAAAATAAAAATATGATTTTTAGTCATATTAAAGGAAATTTA
1 AAAAAAAAGAAAATTTAGATTTTTAAAATAAAAATATGATTTTTAGTCATATTAAAAAAAATTTA
*
7537763 ATTCTTAAAACAAAGTTTTGATCTTTTTCAATTATTTCAAAATAAATTTTAGATTTTTAAGAAAA
66 ATTCTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAATTTTAGATTTTTAAGAAAA
*
7537828 ATAGTGATTTAA
131 ATAGTAATTTAA
* * *
7537840 AAAAAAAAGAAAATTTAGATTTTTAAAATAAAATTCT-ATTTTTTAGTCATTTTAAGAAAAAATT
1 AAAAAAAAGAAAATTTAGATTTTTAAAATAAAAATATGA-TTTTTAGTCATATTAA-AAAAAATT
* *
7537904 TAAATTTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTTAAAATAAAGTTTT-GATTTTTAA
64 T-AA-TTCTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAA-TTTTAGATTTTTAA
*
7537968 GAAATATAGTAATTT
126 GAAAAATAGTAATTT
7537983 TTTAAAAGAA
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
141 1 0.01
142 48 0.38
143 7 0.06
144 2 0.02
145 64 0.51
146 4 0.03
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.42
Consensus pattern (142 bp):
AAAAAAAAGAAAATTTAGATTTTTAAAATAAAAATATGATTTTTAGTCATATTAAAAAAAATTTA
ATTCTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAATTTTAGATTTTTAAGAAAA
ATAGTAATTTAA
Found at i:7541203 original size:47 final size:47
Alignment explanation
Indices: 7541136--7541225 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
7541126 ATTTTGTTTA
*
7541136 TTTTAGGTAAAGCGATAGATAACCATTTATATGGCCTATGTATTCTG
1 TTTTAGGTAAAACGATAGATAACCATTTATATGGCCTATGTATTCTG
7541183 TTTTAGGTAAAACGATAGATAACCATTTATATGGCCTATGTAT
1 TTTTAGGTAAAACGATAGATAACCATTTATATGGCCTATGTAT
7541226 GCAAAGAGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (47 bp):
TTTTAGGTAAAACGATAGATAACCATTTATATGGCCTATGTATTCTG
Found at i:7542578 original size:48 final size:48
Alignment explanation
Indices: 7542507--7542687 Score: 220
Period size: 48 Copynumber: 3.8 Consensus size: 48
7542497 CATTAAGGGA
* *
7542507 TACTTTGATTTAGCTTCGGGCCATTATATCGGCACTTCGGGTGTGAGT
1 TACTTTGATTTAGCTTCGGGCCATGATATCAGCACTTCGGGTGTGAGT
* *
7542555 TACTTTGATTTGGCTTCGGGCCATGATATCAGCACTTCGGGTGTGAAT
1 TACTTTGATTTAGCTTCGGGCCATGATATCAGCACTTCGGGTGTGAGT
* * * * * *
7542603 T-TTATTGATTTGGCTTCGGGCCATGATATTAGCACTTCTGGTGCGAGA
1 TACT-TTGATTTAGCTTCGGGCCATGATATCAGCACTTCGGGTGTGAGT
* * * *
7542651 TACATTGAGTTAGCTTTGGGCCATGATATGAGCACTT
1 TACTTTGATTTAGCTTCGGGCCATGATATCAGCACTT
7542688 AATGTGCGAT
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
47 1 0.01
48 114 0.99
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.36
Consensus pattern (48 bp):
TACTTTGATTTAGCTTCGGGCCATGATATCAGCACTTCGGGTGTGAGT
Found at i:7542675 original size:96 final size:96
Alignment explanation
Indices: 7542511--7542687 Score: 246
Period size: 96 Copynumber: 1.8 Consensus size: 96
7542501 AAGGGATACT
* * * * * * *
7542511 TTGATTTAGCTTCGGGCCATTATATCGGCACTTCGGGTGTGAGTTACTTTGATTTGGCTTCGGGC
1 TTGATTTAGCTTCGGGCCATGATATCAGCACTTCGGGTGCGAGATACATTGAGTTAGCTTCGGGC
7542576 CATGATATCAGCACTTCGGGTGTGAATTTTA
66 CATGATATCAGCACTTCGGGTGTGAATTTTA
* * * *
7542607 TTGATTTGGCTTCGGGCCATGATATTAGCACTTCTGGTGCGAGATACATTGAGTTAGCTTTGGGC
1 TTGATTTAGCTTCGGGCCATGATATCAGCACTTCGGGTGCGAGATACATTGAGTTAGCTTCGGGC
*
7542672 CATGATATGAGCACTT
66 CATGATATCAGCACTT
7542688 AATGTGCGAT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 69 1.00
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.36
Consensus pattern (96 bp):
TTGATTTAGCTTCGGGCCATGATATCAGCACTTCGGGTGCGAGATACATTGAGTTAGCTTCGGGC
CATGATATCAGCACTTCGGGTGTGAATTTTA
Found at i:7557998 original size:40 final size:37
Alignment explanation
Indices: 7557892--7558057 Score: 164
Period size: 35 Copynumber: 4.6 Consensus size: 37
7557882 CATGGCAAAG
* *
7557892 TGTGAAATGTAGGTATGG--TATCATACATAATGAGT
1 TGTGAAATGTAGGTATGGTATATCATCCATACTGAGT
* *
7557927 TGTGAAATGTAGGTATGGTAT-T-ATCCGTACTGAGC
1 TGTGAAATGTAGGTATGGTATATCATCCATACTGAGT
7557962 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTA-TATC--ATCCATACTGAGT
** * * *
7558002 TAAGAAATGTAGGTATGGCATTTC--CCATACCGAGT
1 TGTGAAATGTAGGTATGGTATATCATCCATACTGAGT
**
7558037 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
7558058 TTCAATGAGA
Statistics
Matches: 110, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
35 75 0.68
36 2 0.02
37 2 0.02
39 3 0.03
40 28 0.25
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.33
Consensus pattern (37 bp):
TGTGAAATGTAGGTATGGTATATCATCCATACTGAGT
Found at i:7558014 original size:75 final size:75
Alignment explanation
Indices: 7557892--7558062 Score: 194
Period size: 75 Copynumber: 2.4 Consensus size: 75
7557882 CATGGCAAAG
** *
7557892 TGTGAAATGTAGGTATGG---TATC--ATACATAATGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATACATAATGAGTTAAGAAATGTAGGTATGGCATT-TC
* *
7557951 CCGTACTGAGC
65 CCATACCGAGC
* *
7557962 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATACATAATGAGTTAAGAAATGTAGGTATGGCATTTCC
*
7558027 CATACCGAGT
66 CATACCGAGC
**
7558037 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
7558063 TGAGAAAAAC
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 58 0.68
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATACATAATGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:7558262 original size:56 final size:56
Alignment explanation
Indices: 7558176--7558287 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
7558166 TCCAAATGAA
7558176 AGAGATTGAGTAGTTGTTATTGTTGAGCTCAACTATGTGAATTATTATAACAATGG
1 AGAGATTGAGTAGTTGTTATTGTTGAGCTCAACTATGTGAATTATTATAACAATGG
7558232 AGAGATTGAGTAGTTGTTATTGTTGAGCTCAACTATGTGAATTATTATAACAATGG
1 AGAGATTGAGTAGTTGTTATTGTTGAGCTCAACTATGTGAATTATTATAACAATGG
7558288 TTGTGAATCG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.38
Consensus pattern (56 bp):
AGAGATTGAGTAGTTGTTATTGTTGAGCTCAACTATGTGAATTATTATAACAATGG
Found at i:7568664 original size:18 final size:18
Alignment explanation
Indices: 7568643--7568681 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
7568633 ACTTCTTCGA
7568643 ATTTGTTTACCTATTATT
1 ATTTGTTTACCTATTATT
*
7568661 ATTTGTTTATCTATTATT
1 ATTTGTTTACCTATTATT
7568679 ATT
1 ATT
7568682 ATTCATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.08, G:0.05, T:0.64
Consensus pattern (18 bp):
ATTTGTTTACCTATTATT
Found at i:7583943 original size:19 final size:19
Alignment explanation
Indices: 7583919--7583958 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
7583909 TTCATGTAAT
7583919 AACTAATTTATTTATCTTC
1 AACTAATTTATTTATCTTC
7583938 AACTAATTTATTTATCTTC
1 AACTAATTTATTTATCTTC
7583957 AA
1 AA
7583959 TTGTTGTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (19 bp):
AACTAATTTATTTATCTTC
Found at i:7585734 original size:18 final size:19
Alignment explanation
Indices: 7585700--7585735 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7585690 TGAGGAAAAT
7585700 CTCAAACACACAAATGAAA
1 CTCAAACACACAAATGAAA
*
7585719 CTCAAACAGA-AAATGAA
1 CTCAAACACACAAATGAA
7585736 GAAATAGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.58, C:0.22, G:0.08, T:0.11
Consensus pattern (19 bp):
CTCAAACACACAAATGAAA
Found at i:7588956 original size:14 final size:14
Alignment explanation
Indices: 7588937--7588978 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
7588927 ACTGTGTTTT
7588937 TATATATATATGTG
1 TATATATATATGTG
*
7588951 TATATATATATTTCG
1 TATATATATATGT-G
7588966 TATAT-TA-ATGTG
1 TATATATATATGTG
7588978 T
1 T
7588979 GTTGAAAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 2 0.08
13 3 0.12
14 14 0.56
15 6 0.24
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.52
Consensus pattern (14 bp):
TATATATATATGTG
Found at i:7593591 original size:24 final size:25
Alignment explanation
Indices: 7593564--7593612 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7593554 CTTTTTTTAT
*
7593564 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
7593588 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
7593613 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:7593605 original size:25 final size:23
Alignment explanation
Indices: 7593576--7593640 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
7593566 AATAAAAAAC
*
7593576 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
7593601 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
7593622 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
7593641 AAAAATAAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:7593639 original size:19 final size:20
Alignment explanation
Indices: 7593602--7593640 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
7593592 TCAAATACAT
7593602 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
7593622 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
7593641 AAAAATAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:7595458 original size:20 final size:20
Alignment explanation
Indices: 7595433--7595472 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7595423 TCGTGGGAGT
*
7595433 TAACAAGTCTACCAGAATGA
1 TAACAAGTATACCAGAATGA
*
7595453 TAACAATTATACCAGAATGA
1 TAACAAGTATACCAGAATGA
7595473 CATAATCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.17, G:0.12, T:0.23
Consensus pattern (20 bp):
TAACAAGTATACCAGAATGA
Found at i:7596967 original size:24 final size:25
Alignment explanation
Indices: 7596916--7596974 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
7596906 TAGCCCTCTC
* * * *
7596916 GAGCTTCCCGTTATATTGTTCTTGG
1 GAGCTTCCTGTTATATAGCTCTTCG
7596941 GAGCTTCCTGTTA-ATAGCTCTTCG
1 GAGCTTCCTGTTATATAGCTCTTCG
*
7596965 GAGCATCCTG
1 GAGCTTCCTG
7596975 ATTGGTTGGG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 17 0.59
25 12 0.41
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.37
Consensus pattern (25 bp):
GAGCTTCCTGTTATATAGCTCTTCG
Found at i:7599045 original size:43 final size:43
Alignment explanation
Indices: 7598995--7599078 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
7598985 TGAGGTATAT
* *
7598995 AGCATCCGAGCTCGTTAAGAGGTCTGAGTTCATTATGGATGCA
1 AGCATCCGAGCTCGTTAAGAGGTCCGAGTTCATTATAGATGCA
* *
7599038 AGCATCCGAGCTTGTTGAGAGGTCCGAGTTCATTATAGATG
1 AGCATCCGAGCTCGTTAAGAGGTCCGAGTTCATTATAGATG
7599079 TGTTACATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
AGCATCCGAGCTCGTTAAGAGGTCCGAGTTCATTATAGATGCA
Found at i:7606877 original size:43 final size:43
Alignment explanation
Indices: 7606795--7606878 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
7606785 TAAGGTATAT
* *
7606795 AGCATCCGAGCTCGTTGAGAGGATCGAGATTATTATGGATGTA
1 AGCATCCGAGCTCGTTGAGAGGATCGAGATCATGATGGATGTA
* * *
7606838 AGCATCTGAGCTCGTTGAGAGG-TCTGAGCTCATGGTGGATG
1 AGCATCCGAGCTCGTTGAGAGGATC-GAGATCATGATGGATG
7606879 CGATGTGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 33 0.94
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.27
Consensus pattern (43 bp):
AGCATCCGAGCTCGTTGAGAGGATCGAGATCATGATGGATGTA
Found at i:7612712 original size:14 final size:13
Alignment explanation
Indices: 7612693--7612738 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 13
7612683 ACCCAATACA
7612693 AACCCAAAACCCTT
1 AACCCAAAA-CCTT
7612707 AACCCAAAA-CTT
1 AACCCAAAACCTT
*
7612719 AGCCCAAAACAC-T
1 AACCCAAAAC-CTT
7612732 AACCCAA
1 AACCCAA
7612739 CCCCAAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
12 11 0.39
13 7 0.25
14 10 0.36
ACGTcount: A:0.48, C:0.39, G:0.02, T:0.11
Consensus pattern (13 bp):
AACCCAAAACCTT
Found at i:7613246 original size:3 final size:3
Alignment explanation
Indices: 7613235--7613313 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
7613225 TTTATTTTTT
*
7613235 TTA TT- TTA TTA TT- TTA CTA TTA TT- TATA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
7613277 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA -TA TTA T
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA T
7613314 ATATGTCCTC
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
2 9 0.15
3 44 0.71
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7613291 original size:21 final size:18
Alignment explanation
Indices: 7613239--7613313 Score: 82
Period size: 18 Copynumber: 4.1 Consensus size: 18
7613229 TTTTTTTTAT
*
7613239 TTTATTATT-TTACTATTA
1 TTTA-TATTATTATTATTA
7613257 TTTATATTATTATTATTA
1 TTTATATTATTATTATTA
*
7613275 TTTCTCATGTATATATTATTA
1 TTTAT-AT-TAT-TATTATTA
7613296 TTTATATTATTA-TATTA
1 TTTATATTATTATTATTA
7613313 T
1 T
7613314 ATATGTCCTC
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
17 10 0.20
18 18 0.36
19 5 0.10
20 5 0.10
21 12 0.24
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:7613314 original size:27 final size:24
Alignment explanation
Indices: 7613225--7613317 Score: 71
Period size: 25 Copynumber: 3.7 Consensus size: 24
7613215 AGAGCTTTGT
* * *
7613225 TTTATTTTTTTTATTTTATTATT-
1 TTTATTATTTATATATTATTATTA
7613248 TTACTATTATTTATATTATTATTATTA
1 TT--TATTATTTATA-TATTATTATTA
* * *
7613275 TTTCTCATGTATATATTATTATTTA
1 TTTATTATTTATATATTATTA-TTA
7613300 TATTATTATATTATATAT
1 T-TTATTAT-TTATATAT
7613318 GTCCTCTCCA
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
23 2 0.04
24 8 0.15
25 21 0.39
26 14 0.26
27 9 0.17
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (24 bp):
TTTATTATTTATATATTATTATTA
Found at i:7614681 original size:13 final size:13
Alignment explanation
Indices: 7614663--7614690 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7614653 GAACCTTAAT
7614663 ACCTTCAATTGCA
1 ACCTTCAATTGCA
7614676 ACCTTCAATTGCA
1 ACCTTCAATTGCA
7614689 AC
1 AC
7614691 TTTTTGAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.32, G:0.07, T:0.29
Consensus pattern (13 bp):
ACCTTCAATTGCA
Found at i:7614789 original size:13 final size:13
Alignment explanation
Indices: 7614771--7614795 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7614761 ATGAAGTGTT
7614771 GAAGATCAAGCTG
1 GAAGATCAAGCTG
7614784 GAAGATCAAGCT
1 GAAGATCAAGCT
7614796 ACTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.16
Consensus pattern (13 bp):
GAAGATCAAGCTG
Found at i:7615071 original size:28 final size:28
Alignment explanation
Indices: 7615031--7615096 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
7615021 CTTTCCTAAT
7615031 TGTGCAAGTTGTGATTTGCAAGTTGCAA
1 TGTGCAAGTTGTGATTTGCAAGTTGCAA
*
7615059 TGTGCAAGTTGTGATTTGCAAGTTGTAA
1 TGTGCAAGTTGTGATTTGCAAGTTGCAA
*
7615087 TGTACAAGTT
1 TGTGCAAGTT
7615097 ATGCAAATTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.26, C:0.09, G:0.27, T:0.38
Consensus pattern (28 bp):
TGTGCAAGTTGTGATTTGCAAGTTGCAA
Found at i:7615094 original size:14 final size:14
Alignment explanation
Indices: 7615031--7615096 Score: 78
Period size: 14 Copynumber: 4.7 Consensus size: 14
7615021 CTTTCCTAAT
*
7615031 TGTGCAAGTTGTGA
1 TGTGCAAGTTGTAA
* *
7615045 TTTGCAAGTTGCAA
1 TGTGCAAGTTGTAA
*
7615059 TGTGCAAGTTGTGA
1 TGTGCAAGTTGTAA
*
7615073 TTTGCAAGTTGTAA
1 TGTGCAAGTTGTAA
*
7615087 TGTACAAGTT
1 TGTGCAAGTT
7615097 ATGCAAATTG
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 42 1.00
ACGTcount: A:0.26, C:0.09, G:0.27, T:0.38
Consensus pattern (14 bp):
TGTGCAAGTTGTAA
Found at i:7634090 original size:20 final size:20
Alignment explanation
Indices: 7634062--7634104 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
7634052 GGCTTTGTTA
7634062 TTTTGAAAAATATATA-AAAT
1 TTTTGAAAAATAT-TAGAAAT
*
7634082 TTTTTAAAAATATTAGAAAT
1 TTTTGAAAAATATTAGAAAT
7634102 TTT
1 TTT
7634105 ATCACATACG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
TTTTGAAAAATATTAGAAAT
Found at i:7635105 original size:27 final size:26
Alignment explanation
Indices: 7635075--7635154 Score: 83
Period size: 26 Copynumber: 3.0 Consensus size: 26
7635065 TCTAAGTTCA
7635075 TATATTTTTGAAAATTTTTAAGGTTTT
1 TATATTTTTGAAAATTTTTAA-GTTTT
* * *
7635102 TATATTTTT-ATAAATTTCTAAATTTA
1 TATATTTTTGA-AAATTTTTAAGTTTT
*
7635128 TATATATTTG-AAATATTTTAAGTTTT
1 TATATTTTTGAAAAT-TTTTAAGTTTT
7635154 T
1 T
7635155 CTTTATAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
25 4 0.09
26 21 0.49
27 18 0.42
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.59
Consensus pattern (26 bp):
TATATTTTTGAAAATTTTTAAGTTTT
Found at i:7635140 original size:53 final size:53
Alignment explanation
Indices: 7635045--7635154 Score: 152
Period size: 53 Copynumber: 2.1 Consensus size: 53
7635035 AAATCTCATA
* *
7635045 TTTTATATTTTTATAAATCATCTAAGTTCATATATTTTTGAAA-ATTTTTAAGGT
1 TTTTATATTTTTATAAATCATCTAAATTCATATATATTTGAAATA-TTTTAA-GT
* *
7635099 TTTTATATTTTTATAAAT-TTCTAAATTTATATATATTTGAAATATTTTAAGT
1 TTTTATATTTTTATAAATCATCTAAATTCATATATATTTGAAATATTTTAAGT
7635151 TTTT
1 TTTT
7635155 CTTTATAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
52 6 0.12
53 26 0.51
54 19 0.37
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (53 bp):
TTTTATATTTTTATAAATCATCTAAATTCATATATATTTGAAATATTTTAAGT
Found at i:7651899 original size:21 final size:21
Alignment explanation
Indices: 7651867--7651907 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7651857 GAACATTTGG
7651867 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
7651888 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
7651908 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:7654526 original size:20 final size:20
Alignment explanation
Indices: 7654501--7654540 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7654491 TAAGTGTGAG
7654501 AAATTAACTTTGTTTTGCTT
1 AAATTAACTTTGTTTTGCTT
7654521 AAATTAACTTTGTTTTGCTT
1 AAATTAACTTTGTTTTGCTT
7654541 TTTATGTGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.55
Consensus pattern (20 bp):
AAATTAACTTTGTTTTGCTT
Found at i:7659407 original size:26 final size:27
Alignment explanation
Indices: 7659346--7659407 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 27
7659336 ACCTTGGGCC
* * *
7659346 GTTTTATTTTGTGTTTTTTTGCTTTCG
1 GTTTGATTTTGTGTTTCTCTGCTTTCG
* *
7659373 GTTTG-TTTTGTGTTTCTCTGTTTTTG
1 GTTTGATTTTGTGTTTCTCTGCTTTCG
7659399 G-TTGATTTT
1 GTTTGATTTT
7659408 TCTGGTAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 3 0.10
26 22 0.76
27 4 0.14
ACGTcount: A:0.03, C:0.06, G:0.21, T:0.69
Consensus pattern (27 bp):
GTTTGATTTTGTGTTTCTCTGCTTTCG
Found at i:7662415 original size:46 final size:45
Alignment explanation
Indices: 7662365--7662585 Score: 280
Period size: 46 Copynumber: 4.8 Consensus size: 45
7662355 TTTCTGAAAT
*
7662365 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
* * * *
7662410 TGAAATGTGTAAGACCATGGATGAAAGATACCATGGCAACATAATGG
1 -GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT-A
* * *
7662457 GAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACATGACGA
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-TA
* *
7662503 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
** * *
7662548 GAAAATGAGTAAGACCACAGTTGAAAGACACTATGGCA
1 G-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
7662586 TTATGTTGAA
Statistics
Matches: 155, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
45 2 0.01
46 153 0.99
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (45 bp):
GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
Found at i:7663481 original size:29 final size:31
Alignment explanation
Indices: 7663424--7663481 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
7663414 ATTATCACAA
*
7663424 AATATAAAATATTATATTTTTTTATATAATT
1 AATATAAAATATTATAATTTTTTATATAATT
7663455 AATA-AAACATATT-TAATTTTTT-TATAA
1 AATATAAA-ATATTATAATTTTTTATATAA
7663482 AAACGTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 5 0.20
30 11 0.44
31 9 0.36
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (31 bp):
AATATAAAATATTATAATTTTTTATATAATT
Found at i:7663529 original size:38 final size:38
Alignment explanation
Indices: 7663487--7663561 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
7663477 TATAAAAACG
*
7663487 TATTAAAATT-CTATAAAAATTATAAAAAATAAAAAAAA
1 TATTAAAATTGATAT-AAAATTATAAAAAATAAAAAAAA
* * *
7663525 TATTAAAATTGATATAAATTTATAAAAATTATAAAAA
1 TATTAAAATTGATATAAAATTATAAAAAATAAAAAAA
7663562 TTAAATAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 29 0.91
39 3 0.09
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (38 bp):
TATTAAAATTGATATAAAATTATAAAAAATAAAAAAAA
Found at i:7663572 original size:9 final size:9
Alignment explanation
Indices: 7663498--7663564 Score: 71
Period size: 9 Copynumber: 7.2 Consensus size: 9
7663488 ATTAAAATTC
7663498 TATAAAAAT
1 TATAAAAAT
*
7663507 TATAAAAAA
1 TATAAAAAT
* *
7663516 TAAAAAAAA
1 TATAAAAAT
*
7663525 TATTAAAAT
1 TATAAAAAT
*
7663534 TGATATAAATT
1 T-ATA-AAAAT
7663545 TATAAAAAT
1 TATAAAAAT
7663554 TATAAAAAT
1 TATAAAAAT
7663563 TA
1 TA
7663565 AATAAATTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
9 38 0.79
10 5 0.10
11 5 0.10
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (9 bp):
TATAAAAAT
Found at i:7670865 original size:53 final size:53
Alignment explanation
Indices: 7670785--7670891 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
7670775 ACTAAATAAG
*
7670785 TTAGTTATAGTTTTTTGCTTTACTTTTCATGTCTGAGATTTGGTATAGATATA
1 TTAGTTATAGTCTTTTGCTTTACTTTTCATGTCTGAGATTTGGTATAGATATA
7670838 TTAGTTATAGTCTTTTGCTTTACTTTTCATGTCTGAGATTTGGTATAGATATA
1 TTAGTTATAGTCTTTTGCTTTACTTTTCATGTCTGAGATTTGGTATAGATATA
7670891 T
1 T
7670892 ATCACGTATA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.22, C:0.08, G:0.17, T:0.52
Consensus pattern (53 bp):
TTAGTTATAGTCTTTTGCTTTACTTTTCATGTCTGAGATTTGGTATAGATATA
Found at i:7683756 original size:28 final size:26
Alignment explanation
Indices: 7683715--7683777 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 26
7683705 AAAATACTCT
* * *
7683715 TTTCAATATTCAGTATAGTTTTCTTTC
1 TTTCAATTTTCAGTATA-ATTTCATTC
7683742 TATTCAATTTTCAGTATAATTTCATTC
1 T-TTCAATTTTCAGTATAATTTCATTC
7683769 TTTCAATTT
1 TTTCAATTT
7683778 ACAACAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.25
27 9 0.28
28 15 0.47
ACGTcount: A:0.25, C:0.14, G:0.05, T:0.56
Consensus pattern (26 bp):
TTTCAATTTTCAGTATAATTTCATTC
Done.