Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 260 of 311
Found at i:86485795 original size:16 final size:16
Alignment explanation
Indices: 86485774--86485816 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
86485764 TAGGTTGTTA
*
86485774 CAATTACAGCTCTATT
1 CAATTACAGCCCTATT
*
86485790 CAATTACAACCCTATT
1 CAATTACAGCCCTATT
*
86485806 CCATTACAGCC
1 CAATTACAGCC
86485817 AACCAAACGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.30
Consensus pattern (16 bp):
CAATTACAGCCCTATT
Found at i:86486023 original size:16 final size:16
Alignment explanation
Indices: 86485971--86486041 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
86485961 GTTTGGTTCA
* *
86485971 CTGTAATAGAATAGGG
1 CTGTAATGGAATAGAG
* * *
86485987 CTATAATTGAATAGGG
1 CTGTAATGGAATAGAG
86486003 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
86486019 TTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
86486035 CTGTAAT
1 CTGTAAT
86486042 CAGTAATTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.37, C:0.06, G:0.28, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:86486116 original size:39 final size:40
Alignment explanation
Indices: 86486018--86486131 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 40
86486008 ATGGAATAGA
86486018 GTTGTAATGGAATAGAGCTGTAATCAGTAATTCAATTGTTTG
1 GTTG-AATGGAATAGAGCTGTAAT-AGTAATTCAATTGTTTG
*
86486060 GTTGAATGAAATTGAATAGAGCTGTAATAG-AATTC-TTGTGTTTG
1 GTTGAATG-----GAATAGAGCTGTAATAGTAATTCAAT-TGTTTG
*
86486104 GTTGAATGGAATAGATGTTGTAATAGTA
1 GTTGAATGGAATAGA-GCTGTAATAGTA
86486132 TAAGGAAAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 17
0.77 0.02 0.21
Matches are distributed among these distances:
39 7 0.11
40 9 0.15
41 5 0.08
42 4 0.06
43 1 0.02
44 19 0.31
45 2 0.03
46 15 0.24
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.38
Consensus pattern (40 bp):
GTTGAATGGAATAGAGCTGTAATAGTAATTCAATTGTTTG
Found at i:86486827 original size:16 final size:16
Alignment explanation
Indices: 86486806--86486862 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
86486796 ATGGAATTAT
86486806 AAATTAATATATGATA
1 AAATTAATATATGATA
*
86486822 AAATTACAT-TTTGATCTCA
1 AAATTA-ATATATGA--T-A
*
86486841 AAATTAATATATGGTA
1 AAATTAATATATGATA
86486857 AAATTA
1 AAATTA
86486863 CATCTATTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
16 17 0.52
17 3 0.09
18 3 0.09
19 10 0.30
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (16 bp):
AAATTAATATATGATA
Found at i:86492493 original size:16 final size:16
Alignment explanation
Indices: 86492472--86492606 Score: 101
Period size: 16 Copynumber: 7.7 Consensus size: 16
86492462 AATTACACCA
86492472 GCACAAAGCCTACTAG
1 GCACAAAGCCTACTAG
86492488 GCACAAAGCCCGAATA-TCACTG
1 GCACAAAG-CC---TACT-A--G
*
86492510 GCACAAAGCTTACTAG
1 GCACAAAGCCTACTAG
*
86492526 GCACAAAGCCTGCTAG
1 GCACAAAGCCTACTAG
*
86492542 GCACAAAGCCTGAATATCATTG
1 GCACAAAGCC----TA-C-TAG
*
86492564 GCACAAAGCTTACTAG
1 GCACAAAGCCTACTAG
*
86492580 GCACAAAGCCTGCTAG
1 GCACAAAGCCTACTAG
86492596 GCACAAAGCCT
1 GCACAAAGCCT
86492607 GAATATCACT
Statistics
Matches: 96, Mismatches: 9, Indels: 28
0.72 0.07 0.21
Matches are distributed among these distances:
16 60 0.62
17 3 0.03
18 5 0.05
19 2 0.02
20 4 0.04
21 2 0.02
22 20 0.21
ACGTcount: A:0.36, C:0.29, G:0.20, T:0.16
Consensus pattern (16 bp):
GCACAAAGCCTACTAG
Found at i:86492533 original size:54 final size:54
Alignment explanation
Indices: 86492472--86492626 Score: 274
Period size: 54 Copynumber: 2.9 Consensus size: 54
86492462 AATTACACCA
* *
86492472 GCACAAAGCCTACTAGGCACAAAGCCCGAATATCACTGGCACAAAGCTTACTAG
1 GCACAAAGCCTGCTAGGCACAAAGCCTGAATATCACTGGCACAAAGCTTACTAG
*
86492526 GCACAAAGCCTGCTAGGCACAAAGCCTGAATATCATTGGCACAAAGCTTACTAG
1 GCACAAAGCCTGCTAGGCACAAAGCCTGAATATCACTGGCACAAAGCTTACTAG
*
86492580 GCACAAAGCCTGCTAGGCACAAAGCCTGAATATCACTAGCACAAAGC
1 GCACAAAGCCTGCTAGGCACAAAGCCTGAATATCACTGGCACAAAGC
86492627 CCCAACTAAT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 96 1.00
ACGTcount: A:0.37, C:0.28, G:0.19, T:0.15
Consensus pattern (54 bp):
GCACAAAGCCTGCTAGGCACAAAGCCTGAATATCACTGGCACAAAGCTTACTAG
Found at i:86494199 original size:16 final size:16
Alignment explanation
Indices: 86494170--86494210 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
86494160 AGAATTAGTT
* *
86494170 ATATTAATATTATTTA
1 ATATTAAAAATATTTA
*
86494186 ATTTTAAAAATATTTA
1 ATATTAAAAATATTTA
86494202 ATATTAAAA
1 ATATTAAAA
86494211 TAATACAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATTAAAAATATTTA
Found at i:86495137 original size:13 final size:13
Alignment explanation
Indices: 86495119--86495145 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86495109 AGAGTAATCG
86495119 CACACGGGTGTGT
1 CACACGGGTGTGT
86495132 CACACGGGTGTGT
1 CACACGGGTGTGT
86495145 C
1 C
86495146 CCTGTTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CACACGGGTGTGT
Found at i:86498176 original size:51 final size:51
Alignment explanation
Indices: 86498100--86498230 Score: 208
Period size: 51 Copynumber: 2.6 Consensus size: 51
86498090 CGGATCACAT
* *
86498100 TTATCACTTATTACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
86498151 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAGGCTACCAC
1 TTATCACTTGTCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCAC
*
86498202 TTATCACTTGTCATTTGTCATTGATCAGA
1 TTATCACTTGTCACTTGTCATTGATCAGA
86498231 AGTATTCAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 73 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:86500860 original size:18 final size:18
Alignment explanation
Indices: 86500815--86500920 Score: 97
Period size: 18 Copynumber: 5.9 Consensus size: 18
86500805 ACTCTTTAAT
*
86500815 AGTCAGTTATTTAGTAAC
1 AGTCAGTTATTCAGTAAC
* *
86500833 -GATAAATTATTCAGTAAC
1 AG-TCAGTTATTCAGTAAC
* * * *
86500851 AGACACTTATTTAGTAGC
1 AGTCAGTTATTCAGTAAC
*
86500869 AGTCAGTTATCCAGTAAC
1 AGTCAGTTATTCAGTAAC
* * *
86500887 AGTCAGTTTTTCAATAGC
1 AGTCAGTTATTCAGTAAC
86500905 AGTCAGTTATTCAGTA
1 AGTCAGTTATTCAGTA
86500921 CCTTTATTTA
Statistics
Matches: 67, Mismatches: 19, Indels: 4
0.74 0.21 0.04
Matches are distributed among these distances:
17 1 0.01
18 65 0.97
19 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (18 bp):
AGTCAGTTATTCAGTAAC
Found at i:86500884 original size:36 final size:36
Alignment explanation
Indices: 86500839--86500920 Score: 112
Period size: 36 Copynumber: 2.3 Consensus size: 36
86500829 TAACGATAAA
*
86500839 TTATTCAGTAACAGACACTTATTT-AGTAGCAGTCAG
1 TTATTCAGTAACAGACACTT-TTTCAATAGCAGTCAG
* * *
86500875 TTATCCAGTAACAGTCAGTTTTTCAATAGCAGTCAG
1 TTATTCAGTAACAGACACTTTTTCAATAGCAGTCAG
86500911 TTATTCAGTA
1 TTATTCAGTA
86500921 CCTTTATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 3 0.08
36 37 0.93
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (36 bp):
TTATTCAGTAACAGACACTTTTTCAATAGCAGTCAG
Found at i:86502194 original size:19 final size:19
Alignment explanation
Indices: 86502172--86502221 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
86502162 CAAATCCTAA
86502172 TTCTCCCTT-TTTCTTTTCT
1 TTCTCCCTTCTTTC-TTTCT
*
86502191 TTCTCCTTTCTTTCTTTCT
1 TTCTCCCTTCTTTCTTTCT
*
86502210 TTC-CCCTGCTTT
1 TTCTCCCTTCTTT
86502222 TCGTTTGCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 7 0.26
19 16 0.59
20 4 0.15
ACGTcount: A:0.00, C:0.34, G:0.02, T:0.64
Consensus pattern (19 bp):
TTCTCCCTTCTTTCTTTCT
Found at i:86502276 original size:18 final size:18
Alignment explanation
Indices: 86502238--86502276 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
86502228 GCCTATTCTG
*
86502238 TTTCTTTTCTTTGTTTCA
1 TTTCTTTTCTTTCTTTCA
86502256 TTTCTTTTTCTTTCTTT-A
1 TTTC-TTTTCTTTCTTTCA
86502274 TTT
1 TTT
86502277 ACTATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTCTTTTCTTTCTTTCA
Found at i:86502464 original size:16 final size:16
Alignment explanation
Indices: 86502440--86502471 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
86502430 TTTAACTTAT
*
86502440 TTATCATATAAATATA
1 TTATAATATAAATATA
86502456 TTATAATATAAATATA
1 TTATAATATAAATATA
86502472 ATAAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
TTATAATATAAATATA
Found at i:86503660 original size:90 final size:90
Alignment explanation
Indices: 86503501--86503677 Score: 266
Period size: 90 Copynumber: 2.0 Consensus size: 90
86503491 CGTGTGCTAA
* * * *
86503501 GCCGTGTGGTTAATTAAAATTTTCAAAATTAGGTGCAGGTTTCACATGGCCAAGACACACGCCCT
1 GCCGTATGGTTAATTAAAATTTTCAAAATTAGGTGCAGCTTTCACAAGGCCAAGACACACGCCCG
86503566 TGTTCCA-TATAGTGTAGCACACTAG
66 TGTTCCAGT-TAGTGTAGCACACTAG
* * * *
86503591 GCCGTATGGTTAATTGAATTTTTCGAAATTAGGTGCAGCTTTCACAAGGCCAAGACACATGCCCG
1 GCCGTATGGTTAATTAAAATTTTCAAAATTAGGTGCAGCTTTCACAAGGCCAAGACACACGCCCG
86503656 TGTTCCAGTTAGTGTAGCACAC
66 TGTTCCAGTTAGTGTAGCACAC
86503678 ACGGCTGAGA
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
90 77 0.99
91 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (90 bp):
GCCGTATGGTTAATTAAAATTTTCAAAATTAGGTGCAGCTTTCACAAGGCCAAGACACACGCCCG
TGTTCCAGTTAGTGTAGCACACTAG
Found at i:86504787 original size:57 final size:58
Alignment explanation
Indices: 86504698--86504837 Score: 203
Period size: 57 Copynumber: 2.4 Consensus size: 58
86504688 AACATATAAC
** * *
86504698 AGGATTACCAGTCCAGGCTAAATCCTTTTTGTAATATATGCTC-AGAAGAGCTCA-ATT
1 AGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCTAG-AGAGATCATATT
* *
86504755 AGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCTAGAGGGATTATATT
1 AGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCTAGAGAGATCATATT
86504813 AGGATTACCAGTCCAGGCTAAATCC
1 AGGATTACCAGTCCAGGCTAAATCC
86504838 CGTCAGCAAC
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
57 45 0.60
58 30 0.40
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (58 bp):
AGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCTAGAGAGATCATATT
Found at i:86506507 original size:12 final size:12
Alignment explanation
Indices: 86506490--86506520 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
86506480 TGGAAGAAAA
86506490 TAAGCCATTTTC
1 TAAGCCATTTTC
86506502 TAAGCCATTTTC
1 TAAGCCATTTTC
*
86506514 CAAGCCA
1 TAAGCCA
86506521 CATTTCTCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (12 bp):
TAAGCCATTTTC
Found at i:86507343 original size:21 final size:21
Alignment explanation
Indices: 86507295--86507449 Score: 170
Period size: 21 Copynumber: 7.3 Consensus size: 21
86507285 CGAATACGCC
*
86507295 AACAGAAGCTCG-AA-AGTTG
1 AACAGAAGCTCGTAAGAGCTG
* *
86507314 AACAAAAGCTCGTAAGAGCTA
1 AACAGAAGCTCGTAAGAGCTG
* *
86507335 AACAGAAGCTCGTAAAAGCTA
1 AACAGAAGCTCGTAAGAGCTG
* * *
86507356 AACAAAAACTCATAATAAGAGCTG
1 AACAGAAGCTC---GTAAGAGCTG
*
86507380 AACAGAAGCTCGTAAGAGTTG
1 AACAGAAGCTCGTAAGAGCTG
*
86507401 AACAGAAGGTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
*
86507422 AACAGAAGCTCGTAAGAGCTA
1 AACAGAAGCTCGTAAGAGCTG
86507443 AACAGAA
1 AACAGAA
86507450 AGTAAAACAC
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
19 11 0.10
20 2 0.02
21 84 0.74
24 16 0.14
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:86511869 original size:16 final size:16
Alignment explanation
Indices: 86511848--86511878 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86511838 TTTATTATTT
86511848 TATTAACATAATATAA
1 TATTAACATAATATAA
*
86511864 TATTAATATAATATA
1 TATTAACATAATATA
86511879 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:86514665 original size:22 final size:24
Alignment explanation
Indices: 86514629--86514686 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
86514619 TTTTAATTTT
86514629 AATAATATATTAAAAG-AATATAA
1 AATAATATATTAAAAGAAATATAA
*
86514652 AATAAT-TTTTAAAAGATAATATAA
1 AATAATATATTAAAAGA-AATATAA
*
86514676 AATTATATATT
1 AATAATATATT
86514687 TTCATTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 8 0.28
23 6 0.21
24 12 0.41
25 3 0.10
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (24 bp):
AATAATATATTAAAAGAAATATAA
Found at i:86518777 original size:20 final size:20
Alignment explanation
Indices: 86518715--86518787 Score: 91
Period size: 20 Copynumber: 3.8 Consensus size: 20
86518705 GTTTAGGGTA
86518715 TTAGGGTTAATTGATTAAA-
1 TTAGGGTTAATTGATTAAAT
*
86518734 TTAGGG---ATTGATTTAGAGT
1 TTAGGGTTAATTGA-TTA-AAT
86518753 TTAGGGTTAATTGATTAAAT
1 TTAGGGTTAATTGATTAAAT
86518773 TTAGGGTTAATTGAT
1 TTAGGGTTAATTGAT
86518788 ACATAATGGT
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
16 5 0.11
17 3 0.07
18 1 0.02
19 12 0.26
20 17 0.37
21 3 0.07
22 5 0.11
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.44
Consensus pattern (20 bp):
TTAGGGTTAATTGATTAAAT
Found at i:86519557 original size:126 final size:125
Alignment explanation
Indices: 86519327--86519708 Score: 496
Period size: 126 Copynumber: 3.0 Consensus size: 125
86519317 TTTCTGCAAG
* * *
86519327 AATAATTCTGAGCAGACGTTTTTGAACAAATAGTGTCCAAAAACGCTTCAAGTAGGATGCACTGT
1 AATAATTCTGAGTAGACGTTTTTGAACAAATAGTGT-CAAAAACGCTTCAAGCAGGATGCATTGT
* * * * *
86519392 CAGCAAAATTTTTGGAAAAATCTCCCACATAGACGCTCTTTTACTACAGTAGTTCGTAGAAA
65 CAGCAAAA-TTTTGGAAAAAACTTCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * * *
86519454 AATAATTCTAAGTAGACATTTCTGAACAAATAGTATCGAAAACGCTTCAAGCAGGATGCATTGTC
1 AATAATTCTGAGTAGACGTTTTTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTC
** * * **
86519519 AATAAAATTTCTGGAAAAAGCTTCCACGTGGACACTCTTTTGCTTTAGTAGTTCGTAGAAA
66 AGCAAAATTT-TGGAAAAAACTTCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
86519580 AATAATTCTGAGTAGACGTTTTTGAATAAATAGTGTCAAAAATGCTTCAAGCAGGATGCATTGTC
1 AATAATTCTGAGTAGACGTTTTTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTC
* * *
86519645 AGCAAAATTTTAGAAAAAAAC-TCTCACGTGGACGCTCTTTTGCTACAGTAGTTTGTAGTAA
66 AGCAAAATTTT-GGAAAAAACTTC-CACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
86519706 AAT
1 AAT
86519709 GAGGCTAGAA
Statistics
Matches: 218, Mismatches: 34, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
125 6 0.03
126 181 0.83
127 31 0.14
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (125 bp):
AATAATTCTGAGTAGACGTTTTTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTC
AGCAAAATTTTGGAAAAAACTTCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:86521943 original size:43 final size:43
Alignment explanation
Indices: 86521894--86521975 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
86521884 TAATGACCGT
*
86521894 TTTCATGAGATGTTGGCAGTTTTGCGTTTGGTTAACGAAAAAG
1 TTTCATGAGATGTTGGCAGTTTTGCGTTCGGTTAACGAAAAAG
*
86521937 TTTCATGAGATGTTGGCGGTTTTGCGTTCGGTTAACGAA
1 TTTCATGAGATGTTGGCAGTTTTGCGTTCGGTTAACGAA
86521976 GAAGGTGCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.22, C:0.11, G:0.29, T:0.38
Consensus pattern (43 bp):
TTTCATGAGATGTTGGCAGTTTTGCGTTCGGTTAACGAAAAAG
Found at i:86523001 original size:21 final size:21
Alignment explanation
Indices: 86522963--86523002 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
86522953 TCGATCAGCT
* * *
86522963 TCTGGCGGGGGTTGTGGTTCA
1 TCTGGCAGGGGATCTGGTTCA
86522984 TCTGGCAGGGGATCTGGTT
1 TCTGGCAGGGGATCTGGTT
86523003 GTGGGTGTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.15, G:0.45, T:0.33
Consensus pattern (21 bp):
TCTGGCAGGGGATCTGGTTCA
Found at i:86523270 original size:18 final size:18
Alignment explanation
Indices: 86523244--86523285 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
86523234 GACTAGGAAA
* *
86523244 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
86523262 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
86523280 AGGATA
1 AGGATA
86523286 TGCACCTGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.43, C:0.07, G:0.29, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:86524949 original size:48 final size:48
Alignment explanation
Indices: 86524881--86525016 Score: 150
Period size: 48 Copynumber: 2.8 Consensus size: 48
86524871 ATGCAAACAT
*
86524881 CATAAATGAAAAAAAAATCAAGCAATATTG-AAATTGTAATTATAA-TTG
1 CATAAATGAAAAAAAAATCAAACAATATTGAAAATT-TAATTA-AATTTG
* * * *
86524929 CATAAATGAATAAAATATCAAATAGTATTGAAAATTTAATTAAATTTG
1 CATAAATGAAAAAAAAATCAAACAATATTGAAAATTTAATTAAATTTG
* * * *
86524977 CATAAATTAAAAAAAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAAAAAA-ATCAAACAATATTGAAAATTTAA
86525017 AATTATCACT
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
47 2 0.03
48 47 0.62
49 27 0.36
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32
Consensus pattern (48 bp):
CATAAATGAAAAAAAAATCAAACAATATTGAAAATTTAATTAAATTTG
Found at i:86525002 original size:49 final size:48
Alignment explanation
Indices: 86524881--86525016 Score: 154
Period size: 49 Copynumber: 2.8 Consensus size: 48
86524871 ATGCAAACAT
* * *
86524881 CATAAATGAAAAAAAA-ATCAAGCAATATTG-AAATTGTAATTATAATTG
1 CATAAATTAAAAAAAATATCAA-TAGTATTGAAAATT-TAATTATAATTG
* *
86524929 CATAAA-TGAATAAAATATCAAATAGTATTGAAAATTTAATTA-AATTTG
1 CATAAATTAAAAAAAATATC-AATAGTATTGAAAATTTAATTATAA-TTG
86524977 CATAAATTAAAAAAAATATCGAATAGTATTGAAAATTTAA
1 CATAAATTAAAAAAAATATC-AATAGTATTGAAAATTTAA
86525017 AATTATCACT
Statistics
Matches: 75, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
47 8 0.11
48 30 0.40
49 37 0.49
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32
Consensus pattern (48 bp):
CATAAATTAAAAAAAATATCAATAGTATTGAAAATTTAATTATAATTG
Found at i:86525163 original size:11 final size:11
Alignment explanation
Indices: 86525149--86525191 Score: 77
Period size: 11 Copynumber: 3.9 Consensus size: 11
86525139 ATTTAAACAA
86525149 AGAAATTTGAT
1 AGAAATTTGAT
*
86525160 AGAATTTTGAT
1 AGAAATTTGAT
86525171 AGAAATTTGAT
1 AGAAATTTGAT
86525182 AGAAATTTGA
1 AGAAATTTGA
86525192 GAAATTTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.37
Consensus pattern (11 bp):
AGAAATTTGAT
Found at i:86525177 original size:22 final size:20
Alignment explanation
Indices: 86525149--86525198 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 20
86525139 ATTTAAACAA
*
86525149 AGAAATTTGATAGAATTTTG
1 AGAAATTTGATAGAAATTTG
86525169 ATAGAAATTTGATAGAAATTTG
1 --AGAAATTTGATAGAAATTTG
86525191 AGAAATTT
1 AGAAATTT
86525199 TCAATGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 8 0.30
22 19 0.70
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (20 bp):
AGAAATTTGATAGAAATTTG
Found at i:86525196 original size:9 final size:10
Alignment explanation
Indices: 86525148--86525212 Score: 60
Period size: 11 Copynumber: 6.1 Consensus size: 10
86525138 AATTTAAACA
86525148 AAGAAATTTG
1 AAGAAATTTG
*
86525158 ATAGAATTTTG
1 A-AGAAATTTG
86525169 ATAGAAATTTG
1 A-AGAAATTTG
86525180 ATAGAAATTTG
1 A-AGAAATTTG
*
86525191 -AGAAATTTTC
1 AAGAAA-TTTG
86525201 AATGAAATTTG
1 AA-GAAATTTG
86525212 A
1 A
86525213 TATATTTTTG
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
9 5 0.11
10 4 0.09
11 34 0.72
12 4 0.09
ACGTcount: A:0.45, C:0.02, G:0.17, T:0.37
Consensus pattern (10 bp):
AAGAAATTTG
Found at i:86525208 original size:32 final size:33
Alignment explanation
Indices: 86525149--86525214 Score: 91
Period size: 32 Copynumber: 2.0 Consensus size: 33
86525139 ATTTAAACAA
* *
86525149 AGAAATTTGATAGAATTTTGATAGAAATTTGAT
1 AGAAATTTGAGAGAATTTTAATAGAAATTTGAT
86525182 AGAAATTTGAGA-AATTTTCAAT-GAAATTTGAT
1 AGAAATTTGAGAGAATTTT-AATAGAAATTTGAT
86525214 A
1 A
86525215 TATTTTTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.44, C:0.02, G:0.17, T:0.38
Consensus pattern (33 bp):
AGAAATTTGAGAGAATTTTAATAGAAATTTGAT
Found at i:86527260 original size:18 final size:18
Alignment explanation
Indices: 86527237--86527280 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
86527227 AATCAAGCAT
86527237 ATTAAAACCATTTTACAC
1 ATTAAAACCATTTTACAC
*
86527255 ATTAAAACCATTTTACAT
1 ATTAAAACCATTTTACAC
86527273 ATTAAAAC
1 ATTAAAAC
86527281 ATACCATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (18 bp):
ATTAAAACCATTTTACAC
Found at i:86527999 original size:25 final size:25
Alignment explanation
Indices: 86527926--86528000 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 25
86527916 TTCCAAGCCA
* **
86527926 AATAACAGAAAGCTCATGTGAGCTT
1 AATAACAGGAAGCTCATAAGAGCTT
* * * ** *
86527951 -GTAACGGGAAGCTTATTCGGGCTT
1 AATAACAGGAAGCTCATAAGAGCTT
86527975 AATAACAGGAAGCTCATAAGAGCTT
1 AATAACAGGAAGCTCATAAGAGCTT
86528000 A
1 A
86528001 TCAGAAAGCT
Statistics
Matches: 36, Mismatches: 13, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
24 17 0.47
25 19 0.53
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (25 bp):
AATAACAGGAAGCTCATAAGAGCTT
Found at i:86528239 original size:24 final size:24
Alignment explanation
Indices: 86528203--86528248 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
86528193 AAGAACCATG
86528203 TATCGGAAAGCTCAAGAGAGCTTA
1 TATCGGAAAGCTCAAGAGAGCTTA
* * *
86528227 TATCGGGATGCTCAAGTGAGCT
1 TATCGGAAAGCTCAAGAGAGCT
86528249 ATAACAGGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (24 bp):
TATCGGAAAGCTCAAGAGAGCTTA
Found at i:86532669 original size:17 final size:17
Alignment explanation
Indices: 86532647--86532682 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
86532637 AGTTTCATTA
* *
86532647 AATTTGTTAAAAAAGAT
1 AATTTGATAAAAAAAAT
86532664 AATTTGATAAAAAAAAT
1 AATTTGATAAAAAAAAT
86532681 AA
1 AA
86532683 AGATTAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (17 bp):
AATTTGATAAAAAAAAT
Found at i:86541835 original size:3 final size:3
Alignment explanation
Indices: 86541829--86541854 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
86541819 ACCACTCCCT
86541829 CCG CCG CCG CCG CCG CCG CCG CCG CC
1 CCG CCG CCG CCG CCG CCG CCG CCG CC
86541855 TCCATCCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.69, G:0.31, T:0.00
Consensus pattern (3 bp):
CCG
Found at i:86543200 original size:5 final size:5
Alignment explanation
Indices: 86543190--86543214 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
86543180 TCAGAGCGGA
86543190 TGCAT TGCAT TGCAT TGCAT TGCAT
1 TGCAT TGCAT TGCAT TGCAT TGCAT
86543215 AGCAATGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (5 bp):
TGCAT
Found at i:86544543 original size:14 final size:13
Alignment explanation
Indices: 86544518--86544553 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
86544508 TTTTTATGGA
86544518 TATTTTAATTATT
1 TATTTTAATTATT
86544531 TATTTTAAATTATT
1 TATTTT-AATTATT
*
86544545 TATTATAAT
1 TATTTTAAT
86544554 AAATCACTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTAATTATT
Found at i:86544557 original size:17 final size:14
Alignment explanation
Indices: 86544518--86544548 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
86544508 TTTTTATGGA
86544518 TATTTT-AATTATT
1 TATTTTAAATTATT
86544531 TATTTTAAATTATT
1 TATTTTAAATTATT
86544545 TATT
1 TATT
86544549 ATAATAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTTTAAATTATT
Found at i:86549815 original size:18 final size:18
Alignment explanation
Indices: 86549787--86549821 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
86549777 GACCCATGTT
86549787 TGAATTTTTGA-TTTTGG
1 TGAATTTTTGAGTTTTGG
86549804 TGAATATTTTGAGTTTTG
1 TGAAT-TTTTGAGTTTTG
86549822 CCATTGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 6 0.38
19 5 0.31
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (18 bp):
TGAATTTTTGAGTTTTGG
Found at i:86550474 original size:39 final size:42
Alignment explanation
Indices: 86550431--86550515 Score: 104
Period size: 42 Copynumber: 2.1 Consensus size: 42
86550421 ATAAGAATAA
*
86550431 CTTTG-TAACAGTG-AT-ATATCAAGCTTATTGCCTAGCAGG
1 CTTTGATAACAGTGTATGATATCAAGATTATTGCCTAGCAGG
** * *
86550470 CTTTGATGCCGGTGTATGATATCAGGATTATTGCCTAGCAGG
1 CTTTGATAACAGTGTATGATATCAAGATTATTGCCTAGCAGG
86550512 CTTT
1 CTTT
86550516 ATGCCGATGT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
39 5 0.13
40 5 0.13
41 2 0.05
42 26 0.68
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (42 bp):
CTTTGATAACAGTGTATGATATCAAGATTATTGCCTAGCAGG
Found at i:86550493 original size:42 final size:43
Alignment explanation
Indices: 86550446--86550566 Score: 151
Period size: 41 Copynumber: 2.9 Consensus size: 43
86550436 TAACAGTGAT
* *
86550446 ATATCAAGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TG
1 ATATCAGGATTATTGCCTAGCAGGCTTTGATGCCGGTGTATTG
*
86550488 ATATCAGGATTATTGCCTAGCAGGCTTT-ATGCCGATGTATTG
1 ATATCAGGATTATTGCCTAGCAGGCTTTGATGCCGGTGTATTG
* * * *
86550530 A-ATCAGGTTTATTACCTAGCACGCTCTG-TGCCGGTGT
1 ATATCAGGATTATTGCCTAGCAGGCTTTGATGCCGGTGT
86550567 TTTATACAAG
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
41 40 0.58
42 29 0.42
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (43 bp):
ATATCAGGATTATTGCCTAGCAGGCTTTGATGCCGGTGTATTG
Found at i:86550535 original size:41 final size:42
Alignment explanation
Indices: 86550446--86550550 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 42
86550436 TAACAGTGAT
* * *
86550446 ATATCAAGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
1 ATATCAGGATTATTGCCTAGCAGGCTTTGATGCCGATGTATG
86550488 ATATCAGGATTATTGCCTAGCAGGCTTT-ATGCCGATGTATTG
1 ATATCAGGATTATTGCCTAGCAGGCTTTGATGCCGATGTA-TG
* *
86550530 A-ATCAGGTTTATTACCTAGCA
1 ATATCAGGATTATTGCCTAGCA
86550551 CGCTCTGTGC
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
41 28 0.49
42 29 0.51
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (42 bp):
ATATCAGGATTATTGCCTAGCAGGCTTTGATGCCGATGTATG
Found at i:86552623 original size:20 final size:21
Alignment explanation
Indices: 86552600--86552639 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
86552590 TCTCCCTCTC
86552600 TTTTTCTTTCCTTCC-CTTTT
1 TTTTTCTTTCCTTCCTCTTTT
*
86552620 TTTTTCTTTCTTTCCTCTTT
1 TTTTTCTTTCCTTCCTCTTT
86552640 CTTTCCCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTTCTTTCCTTCCTCTTTT
Found at i:86552969 original size:3 final size:3
Alignment explanation
Indices: 86552947--86553029 Score: 51
Period size: 3 Copynumber: 26.7 Consensus size: 3
86552937 ATTTATTTAT
* * * * *
86552947 TTA TTA TTCT TTA TTT TTA TTA TTA CTA TTA CTA TTCA TTA -TA TTTG
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA -TTA
* * *
86552994 TTA TTAA GTA TTA TTA TTA TAA TTA TGA TTA TTA TT
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
86553030 CCTTTATTAC
Statistics
Matches: 59, Mismatches: 16, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
2 2 0.03
3 49 0.83
4 8 0.14
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:86552976 original size:22 final size:22
Alignment explanation
Indices: 86552934--86552976 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
86552924 CCCTTTTATA
*
86552934 TTTATTTATTTATTTATTATTC
1 TTTATTTATTTATTTACTATTC
*
86552956 TTTATTTTTATTA-TTACTATT
1 TTTATTTAT-TTATTTACTATT
86552977 ACTATTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTATTTATTTATTTACTATTC
Found at i:86555667 original size:5 final size:5
Alignment explanation
Indices: 86555654--86555687 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
86555644 AAAAAAACGA
*
86555654 AAAAC AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
86555688 TATTTATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:86556574 original size:30 final size:30
Alignment explanation
Indices: 86556534--86556591 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
86556524 TAGGCACTTC
* *
86556534 CACACAGGTAATCCACACGCCCGTGTGTGA
1 CACACAGGTAAACCACACGCCCATGTGTGA
* *
86556564 CACACGGGTAAACCACATGCCCATGTGT
1 CACACAGGTAAACCACACGCCCATGTGT
86556592 CATGGCTGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.33, G:0.22, T:0.17
Consensus pattern (30 bp):
CACACAGGTAAACCACACGCCCATGTGTGA
Found at i:86556909 original size:19 final size:19
Alignment explanation
Indices: 86556887--86556928 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
86556877 GTTTTTTAGG
86556887 TTTCTTTATGTTTTGTTGT
1 TTTCTTTATGTTTTGTTGT
86556906 TTTCTTTATGTTTTGTTGT
1 TTTCTTTATGTTTTGTTGT
86556925 TTTC
1 TTTC
86556929 CCAATTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.05, C:0.07, G:0.14, T:0.74
Consensus pattern (19 bp):
TTTCTTTATGTTTTGTTGT
Found at i:86561286 original size:39 final size:39
Alignment explanation
Indices: 86561242--86561506 Score: 404
Period size: 39 Copynumber: 6.8 Consensus size: 39
86561232 TATCAGCATA
* *
86561242 AAGCCTGCGGGACTTTAACCCGGATACATTTCCAGTACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
86561281 AAGCCTGCGGGACTTTGGCCCAGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
86561320 AAGCCTGCGGGACTTTGGCCTGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
86561359 AAGCCTGCGGGACTTTAGTCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* * * * *
86561398 AAGCCTGCAGGATTTTGGCCCAGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
86561437 AAGCCTGCGGGACTTTAGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
86561476 AAGCCTGCGAGACTTTAGCCCGGATACATTT
1 AAGCCTGCGGGACTTTAGCCCGGATACATTT
86561507 TCAGTGTCTT
Statistics
Matches: 205, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 205 1.00
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:86583168 original size:20 final size:20
Alignment explanation
Indices: 86583136--86583173 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
86583126 TGTTTCACAT
86583136 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
86583156 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
86583174 ACTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:86583684 original size:18 final size:18
Alignment explanation
Indices: 86583661--86583701 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
86583651 TACTTTTCTC
86583661 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
86583679 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
86583697 TTTCT
1 TTTCT
86583702 CTTCTTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:86584860 original size:12 final size:12
Alignment explanation
Indices: 86584845--86584875 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
86584835 TTCTCTTTTA
86584845 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
86584857 TTTTTCTTTCTC
1 TTTTTCTTTCCC
86584869 TTTTTCT
1 TTTTTCT
86584876 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:86587940 original size:39 final size:39
Alignment explanation
Indices: 86587891--86587982 Score: 107
Period size: 39 Copynumber: 2.3 Consensus size: 39
86587881 ACATTAAAAG
*
86587891 TATTTATATTA-A-AAAAAAACACTACCATAAAGATAATAAA
1 TATTT-TATTATATAAAAAAACAC-A-AATAAAGATAATAAA
* * *
86587931 TGTTTTATTATATTAAAAAACACAAATAAATATAATAAA
1 TATTTTATTATATAAAAAAACACAAATAAAGATAATAAA
86587970 TATTTTATTATAT
1 TATTTTATTATAT
86587983 TAAATATAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
39 30 0.67
40 6 0.13
41 9 0.20
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (39 bp):
TATTTTATTATATAAAAAAACACAAATAAAGATAATAAA
Found at i:86592464 original size:13 final size:13
Alignment explanation
Indices: 86592446--86592477 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
86592436 TCTTTTATCC
86592446 ACAAAAAAAAAAA
1 ACAAAAAAAAAAA
*
86592459 ACAAAAAAACAAA
1 ACAAAAAAAAAAA
86592472 ACAAAA
1 ACAAAA
86592478 CTTAACTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (13 bp):
ACAAAAAAAAAAA
Found at i:86595001 original size:22 final size:21
Alignment explanation
Indices: 86594960--86595001 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
86594950 GCTTTCCTTA
*
86594960 TTTTTAATTAGGATTGAATTT
1 TTTTTAATTAGGATTAAATTT
*
86594981 TTTTTAATTTGGATTCAAATT
1 TTTTTAATTAGGATT-AAATT
86595002 CAAACATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (21 bp):
TTTTTAATTAGGATTAAATTT
Found at i:86596192 original size:4 final size:4
Alignment explanation
Indices: 86596183--86596209 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
86596173 TGATCATTTT
86596183 CATA CATA CATA CATA CATA CATA CAT
1 CATA CATA CATA CATA CATA CATA CAT
86596210 GCATGCAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (4 bp):
CATA
Found at i:86598311 original size:24 final size:24
Alignment explanation
Indices: 86598279--86598325 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
86598269 TATCAAATCT
*
86598279 TTATTTCATAAACGCTGTTAGAAG
1 TTATTTCATAAACACTGTTAGAAG
86598303 TTATTTCATAAACACTGTTAGAA
1 TTATTTCATAAACACTGTTAGAA
86598326 TAGCATTCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (24 bp):
TTATTTCATAAACACTGTTAGAAG
Found at i:86601196 original size:15 final size:15
Alignment explanation
Indices: 86601171--86601207 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
86601161 TAAATGCTTC
86601171 TCTTTTT-TTCTTTT
1 TCTTTTTCTTCTTTT
86601185 TCTTTTTCTTCTTTT
1 TCTTTTTCTTCTTTT
*
86601200 TTTTTTTC
1 TCTTTTTC
86601208 AAAAAGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TCTTTTTCTTCTTTT
Found at i:86608056 original size:23 final size:23
Alignment explanation
Indices: 86608026--86608074 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
86608016 GATTAATCAT
*
86608026 TTATAATTGAATTTTGTTAACCA
1 TTATAATTGAATTTTGTTAACAA
86608049 TTATAATTGAATTTTGTTAACAA
1 TTATAATTGAATTTTGTTAACAA
86608072 TTA
1 TTA
86608075 CCTATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.49
Consensus pattern (23 bp):
TTATAATTGAATTTTGTTAACAA
Found at i:86618868 original size:15 final size:16
Alignment explanation
Indices: 86618843--86618872 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
86618833 TATCTATCGA
86618843 GAAAAATTCAAAACAC
1 GAAAAATTCAAAACAC
86618859 GAAAAA-TCAAAACA
1 GAAAAATTCAAAACA
86618873 TTATGCAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.67, C:0.17, G:0.07, T:0.10
Consensus pattern (16 bp):
GAAAAATTCAAAACAC
Found at i:86621607 original size:40 final size:40
Alignment explanation
Indices: 86621563--86621659 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
86621553 ATAATACCTC
* *
86621563 AAAGTGGATAGGATTTGTTCCTGATTCACTACGGTAATTT
1 AAAGTGGATAGGATTTGTCCCTGATTCACTACGGTAACTT
* *
86621603 AAAGTGAATAGGATTTATCCCTGATTCACTACGGTAACTT
1 AAAGTGGATAGGATTTGTCCCTGATTCACTACGGTAACTT
* * *
86621643 AAGGCGGATAAGATTTG
1 AAAGTGGATAGGATTTG
86621660 ACTTGAAAAG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (40 bp):
AAAGTGGATAGGATTTGTCCCTGATTCACTACGGTAACTT
Found at i:86622146 original size:29 final size:29
Alignment explanation
Indices: 86622078--86622150 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
86622068 ACCCATCTCA
* *
86622078 TCAAAATTATGTCTTCAGAATCCATCCCC
1 TCAAAATTATTTTTTCAGAATCCATCCCC
* **
86622107 TCAAAACTATTTTTTCAGAATCCATCCTG
1 TCAAAATTATTTTTTCAGAATCCATCCCC
86622136 T-ACAAATTATTTTTT
1 TCA-AAATTATTTTTT
86622151 TCATACCTCC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
28 1 0.03
29 36 0.97
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (29 bp):
TCAAAATTATTTTTTCAGAATCCATCCCC
Found at i:86622814 original size:20 final size:21
Alignment explanation
Indices: 86622776--86622826 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
86622766 ATAACAATAG
* **
86622776 TATTTTATTTTTATGATAT-A
1 TATTTTATTTATAAAATATGA
86622796 TATTTTATTTATAAAATATGA
1 TATTTTATTTATAAAATATGA
*
86622817 TATGTTATTT
1 TATTTTATTT
86622827 TACTAATTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (21 bp):
TATTTTATTTATAAAATATGA
Found at i:86624161 original size:15 final size:15
Alignment explanation
Indices: 86624137--86624171 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
86624127 TGACTTCTAG
86624137 TATT-TAATTATATT
1 TATTATAATTATATT
*
86624151 TGTTATAATTATATT
1 TATTATAATTATATT
86624166 TATTAT
1 TATTAT
86624172 TTATTAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTATAATTATATT
Found at i:86627388 original size:21 final size:22
Alignment explanation
Indices: 86627362--86627408 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
86627352 CTCTGCTCAA
*
86627362 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
86627383 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
86627405 ACTC
1 ACTC
86627409 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:86637045 original size:17 final size:18
Alignment explanation
Indices: 86637023--86637066 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
86637013 ATATTTTCAA
*
86637023 TTACATTAAA-TATTATT
1 TTACATTAAATTAATATT
*
86637040 TTACATCAAATTAATATT
1 TTACATTAAATTAATATT
86637058 TTAACATTA
1 TT-ACATTA
86637067 CTGTTTTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 9 0.41
18 8 0.36
19 5 0.23
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (18 bp):
TTACATTAAATTAATATT
Found at i:86652237 original size:3 final size:3
Alignment explanation
Indices: 86652231--86652671 Score: 66
Period size: 3 Copynumber: 148.3 Consensus size: 3
86652221 CAAAAAAAAT
* * *
86652231 ATA ATA ATA ATA AT- ACA ATA GTA ATA ATA ATA CAAA AGGT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA A--TA ATA ATA
* * * *
86652277 AT- ATA TTA GATA GTA A-A A-A AAA ATA ATA ATA ATA ACA GA-A ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * * * * *
86652320 AAA ATG GTA ATA GTG ATA TTA GTA ATA ATA ATA ATA GGA-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA
* * * * *
86652366 GTA CATTA ATA ATA ATA ATA TATG TTA ATA ACA ATA ATA ACA TATA A-A
1 ATA -A-TA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * *
86652414 A-A ATA GGA-A ATA ATA AT- ATG GTA A-A A-A ATA ATA ATA ATA ACA
1 ATA ATA --ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
86652456 A-A A-A AGA GTA ATA ATA GTA GTA A-A AAA AT- ATA AAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
86652500 ATA GTA CA-A A-A ATG ACA ATA A-A ATA A-G ATG ATA ATA ATG ATA
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * **
86652542 ATA A-A AAA ATA AAA ATA GTA ATA ATG GCA ATA ATA ATA CCATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA
* * * * * * * *
86652588 A-A AGA AAA AGAA ATA ATA ACA TGTAA ATA ATA ATA ACA ATA ATG ACA
1 ATA ATA ATA A-TA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA
* * * *
86652635 ATA AT- ATA TTTA ATA AAA ATA ATA GTA AAA ATA ATA A
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA A
86652672 AATTAACTAA
Statistics
Matches: 311, Mismatches: 88, Indels: 78
0.65 0.18 0.16
Matches are distributed among these distances:
2 41 0.13
3 243 0.78
4 19 0.06
5 8 0.03
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:86652257 original size:17 final size:18
Alignment explanation
Indices: 86652235--86652279 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
86652225 AAAAATATAA
*
86652235 TAATAATAATACAATA-G
1 TAATAATAATACAAAAGG
86652252 TAATAATAATACAAAAGG
1 TAATAATAATACAAAAGG
86652270 T-ATAATAATA
1 TAATAATAATA
86652280 TATTAGATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 24 0.92
18 2 0.08
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (18 bp):
TAATAATAATACAAAAGG
Found at i:86652524 original size:28 final size:28
Alignment explanation
Indices: 86652464--86652525 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
86652454 CAAAAAAGAG
* *
86652464 TAATAATAGTAGTAAAAAAATATAAAAA
1 TAATAATAATAGTAAAAAAATACAAAAA
* *
86652492 TAATAATAATAGTACAAAAATGACAATAA
1 TAATAATAATAGTAAAAAAAT-ACAAAAA
86652521 -AATAA
1 TAATAA
86652526 GATGATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 24 0.83
29 5 0.17
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.24
Consensus pattern (28 bp):
TAATAATAATAGTAAAAAAATACAAAAA
Found at i:86652525 original size:31 final size:28
Alignment explanation
Indices: 86652455--86652512 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
86652445 TAATAATAAC
*
86652455 AAAAAAGAGTAATAATAGTAGTAAAAAAAT
1 AAAAAA-A-TAATAATAATAGTAAAAAAAT
* *
86652485 ATAAAAATAATAATAATAGTACAAAAAT
1 AAAAAAATAATAATAATAGTAAAAAAAT
86652513 GACAATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 19 0.76
29 1 0.04
30 5 0.20
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (28 bp):
AAAAAAATAATAATAATAGTAAAAAAAT
Found at i:86652829 original size:43 final size:43
Alignment explanation
Indices: 86652780--86652868 Score: 160
Period size: 43 Copynumber: 2.1 Consensus size: 43
86652770 AGAAAAGGAC
* *
86652780 TAAATTGCGTGTGCAAATACCCAGGAGGGACTAAAATGGACAA
1 TAAATTGCATGCGCAAATACCCAGGAGGGACTAAAATGGACAA
86652823 TAAATTGCATGCGCAAATACCCAGGAGGGACTAAAATGGACAA
1 TAAATTGCATGCGCAAATACCCAGGAGGGACTAAAATGGACAA
86652866 TAA
1 TAA
86652869 CCCCTCCCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.18
Consensus pattern (43 bp):
TAAATTGCATGCGCAAATACCCAGGAGGGACTAAAATGGACAA
Found at i:86654391 original size:44 final size:44
Alignment explanation
Indices: 86654356--86654816 Score: 323
Period size: 44 Copynumber: 10.6 Consensus size: 44
86654346 CGATTTGCTC
*
86654356 CCCTACTGCTTAAGGGGTTAAGATCCATTACCTTCGATCTGTTT
1 CCCTACTGCTTAAGGGGTTAAGATCCATCACCTTCGATCTGTTT
* * * * *
86654400 TCCTACTACTTAGGGGGTTAAAATCTATCACCTTCGATCTGTTT
1 CCCTACTGCTTAAGGGGTTAAGATCCATCACCTTCGATCTGTTT
* ** ** * *
86654444 CCTTACTGCTT-AGAGGGTTAAGATCTGT-AAATTC-AGCCTGTTA
1 CCCTACTGCTTAAG-GGGTTAAGATCCATCACCTTCGA-TCTGTTT
* * * * *
86654487 CCTTACTACTT-AGGGGTTTAAGGTCCATTACCTTTGATCTGTTT
1 CCCTACTGCTTAAGGGG-TTAAGATCCATCACCTTCGATCTGTTT
* * *** ** * *
86654531 CCCTACTGTTTAGGGGGTTAAGATTTGT-AAATTC-AGCCTGTTA
1 CCCTACTGCTTAAGGGGTTAAGATCCATCACCTTCGA-TCTGTTT
** *
86654574 CCCTACTGCTT-AGGGGTTTAAGGCCCATCACCTTCGATCTATTT
1 CCCTACTGCTTAAGGGG-TTAAGATCCATCACCTTCGATCTGTTT
* * * *** ** * *
86654618 TCCTGCTGCTTAGGGGGTTAAGATTTGT-AAATTC-AGCCTGTTA
1 CCCTACTGCTTAAGGGGTTAAGATCCATCACCTTCGA-TCTGTTT
** * * *
86654661 CCCTACTGCTT-AGGGGTTTAAGGCCCATCAACTTCAATCTATTT
1 CCCTACTGCTTAAGGGG-TTAAGATCCATCACCTTCGATCTGTTT
* ** *
86654705 CCCTACTGCTTAGGGGGTTAAGATCTGTCACATTCGATCTGTTT
1 CCCTACTGCTTAAGGGGTTAAGATCCATCACCTTCGATCTGTTT
* *
86654749 CCCTACTGCTTAGGGGGTTAAGATCTATCACCTTCGATCTGTTT
1 CCCTACTGCTTAAGGGGTTAAGATCCATCACCTTCGATCTGTTT
86654793 CCCTACTGCTT-AGGGGTTAAGATC
1 CCCTACTGCTTAAGGGGTTAAGATC
86654817 TGTAAATTCA
Statistics
Matches: 314, Mismatches: 87, Indels: 33
0.72 0.20 0.08
Matches are distributed among these distances:
42 14 0.04
43 89 0.28
44 196 0.62
45 15 0.05
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (44 bp):
CCCTACTGCTTAAGGGGTTAAGATCCATCACCTTCGATCTGTTT
Found at i:86654526 original size:87 final size:87
Alignment explanation
Indices: 86654302--86654857 Score: 618
Period size: 87 Copynumber: 6.4 Consensus size: 87
86654292 TTGTAATTCC
* * * * ** * * *
86654302 CAGCCTGTTACCCTGCTGCTTAGGGGGTTAAGG-CTTACCGTCTTCGATTTGCTCCCCTACTGCT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTC-CATCACCTTCGATCTGTTTCCCTACTGCT
* **
86654366 TAAGGGGTTAAGATCCAT-TACCTT
65 TAGGGGGTTAAGAT-C-TGTAAATT
* ** * * ** * *
86654390 C-GATCTGTTTTCCTACTACTTAGGGGGTTAAAATCTATCACCTTCGATCTGTTTCCTTACTGCT
1 CAG-CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGATCTGTTTCCCTACTGCT
*
86654454 TAGAGGGTTAAGATCTGTAAATT
65 TAGGGGGTTAAGATCTGTAAATT
* * * * *
86654477 CAGCCTGTTACCTTACTACTTAGGGGTTTAAGGTCCATTACCTTTGATCTGTTTCCCTACTGTTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGATCTGTTTCCCTACTGCTT
*
86654542 AGGGGGTTAAGATTTGTAAATT
66 AGGGGGTTAAGATCTGTAAATT
* * * *
86654564 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTTCCTGCTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGATCTGTTTCCCTACTGCTT
*
86654629 AGGGGGTTAAGATTTGTAAATT
66 AGGGGGTTAAGATCTGTAAATT
* * * *
86654651 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCAACTTCAATCTATTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGATCTGTTTCCCTACTGCTT
*
86654716 AGGGGGTTAAGATCTGTCACATT
66 AGGGGGTTAAGATCTGT-AAATT
* * * * *
86654739 C-GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCACCTTCGATCTGTTTCCCTACTGCT
1 CAG-CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGATCTGTTTCCCTACTGCT
86654803 TA-GGGGTTAAGATCTGTAAATT
65 TAGGGGGTTAAGATCTGTAAATT
* *
86654825 CAGCCTGTTACCGTACTGCTTTGGGGTTTAAGG
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
86654858 CCTGTGGATT
Statistics
Matches: 398, Mismatches: 63, Indels: 16
0.83 0.13 0.03
Matches are distributed among these distances:
86 30 0.08
87 249 0.63
88 118 0.30
89 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (87 bp):
CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGATCTGTTTCCCTACTGCTT
AGGGGGTTAAGATCTGTAAATT
Found at i:86655030 original size:64 final size:64
Alignment explanation
Indices: 86654929--86655056 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
86654919 TCATGTATAT
*
86654929 ATGCTTATGCCAAATAATTAGGATGCAATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCAATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
* * * *
86654993 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTTCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCAATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
86655057 TTATTATTGA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCAATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:86663224 original size:26 final size:26
Alignment explanation
Indices: 86663195--86663247 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
86663185 TGAAACATGC
86663195 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
86663221 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
86663247 A
1 A
86663248 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:86664757 original size:26 final size:26
Alignment explanation
Indices: 86664719--86664776 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
86664709 CATGAAATTC
86664719 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86664745 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
86664771 TTATCA
1 TTATCA
86664777 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86668994 original size:25 final size:27
Alignment explanation
Indices: 86668957--86669009 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
86668947 TCAAACATGC
86668957 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
86668983 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
86669009 A
1 A
86669010 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:86670522 original size:26 final size:26
Alignment explanation
Indices: 86670484--86670567 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
86670474 CATGAAATTC
*
86670484 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
86670510 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
86670536 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
86670562 TTATCA
1 TTATCA
86670568 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:86671202 original size:17 final size:18
Alignment explanation
Indices: 86671177--86671210 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
86671167 TAACTAAGTA
*
86671177 ATGAGAAAATA-AATAAG
1 ATGAAAAAATATAATAAG
86671194 ATGAAAAAATATAATAA
1 ATGAAAAAATATAATAA
86671211 CAATACAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.21
Consensus pattern (18 bp):
ATGAAAAAATATAATAAG
Found at i:86671481 original size:3 final size:3
Alignment explanation
Indices: 86671475--86671902 Score: 101
Period size: 3 Copynumber: 144.3 Consensus size: 3
86671465 AGAAGAAAAT
* * * *
86671475 ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA AAA AGGT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
* * * *
86671520 ATA ATA AT- ATA TTA GATA GTA A-A AAA ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
86671564 GTG ATA TTA GTA ATA ATA ATA ATA GGA-A ATA ATA GTA CATTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA -A-TA ATA ATA
* * * *
86671612 ATA TATG TTA ATA ACA ATA ATA ACA TATA A-A A-A ATA GGA-A ATA ATA
1 ATA -ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA --ATA ATA ATA
* * * * * * *
86671658 AT- ATG GTA A-A A-A ACA ATA ATA ATA ACA A-A AAA AGA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
86671702 GTA GTA A-A AAA AT- ATA AAA ATA ATA ATA ATA GTA CA-A A-A ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * * * * *
86671744 ACA ATA A-A ATA A-G ATG ATA ATA ATG ATA ATA A-A AAA ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
86671789 GTA ATA ATGG A-A ATA ATA ATA ATA CCATA ATA A-A AAA AT- GTA ATA
1 ATA ATA AT-A ATA ATA ATA ATA ATA --ATA ATA ATA ATA ATA ATA ATA
* * * * *
86671834 ATA ACA TGTAA ATA ATA ATA ACA ATA ATA ACA ATA AT- ATA TTTA ATA
1 ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * *
86671881 AAA ATA ATA GTA AAA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
86671903 AATTAACTAA
Statistics
Matches: 305, Mismatches: 82, Indels: 76
0.66 0.18 0.16
Matches are distributed among these distances:
2 38 0.12
3 245 0.80
4 14 0.05
5 8 0.03
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:86671500 original size:20 final size:20
Alignment explanation
Indices: 86671472--86671513 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
86671462 AAAAGAAGAA
* *
86671472 AATATAATAATAATAGTAAT
1 AATACAATAATAATAATAAT
*
86671492 AATACAATAGTAATAATAAT
1 AATACAATAATAATAATAAT
86671512 AA
1 AA
86671514 AAAGGTATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (20 bp):
AATACAATAATAATAATAAT
Found at i:86671502 original size:14 final size:13
Alignment explanation
Indices: 86671471--86671510 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
86671461 AAAAAGAAGA
86671471 AAATA-TAATAAT
1 AAATAGTAATAAT
86671483 -AATAGTAATAAT
1 AAATAGTAATAAT
86671495 ACAATAGTAATAAT
1 A-AATAGTAATAAT
86671509 AA
1 AA
86671511 TAAAAAGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.16
12 7 0.28
13 1 0.04
14 13 0.52
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (13 bp):
AAATAGTAATAAT
Found at i:86671558 original size:20 final size:22
Alignment explanation
Indices: 86671475--86671561 Score: 61
Period size: 23 Copynumber: 3.7 Consensus size: 22
86671465 AGAAGAAAAT
*
86671475 ATAATAATAATAGTAATAATACA
1 ATAATAATAATAGTAA-AAGACA
* * *
86671498 ATAGTAATAATAATAAAAAGGTATA
1 ATAATAATAATAGT-AAAA-G-ACA
86671523 ATAATATATTAGATAGTAAAA-A-A
1 ATAATA-A-TA-ATAGTAAAAGACA
86671546 ATAATAATAATAGTAA
1 ATAATAATAATAGTAA
86671562 TAGTGATATT
Statistics
Matches: 52, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
20 7 0.13
21 2 0.04
22 1 0.02
23 21 0.40
24 3 0.06
25 7 0.13
26 1 0.02
27 6 0.12
28 4 0.08
ACGTcount: A:0.61, C:0.01, G:0.08, T:0.30
Consensus pattern (22 bp):
ATAATAATAATAGTAAAAGACA
Found at i:86671754 original size:28 final size:28
Alignment explanation
Indices: 86671694--86671755 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
86671684 AAAAAAAGAG
* *
86671694 TAATAATAGTAGTAAAAAAATATAAAAA
1 TAATAATAATAGTAAAAAAATACAAAAA
* *
86671722 TAATAATAATAGTACAAAAATGACAATAA
1 TAATAATAATAGTAAAAAAAT-ACAAAAA
86671751 -AATAA
1 TAATAA
86671756 GATGATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 24 0.83
29 5 0.17
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.24
Consensus pattern (28 bp):
TAATAATAATAGTAAAAAAATACAAAAA
Found at i:86671755 original size:31 final size:28
Alignment explanation
Indices: 86671685--86671742 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
86671675 AATAATAACA
*
86671685 AAAAAAGAGTAATAATAGTAGTAAAAAAAT
1 AAAAAA-A-TAATAATAATAGTAAAAAAAT
* *
86671715 ATAAAAATAATAATAATAGTACAAAAAT
1 AAAAAAATAATAATAATAGTAAAAAAAT
86671743 GACAATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 19 0.76
29 1 0.04
30 5 0.20
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (28 bp):
AAAAAAATAATAATAATAGTAAAAAAAT
Found at i:86671804 original size:38 final size:39
Alignment explanation
Indices: 86671762--86671835 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 39
86671752 ATAAGATGAT
* *
86671762 AATAATGATAATAAAAAAATAAAAATA-GTAATAATGGA
1 AATAATAATAATAAAAAAATAAAAAAATGTAATAATGGA
** *
86671800 AATAATAATAATACCATAATAAAAAAATGTAATAAT
1 AATAATAATAATAAAAAAATAAAAAAATGTAATAAT
86671836 AACATGTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
38 22 0.73
39 8 0.27
ACGTcount: A:0.65, C:0.03, G:0.07, T:0.26
Consensus pattern (39 bp):
AATAATAATAATAAAAAAATAAAAAAATGTAATAATGGA
Found at i:86672060 original size:43 final size:43
Alignment explanation
Indices: 86672011--86672099 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
86672001 AGAAAAGGAC
86672011 TAAATTGCATGCGCAAATACCCAGGAGGGACTAAAATGGACAA
1 TAAATTGCATGCGCAAATACCCAGGAGGGACTAAAATGGACAA
86672054 TAAATTGCATGCGCAAATACCCAGGAGGGACTAAAATGGACAA
1 TAAATTGCATGCGCAAATACCCAGGAGGGACTAAAATGGACAA
86672097 TAA
1 TAA
86672100 CCCCTCCCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.17
Consensus pattern (43 bp):
TAAATTGCATGCGCAAATACCCAGGAGGGACTAAAATGGACAA
Found at i:86681408 original size:4 final size:4
Alignment explanation
Indices: 86681399--86681431 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
86681389 TAGAGGAAAG
86681399 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
86681432 AAGGGAGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:86685790 original size:20 final size:21
Alignment explanation
Indices: 86685765--86685808 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
86685755 ACTTTAGCCA
* *
86685765 TTTTTATTTTTATTGC-AATT
1 TTTTTATTTTAATTACTAATT
86685785 TTTTTATTTTAATTACTAATT
1 TTTTTATTTTAATTACTAATT
86685806 TTT
1 TTT
86685809 CTTTTGTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTTATTTTAATTACTAATT
Found at i:86687966 original size:27 final size:27
Alignment explanation
Indices: 86687936--86688026 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
86687926 ATTACCAAAG
86687936 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
** *
86687963 TACCCTTAATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
86687990 TACCCTCGATTTACAAAATTACCG-TT
1 TACCCTCGATTTATAGAATTACTGTTT
86688016 TACCCTCGATT
1 TACCCTCGATT
86688027 GCGAAATTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
26 13 0.24
27 42 0.76
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:86688097 original size:54 final size:54
Alignment explanation
Indices: 86688030--86688156 Score: 150
Period size: 54 Copynumber: 2.4 Consensus size: 54
86688020 CTCGATTGCG
* * *
86688030 AAATTACTAAAATACCCCTA-TAGGGT-AGAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTAGT-GGGTGA-AATTACCAAAATACCCTCAATTTGTA
* * ** *
86688084 GAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCCTAGTGGGTGAAATTACCAAAATACCCTCAATTTGTA
86688138 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
86688157 GATTTAAAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
54 59 0.97
55 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.28
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTGGGTGAAATTACCAAAATACCCTCAATTTGTA
Found at i:86688161 original size:27 final size:27
Alignment explanation
Indices: 86688030--86688181 Score: 132
Period size: 27 Copynumber: 5.6 Consensus size: 27
86688020 CTCGATTGCG
* **
86688030 AAATTACTAAAATACCCCTA-TAGGGTA
1 AAATTACCAAAATACCCCTAGT-TTGTA
* *
86688057 GAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
86688084 GAATTACCAAAATACCACTAGTTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
86688111 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AGTTTGTA
**
86688138 AAATTACCAAAATACCCCT-GATTTAAA
1 AAATTACCAAAATACCCCTAG-TTTGTA
86688165 AAATTA-CAGAAATACCC
1 AAATTACCA-AAATACCC
86688182 TTGACTTTCT
Statistics
Matches: 103, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
26 5 0.05
27 93 0.90
28 5 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:86688169 original size:54 final size:54
Alignment explanation
Indices: 86688058--86688182 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 54
86688048 TATAGGGTAG
* * * * ***
86688058 AATTACCAAAATACCCTTAGTTTGTAGAATTACCAAAATACCACTAGTTTGTGA
1 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAGTTTAAAA
*
86688112 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTAAAA
1 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAG-TTTAAAA
*
86688166 AATTACAGAAATACCCT
1 AATTACCGAAATACCCT
86688183 TGACTTTCTA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.02
54 60 0.98
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (54 bp):
AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAGTTTAAAA
Found at i:86688232 original size:27 final size:27
Alignment explanation
Indices: 86688193--86688244 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
86688183 TGACTTTCTA
*
86688193 AAAATTATAGAAATACTATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
86688220 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
86688245 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:86688327 original size:26 final size:27
Alignment explanation
Indices: 86688285--86688357 Score: 78
Period size: 26 Copynumber: 2.7 Consensus size: 27
86688275 AAATGACTAA
*
86688285 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
* **
86688312 AA-GCCCCTGTAGGGTAAAGTGACCGT
1 AATACCCCTGTAGGGTAAAAAGACCGT
*
86688338 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
86688358 TGACGAATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 2 0.05
26 19 0.51
27 16 0.43
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:86688354 original size:27 final size:26
Alignment explanation
Indices: 86688298--86688361 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
86688288 ACCCCTAATA
* *
86688298 GGTAAAAAGACCGTAAGCCCCTGTAG
1 GGTAAAATGACCGTAAACCCCTGTAG
* *
86688324 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAA-ACCCCTGTAG
86688351 GGTAAAATGAC
1 GGTAAAATGAC
86688362 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 14 0.44
27 18 0.56
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
GGTAAAATGACCGTAAACCCCTGTAG
Found at i:86689226 original size:24 final size:25
Alignment explanation
Indices: 86689150--86689219 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
86689140 AGGAGGTGCT
* * * *
86689150 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
86689175 GAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
86689200 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
86689220 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:86689232 original size:24 final size:24
Alignment explanation
Indices: 86689176--86689246 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 24
86689166 AGTTTACCGG
86689176 AAAG-GGCTTTGCCCCAGTTTATCA
1 AAAGAGGCTTTGCCCCAG-TTATCA
*
86689200 AAA-AGGGCTTTGCCCCAGTTATTA
1 AAAGA-GGCTTTGCCCCAGTTATCA
**
86689224 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAGAGGCTTTGCC-CCAGTTAT
86689247 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 18 0.45
25 22 0.55
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAGAGGCTTTGCCCCAGTTATCA
Found at i:86694653 original size:6 final size:6
Alignment explanation
Indices: 86694609--86694662 Score: 54
Period size: 6 Copynumber: 8.8 Consensus size: 6
86694599 TTGAGTCCGA
* * * * *
86694609 TTATTT TTATGT TTATAT TTGTCT TTATTT TTATCTT TTGTTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTAT-TT TTATTT TTATTT
86694658 TTATT
1 TTATT
86694663 CTTCTTGTTA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
6 34 0.87
7 5 0.13
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.76
Consensus pattern (6 bp):
TTATTT
Found at i:86694654 original size:19 final size:19
Alignment explanation
Indices: 86694612--86694671 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
86694602 AGTCCGATTA
* *
86694612 TTTTTATGTTTAT-ATTTG
1 TTTTTATTTTTATCTTTTG
*
86694630 TCTTTATTTTTATCTTTTG
1 TTTTTATTTTTATCTTTTG
86694649 TTTTTATTTTTATTCTTCTTG
1 TTTTTATTTTTA-TCTT-TTG
86694670 TT
1 TT
86694672 ATGTCTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
18 11 0.31
19 15 0.43
20 4 0.11
21 5 0.14
ACGTcount: A:0.12, C:0.07, G:0.07, T:0.75
Consensus pattern (19 bp):
TTTTTATTTTTATCTTTTG
Found at i:86695805 original size:32 final size:32
Alignment explanation
Indices: 86695769--86695832 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
86695759 TTTTCTAGTT
86695769 AGGTAATTTATCAAATCGATCTCGATTCTAAC
1 AGGTAATTTATCAAATCGATCTCGATTCTAAC
86695801 AGGTAATTTATCAAATCGATCTCGATTCTAAC
1 AGGTAATTTATCAAATCGATCTCGATTCTAAC
86695833 CTGCTTTTCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (32 bp):
AGGTAATTTATCAAATCGATCTCGATTCTAAC
Found at i:86698678 original size:16 final size:17
Alignment explanation
Indices: 86698636--86698686 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 17
86698626 TGTTCATAAT
*
86698636 AAATATT-TAAGT-AAA
1 AAATATTATAATTCAAA
86698651 AAATATTATAATTCAAA
1 AAATATTATAATTCAAA
* *
86698668 AAAT-TTCTAATTTAAA
1 AAATATTATAATTCAAA
86698684 AAA
1 AAA
86698687 AAGTATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 7 0.23
16 17 0.55
17 7 0.23
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (17 bp):
AAATATTATAATTCAAA
Found at i:86699448 original size:20 final size:20
Alignment explanation
Indices: 86699423--86699485 Score: 69
Period size: 19 Copynumber: 3.2 Consensus size: 20
86699413 TTTCTAAGAT
86699423 TTTAATTATAATTTATAATA
1 TTTAATTATAATTTATAATA
*
86699443 TTTAATGAT-ATTTA-AATA
1 TTTAATTATAATTTATAATA
**
86699461 TTTTTTTATAATTT-TAATAA
1 TTTAATTATAATTTATAAT-A
86699481 TTTAA
1 TTTAA
86699486 AAAAATCAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 10 0.29
19 12 0.35
20 12 0.35
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TTTAATTATAATTTATAATA
Found at i:86699527 original size:32 final size:31
Alignment explanation
Indices: 86699483--86699568 Score: 118
Period size: 32 Copynumber: 2.7 Consensus size: 31
86699473 TTTAATAATT
*
86699483 TAAAAAAATCAATTAAGCCCTTATAAAGTAA
1 TAAAAAAATCAATTAAGCCCTTATAAAATAA
** *
86699514 TAAAAAAAGTCAATTAAGCTATAATAAAATAA
1 TAAAAAAA-TCAATTAAGCCCTTATAAAATAA
*
86699546 TAGAAAAATCAATTAAGCCCTTA
1 TAAAAAAATCAATTAAGCCCTTA
86699569 CTGTCAACAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 20 0.43
32 26 0.57
ACGTcount: A:0.56, C:0.12, G:0.07, T:0.26
Consensus pattern (31 bp):
TAAAAAAATCAATTAAGCCCTTATAAAATAA
Found at i:86703183 original size:4 final size:4
Alignment explanation
Indices: 86703161--86703210 Score: 73
Period size: 4 Copynumber: 12.5 Consensus size: 4
86703151 ACTAACAACC
* * *
86703161 TATT TAAT TAAT TAAT TATT TATT TATT TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
86703209 TA
1 TA
86703211 GGTAAAAACC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (4 bp):
TATT
Found at i:86707268 original size:47 final size:49
Alignment explanation
Indices: 86707216--86707307 Score: 152
Period size: 47 Copynumber: 1.9 Consensus size: 49
86707206 AGACATGTTT
86707216 TTTTAGTTCTTTTAAATATTTATATA-TA-TTTTTATAAATTTATGAAA
1 TTTTAGTTCTTTTAAATATTTATATATTATTTTTTATAAATTTATGAAA
* *
86707263 TTTTAGTTCTTTTATATATTTATATATTATTTTTTATTAATTTAT
1 TTTTAGTTCTTTTAAATATTTATATATTATTTTTTATAAATTTAT
86707308 ATATATTTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
47 25 0.61
48 2 0.05
49 14 0.34
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (49 bp):
TTTTAGTTCTTTTAAATATTTATATATTATTTTTTATAAATTTATGAAA
Found at i:86710582 original size:14 final size:16
Alignment explanation
Indices: 86710540--86710576 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
86710530 CGCTCAATCG
*
86710540 TGCTTTCCCTCTCTCT
1 TGCTTTCCTTCTCTCT
86710556 TGCTTTCCTTCTCTCT
1 TGCTTTCCTTCTCTCT
86710572 TGCTT
1 TGCTT
86710577 CTTCTCAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.00, C:0.38, G:0.08, T:0.54
Consensus pattern (16 bp):
TGCTTTCCTTCTCTCT
Found at i:86721784 original size:17 final size:18
Alignment explanation
Indices: 86721740--86721796 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 18
86721730 ATTATAGTAA
*
86721740 TATTATATATTTTTATAG
1 TATTATAAATTTTTATAG
86721758 -ATT-T-AATTTTTAT-G
1 TATTATAAATTTTTATAG
*
86721772 TATTATAAA-TTTTATAA
1 TATTATAAATTTTTATAG
86721789 TA-TATAAA
1 TATTATAAA
86721797 AATAAAATTG
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 1 0.03
15 11 0.33
16 14 0.42
17 7 0.21
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (18 bp):
TATTATAAATTTTTATAG
Found at i:86723065 original size:13 final size:12
Alignment explanation
Indices: 86723043--86723080 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
86723033 TTATATGTAC
86723043 TTTA-TTTTATT
1 TTTATTTTTATT
86723054 TTGTATTTTTATAT
1 TT-TATTTTTAT-T
86723068 TTTATTTTTATT
1 TTTATTTTTATT
86723080 T
1 T
86723081 GCCTATTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.08
12 4 0.17
13 15 0.62
14 3 0.12
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (12 bp):
TTTATTTTTATT
Found at i:86723078 original size:6 final size:6
Alignment explanation
Indices: 86723043--86723080 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
86723033 TTATATGTAC
86723043 TTTA-T TTTATT TTGTATT TTTATAT TTTATT TTTATT T
1 TTTATT TTTATT TT-TATT TTTAT-T TTTATT TTTATT T
86723081 GCCTATTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
5 4 0.13
6 14 0.47
7 12 0.40
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:86723087 original size:19 final size:20
Alignment explanation
Indices: 86723045--86723088 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
86723035 ATATGTACTT
**
86723045 TATTTTATTTTGTATTTTTA
1 TATTTTATTTTGTATTTGCA
*
86723065 TATTTTATTTT-TATTTGCC
1 TATTTTATTTTGTATTTGCA
86723084 TATTT
1 TATTT
86723089 AGGTACTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.73
Consensus pattern (20 bp):
TATTTTATTTTGTATTTGCA
Found at i:86723164 original size:23 final size:21
Alignment explanation
Indices: 86723137--86723223 Score: 70
Period size: 22 Copynumber: 4.0 Consensus size: 21
86723127 ACATTGTCTT
86723137 TATTTTTATTTTTTTTCTTATCA
1 TATTTTTATTTTTTTT-TTAT-A
*
86723160 TATTTTT-TTACTTTTTTTATA
1 TATTTTTATT-TTTTTTTTATA
** *
86723181 TATATTTTATTTCCTCTTT-TA
1 TAT-TTTTATTTTTTTTTTATA
86723202 TATTTTTATTTATTTCTTTTAT
1 TATTTTTATTT-TTT-TTTTAT
86723224 CATTGTTATT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
20 8 0.16
21 10 0.20
22 17 0.34
23 15 0.30
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (21 bp):
TATTTTTATTTTTTTTTTATA
Found at i:86723219 original size:21 final size:20
Alignment explanation
Indices: 86723137--86723233 Score: 63
Period size: 21 Copynumber: 4.5 Consensus size: 20
86723127 ACATTGTCTT
86723137 TATTTTTATTTTTT-TTCTTA
1 TATTTTTATTTTTTCTT-TTA
*
86723157 TCATATTTT-TTTACTTTTTTTATA
1 T-AT-TTTTATTT--TTTCTTT-TA
**
86723181 TATATTTTATTTCCTCTTTTA
1 TAT-TTTTATTTTTTCTTTTA
86723202 TATTTTTATTTATTTCTTTTA
1 TATTTTTATTT-TTTCTTTTA
*
86723223 TCATTGTTATT
1 T-ATTTTTATT
86723234 ATTGTTATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
20 9 0.15
21 18 0.29
22 16 0.26
23 11 0.18
24 8 0.13
ACGTcount: A:0.19, C:0.08, G:0.01, T:0.72
Consensus pattern (20 bp):
TATTTTTATTTTTTCTTTTA
Found at i:86724037 original size:131 final size:131
Alignment explanation
Indices: 86723871--86724259 Score: 697
Period size: 131 Copynumber: 3.0 Consensus size: 131
86723861 TTAGAAAACG
*
86723871 TGAGTAAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGAAAATTGCAACCCAGCACGAT
1 TGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGAAAATTGCAACCCAGCACGAT
86723936 AGGGCACGATTCCCCGAATTGCCAAGCATCAAACATTTCCTTCGTTTTAAAGAATTTTTAAAGAC
66 AGGGCACGATTCCCCGAATTGCCAAGCATCAAACATTTCCTTCGTTTTAAAGAATTTTTAAAGAC
86724001 A
131 A
86724002 TGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGAAAATTGCAACCCAGCACGAT
1 TGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGAAAATTGCAACCCAGCACGAT
*
86724067 AGGGCACGATTCCCCGAATTGCCAAACATCAAACATTTCCTTCGTTTTAAAGAATTTTTAAAGAC
66 AGGGCACGATTCCCCGAATTGCCAAGCATCAAACATTTCCTTCGTTTTAAAGAATTTTTAAAGAC
86724132 A
131 A
*
86724133 TGAGTGAAATTCCAAAGGAATATTCTATTATTTTGAACAAACGGAAAATTGCAACCCAGCACGAT
1 TGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGAAAATTGCAACCCAGCACGAT
* * * * * *
86724198 TGGGTACGATTCCCCAAATTGCCAAGCATCGAAGATTGCCTTCGTTTTAAAGAATTTTTAAA
66 AGGGCACGATTCCCCGAATTGCCAAGCATCAAACATTTCCTTCGTTTTAAAGAATTTTTAAA
86724260 TGAATAATTA
Statistics
Matches: 248, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
131 248 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (131 bp):
TGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGAAAATTGCAACCCAGCACGAT
AGGGCACGATTCCCCGAATTGCCAAGCATCAAACATTTCCTTCGTTTTAAAGAATTTTTAAAGAC
A
Found at i:86725116 original size:3 final size:3
Alignment explanation
Indices: 86725108--86725148 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
86725098 AGGCATCAAT
86725108 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
86725149 TCAAAATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:86725402 original size:9 final size:9
Alignment explanation
Indices: 86725376--86725416 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
86725366 AATAAGTAAG
*
86725376 CAAATGATG
1 CAAATGATA
86725385 CAAATGATA
1 CAAATGATA
86725394 CAAATGATA
1 CAAATGATA
* *
86725403 CAATTAATA
1 CAAATGATA
86725412 CAAAT
1 CAAAT
86725417 AAATAAACAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.54, C:0.12, G:0.10, T:0.24
Consensus pattern (9 bp):
CAAATGATA
Found at i:86726965 original size:44 final size:46
Alignment explanation
Indices: 86726910--86727020 Score: 140
Period size: 45 Copynumber: 2.5 Consensus size: 46
86726900 ATCCTACTCT
* * *
86726910 ACTGTAACTTCAGAGAGATAAGGAT-TG-TGACTTCGA-TCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGGATCTGCTAACTT-GAGTCTGCTCC
*
86726954 ACTGCAACTTCAGGGAGATAA-GATCTGCTAACTTTAGTCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGGATCTGCTAACTTGAGTCTGCTCC
*
86726999 ACTGCAACCTCAGGGAGATAAG
1 ACTGCAACTTCAGGGAGATAAG
86727021 ACTTGTAATT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
43 3 0.05
44 22 0.38
45 33 0.57
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (46 bp):
ACTGCAACTTCAGGGAGATAAGGATCTGCTAACTTGAGTCTGCTCC
Found at i:86727164 original size:44 final size:44
Alignment explanation
Indices: 86727116--86727253 Score: 111
Period size: 44 Copynumber: 3.1 Consensus size: 44
86727106 AGATCTACAA
86727116 TCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTT
1 TCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTT
* * * * * ** ** * **
86727160 TCTTC-GATCTGTT-CCACTGCAACTCTAGAGAGACAA-AATCTCCAA
1 TCTTCAG-CCTGTTACC-CTACTACT-TAGGGGGTTAAGGCT-TGCTT
86727205 TCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTT
1 TCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTT
86727249 TCTTC
1 TCTTC
86727254 GATTTGCTCC
Statistics
Matches: 63, Mismatches: 24, Indels: 14
0.62 0.24 0.14
Matches are distributed among these distances:
43 3 0.05
44 31 0.49
45 26 0.41
46 3 0.05
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (44 bp):
TCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTT
Found at i:86727223 original size:89 final size:88
Alignment explanation
Indices: 86726991--86727477 Score: 523
Period size: 89 Copynumber: 5.5 Consensus size: 88
86726981 CTAACTTTAG
* * * *
86726991 TCTGCTCCACTGCAACCTCAGGGAGATAAGA-CTTGTAAT-TTACAGCCTGTTACCCTACTGCTT
1 TCTGCTCCACTGCAA-CTTAGGGAGACAAGATC-TGCAATCTT-CAGCCTGTTACCCTACTACTT
* * *
86727054 AGGGGATTAAGGCTTAC-TTCTCCGA
63 AGGGGGTTAAGGCTTGCTTTCTTCGA
* * *** *
86727079 TTTGCTCCACTACTGTTTAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGG
1 TCTGCTCCACTGCAACTTAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGG
86727144 GGGTTAAGGCTTGCTTTCTTCGA
66 GGGTTAAGGCTTGCTTTCTTCGA
* * * *
86727167 TCTGTTCCACTGCAACTCTAGAGAGACAAAATCTCCAATCTTCAGCCTGTTACCCTACTACTTAG
1 TCTGCTCCACTGCAACT-TAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAG
86727232 GGGGTTAAGGCTTGCTTTCTTCGA
65 GGGGTTAAGGCTTGCTTTCTTCGA
* *** * * * * *
86727256 TTTGCTCCACTGCAAAAACAGGGAGACAAAATCTTCAATCTT-TGACGTGTTACCCTACTACTGA
1 TCTGCTCCACTGC-AACTTAGGGAGACAAGATCTGCAATCTTCAG-CCTGTTACCCTACTACTTA
** **
86727320 GGGGGTTAAGGCTCACCGTCTTCGA
64 GGGGGTTAAGGCTTGCTTTCTTCGA
** * * * * *
86727345 TCTATTCCACTGTAACTTCAGGAAGACAAGATCTGCAATCTTCGGCCTGTTACCCTACTATTTTG
1 TCTGCTCCACTGCAACTT-AGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAG
86727410 GGGGTTAAGGCTTGCTTTCTTCGA
65 GGGGTTAAGGCTTGCTTTCTTCGA
**
86727434 TCTGCTCTGCTGCAACTTCAGGGAGACAAGATCTGCAATCTTCA
1 TCTGCTCCACTGCAACTT-AGGGAGACAAGATCTGCAATCTTCA
86727478 CCAATATCGC
Statistics
Matches: 329, Mismatches: 62, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
87 51 0.16
88 35 0.11
89 240 0.73
90 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (88 bp):
TCTGCTCCACTGCAACTTAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGG
GGGTTAAGGCTTGCTTTCTTCGA
Done.