Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 264 of 311
Found at i:87610259 original size:19 final size:19
Alignment explanation
Indices: 87610232--87610268 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
87610222 AATAACAAAG
*
87610232 AGTGATTGGTTGATTTCCA
1 AGTGATTGGTTGACTTCCA
*
87610251 AGTGGTTGGTTGACTTCC
1 AGTGATTGGTTGACTTCC
87610269 GAATTAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.14, G:0.30, T:0.41
Consensus pattern (19 bp):
AGTGATTGGTTGACTTCCA
Found at i:87612076 original size:30 final size:30
Alignment explanation
Indices: 87612042--87612104 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
87612032 ACTTAACAAG
*
87612042 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAATAAAAACAAAATTAA
87612072 CAAATGCCTTTAAAATAAAAACAAAATTAA
1 CAAATGCCTTTAAAATAAAAACAAAATTAA
87612102 CAA
1 CAA
87612105 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAAAAACAAAATTAA
Found at i:87613537 original size:22 final size:22
Alignment explanation
Indices: 87613480--87613540 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
87613470 CTCCGATTAT
* *
87613480 TAGCACATTAGTGCTCTCCGTT
1 TAGCACTTTAGTGCTCTCCGTA
** *
87613502 TATTACATTT-GTGCTCTCTGTA
1 TAGCAC-TTTAGTGCTCTCCGTA
87613524 TAGCACTTTAGTGCTCT
1 TAGCACTTTAGTGCTCT
87613541 TTGTTTAATA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 3 0.10
22 25 0.83
23 2 0.07
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (22 bp):
TAGCACTTTAGTGCTCTCCGTA
Found at i:87616481 original size:18 final size:18
Alignment explanation
Indices: 87616460--87616495 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
87616450 AAACAACAAG
87616460 CTAATGTAACAATTAAAT
1 CTAATGTAACAATTAAAT
*
87616478 CTAATGTAACGATTAAAT
1 CTAATGTAACAATTAAAT
87616496 GTGTGGAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.33
Consensus pattern (18 bp):
CTAATGTAACAATTAAAT
Found at i:87616993 original size:15 final size:16
Alignment explanation
Indices: 87616944--87616996 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
87616934 TATTTAAAAC
87616944 ATTTTATATTTATATAA
1 ATTTTATA-TTATATAA
*
87616961 CTTGTTATATTA-AT-A
1 ATT-TTATATTATATAA
87616976 ATTTT-TATTATATAA
1 ATTTTATATTATATAA
87616991 ATTTTA
1 ATTTTA
87616997 ACATGTTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
13 5 0.17
14 4 0.13
15 9 0.30
16 2 0.07
17 5 0.17
18 5 0.17
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (16 bp):
ATTTTATATTATATAA
Found at i:87623294 original size:38 final size:39
Alignment explanation
Indices: 87623210--87623344 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
87623200 ACCAATATGG
*
87623210 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
87623249 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
87623287 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
87623328 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
87623345 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:87628584 original size:9 final size:9
Alignment explanation
Indices: 87628557--87628658 Score: 50
Period size: 9 Copynumber: 11.3 Consensus size: 9
87628547 ACATTTAATT
*
87628557 AATTTTTAA
1 AATTTTAAA
87628566 AATTTT-AA
1 AATTTTAAA
87628574 AATTTTAAA
1 AATTTTAAA
** *
87628583 AA-AATAAT
1 AATTTTAAA
*
87628591 TATTTT-AA
1 AATTTTAAA
87628599 AA-TTTAAA
1 AATTTTAAA
*
87628607 AATCATTAAA
1 AAT-TTTAAA
*
87628617 ATTATTTAAA
1 AAT-TTTAAA
*
87628627 AATTATAAA
1 AATTTTAAA
**
87628636 AATTATTTTTA
1 AA-T-TTTAAA
87628647 AATTTTAAA
1 AATTTTAAA
87628656 AAT
1 AAT
87628659 AATTAAATGT
Statistics
Matches: 67, Mismatches: 19, Indels: 14
0.67 0.19 0.14
Matches are distributed among these distances:
7 3 0.04
8 18 0.27
9 25 0.37
10 16 0.24
11 5 0.07
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (9 bp):
AATTTTAAA
Found at i:87628584 original size:17 final size:17
Alignment explanation
Indices: 87628560--87628636 Score: 50
Period size: 17 Copynumber: 4.5 Consensus size: 17
87628550 TTTAATTAAT
87628560 TTTTAAAATTTT-AAAA
1 TTTTAAAATTTTAAAAA
*** **
87628576 TTTTAAAAAAATAATTA
1 TTTTAAAATTTTAAAAA
87628593 TTTTAAAA-TTTAAAAA
1 TTTTAAAATTTTAAAAA
*
87628609 TCATTAAAATTATTTAAAAA
1 T-TTTAAAA-T-TTTAAAAA
*
87628629 TTATAAAA
1 TTTTAAAA
87628637 ATTATTTTTA
Statistics
Matches: 44, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
16 14 0.32
17 16 0.36
19 5 0.11
20 9 0.20
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (17 bp):
TTTTAAAATTTTAAAAA
Found at i:87628608 original size:8 final size:8
Alignment explanation
Indices: 87628561--87628639 Score: 50
Period size: 8 Copynumber: 9.2 Consensus size: 8
87628551 TTAATTAATT
*
87628561 TTTAAAAT
1 TTTAAAAA
*
87628569 TTTAAAAT
1 TTTAAAAA
87628577 TTTAAAAA
1 TTTAAAAA
** **
87628585 AATAATTA
1 TTTAAAAA
*
87628593 TTTTAAAA
1 TTTAAAAA
87628601 TTTAAAAA
1 TTTAAAAA
87628609 TCATTAAAATTA
1 T--TTAAAA--A
87628621 TTTAAAAA
1 TTTAAAAA
87628629 TTATAAAAA
1 TT-TAAAAA
87628638 TT
1 TT
87628640 ATTTTTAAAT
Statistics
Matches: 55, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
8 33 0.60
9 8 0.15
10 12 0.22
12 2 0.04
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (8 bp):
TTTAAAAA
Found at i:87628617 original size:10 final size:10
Alignment explanation
Indices: 87628602--87628665 Score: 53
Period size: 9 Copynumber: 6.5 Consensus size: 10
87628592 ATTTTAAAAT
*
87628602 TTAAAAATCA
1 TTAAAAATTA
87628612 TT-AAAATTA
1 TTAAAAATTA
87628621 TTTAAAAATTA
1 -TTAAAAATTA
87628632 -TAAAAATTA
1 TTAAAAATTA
**
87628641 TTTTTAAATT-
1 -TTAAAAATTA
*
87628651 TTAAAAATAA
1 TTAAAAATTA
87628661 TTAAA
1 TTAAA
87628666 TGTTGACATG
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
9 21 0.49
10 9 0.21
11 13 0.30
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:87628649 original size:20 final size:20
Alignment explanation
Indices: 87628600--87628658 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
87628590 TTATTTTAAA
* *
87628600 ATTTAAAAATCATTAAAATT
1 ATTTAAAAATTATAAAAATT
87628620 ATTTAAAAATTATAAAAATT
1 ATTTAAAAATTATAAAAATT
** *
87628640 ATTTTTAAATTTTAAAAAT
1 ATTTAAAAATTATAAAAAT
87628659 AATTAAATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTTAAAAATTATAAAAATT
Found at i:87629407 original size:19 final size:21
Alignment explanation
Indices: 87629370--87629410 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
87629360 TTTTTATACT
87629370 TTAATTTTGTTAATTAATTTTA
1 TTAATTTTGTTAA-TAATTTTA
87629392 TTAATTTT-TTAA-AATTTTA
1 TTAATTTTGTTAATAATTTTA
87629411 AATTTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTAATTTTGTTAATAATTTTA
Found at i:87631128 original size:21 final size:21
Alignment explanation
Indices: 87631104--87631147 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
87631094 GCGAAGTCTA
87631104 AGAAG-AATG-GAAGCCAAGAGG
1 AGAAGAAATGAGAAG-CAA-AGG
87631125 AGAAGAAATGAGAAGCAAAGG
1 AGAAGAAATGAGAAGCAAAGG
87631146 AG
1 AG
87631148 TTCGAGAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 10 0.48
22 7 0.33
23 4 0.19
ACGTcount: A:0.52, C:0.07, G:0.36, T:0.05
Consensus pattern (21 bp):
AGAAGAAATGAGAAGCAAAGG
Found at i:87637300 original size:29 final size:31
Alignment explanation
Indices: 87637244--87637301 Score: 84
Period size: 29 Copynumber: 1.9 Consensus size: 31
87637234 TTAATTATTT
* *
87637244 AATTATCAACAAATTTATATTTTAATCACAA
1 AATTATCAACAAAATTATAATTTAATCACAA
87637275 AATTAT-AA-AAAATTATAATTTAATCAC
1 AATTATCAACAAAATTATAATTTAATCAC
87637302 TTAATTATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 17 0.68
30 2 0.08
31 6 0.24
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (31 bp):
AATTATCAACAAAATTATAATTTAATCACAA
Found at i:87637307 original size:29 final size:29
Alignment explanation
Indices: 87637233--87637327 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
87637223 AAACTACATT
* * * *
87637233 TTTAATTATTTAATTATCAACAAATTTATAT
1 TTTAATCACTTAATTAT-AA-AAAATTATAA
**
87637264 TTTAATCACAAAATTATAAAAAATTATAA
1 TTTAATCACTTAATTATAAAAAATTATAA
** *
87637293 TTTAATCACTTAATTATTCAAAATTGATTA
1 TTTAATCACTTAATTATAAAAAATT-ATAA
87637323 TTTAA
1 TTTAA
87637328 GTCATATCTT
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
29 29 0.56
30 10 0.19
31 13 0.25
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.45
Consensus pattern (29 bp):
TTTAATCACTTAATTATAAAAAATTATAA
Found at i:87637765 original size:16 final size:16
Alignment explanation
Indices: 87637740--87637770 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87637730 TTTAATGAAA
87637740 TTTTAAAAAAAAATAT
1 TTTTAAAAAAAAATAT
*
87637756 TTTTATAAAAAAATA
1 TTTTAAAAAAAAATA
87637771 ATTAAAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TTTTAAAAAAAAATAT
Found at i:87638898 original size:27 final size:27
Alignment explanation
Indices: 87638857--87638909 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
87638847 ACCCGAACGG
*
87638857 GTCGAGCCTGTCAGGTAGGCACGACTA
1 GTCGAGCCTGACAGGTAGGCACGACTA
* *
87638884 GTCGCGCCTGACAGGTAGGCTCGACT
1 GTCGAGCCTGACAGGTAGGCACGACT
87638910 GCCACGTCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (27 bp):
GTCGAGCCTGACAGGTAGGCACGACTA
Found at i:87639484 original size:29 final size:31
Alignment explanation
Indices: 87639420--87639484 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
87639410 ATATATTATT
87639420 TTAAATATTTTTAAAAAATAATAATATAATA
1 TTAAATATTTTTAAAAAATAATAATATAATA
*
87639451 ATAAAT-TTTTTAAACGAAA-AA-AAT-TAATA
1 TTAAATATTTTTAAA--AAATAATAATATAATA
87639480 TTAAA
1 TTAAA
87639485 AAATTGTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
29 9 0.30
30 11 0.37
31 7 0.23
32 3 0.10
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (31 bp):
TTAAATATTTTTAAAAAATAATAATATAATA
Found at i:87640277 original size:30 final size:30
Alignment explanation
Indices: 87640241--87640299 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
87640231 TTAGTAAAAA
*
87640241 TAAAATTATACTTTAA-CTTCTTAAAAATGT
1 TAAAATTATAATTTAATCTT-TTAAAAATGT
87640271 TAAAATTATAATTTAATCTTTTAAAAATG
1 TAAAATTATAATTTAATCTTTTAAAAATG
87640300 AAATTTTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.89
31 3 0.11
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (30 bp):
TAAAATTATAATTTAATCTTTTAAAAATGT
Found at i:87643585 original size:48 final size:48
Alignment explanation
Indices: 87643514--87643609 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
87643504 AGAGGCCAAG
* * *
87643514 GGCTTTTCTTGTTGTTTCTGCTGCACTTTTTCTTTCTTTGAAACATTA
1 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTA
87643562 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTA
1 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTA
87643610 CTTTCATCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.14, C:0.21, G:0.15, T:0.51
Consensus pattern (48 bp):
GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTA
Found at i:87643829 original size:793 final size:791
Alignment explanation
Indices: 87641970--87644276 Score: 4013
Period size: 793 Copynumber: 2.9 Consensus size: 791
87641960 AGAGGCCAAG
*
87641970 GGCTTTTCTTGTTGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCCGAACT
1 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCCGAACT
* *
87642035 GCAATGATACCAATATAACTTAAAGCTGAAAAGTTACCACAAGATCTCGAATTTCTTGTAGATTG
66 GCAATGATACCAATATAACTT-AAGCTGAAAAGTTCCCACAAGATCTAGAATTTCTTGTAGATTG
* * *
87642100 TATATGAAACCCCAAATATAAGCATCGTAAGCGTAATATGGAGCCCATGTTACTTGGATGTGAGT
130 TATATGAAACCCCAAATATAAGCATCGTAAGCATAATATGCAGCCCATGTTACTTGGATATGAGT
* * *
87642165 ATTGGATACGGACATGTTATTCAGTATGCTTGATTTCTTCTCAGCTTTATCATATATTTAGAGCA
195 ATTGGATACGGACATGTGATTGAGTATGCTTGATTTCTTCTCAGTTTTATCATATATTTAGAGCA
*
87642230 TTATTGGAAACAAATACCGGATATCAAACTCTTAAAAGAAAGTTTTTCTTTCCCAAAGATATCCT
260 TTATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAG------T
** *
87642295 ATATCTAATATTTGATAGAGGTGGGGGAAAAGATTAGTCTACACTGAAGAACACTGCATAAAACA
319 ATATCTAATATTTGATAGAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATAAAACA
87642360 ACTCAAATATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGA
384 ACTCAAATATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGA
* * *
87642425 GATGCAATTGAGTATGCTCAAATCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACC
449 GATGCGATTGAGTATGCTCGATTCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACC
* *
87642490 TCTATACTCTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATATTTTAG
514 TCTATACTCTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATCTTTTAA
*
87642555 AAGAAAGTCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAACATAGATGTAG
579 AAGAAAGTCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAG
*
87642620 GGAGAAAAAGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTGCAACAG
644 GGAG-AAAAGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAG
*
87642685 TTGCTGCAAGCTGATTTCGATTTCAATGCAGAGGCCAAGGGCTTTTCTTCTTGTTTCTGCTTCAC
708 TTGCTGCAAGCTGATTTCGATTTCAATGCAGAGGCCAAGGGCTTTTCTTCTTGTTTCTGCTGCAC
87642750 TTCTTTCTTTGAAACATTA
773 TTCTTTCTTTGAAACATTA
* *
87642769 GGCTTTTCTTGTAGTTTCTCCTGCACTTTTTCTTCCTCTGAAACGTTACTTTCATCTTCCGAACT
1 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCCGAACT
* *
87642834 GCAATGATACCGATATAACTTAAGCTGAAAAGTTCCCACAAGTTCTAGAATTTCTTGTAGATTGT
66 GCAATGATACCAATATAACTTAAGCTGAAAAGTTCCCACAAGATCTAGAATTTCTTGTAGATTGT
* *
87642899 ATATGAAACCCCAACTATAAGCATCGTAAGCATAATATGCAGCCCATGTTACTTGGATATGAGCA
131 ATATGAAACCCCAAATATAAGCATCGTAAGCATAATATGCAGCCCATGTTACTTGGATATGAGTA
*
87642964 TTGGATACGGACATGTGATCGAGTATGCTTGATTTCTTCTCAGTTTTATCATATATTTAGAGCAT
196 TTGGATACGGACATGTGATTGAGTATGCTTGATTTCTTCTCAGTTTTATCATATATTTAGAGCAT
87643029 TATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAG-ATATCTA
261 TATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAGTATATCTA
87643093 ATATTTGATAGAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATAAAACAACTCAAA
326 ATATTTGATAGAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATAAAACAACTCAAA
* * * *
87643158 TATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGGGTGTCAAATATGGAAATTCGA
391 TATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGAGATGCGA
* * *
87643223 TTGAGCATGCTCGATTCTTCTTAGTTCTTTCATTTACTTGGAGCATCTTATTCATACCTCTATAC
456 TTGAGTATGCTCGATTCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACCTCTATAC
* * *
87643288 TCACTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAACCTTTTAAAAGAAGG
521 TCTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATCTTTTAAAAGAAAG
87643353 TCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAGGGAGAAA
586 TCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAGGGAGAAA
87643418 AGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAGTTGCTGCA
651 AGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAGTTGCTGCA
*
87643483 AGCTGATTTCGATTTCAATGCAGAGGCCAAGGGCTTTTCTTGTTGTTTCTGCTGCACTTTTTCTT
716 AGCTGATTTCGATTTCAATGCAGAGGCCAAGGGCTTTTCTTCTTGTTTCTGCTGCAC---TTCTT
87643548 TCTTTGAAACATTA
778 TCTTTGAAACATTA
*
87643562 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCTGAACT
1 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCCGAACT
*
87643627 GCAATGATACCAATATAACTTCAGCTGAAAAGTTCCCACAAGATCTAGAATTTCTTGTAGATTGT
66 GCAATGATACCAATATAACTTAAGCTGAAAAGTTCCCACAAGATCTAGAATTTCTTGTAGATTGT
*
87643692 ATATGAAACCCCAAATATAAGCATCGTAAGCATAATATGCAACCCATGTTACTTGGATATGAGTA
131 ATATGAAACCCCAAATATAAGCATCGTAAGCATAATATGCAGCCCATGTTACTTGGATATGAGTA
* *
87643757 TTGGATACGGACATGTGATTGAGTATGCTTGATTTCTTGTCAGTTTTCTCATATATTTAGAGCAT
196 TTGGATACGGACATGTGATTGAGTATGCTTGATTTCTTCTCAGTTTTATCATATATTTAGAGCAT
87643822 TATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAGATATGCTA
261 TATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCC--A-A-A-G-TA
* *
87643887 TATCTAATATTTGATAAAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATACAACAA
320 TATCTAATATTTGATAGAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATAAAACAA
*
87643952 CCCAAATATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGAG
385 CTCAAATATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGAG
87644017 ATGCGATTGAGTATGCTCGATTCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACCT
450 ATGCGATTGAGTATGCTCGATTCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACCT
*
87644082 CTATCCTCTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATCTTTTAAA
515 CTATACTCTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATCTTTTAAA
87644147 AGAAAGTCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAGG
580 AGAAAGTCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAGG
87644212 GAGAAGAAGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAGT
645 GAGAA-AAGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAGT
87644277 AGCACAACGC
Statistics
Matches: 1432, Mismatches: 65, Indels: 20
0.94 0.04 0.01
Matches are distributed among these distances:
790 122 0.09
791 310 0.22
793 320 0.22
795 1 0.00
796 1 0.00
797 1 0.00
798 219 0.15
799 82 0.06
800 317 0.22
801 59 0.04
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (791 bp):
GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCCGAACT
GCAATGATACCAATATAACTTAAGCTGAAAAGTTCCCACAAGATCTAGAATTTCTTGTAGATTGT
ATATGAAACCCCAAATATAAGCATCGTAAGCATAATATGCAGCCCATGTTACTTGGATATGAGTA
TTGGATACGGACATGTGATTGAGTATGCTTGATTTCTTCTCAGTTTTATCATATATTTAGAGCAT
TATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAGTATATCTA
ATATTTGATAGAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATAAAACAACTCAAA
TATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGAGATGCGA
TTGAGTATGCTCGATTCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACCTCTATAC
TCTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATCTTTTAAAAGAAAG
TCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAGGGAGAAA
AGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAGTTGCTGCA
AGCTGATTTCGATTTCAATGCAGAGGCCAAGGGCTTTTCTTCTTGTTTCTGCTGCACTTCTTTCT
TTGAAACATTA
Found at i:87644333 original size:30 final size:30
Alignment explanation
Indices: 87644271--87644340 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
87644261 CTGCAGTTCC
* * * **
87644271 AACAGTAGCACAACGCGCAGCTATAATTAG
1 AACAGTAGCACAAAGCCCAGCTACAACCAG
*
87644301 AACAGTAGCAGAAAGCCCAGCTACAACCAG
1 AACAGTAGCACAAAGCCCAGCTACAACCAG
*
87644331 AACAGGAGCA
1 AACAGTAGCA
87644341 TGATGGCCAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.43, C:0.26, G:0.21, T:0.10
Consensus pattern (30 bp):
AACAGTAGCACAAAGCCCAGCTACAACCAG
Found at i:87647452 original size:36 final size:36
Alignment explanation
Indices: 87647412--87647485 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
87647402 TCTTTCACCA
87647412 TTTATATTTCAAAATTCAAACTCAACTTTTTTATAT
1 TTTATATTTCAAAATTCAAACTCAACTTTTTTATAT
*
87647448 TTTATATTTCAAAATTTAAACTCAACTTTTTTATAT
1 TTTATATTTCAAAATTCAAACTCAACTTTTTTATAT
87647484 TT
1 TT
87647486 CAAAATTCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (36 bp):
TTTATATTTCAAAATTCAAACTCAACTTTTTTATAT
Found at i:87647495 original size:36 final size:36
Alignment explanation
Indices: 87647419--87647495 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
87647409 CCATTTATAT
* * *
87647419 TTCAAAATTCAAACTCAACTTTTTTATATTTTATAT
1 TTCAAAATTCAAACTCAACTTTTTTATATTTCAAAA
*
87647455 TTCAAAATTTAAACTCAACTTTTTTATATTTCAAAA
1 TTCAAAATTCAAACTCAACTTTTTTATATTTCAAAA
87647491 TTCAA
1 TTCAA
87647496 TGTCAACTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.47
Consensus pattern (36 bp):
TTCAAAATTCAAACTCAACTTTTTTATATTTCAAAA
Found at i:87654543 original size:18 final size:18
Alignment explanation
Indices: 87654520--87654555 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
87654510 TATATATTTT
87654520 ATTTTCTTCTATCAATAA
1 ATTTTCTTCTATCAATAA
* *
87654538 ATTTTCTTTTATTAATAA
1 ATTTTCTTCTATCAATAA
87654556 TAATAGCGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTTCTTCTATCAATAA
Found at i:87654780 original size:2 final size:2
Alignment explanation
Indices: 87654773--87654798 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
87654763 TTCTCACTCA
87654773 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
87654799 TTTTTTCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:87658473 original size:52 final size:52
Alignment explanation
Indices: 87658410--87658510 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
87658400 ATCCAATAAA
87658410 GCCAAATGTGTCTTTGTGATAATACAAGTTCTGGTCTGATAGAAAAAAGGAG
1 GCCAAATGTGTCTTTGTGATAATACAAGTTCTGGTCTGATAGAAAAAAGGAG
* * *** *
87658462 GCCAAGTGTGTCTTTGTGATACTATTTGTTCTGGTCTTATAGAAAAAAG
1 GCCAAATGTGTCTTTGTGATAATACAAGTTCTGGTCTGATAGAAAAAAG
87658511 ATTAGGGTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.34
Consensus pattern (52 bp):
GCCAAATGTGTCTTTGTGATAATACAAGTTCTGGTCTGATAGAAAAAAGGAG
Found at i:87659961 original size:9 final size:9
Alignment explanation
Indices: 87659947--87659971 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
87659937 TTTCAAATGT
87659947 TTTATTTTC
1 TTTATTTTC
87659956 TTTATTTTC
1 TTTATTTTC
87659965 TTTATTT
1 TTTATTT
87659972 AATTGTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTTC
Found at i:87665636 original size:23 final size:25
Alignment explanation
Indices: 87665610--87665658 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
87665600 TGAATTTTTA
*
87665610 TATTGTTATTG-TG-TTTTTACTGT
1 TATTATTATTGTTGATTTTTACTGT
*
87665633 TATTATTATTGTTGATTTTTATTGT
1 TATTATTATTGTTGATTTTTACTGT
87665658 T
1 T
87665659 TTTTGTTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 10 0.45
24 2 0.09
25 10 0.45
ACGTcount: A:0.16, C:0.02, G:0.14, T:0.67
Consensus pattern (25 bp):
TATTATTATTGTTGATTTTTACTGT
Found at i:87665699 original size:24 final size:25
Alignment explanation
Indices: 87665671--87665733 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
87665661 TTGTTGTTAG
87665671 TTATTATTATTAGTA-AAAAAAACC
1 TTATTATTATTAGTAGAAAAAAACC
* *
87665695 TTATTATTATT-GCTAGTAAAAAGCC
1 TTATTATTATTAG-TAGAAAAAAACC
*
87665720 TTATTATTGTTAGT
1 TTATTATTATTAGT
87665734 TATTATTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
23 1 0.03
24 13 0.39
25 18 0.55
26 1 0.03
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (25 bp):
TTATTATTATTAGTAGAAAAAAACC
Found at i:87665818 original size:39 final size:38
Alignment explanation
Indices: 87665695--87665824 Score: 140
Period size: 39 Copynumber: 3.4 Consensus size: 38
87665685 AAAAAAAACC
* * *
87665695 TTATTATTATTGCTAGTAAAAAGCCTTATTATTGTTAG
1 TTATTATTATTGTTAGTAAAAAACCCTATTATTGTTAG
87665733 TTATTATTATTGTTAGTAAAAAA--CTATTATTAGGATT-G
1 TTATTATTATTGTTAGTAAAAAACCCTATTATT--G-TTAG
* *
87665771 TTGCTTATTATTGTTAGTAAAAAACCCCAATTATTGTTAG
1 TT-ATTATTATTGTTAGTAAAAAA-CCCTATTATTGTTAG
*
87665811 TTATTATTGTTGTT
1 TTATTATTATTGTT
87665825 GATTTATATT
Statistics
Matches: 77, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
36 7 0.09
38 25 0.32
39 34 0.44
40 4 0.05
42 7 0.09
ACGTcount: A:0.32, C:0.07, G:0.13, T:0.48
Consensus pattern (38 bp):
TTATTATTATTGTTAGTAAAAAACCCTATTATTGTTAG
Found at i:87665924 original size:18 final size:18
Alignment explanation
Indices: 87665882--87665924 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
87665872 ATGTAAAGAA
* *
87665882 TGTTTTATTTTTTTTATG
1 TGTTTTATTTGTTATATG
**
87665900 TAATTTATTTGTTATATG
1 TGTTTTATTTGTTATATG
87665918 TGTTTTA
1 TGTTTTA
87665925 GGTTCATTAG
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.70
Consensus pattern (18 bp):
TGTTTTATTTGTTATATG
Found at i:87668532 original size:53 final size:53
Alignment explanation
Indices: 87668337--87668544 Score: 197
Period size: 55 Copynumber: 3.8 Consensus size: 53
87668327 ATTAGGGTTT
* * * *
87668337 AAGGATACCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTC-TAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * **
87668392 AAGGATACCATGTAAGACCATGTCAATACAAGGCATTAATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
87668447 AA-AAGTCCCATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGA-TACCATGTAAGACCATGTC-AAGACATGGCATTGGTAAGTTCATAAGGC
* * *
87668500 AAGGATACCATGTAAGACCATATCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
87668545 TCAAAAGGAC
Statistics
Matches: 123, Mismatches: 23, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
52 2 0.02
53 43 0.35
54 11 0.09
55 67 0.54
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:87668804 original size:16 final size:16
Alignment explanation
Indices: 87668783--87668813 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87668773 ATAAATTTGA
87668783 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
87668799 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
87668814 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:87671237 original size:520 final size:520
Alignment explanation
Indices: 87670252--87671285 Score: 1649
Period size: 520 Copynumber: 2.0 Consensus size: 520
87670242 GATGTCCCCA
* * * * *
87670252 ATGATATTAATGATGAAGACGTGAATGTCGATGGAAACATTAACGCATTTTTGGTCGGGAATTAT
1 ATGATATTAACGATGAAGACGTGAATGTCGATGGAAACATTAACGCATCTTCGATAGGGAATTAT
* * *
87670317 ATGCGACGTATTGTGATACATAATAATCCTAGGCCACACACGTCGCTTATAGACCCTGATGCGGC
66 ATGCGACGTATTGTGATACACAATAATCCTAGGCCACACACGTCGCTAATAGACCCTGACGCGGC
* * * * * *
87670382 GCATGTAGCTGAGTTCTCAGAGTACCCTGAAATACTTTCCGTTCACCGACTGGCCTTAAATTTTG
131 GCATGTAGCTGAGTTCCCAAAGTACCCTGAAATACGTTCCGCTCACCGACTGGCCATAAATTTCG
* * *
87670447 ATCCTAAGGAGTTTTTCGTAGGCCAGAGATTCAAAAGTAAAGAAGAGCGAGTATTTGCTATTAAG
196 ATCCTAAGGAGTTGTTCGTAGGCCAGAAATTCAAAAGTAAAGAAGAGCGAGTATTTACTATTAAG
* *
87670512 CGGTATAGCATGAATAAATCAATGGATTACAAAGTTGCAGTGTCTAAATCAACATTATATATTAG
261 CGGTATAGCATAAATAAATCAATGGATTACAAAGTTACAGTGTCTAAATCAACATTATATATTAG
**
87670577 GGAGTGTTGGAAGTCAAGGAAGGCTGCAATTGGCGGGTACGAGCTGTATTTATTCAAATTTTGTA
326 GGAGTGTTGGAAGTCAAGGAAGGCTGCAATTGGCGGGTACGAGCTGTATTTATTCAAATTTCATA
* * * * *
87670642 GATGTGGGAGATACGCAAATGTGTTGGGCCTCACATATGTACATCAACATGTATGATCGAAGATC
391 GATGTGGGAGATACACAAATGTGTTAGGCCTCACACATGCACATCAACATGTATGATAGAAGATC
*
87670707 ATCGAAAACTTGATTCTAAAACTATCTGTACGTGTATCATGCCAATGGTGAAGGACATGCCGACG
456 ATCAAAAACTTGATTCTAAAACTATCTGTACGTGTATCATGCCAATGGTGAAGGACATGCCGACG
* *
87670772 ATGATATTAACGATGAAGATGTGAATGTCGATGGAAACATTAACGCGTCTTCGATAGGGAATTAT
1 ATGATATTAACGATGAAGACGTGAATGTCGATGGAAACATTAACGCATCTTCGATAGGGAATTAT
* * *
87670837 ATGTGACGTATTGTGATACACAATAATCCTGGGCCACACACGTTGCTAATAGACCCTGACGCGGC
66 ATGCGACGTATTGTGATACACAATAATCCTAGGCCACACACGTCGCTAATAGACCCTGACGCGGC
* * *
87670902 GCATGTAGCTGAGTTCCCAAAGTACCTTGAAATA-GTTCCTGCTCACCGGCTGGTCATAAATTTC
131 GCATGTAGCTGAGTTCCCAAAGTACCCTGAAATACGTTCC-GCTCACCGACTGGCCATAAATTTC
* * * *
87670966 GATCCTGAGGAGTTGTTCGTAGGCCA-AAATTCAAAAGTAAATAAGAGCGTGTGTTTACTATTAA
195 GATCCTAAGGAGTTGTTCGTAGGCCAGAAATTCAAAAGTAAAGAAGAGCGAGTATTTACTATTAA
* *
87671030 GTGGTATAGCATAAATAAATCAATGGATTACAAAGTTACAGTGTCTAAATCGACATTATATATTA
260 GCGGTATAGCATAAATAAATCAATGGATTACAAAGTTACAGTGTCTAAATCAACATTATATATTA
87671095 GGGAGTGTTGGAAGTCAACGGAAGGCTGCAATTGGCGGGTACGAGCTGTATTTATTCAAATTTCA
325 GGGAGTGTTGGAAGTCAA-GGAAGGCTGCAATTGGCGGGTACGAGCTGTATTTATTCAAATTTCA
* *
87671160 TAGATGTGGGAGATACACAAATTTGTTAGGCCTCACACGTGCACATCAACATGTATGATAGAAGA
389 TAGATGTGGGAGATACACAAATGTGTTAGGCCTCACACATGCACATCAACATGTATGATAGAAGA
87671225 TCATCAAAAACTTGATTCTAAAACTATCTGTACGTGTATCATGCCAATGGTGAAGGACATG
454 TCATCAAAAACTTGATTCTAAAACTATCTGTACGTGTATCATGCCAATGGTGAAGGACATG
87671286 TAGACCATTA
Statistics
Matches: 469, Mismatches: 43, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
519 116 0.25
520 353 0.75
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (520 bp):
ATGATATTAACGATGAAGACGTGAATGTCGATGGAAACATTAACGCATCTTCGATAGGGAATTAT
ATGCGACGTATTGTGATACACAATAATCCTAGGCCACACACGTCGCTAATAGACCCTGACGCGGC
GCATGTAGCTGAGTTCCCAAAGTACCCTGAAATACGTTCCGCTCACCGACTGGCCATAAATTTCG
ATCCTAAGGAGTTGTTCGTAGGCCAGAAATTCAAAAGTAAAGAAGAGCGAGTATTTACTATTAAG
CGGTATAGCATAAATAAATCAATGGATTACAAAGTTACAGTGTCTAAATCAACATTATATATTAG
GGAGTGTTGGAAGTCAAGGAAGGCTGCAATTGGCGGGTACGAGCTGTATTTATTCAAATTTCATA
GATGTGGGAGATACACAAATGTGTTAGGCCTCACACATGCACATCAACATGTATGATAGAAGATC
ATCAAAAACTTGATTCTAAAACTATCTGTACGTGTATCATGCCAATGGTGAAGGACATGCCGACG
Found at i:87673401 original size:32 final size:33
Alignment explanation
Indices: 87673364--87673439 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
87673354 AGTGGAGTAT
*
87673364 TGCGGTGGATACGAG-CCAGAGTAGTGTTGTAC
1 TGCGGTGGATACGAGTCCAGAGAAGTGTTGTAC
* * *
87673396 TGCGGTGGATACGGGTCGAGAGAAGTGTTGTGC
1 TGCGGTGGATACGAGTCCAGAGAAGTGTTGTAC
*
87673429 TGCGATGGATA
1 TGCGGTGGATA
87673440 TGACCCAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
32 14 0.37
33 24 0.63
ACGTcount: A:0.21, C:0.13, G:0.41, T:0.25
Consensus pattern (33 bp):
TGCGGTGGATACGAGTCCAGAGAAGTGTTGTAC
Found at i:87675950 original size:148 final size:145
Alignment explanation
Indices: 87675675--87676357 Score: 927
Period size: 148 Copynumber: 4.6 Consensus size: 145
87675665 TTTTTTTCGG
* *
87675675 TGATTTTGGCCCTTTGCTTGTATTTTTCTTAATTCTCGGATTTTATTTTTTAAAATATACCATTT
1 TGATTTTGGCCCTTTGTTTGTATTTTT-TT-A-----GGATTTTATTTTTTAAAATATACTATTT
* * * *
87675740 TCATA-TTT-TATTTTTATATTATTTTAGTATATAATATTTCAAATGTATTATTTTAGTGTTTTT
59 TCGTATTTTATATTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTT
*
87675803 TATATTAATTTAGCAAAAAAATCC
124 TATATTAATTTAG-TAAAAAA-CC
* *
87675827 TGATTTTGACCCTTTGTTTGTATTTTTTTAGGATTTTATTTTCTAAAATATACTATTTTCGTATT
1 TGATTTTGGCCCTTTGTTTGTATTTTTTTAGGATTTTATTTTTTAAAATATACTATTTTCGTATT
87675892 TTATATTTTTATATTATTTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATT
66 TTATATTTTTATATTA-TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATT
87675957 AATTTAGTAAAAAACC
130 AATTTAGTAAAAAACC
87675973 TTGAATTTTGGCCCTTTGTTTGTATTTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTT
1 -TG-ATTTTGGCCCTTTGTTTGTATTTTTTTA-----GGATTTTATTTTTTAAAATATACTATTT
*
87676038 TCGTATTTTAT-TTTTTATACTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTA-TTTT
59 TCGTATTTTATATTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTT
87676101 TATATTAATTTAGTAAAAAACCC
124 TATATTAATTTAGTAAAAAA-CC
* * *
87676124 TGATTTTGGCCATTTGTTTATATTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTTTCG
1 TGATTTTGGCCCTTTGTTTGTA--TTTT-TT-TAGGATTTTATTTTTTAAAATATACTATTTTCG
* *
87676189 TA-TTT-TATTTTTATATTATTTTAGTACATAATGTTTCAAGTGTATTATTTTAGTGTTTTTTTA
62 TATTTTATATTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGT-ATTTTTTA
87676252 TATTAATTTAGTAAAAAACAC
126 TATTAATTTAGTAAAAAAC-C
* *
87676273 TGATTTTGGCCCTTTATTTGTATTTTTTT---ATTTTATTTTTTAAAATATACTATTTTCATATT
1 TGATTTTGGCCCTTTGTTTGTATTTTTTTAGGATTTTATTTTTTAAAATATACTATTTTCGTATT
87676335 TTAT-TTTTTATATTATTTTAGTA
66 TTATATTTTTATATTATTTTAGTA
87676358 AAAACCCGCC
Statistics
Matches: 488, Mismatches: 22, Indels: 51
0.87 0.04 0.09
Matches are distributed among these distances:
142 30 0.06
143 22 0.05
144 1 0.00
145 31 0.06
146 8 0.02
147 73 0.15
148 113 0.23
149 62 0.13
150 27 0.06
151 45 0.09
152 37 0.08
153 39 0.08
ACGTcount: A:0.27, C:0.07, G:0.08, T:0.57
Consensus pattern (145 bp):
TGATTTTGGCCCTTTGTTTGTATTTTTTTAGGATTTTATTTTTTAAAATATACTATTTTCGTATT
TTATATTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTA
ATTTAGTAAAAAACC
Found at i:87676050 original size:298 final size:297
Alignment explanation
Indices: 87675675--87676357 Score: 1016
Period size: 298 Copynumber: 2.3 Consensus size: 297
87675665 TTTTTTTCGG
* * *
87675675 TGATTTTGGCCCTTTGCTTGTATTTTTCTTAATTCTCGGATTTTATTTTTTAAAATATACCATTT
1 TGATTTTGGCCCTTTGTTTGTATTTTT-TT-ATTCTTGGATTTTATTTTTTAAAATATACTATTT
* *
87675740 TCATATTTTA-TTTTTATATTATTTTAGTATATAATATTTCAAATGTATTATTTTAGTGTTTTTT
64 TCATATTTTATTTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGT-ATTTTT
* * *
87675804 ATATTAATTTAGCAAAAAAATCCTGATTTTGACCCTTTGTTTGTA-TTTT-TT-TAGGATTTTAT
128 ATATTAATTTAG-AAAAAAACCCTGATTTTGACCATTTGTTTATATTTTTATTCTAGGATTTTAT
87675866 TTTCTAAAATATACTATTTTCGTATTTTATATTTTTATATTATTTTTAGTACATAATGTTTCAAA
192 TTTCTAAAATATACTATTTTCGTA-TTT-TATTTTTATATTA-TTTTAGTACATAATGTTTCAAA
87675931 TGTATTATTTTAGT-ATTTTTTATATTAATTTAGTAAAAAAC-C
254 TGTATTATTTTAGTGATTTTTTATATTAATTTAGTAAAAAACAC
87675973 TTGAATTTTGGCCCTTTGTTTGTATTTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTT
1 -TG-ATTTTGGCCCTTTGTTTGTATTTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTT
* * *
87676038 TCGTATTTTATTTTTTATACTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTA
64 TCATATTTTATTTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTATTTTTA
* * *
87676103 TATTAATTTAGTAAAAAACCCTGATTTTGGCCATTTGTTTATATTTTTTATTCTTGGATTTTATT
129 TATTAATTTAGAAAAAAACCCTGATTTTGACCATTTGTTTATA-TTTTTATTCTAGGATTTTATT
* *
87676168 TTTTAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAGTACATAATGTTTCAAGTGTA
193 TTCTAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAGTACATAATGTTTCAAATGTA
*
87676233 TTATTTTAGTGTTTTTTTATATTAATTTAGTAAAAAACAC
258 TTATTTTAGTGATTTTTTATATTAATTTAGTAAAAAACAC
*
87676273 TGATTTTGGCCCTTTATTTGTA----TTT-TT-TT--ATTTTATTTTTTAAAATATACTATTTTC
1 TGATTTTGGCCCTTTGTTTGTATTTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTTTC
87676330 ATATTTTATTTTTTATATTATTTTAGTA
66 ATATTTTATTTTTTATATTATTTTAGTA
87676358 AAAACCCGCC
Statistics
Matches: 356, Mismatches: 20, Indels: 25
0.89 0.05 0.06
Matches are distributed among these distances:
290 54 0.15
292 2 0.01
293 2 0.01
294 3 0.01
297 27 0.08
298 112 0.31
299 93 0.26
300 30 0.08
301 33 0.09
ACGTcount: A:0.27, C:0.07, G:0.08, T:0.57
Consensus pattern (297 bp):
TGATTTTGGCCCTTTGTTTGTATTTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTTTC
ATATTTTATTTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTATTTTTATA
TTAATTTAGAAAAAAACCCTGATTTTGACCATTTGTTTATATTTTTATTCTAGGATTTTATTTTC
TAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTA
TTTTAGTGATTTTTTATATTAATTTAGTAAAAAACAC
Found at i:87676309 original size:13 final size:14
Alignment explanation
Indices: 87676285--87676313 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
87676275 ATTTTGGCCC
87676285 TTTATTTGTATTTT
1 TTTATTTGTATTTT
87676299 TTTATTT-TATTTT
1 TTTATTTGTATTTT
87676312 TT
1 TT
87676314 AAAATATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (14 bp):
TTTATTTGTATTTT
Found at i:87677766 original size:39 final size:40
Alignment explanation
Indices: 87677712--87677789 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 40
87677702 TAAAAAAATA
*
87677712 CTTTTTTTTCTTCTTTTTC-TTT-CTTTTTCCTTCCCTCC
1 CTTTTTTTTCCTCTTTTTCTTTTCCTTTTTCCTTCCCTCC
*
87677750 CTTTTTTTCTCCTCTTTTTCTTTTCCTTTTTTCTTCCCTC
1 CTTTTTTT-TCCTCTTTTTCTTTTCCTTTTTCCTTCCCTC
87677790 ACCAGTGCCG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
38 8 0.23
39 10 0.29
40 3 0.09
41 14 0.40
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (40 bp):
CTTTTTTTTCCTCTTTTTCTTTTCCTTTTTCCTTCCCTCC
Found at i:87680742 original size:53 final size:53
Alignment explanation
Indices: 87680661--87680811 Score: 198
Period size: 53 Copynumber: 2.8 Consensus size: 53
87680651 TTTACACGGT
*
87680661 TCACATATCATACCGA-AGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATA-CCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
87680716 TCACATTATACCGATACCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATACCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** * *
87680769 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATACCATAGCCCAGCTATGGTCTTATACGG
87680812 GCACACTTAT
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
52 1 0.01
53 79 0.90
54 2 0.02
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATACCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:87682840 original size:22 final size:24
Alignment explanation
Indices: 87682792--87682837 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
87682782 GTAAGGCCCT
*
87682792 TTCTCTTGCTGCTGTTCAATTTCCG
1 TTCTCTTGCTGCTGGT-AATTTCCG
87682817 TTCTCTTGCTGCTGGT-ATTTC
1 TTCTCTTGCTGCTGGTAATTTC
87682838 GTTTCCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
25 15 0.75
ACGTcount: A:0.07, C:0.26, G:0.17, T:0.50
Consensus pattern (24 bp):
TTCTCTTGCTGCTGGTAATTTCCG
Found at i:87685309 original size:46 final size:46
Alignment explanation
Indices: 87685259--87685431 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
87685249 TGGTTGAGCA
87685259 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
87685305 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
87685350 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
87685398 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
87685432 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:87685415 original size:93 final size:93
Alignment explanation
Indices: 87685256--87685426 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
87685246 GGATGGTTGA
* *
87685256 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87685321 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
87685349 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87685414 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
87685427 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:87687682 original size:22 final size:20
Alignment explanation
Indices: 87687642--87687690 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
87687632 CAATTTAAAA
87687642 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
* *
87687662 TATATAAATTTATTAATATA
1 TATAAAAATTTATTAATATG
*
87687682 TGTAAAAAT
1 TATAAAAAT
87687691 AACTTTTACG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:87693780 original size:109 final size:109
Alignment explanation
Indices: 87693589--87693809 Score: 442
Period size: 109 Copynumber: 2.0 Consensus size: 109
87693579 AGAAGGTAAT
87693589 CTCTATGAAAATTTTCCAAGGAAAAACTTATATGGATTGAAGTTGGTTGACTTTGCAAAAAAATA
1 CTCTATGAAAATTTTCCAAGGAAAAACTTATATGGATTGAAGTTGGTTGACTTTGCAAAAAAATA
87693654 AAATGATAAGCAATACTTGGTAATATGCAATACATCCTATGTTA
66 AAATGATAAGCAATACTTGGTAATATGCAATACATCCTATGTTA
87693698 CTCTATGAAAATTTTCCAAGGAAAAACTTATATGGATTGAAGTTGGTTGACTTTGCAAAAAAATA
1 CTCTATGAAAATTTTCCAAGGAAAAACTTATATGGATTGAAGTTGGTTGACTTTGCAAAAAAATA
87693763 AAATGATAAGCAATACTTGGTAATATGCAATACATCCTATGTTA
66 AAATGATAAGCAATACTTGGTAATATGCAATACATCCTATGTTA
87693807 CTC
1 CTC
87693810 ACTCGGATGT
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 112 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (109 bp):
CTCTATGAAAATTTTCCAAGGAAAAACTTATATGGATTGAAGTTGGTTGACTTTGCAAAAAAATA
AAATGATAAGCAATACTTGGTAATATGCAATACATCCTATGTTA
Found at i:87694586 original size:117 final size:117
Alignment explanation
Indices: 87694347--87694578 Score: 371
Period size: 117 Copynumber: 2.0 Consensus size: 117
87694337 TTTACTGAAT
*
87694347 TATTATCATTCATTTTGAGTATGCAGAAAGCTGTATGATACAAAAGCACTGTAACTTTTGCAAAT
1 TATTATCATTCATTTTGAGTATGCAGAAAACTGTATGATACAAAAGCACTGTAACTTTTGCAAAT
87694412 TCAAGTGATCCGTTTATTAAAGAATAAACTAATTCCAACCCAAATTAATTATA
66 TCAAGTGA-CCGTTTATTAAAGAATAAACTAATTCCAACCCAAATTAATTATA
* * *
87694465 -ATTATCATTCATTTTGAGTATGCAGAAAACTGTATGATACAAAAGCACTTTTACTTTTGC-CAT
1 TATTATCATTCATTTTGAGTATGCAGAAAACTGTATGATACAAAAGCACTGTAACTTTTGCAAAT
* * *
87694528 TCAGGTG-CTGTTTATTAAAGAATAAACTAATTCCAACCCCAATTAATTATA
66 TCAAGTGACCGTTTATTAAAGAATAAACTAATTCCAACCCAAATTAATTATA
87694579 ACTATTATGA
Statistics
Matches: 107, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
114 42 0.39
116 8 0.07
117 57 0.53
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.35
Consensus pattern (117 bp):
TATTATCATTCATTTTGAGTATGCAGAAAACTGTATGATACAAAAGCACTGTAACTTTTGCAAAT
TCAAGTGACCGTTTATTAAAGAATAAACTAATTCCAACCCAAATTAATTATA
Found at i:87700305 original size:29 final size:30
Alignment explanation
Indices: 87700246--87700303 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
87700236 TCCGAGCCTT
*
87700246 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
87700276 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
87700304 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:87700533 original size:13 final size:13
Alignment explanation
Indices: 87700515--87700546 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
87700505 TTTCCAGCAA
87700515 TTATGAATTTATT
1 TTATGAATTTATT
87700528 TTATGAATTTATT
1 TTATGAATTTATT
*
87700541 TGATGA
1 TTATGA
87700547 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:87700760 original size:49 final size:50
Alignment explanation
Indices: 87700646--87700880 Score: 260
Period size: 50 Copynumber: 4.6 Consensus size: 50
87700636 GGTAAAGAGA
* * *
87700646 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--GACAGG
*
87700702 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGA-AGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGACAGG
* * *
87700751 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGACAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGACAGG
* * * * **
87700801 TCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACGAGAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACGA-CAGG
87700852 T-CCATGTAAGACCATGTCTGGGACATGGC
1 TCCCATGTAAGACCATGTCTGGGACATGGC
87700881 TTTGGCATGT
Statistics
Matches: 158, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
49 46 0.29
50 69 0.44
51 2 0.01
52 1 0.01
53 3 0.02
55 2 0.01
56 35 0.22
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGACAGG
Found at i:87700834 original size:99 final size:101
Alignment explanation
Indices: 87700642--87700888 Score: 331
Period size: 99 Copynumber: 2.4 Consensus size: 101
87700632 TTTGGGTAAA
*
87700642 GAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCCC
1 GAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGACAGGTCCCC
* *
87700707 TGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GAC
63 TATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCAC
* * *
87700746 GAAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGACAGGTCCCCTA
1 G-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGACAGGTCCCCTA
87700808 TAAGACCATGTCTGGGACATGGCATGGGCACCATCAC
65 TAAGACCATGTCTGGGACATGGCATGGGCACCATCAC
* *
87700845 GAGAACATCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 GAGATC--CCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
87700889 GTTATTATCA
Statistics
Matches: 129, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
98 4 0.03
99 48 0.37
100 36 0.28
104 3 0.02
105 38 0.29
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (101 bp):
GAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGACAGGTCCCCTAT
AAGACCATGTCTGGGACATGGCATGGGCACCATCAC
Found at i:87704016 original size:21 final size:21
Alignment explanation
Indices: 87703992--87704081 Score: 123
Period size: 21 Copynumber: 4.3 Consensus size: 21
87703982 CCATCACTGT
87703992 TGCCTCTGCCTCCCTCGCTAG-
1 TGCCTCTGCCTCCCTCGCT-GC
87704013 TGCCTCTGCCTCCCTCGCTGC
1 TGCCTCTGCCTCCCTCGCTGC
87704034 TGCCGT-TGCCTCCCTCGCTGC
1 TGCC-TCTGCCTCCCTCGCTGC
*
87704055 TG-CTGCTGCCTCCCTCTCTGC
1 TGCCT-CTGCCTCCCTCGCTGC
87704076 TGCCTC
1 TGCCTC
87704082 CGCTCTAAGT
Statistics
Matches: 63, Mismatches: 1, Indels: 10
0.85 0.01 0.14
Matches are distributed among these distances:
19 1 0.02
20 2 0.03
21 57 0.90
22 3 0.05
ACGTcount: A:0.01, C:0.49, G:0.20, T:0.30
Consensus pattern (21 bp):
TGCCTCTGCCTCCCTCGCTGC
Found at i:87704077 original size:15 final size:16
Alignment explanation
Indices: 87704057--87704087 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
87704047 CTCGCTGCTG
87704057 CTGCTGCCTCC-CTCT
1 CTGCTGCCTCCGCTCT
87704072 CTGCTGCCTCCGCTCT
1 CTGCTGCCTCCGCTCT
87704088 AAGTTGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.00, C:0.52, G:0.16, T:0.32
Consensus pattern (16 bp):
CTGCTGCCTCCGCTCT
Found at i:87704523 original size:13 final size:14
Alignment explanation
Indices: 87704496--87704524 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
87704486 GGATGAATCG
87704496 AATTAAACAATTAT
1 AATTAAACAATTAT
87704510 AATTAAAC-ATTAT
1 AATTAAACAATTAT
87704523 AA
1 AA
87704525 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:87704713 original size:17 final size:16
Alignment explanation
Indices: 87704691--87704729 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
87704681 AAAATATTAT
87704691 TTAATAGTAGAAAGTAA
1 TTAATAGTAGAAAG-AA
* *
87704708 TTAATATTTGAAAGAA
1 TTAATAGTAGAAAGAA
87704724 TTAATA
1 TTAATA
87704730 AATTCATAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (16 bp):
TTAATAGTAGAAAGAA
Found at i:87704934 original size:9 final size:9
Alignment explanation
Indices: 87704913--87705028 Score: 71
Period size: 9 Copynumber: 13.1 Consensus size: 9
87704903 TATGTATTAC
*
87704913 GTAAGTTAA
1 GTAAGTTAT
87704922 GTAAGCTT-T
1 GTAAG-TTAT
87704931 GTAAGTTAT
1 GTAAGTTAT
87704940 GTAAGTTAT
1 GTAAGTTAT
* *
87704949 GTTA-TGAT
1 GTAAGTTAT
* *
87704957 ATACATTTAT
1 GTA-AGTTAT
*
87704967 GTAAGGTAT
1 GTAAGTTAT
87704976 GTAAGTTAT
1 GTAAGTTAT
* *
87704985 GATATGATAT
1 G-TAAGTTAT
* *
87704995 AT-ATTTAT
1 GTAAGTTAT
87705003 GT-A-TTAT
1 GTAAGTTAT
*
87705010 GTAAGTTGT
1 GTAAGTTAT
87705019 GTAAGTTAT
1 GTAAGTTAT
87705028 G
1 G
87705029 ATATGATATA
Statistics
Matches: 81, Mismatches: 19, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
7 6 0.07
8 12 0.15
9 50 0.62
10 13 0.16
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:87704977 original size:36 final size:36
Alignment explanation
Indices: 87704930--87705005 Score: 125
Period size: 36 Copynumber: 2.1 Consensus size: 36
87704920 AAGTAAGCTT
* *
87704930 TGTAAGTTATGTAAGTTATGTTATGATATACATTTA
1 TGTAAGGTATGTAAGTTATGATATGATATACATTTA
*
87704966 TGTAAGGTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGGTATGTAAGTTATGATATGATATACATTTA
87705002 TGTA
1 TGTA
87705006 TTATGTAAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.46
Consensus pattern (36 bp):
TGTAAGGTATGTAAGTTATGATATGATATACATTTA
Found at i:87705022 original size:43 final size:43
Alignment explanation
Indices: 87704963--87705139 Score: 201
Period size: 43 Copynumber: 3.9 Consensus size: 43
87704953 TGATATACAT
* *
87704963 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
*
87705006 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATATA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
* *
87705049 TTTTGTAAGGTATATAAGTTATGTAAGTTATTATATGATATATATTTATGTA
1 TTATGTAA-G--T-T--G---TGTAAGTTATGATATGATATATATTTATGTA
* * *
87705101 TTATGTAAGTTTTGTAAGTTTTTATATGATATATATTTA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTA
87705140 ACATTAAGAT
Statistics
Matches: 116, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
43 73 0.63
44 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 2 0.02
51 1 0.01
52 36 0.31
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (43 bp):
TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
Found at i:87705090 original size:95 final size:95
Alignment explanation
Indices: 87704968--87705139 Score: 299
Period size: 95 Copynumber: 1.8 Consensus size: 95
87704958 TACATTTATG
87704968 TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
1 TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
87705033 GATATATATTTATATATTTTGTAAGGTATA
66 GATATATATTTATATATTTTGTAAGGTATA
* * * * *
87705063 TAAGTTATGTAAGTTATTATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTTTTATAT
1 TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
87705128 GATATATATTTA
66 GATATATATTTA
87705140 ACATTAAGAT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 72 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (95 bp):
TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
GATATATATTTATATATTTTGTAAGGTATA
Found at i:87705119 original size:52 final size:52
Alignment explanation
Indices: 87705007--87705120 Score: 165
Period size: 52 Copynumber: 2.2 Consensus size: 52
87704997 ATTTATGTAT
* *
87705007 TATGTAAGTTGTGTAAGTTATGATATGATATATATTTATATATTTTGTAAGG
1 TATGTAAGTTATGTAAGTTATGATATGATATATATTTATATATTATGTAAGG
* * * *
87705059 TATATAAGTTATGTAAGTTATTATATGATATATATTTATGTATTATGTAAGT
1 TATGTAAGTTATGTAAGTTATGATATGATATATATTTATATATTATGTAAGG
*
87705111 TTTGTAAGTT
1 TATGTAAGTT
87705121 TTTATATGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (52 bp):
TATGTAAGTTATGTAAGTTATGATATGATATATATTTATATATTATGTAAGG
Found at i:87705205 original size:11 final size:11
Alignment explanation
Indices: 87705185--87705216 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
87705175 ATTATTTTAA
*
87705185 TTAAATAAATT
1 TTAAAAAAATT
87705196 TTAAAAAAATT
1 TTAAAAAAATT
87705207 TTAAAAAAAT
1 TTAAAAAAAT
87705217 CACATGAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TTAAAAAAATT
Found at i:87714135 original size:13 final size:13
Alignment explanation
Indices: 87714115--87714147 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
87714105 TGTATATGGT
87714115 AAAAATTTATT-A
1 AAAAATTTATTCA
87714127 AACAAATTTATTCA
1 AA-AAATTTATTCA
87714141 AAAAATT
1 AAAAATT
87714148 ACAAGTAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 2 0.11
13 14 0.74
14 3 0.16
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAAATTTATTCA
Found at i:87716374 original size:52 final size:53
Alignment explanation
Indices: 87716223--87716378 Score: 197
Period size: 54 Copynumber: 2.9 Consensus size: 53
87716213 GGACCATGGC
* * *
87716223 AACAAGTGATAAGCGATATCTGTATAAGACCATAGCTAGGCTATGGCATCGGAA
1 AACAAGTGATAAGTGAT-TCTGTATAAGACCATAGCTGGGCTATGGCATCAGAA
* *
87716277 AACAAGTGATAAGTGATTCCCGTATAAGACCATAGCTGGGCTATGGCATCAGAG
1 AACAAGTGATAAGTGATT-CTGTATAAGACCATAGCTGGGCTATGGCATCAGAA
* * * * *
87716331 AA-AAGTGATAAGTGCTTCTGTGTAAGACCATATCCGGGATATGGCATC
1 AACAAGTGATAAGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATC
87716379 GATATGATAT
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
52 26 0.29
53 15 0.17
54 49 0.54
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (53 bp):
AACAAGTGATAAGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATCAGAA
Found at i:87726331 original size:17 final size:17
Alignment explanation
Indices: 87726309--87726346 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
87726299 ACTAAAGTTA
87726309 TCTTACATTTTCATCAT
1 TCTTACATTTTCATCAT
87726326 TCTTACATTTTCATCAT
1 TCTTACATTTTCATCAT
87726343 TCTT
1 TCTT
87726347 TCTTCCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (17 bp):
TCTTACATTTTCATCAT
Found at i:87727224 original size:37 final size:37
Alignment explanation
Indices: 87727182--87727252 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
87727172 CTTAAATTAC
87727182 AAGTATATGGTTATTTGATATGTGAACGAAAATGAAT
1 AAGTATATGGTTATTTGATATGTGAACGAAAATGAAT
*
87727219 AAGTATATGGTTATTTGATATGTGTACGAAAATG
1 AAGTATATGGTTATTTGATATGTGAACGAAAATG
87727253 TTCAAAAGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.37
Consensus pattern (37 bp):
AAGTATATGGTTATTTGATATGTGAACGAAAATGAAT
Found at i:87727632 original size:17 final size:17
Alignment explanation
Indices: 87727609--87727652 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
87727599 TTATTAAATA
87727609 ATTATTTAGTTTATATTT
1 ATTATTTA-TTTATATTT
*
87727627 -TTATTTATTTATTTTT
1 ATTATTTATTTATATTT
87727643 ATTATTTATT
1 ATTATTTATT
87727653 ATTTTTTGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (17 bp):
ATTATTTATTTATATTT
Found at i:87727641 original size:13 final size:13
Alignment explanation
Indices: 87727622--87727652 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
87727612 ATTTAGTTTA
87727622 TATTTTTATTTATT
1 TATTTTTA-TTATT
87727636 TATTTTTATTATT
1 TATTTTTATTATT
87727649 TATT
1 TATT
87727653 ATTTTTTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TATTTTTATTATT
Found at i:87727654 original size:20 final size:20
Alignment explanation
Indices: 87727609--87727656 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
87727599 TTATTAAATA
87727609 ATTATTTAGTTTATATTTTT
1 ATTATTTAGTTTATATTTTT
*
87727629 ATTTATTTA-TTTTTATTATTT
1 A-TTATTTAGTTTATATT-TTT
87727650 ATTATTT
1 ATTATTT
87727657 TTTGACTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (20 bp):
ATTATTTAGTTTATATTTTT
Found at i:87727659 original size:17 final size:17
Alignment explanation
Indices: 87727609--87727658 Score: 68
Period size: 16 Copynumber: 3.0 Consensus size: 17
87727599 TTATTAAATA
*
87727609 ATTATTTAGTTTATATTT
1 ATTATTTA-TTTATTTTT
87727627 -TTATTTATTTATTTTT
1 ATTATTTATTTATTTTT
87727643 ATTATTTA-TTATTTTT
1 ATTATTTATTTATTTTT
87727659 TGACTTCTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 16 0.53
17 14 0.47
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (17 bp):
ATTATTTATTTATTTTT
Found at i:87738472 original size:15 final size:15
Alignment explanation
Indices: 87738452--87738482 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
87738442 ACTAATTATC
87738452 TTGTTTCAAATATTA
1 TTGTTTCAAATATTA
87738467 TTGTTTCAAATATTA
1 TTGTTTCAAATATTA
87738482 T
1 T
87738483 CTTAAGTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (15 bp):
TTGTTTCAAATATTA
Found at i:87739140 original size:21 final size:22
Alignment explanation
Indices: 87739091--87739140 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
87739081 TTTTAAAATT
87739091 AAAATT-TTTTAAACAATTATA
1 AAAATTATTTTAAACAATTATA
*
87739112 AAATTTATTTCTAAA-AATTA-A
1 AAAATTATTT-TAAACAATTATA
87739133 AAAATTAT
1 AAAATTAT
87739141 AAAATTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 13 0.52
22 8 0.32
23 4 0.16
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATTATTTTAAACAATTATA
Found at i:87739192 original size:17 final size:18
Alignment explanation
Indices: 87739170--87739217 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
87739160 CAAAATTATT
*
87739170 TTTTAAAATATT-TTTAA
1 TTTTAAAATATTAATTAA
*
87739187 TTTTAAAAAATTAATTAA
1 TTTTAAAATATTAATTAA
*
87739205 TTATTAATATATT
1 TT-TTAAAATATT
87739218 GTGTCAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 11 0.44
18 6 0.24
19 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTAAAATATTAATTAA
Found at i:87739204 original size:18 final size:17
Alignment explanation
Indices: 87739161--87739211 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
87739151 CAACTATAAC
87739161 AAAATTATT--TTTTAA
1 AAAATTATTAATTTTAA
* *
87739176 AATATTTTTAATTTTAA
1 AAAATTATTAATTTTAA
87739193 AAAATTAATTAATTATTAA
1 AAAATT-ATTAATT-TTAA
87739212 TATATTGTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 7 0.25
17 11 0.39
18 6 0.21
19 4 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AAAATTATTAATTTTAA
Found at i:87740742 original size:18 final size:18
Alignment explanation
Indices: 87740719--87741001 Score: 133
Period size: 18 Copynumber: 15.3 Consensus size: 18
87740709 GAATAATTAT
87740719 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
87740737 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * **
87740755 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAG
*
87740773 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A--G-TCAG
* *
87740799 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
*
87740817 TTATTCAGTAA-AATCAG
1 TTATTCAGTAACAGTCAG
* * *
87740834 ATATTCAGTAACTATTAAG
1 TTATTCAGTAAC-AGTCAG
*
87740853 TTATTCAGTAGCAGTCA-
1 TTATTCAGTAACAGTCAG
* * *
87740870 TTCATTCAGTGACAATCAA
1 TT-ATTCAGTAACAGTCAG
* *
87740889 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* *
87740907 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAG
*
87740925 TAATTCAGTAACAGTCTA-
1 TTATTCAGTAACAGTC-AG
* * * *
87740943 ATATCCAGTAACAGTAAA
1 TTATTCAGTAACAGTCAG
* * * *
87740961 TTATCCGGTAATAGTCAA
1 TTATTCAGTAACAGTCAG
* *
87740979 TTATTCAGTAACAATAAG
1 TTATTCAGTAACAGTCAG
87740997 TTATT
1 TTATT
87741002 TTATTCCTTT
Statistics
Matches: 197, Mismatches: 52, Indels: 32
0.70 0.19 0.11
Matches are distributed among these distances:
17 17 0.09
18 146 0.74
19 18 0.09
21 2 0.01
22 1 0.01
23 2 0.01
26 11 0.06
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:87740761 original size:36 final size:36
Alignment explanation
Indices: 87740719--87741001 Score: 160
Period size: 36 Copynumber: 7.6 Consensus size: 36
87740709 GAATAATTAT
* *
87740719 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * * *
87740755 TTATTCAATAATAACCAGTTATTCAGTATCGATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* *
87740791 TTGATCGGTTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA
1 TT-A-----T-T-CAGTAACAATCAGTTATTCAGTAACAATCA-A
* * * *
87740835 -TATTCAGTAACTATTAAGTTATTCAGTAGCAGTC-A
1 TTATTCAGTAAC-AATCAGTTATTCAGTAACAATCAA
* * **
87740870 TTCATTCAGTGACAATCAATTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * *
87740907 TTATTCAGTAATATTCAGTAATTCAGTAACAGTCTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATC-AA
* * * * * * * *
87740944 -TATCCAGTAACAGTAAATTATCCGGTAATAGTCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
*
87740979 TTATTCAGTAACAATAAGTTATT
1 TTATTCAGTAACAATCAGTTATT
87741002 TTATTCCTTT
Statistics
Matches: 183, Mismatches: 48, Indels: 32
0.70 0.18 0.12
Matches are distributed among these distances:
35 10 0.05
36 127 0.69
37 19 0.10
42 2 0.01
43 6 0.03
44 19 0.10
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
Found at i:87740931 original size:72 final size:72
Alignment explanation
Indices: 87740800--87740990 Score: 226
Period size: 72 Copynumber: 2.6 Consensus size: 72
87740790 ATTGATCGGT
* * *
87740800 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGA-TATTCAGTAACTATTAAGTTATTCAGTAG
1 TATCCAGTAACAGTCAATTATTCAGTAATATCA-ATTATTCAGTAACTATTAAGTAATTCAGTAA
*
87740864 CAGTC-AT
65 CAGTCTAA
* * * *
87740871 TCATTCAGTGACAATCAATTATTCAGTAATGATCAATTATTCAGTAA-TATTCAGTAATTCAGTA
1 T-ATCCAGTAACAGTCAATTATTCAGTAAT-ATCAATTATTCAGTAACTATTAAGTAATTCAGTA
87740935 ACAGTCTAA
64 ACAGTCTAA
* * *
87740944 TATCCAGTAACAGTAAATTATCCGGTAATAGTCAATTATTCAGTAAC
1 TATCCAGTAACAGTCAATTATTCAGTAATA-TCAATTATTCAGTAAC
87740991 AATAAGTTAT
Statistics
Matches: 100, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
71 2 0.02
72 82 0.82
73 16 0.16
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (72 bp):
TATCCAGTAACAGTCAATTATTCAGTAATATCAATTATTCAGTAACTATTAAGTAATTCAGTAAC
AGTCTAA
Found at i:87741217 original size:45 final size:45
Alignment explanation
Indices: 87741169--87741407 Score: 354
Period size: 45 Copynumber: 5.3 Consensus size: 45
87741159 ATCTGGAATA
* * * * *
87741169 GTAACAGTAACAATAACAGTATTCAACACACAAAGTGCTGAATCA
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* *
87741214 GTAACGGTAACAGTAACAATATTCGACACACACAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
87741259 GTAACAGTAACAGTAA-AATATTCGACACACACAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* * *
87741303 ATAACGGTAACAGTAACAATACTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
87741348 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
87741393 GTAACAGTAGCAGTA
1 GTAACAGTAACAGTA
87741408 GCGTTAACAA
Statistics
Matches: 177, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
44 42 0.24
45 135 0.76
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.18
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
Found at i:87741295 original size:89 final size:89
Alignment explanation
Indices: 87741169--87741407 Score: 354
Period size: 89 Copynumber: 2.7 Consensus size: 89
87741159 ATCTGGAATA
* * * *
87741169 GTAACAGTAACAATAACAGTATTCAACACACAAAGTGCTGAATCAGTAACGGTAACAGTAACAAT
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATC-GTAACGGTAACAGTAACAAT
* *
87741234 ATTCGACACACACAGTGCCGAATCG
65 ACTCGACACACAAAGTGCCGAATCG
*
87741259 GTAACAGTAACAGTAA-AATATTCGACACACACAGTGCCGAATCGATAACGGTAACAGTAACAAT
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG-TAACGGTAACAGTAACAAT
87741323 ACTCGACACACAAAGTGCCGAATCG
65 ACTCGACACACAAAGTGCCGAATCG
* * *
87741348 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACAGTAGCAGTA
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATC-GTAACGGTAACAGTA
87741408 GCGTTAACAA
Statistics
Matches: 135, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
88 1 0.01
89 80 0.59
90 53 0.39
91 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.18
Consensus pattern (89 bp):
GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGTAACGGTAACAGTAACAATA
CTCGACACACAAAGTGCCGAATCG
Found at i:87741833 original size:5 final size:5
Alignment explanation
Indices: 87741815--87741856 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
87741805 AATTAATCAT
* *
87741815 AATTC CATTC AATTT AATTC AATTC AATTC AATTC AAATTC A
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC -AATTC A
87741857 CTTTTCCACT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
5 27 0.84
6 5 0.16
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTC
Found at i:87743175 original size:17 final size:16
Alignment explanation
Indices: 87743151--87743184 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
87743141 AATTTTCCCT
87743151 TTTCTCCCTTTCTTTC
1 TTTCTCCCTTTCTTTC
87743167 TTTCTTCCCTTTCTTTC
1 TTTC-TCCCTTTCTTTC
87743184 T
1 T
87743185 CCCCTGTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTCTCCCTTTCTTTC
Found at i:87743198 original size:13 final size:13
Alignment explanation
Indices: 87743162--87743195 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
87743152 TTCTCCCTTT
*
87743162 CTTTCTTTCTTCC
1 CTTTCTTTCTCCC
87743175 CTTTCTTTCTCCC
1 CTTTCTTTCTCCC
87743188 CTGTTCTT
1 CT-TTCTT
87743196 CTCTGTTTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.00, C:0.38, G:0.03, T:0.59
Consensus pattern (13 bp):
CTTTCTTTCTCCC
Found at i:87743246 original size:9 final size:9
Alignment explanation
Indices: 87743228--87743274 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
87743218 TTTTTTTTTC
*
87743228 ATTTCTTTT
1 ATTTCATTT
87743237 ATTTCATTT
1 ATTTCATTT
87743246 ATTTC-TTT
1 ATTTCATTT
*
87743254 AATTCATTT
1 ATTTCATTT
* *
87743263 CTTTAATTT
1 ATTTCATTT
87743272 ATT
1 ATT
87743275 ATTAAACTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
8 7 0.23
9 24 0.77
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (9 bp):
ATTTCATTT
Found at i:87743249 original size:18 final size:17
Alignment explanation
Indices: 87743228--87743262 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
87743218 TTTTTTTTTC
*
87743228 ATTTCTTTTATTTCATTT
1 ATTTC-TTTAATTCATTT
87743246 ATTTCTTTAATTCATTT
1 ATTTCTTTAATTCATTT
87743263 CTTTAATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.20, C:0.11, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTCTTTAATTCATTT
Found at i:87743264 original size:13 final size:13
Alignment explanation
Indices: 87743246--87743270 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87743236 TATTTCATTT
87743246 ATTTCTTTAATTC
1 ATTTCTTTAATTC
87743259 ATTTCTTTAATT
1 ATTTCTTTAATT
87743271 TATTATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTTCTTTAATTC
Found at i:87746222 original size:30 final size:32
Alignment explanation
Indices: 87746188--87746257 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 32
87746178 TGACCCAATA
* *
87746188 GTAAATATTCAAAA-TTTGAAGGATTAA-AGT
1 GTAAATATTCAAAATTTTAAAGGACTAATAGT
*
87746218 GTAAATA-TGAAAATTTTAAAGGACTAATAGT
1 GTAAATATTCAAAATTTTAAAGGACTAATAGT
*
87746249 GCAAATATT
1 GTAAATATT
87746258 TTAAGGACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 5 0.15
30 18 0.55
31 9 0.27
32 1 0.03
ACGTcount: A:0.47, C:0.04, G:0.16, T:0.33
Consensus pattern (32 bp):
GTAAATATTCAAAATTTTAAAGGACTAATAGT
Found at i:87746504 original size:8 final size:8
Alignment explanation
Indices: 87746493--87746517 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
87746483 TTTAATAAGA
87746493 TATTTTAT
1 TATTTTAT
87746501 TATTTTAT
1 TATTTTAT
87746509 TATTTTAT
1 TATTTTAT
87746517 T
1 T
87746518 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:87747799 original size:43 final size:43
Alignment explanation
Indices: 87747751--87747909 Score: 175
Period size: 43 Copynumber: 3.7 Consensus size: 43
87747741 AAAGCTCGTA
* *
87747751 CAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATAT
*
87747794 CAATGCC-ACTGTCCCAG--GTAAGGTCTTACACGAAATCAAATA-
1 CAATGCCAAC-GTCCCAGACGT--GGTCTTACACGTAATCAAATAT
* * *
87747836 CGATGCCAATGTCCCAGACGTGGTCTTACACGTAAATACCAA-AT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGT-AAT-CAAATAT
*
87747880 CGATGCCAACGTCCCAGACGTGGTCTTACA
1 CAATGCCAACGTCCCAGACGTGGTCTTACA
87747910 TGATATCACA
Statistics
Matches: 99, Mismatches: 8, Indels: 17
0.80 0.06 0.14
Matches are distributed among these distances:
41 2 0.02
42 26 0.26
43 37 0.37
44 34 0.34
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATAT
Found at i:87747894 original size:44 final size:43
Alignment explanation
Indices: 87747753--87747909 Score: 173
Period size: 44 Copynumber: 3.7 Consensus size: 43
87747743 AGCTCGTACA
* * * *
87747753 ATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCAAATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCCAA-ATCG
87747796 ATGCC-ACTGTCCCAG--GTAAGGTCTTACACG-AAAT-CAAATACG
1 ATGCCAAC-GTCCCAGACGT--GGTCTTACACGTAAATCCAAAT-CG
*
87747838 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATACCAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAT-CCAAATCG
87747882 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
87747910 TGATATCACA
Statistics
Matches: 97, Mismatches: 6, Indels: 21
0.78 0.05 0.17
Matches are distributed among these distances:
41 4 0.04
42 28 0.29
43 29 0.30
44 31 0.32
45 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCCAAATCG
Found at i:87752882 original size:15 final size:15
Alignment explanation
Indices: 87752864--87752914 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
87752854 CCGTTGTTGG
87752864 TGTGGTAGGAGTCCC
1 TGTGGTAGGAGTCCC
* *
87752879 TGTGGTTGGTGT---
1 TGTGGTAGGAGTCCC
87752891 TGTGGTAGGAGTCCC
1 TGTGGTAGGAGTCCC
87752906 TGTGGTAGG
1 TGTGGTAGG
87752915 TGTTGTTGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
12 10 0.34
15 19 0.66
ACGTcount: A:0.10, C:0.12, G:0.45, T:0.33
Consensus pattern (15 bp):
TGTGGTAGGAGTCCC
Found at i:87752894 original size:27 final size:27
Alignment explanation
Indices: 87752864--87752944 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
87752854 CCGTTGTTGG
*
87752864 TGTGGTAGGAGTCCCTGTGGTTGGTGT
1 TGTGGTAGGAGTCCCTGTGGTAGGTGT
87752891 TGTGGTAGGAGTCCCTGTGGTAGGTGT
1 TGTGGTAGGAGTCCCTGTGGTAGGTGT
* *
87752918 TGT--T-GGAGTCCCTGTAGTAGGAGT
1 TGTGGTAGGAGTCCCTGTGGTAGGTGT
87752942 TGT
1 TGT
87752945 CGGAGTCCCT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
24 21 0.41
25 1 0.02
27 29 0.57
ACGTcount: A:0.11, C:0.11, G:0.42, T:0.36
Consensus pattern (27 bp):
TGTGGTAGGAGTCCCTGTGGTAGGTGT
Found at i:87752991 original size:24 final size:24
Alignment explanation
Indices: 87752840--87752992 Score: 128
Period size: 24 Copynumber: 6.2 Consensus size: 24
87752830 TGCTTGTCCC
* * * *
87752840 TGTTGTCGGTGTCCCCGTTGTTGG
1 TGTTGTCGGAGTCCCTGTGGTAGG
* * *
87752864 TGTGGTAGGAGTCCCTGTGGTTGG
1 TGTTGTCGGAGTCCCTGTGGTAGG
*
87752888 TGTTGTGGTAGGAGTCCCTGTGGTAGG
1 TG-T-T-GTCGGAGTCCCTGTGGTAGG
* *
87752915 TGTTGTTGGAGTCCCTGTAGTAGG
1 TGTTGTCGGAGTCCCTGTGGTAGG
* ** *
87752939 AGTTGTCGGAGTCCCTGTACTCGG
1 TGTTGTCGGAGTCCCTGTGGTAGG
*
87752963 AGTTGTCGGAGTCCCTGTGG-ATGG
1 TGTTGTCGGAGTCCCTGTGGTA-GG
87752987 TGTTGT
1 TGTTGT
87752993 GCTTGTGCCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
24 84 0.78
25 2 0.02
26 1 0.01
27 21 0.19
ACGTcount: A:0.09, C:0.16, G:0.40, T:0.35
Consensus pattern (24 bp):
TGTTGTCGGAGTCCCTGTGGTAGG
Found at i:87755112 original size:23 final size:20
Alignment explanation
Indices: 87755050--87755115 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 20
87755040 AACACAATAT
87755050 AAATATATTTGTGATAAAAA
1 AAATATATTTGTGATAAAAA
* * *
87755070 AATTATAGTAGTGTATTAAATTAA
1 AAATATATTTGTG-A-TAAA--AA
87755094 ATAATATATTTGTGATAAAAA
1 A-AATATATTTGTGATAAAAA
87755115 A
1 A
87755116 TTATAGTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
20 10 0.29
21 4 0.11
22 4 0.11
23 4 0.11
24 4 0.11
25 9 0.26
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.38
Consensus pattern (20 bp):
AAATATATTTGTGATAAAAA
Found at i:87755380 original size:17 final size:18
Alignment explanation
Indices: 87755360--87755393 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
87755350 ATTGTAATAT
*
87755360 ATATTTTTAA-AATATAA
1 ATATTTTCAATAATATAA
87755377 ATATTTTCAATAATATA
1 ATATTTTCAATAATATA
87755394 TTAAGAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATTTTCAATAATATAA
Found at i:87760642 original size:17 final size:19
Alignment explanation
Indices: 87760608--87760645 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
87760598 ATATTAAGAA
87760608 TATTATTTAAAATTTAAAAT
1 TATTATTTAAAA-TTAAAAT
*
87760628 TATTA-TTAAAATAAAAAT
1 TATTATTTAAAATTAAAAT
87760646 ATAATATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 6 0.35
20 5 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TATTATTTAAAATTAAAAT
Found at i:87760695 original size:29 final size:31
Alignment explanation
Indices: 87760630--87760695 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
87760620 TTTAAAATTA
87760630 TTATTAAAATAAAAATATAATATTAAATAAT
1 TTATTAAAATAAAAATATAATATTAAATAAT
*
87760661 TTATTAAAATAATAAAT-T-GTATT-AATAAT
1 TTATTAAAATAA-AAATATAATATTAAATAAT
87760690 TTATTA
1 TTATTA
87760696 TATTTTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 12 0.36
30 4 0.12
31 13 0.39
32 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (31 bp):
TTATTAAAATAAAAATATAATATTAAATAAT
Found at i:87762538 original size:47 final size:48
Alignment explanation
Indices: 87762480--87762571 Score: 150
Period size: 47 Copynumber: 1.9 Consensus size: 48
87762470 CAATGTATAA
*
87762480 AGCTTGATTAGGTGGGCTGAATCAGGT-AGAGATATTGTATGTAACAG
1 AGCTTGATTAGGTGGGCTGAATCAGGTAAAAGATATTGTATGTAACAG
**
87762527 AGCTTGATTAGGTGGTTTGAATCAGGTAAAAGATATTGTATGTAA
1 AGCTTGATTAGGTGGGCTGAATCAGGTAAAAGATATTGTATGTAA
87762572 TTATATTGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 25 0.61
48 16 0.39
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.33
Consensus pattern (48 bp):
AGCTTGATTAGGTGGGCTGAATCAGGTAAAAGATATTGTATGTAACAG
Found at i:87764490 original size:89 final size:85
Alignment explanation
Indices: 87764301--87764608 Score: 262
Period size: 89 Copynumber: 3.5 Consensus size: 85
87764291 GTATTATTTC
* * *
87764301 TTTAGAATGTTTGTATTTTTTATATCTGTAAATTTAATTTATTCGT-TTA-AGGTTTAGGGTTTC
1 TTTAGAATGTTTGTATTTTTTGTATCTGTAAATTTAATTTATACGTATTATA--TTTA--GTTTG
*
87764364 ATTTTTATATTTTCGTGTATTAATT
62 AATTTTATATTTTCGTGTATTAA-T
* *
87764389 TCTTAGAATGTTTGTATTTTTTGTATCTGTAAATTTAATTTAGTCCATATTATATTTAGTTTGAA
1 T-TTAGAATGTTTGTATTTTTTGTATCTGTAAATTTAATTTA-TACGTATTATATTTAGTTTGAA
* *
87764454 TTTAAAATTTTCGTGTATTAAT
64 TTTTATATTTTCGTGTATTAAT
* * * * ** * * * *
87764476 TTTACCCATCTGTTTATAGTTTGTTGGGTGTTTAAGTTTAATTTAATACGTATTAT-TTGTTGTT
1 TTTA--GA-ATGTTTGTA-TTTTTTGTATCTGTAAATTTAATTT-ATACGTATTATATT-TAGTT
**
87764540 TGAATTTTATATTTTTATGTATTAAT
60 TGAATTTTATATTTTCGTGTATTAAT
*
87764566 ATTCTAGAAAGTTTGTATTTTCTTGTATCTGTAAATTTAATTT
1 -TT-TAGAATGTTTGTATTTT-TTGTATCTGTAAATTTAATTT
87764609 GTTTTGTACT
Statistics
Matches: 174, Mismatches: 33, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
86 3 0.02
87 2 0.01
88 29 0.17
89 70 0.40
90 61 0.35
91 6 0.03
92 3 0.02
ACGTcount: A:0.26, C:0.06, G:0.13, T:0.56
Consensus pattern (85 bp):
TTTAGAATGTTTGTATTTTTTGTATCTGTAAATTTAATTTATACGTATTATATTTAGTTTGAATT
TTATATTTTCGTGTATTAAT
Found at i:87767167 original size:12 final size:12
Alignment explanation
Indices: 87767133--87767175 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
87767123 AAATTATTTT
*
87767133 TTCATTTCAAAT
1 TTCATTTCAAAC
*
87767145 TTAATTT--AAC
1 TTCATTTCAAAC
87767155 TTCATTTCAAAC
1 TTCATTTCAAAC
87767167 TTCATTTCA
1 TTCATTTCA
87767176 TTCCATTTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 8 0.31
12 18 0.69
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (12 bp):
TTCATTTCAAAC
Found at i:87767224 original size:20 final size:19
Alignment explanation
Indices: 87767199--87767258 Score: 75
Period size: 21 Copynumber: 3.0 Consensus size: 19
87767189 TAACATTCCA
87767199 TTTCATTTAAATTTTCTTTT
1 TTTCATTTAAATTTT-TTTT
87767219 TTTCATTTAAATTTAATTTTT
1 TTTCATTTAAATTT--TTTTT
* *
87767240 TCTCATTTCAATTTTTTTT
1 TTTCATTTAAATTTTTTTT
87767259 CATATTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
19 5 0.14
20 14 0.39
21 16 0.44
22 1 0.03
ACGTcount: A:0.22, C:0.10, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTCATTTAAATTTTTTTT
Found at i:87767245 original size:21 final size:20
Alignment explanation
Indices: 87767199--87767253 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
87767189 TAACATTCCA
**
87767199 TTTCATTTAAATTTTCTTTT
1 TTTCATTTAAATTTAATTTT
87767219 TTTCATTTAAATTTAATTTT
1 TTTCATTTAAATTTAATTTT
*
87767239 TTCTCATTTCAATTT
1 TT-TCATTTAAATTT
87767254 TTTTTCATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 20 0.65
21 11 0.35
ACGTcount: A:0.24, C:0.11, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTCATTTAAATTTAATTTT
Found at i:87767254 original size:16 final size:15
Alignment explanation
Indices: 87767229--87767267 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
87767219 TTTCATTTAA
87767229 ATTTAATTTTTTCTC
1 ATTTAATTTTTTCTC
*
87767244 ATTTCAATTTTTTTTC
1 ATTT-AATTTTTTCTC
87767260 ATATTAAT
1 AT-TTAAT
87767268 AACAAGTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 4 0.19
16 15 0.71
17 2 0.10
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTAATTTTTTCTC
Found at i:87767316 original size:18 final size:19
Alignment explanation
Indices: 87767279--87767324 Score: 76
Period size: 18 Copynumber: 2.5 Consensus size: 19
87767269 ACAAGTAGTC
*
87767279 TCATTTGAATTTTGTTTTT
1 TCATTTCAATTTTGTTTTT
87767298 TCATTTCAATTTT-TTTTT
1 TCATTTCAATTTTGTTTTT
87767316 TCATTTCAA
1 TCATTTCAA
87767325 ATTATAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 14 0.54
19 12 0.46
ACGTcount: A:0.20, C:0.11, G:0.04, T:0.65
Consensus pattern (19 bp):
TCATTTCAATTTTGTTTTT
Found at i:87767322 original size:23 final size:21
Alignment explanation
Indices: 87767279--87767351 Score: 62
Period size: 23 Copynumber: 3.4 Consensus size: 21
87767269 ACAAGTAGTC
* *
87767279 TCATTTGAATTTTGTTT--TT
1 TCATTTCAATTTTTTTTCATT
87767298 TCATTTCAATTTTTTTTTTCATT
1 TCATTTCAA--TTTTTTTTCATT
87767321 TCAAATTAT-AATTTTTTTTCATT
1 TC--ATT-TCAATTTTTTTTCATT
87767344 TCATTTCA
1 TCATTTCA
87767352 TTTCATATTC
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
19 8 0.18
20 1 0.02
21 11 0.25
23 18 0.41
25 5 0.11
26 1 0.02
ACGTcount: A:0.22, C:0.11, G:0.03, T:0.64
Consensus pattern (21 bp):
TCATTTCAATTTTTTTTCATT
Found at i:87767347 original size:5 final size:5
Alignment explanation
Indices: 87767337--87767381 Score: 63
Period size: 5 Copynumber: 8.4 Consensus size: 5
87767327 TATAATTTTT
87767337 TTTCA TTTCA TTTCA TTTCA TATTCA TTTAACA TTTCA TTTCA TT
1 TTTCA TTTCA TTTCA TTTCA T-TTCA TTT--CA TTTCA TTTCA TT
87767382 AAAATTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
5 27 0.73
6 5 0.14
7 5 0.14
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (5 bp):
TTTCA
Found at i:87767374 original size:23 final size:21
Alignment explanation
Indices: 87767338--87767380 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 21
87767328 ATAATTTTTT
87767338 TTCATTTCATTTCATTTCATA
1 TTCATTTCATTTCATTTCATA
87767359 TTCATTTAACATTTCATTTCAT
1 TTCATTT--CATTTCATTTCAT
87767381 TAAAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 7 0.35
23 13 0.65
ACGTcount: A:0.26, C:0.19, G:0.00, T:0.56
Consensus pattern (21 bp):
TTCATTTCATTTCATTTCATA
Found at i:87767399 original size:16 final size:17
Alignment explanation
Indices: 87767337--87767400 Score: 64
Period size: 16 Copynumber: 3.9 Consensus size: 17
87767327 TATAATTTTT
*
87767337 TTTCATTTCATTT--CA
1 TTTCATTTCATTTAAAA
*
87767352 TTTCATATTCATTTAACA
1 TTTCAT-TTCATTTAAAA
87767370 TTTCATTTCA-TTAAAA
1 TTTCATTTCATTTAAAA
*
87767386 TTT-TTTTCATTTAAA
1 TTTCATTTCATTTAAA
87767401 TTTATTTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
15 11 0.26
16 20 0.47
17 4 0.09
18 8 0.19
ACGTcount: A:0.30, C:0.14, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTCATTTCATTTAAAA
Found at i:87767408 original size:16 final size:16
Alignment explanation
Indices: 87767359--87767408 Score: 59
Period size: 15 Copynumber: 3.1 Consensus size: 16
87767349 TCATTTCATA
87767359 TTCATTTAACATTTCA-T
1 TTCATTTAA-ATTT-ATT
*
87767376 TTCATTAAAATTT-TT
1 TTCATTTAAATTTATT
87767391 TTCATTTAAATTTATT
1 TTCATTTAAATTTATT
87767407 TT
1 TT
87767409 TTTCTAGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
15 13 0.45
16 8 0.28
17 8 0.28
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (16 bp):
TTCATTTAAATTTATT
Found at i:87767438 original size:19 final size:20
Alignment explanation
Indices: 87767385--87767440 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
87767375 TTTCATTAAA
87767385 ATTTTTTTCAT-TTAAATTT
1 ATTTTTTTCATATTAAATTT
87767404 ATTTTTTTCTAGTATTCAAA-TT
1 ATTTTTTTC-A-TATT-AAATTT
87767426 -TTTTTTTCATATTAA
1 ATTTTTTTCATATTAA
87767441 TCACAAGTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.06
19 13 0.39
20 2 0.06
21 9 0.27
22 4 0.12
23 3 0.09
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTTTTTCATATTAAATTT
Found at i:87767610 original size:25 final size:26
Alignment explanation
Indices: 87767577--87767630 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
87767567 TTTTTCTCAA
* *
87767577 TTTAAATTTCATTT-CATTTCAAAAT
1 TTTAAATTTCATTTAAATTTAAAAAT
*
87767602 TTTAAATTTTATTTAAATTTAAAAAT
1 TTTAAATTTCATTTAAATTTAAAAAT
87767628 TTT
1 TTT
87767631 CTCATTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (26 bp):
TTTAAATTTCATTTAAATTTAAAAAT
Found at i:87767810 original size:19 final size:19
Alignment explanation
Indices: 87767786--87767823 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
87767776 ACATGTTTTG
*
87767786 CCAATTTTTTTTTCTCATT
1 CCAATTTTTATTTCTCATT
87767805 CCAATTTTTATTTCTCATT
1 CCAATTTTTATTTCTCATT
87767824 TTTTTTCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.00, T:0.61
Consensus pattern (19 bp):
CCAATTTTTATTTCTCATT
Found at i:87767826 original size:13 final size:13
Alignment explanation
Indices: 87767808--87767847 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
87767798 TCTCATTCCA
87767808 ATTTTTATTTCTC
1 ATTTTTATTTCTC
87767821 A-TTTT-TTT-TC
1 ATTTTTATTTCTC
*
87767831 ATTTTCATTTCTC
1 ATTTTTATTTCTC
87767844 ATTT
1 ATTT
87767848 AATTTCATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
10 3 0.13
11 6 0.26
12 7 0.30
13 7 0.30
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTTTATTTCTC
Found at i:87767834 original size:23 final size:23
Alignment explanation
Indices: 87767808--87767857 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
87767798 TCTCATTCCA
* **
87767808 ATTTTTATTTCTCATTTTTTTTC
1 ATTTTCATTTCTCATTTAATTTC
87767831 ATTTTCATTTCTCATTTAATTTC
1 ATTTTCATTTCTCATTTAATTTC
87767854 ATTT
1 ATTT
87767858 AAATTTATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.68
Consensus pattern (23 bp):
ATTTTCATTTCTCATTTAATTTC
Found at i:87767863 original size:23 final size:23
Alignment explanation
Indices: 87767814--87767863 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
87767804 TCCAATTTTT
** **
87767814 ATTTCTCATTTTTTTTCATTTTC
1 ATTTCTCATTTAATTTCATTTAA
87767837 ATTTCTCATTTAATTTCATTTAA
1 ATTTCTCATTTAATTTCATTTAA
87767860 ATTT
1 ATTT
87767864 ATTTTTAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTCTCATTTAATTTCATTTAA
Found at i:87767873 original size:22 final size:22
Alignment explanation
Indices: 87767845--87767963 Score: 65
Period size: 22 Copynumber: 5.6 Consensus size: 22
87767835 TCATTTCTCA
87767845 TTTAATTTCATTTAAATTTATT
1 TTTAATTTCATTTAAATTTATT
87767867 TTT-A----ATTTAAATTTA-T
1 TTTAATTTCATTTAAATTTATT
* * *
87767883 TTCATTTTCCATTTTAATTTATT
1 TTTAATTT-CATTTAAATTTATT
* * *
87767906 TTTTATCTCATTTTAATTTA--
1 TTTAATTTCATTTAAATTTATT
* *
87767926 TTTAATTTTTCATTTCAATTTATAA
1 TTTAA--TTTCATTTAAATTTAT-T
*
87767951 TTTATTTTCATTT
1 TTTAATTTCATTT
87767964 CATATTCATT
Statistics
Matches: 74, Mismatches: 11, Indels: 23
0.69 0.10 0.21
Matches are distributed among these distances:
16 3 0.04
17 11 0.15
20 4 0.05
21 1 0.01
22 38 0.51
23 13 0.18
25 4 0.05
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTAATTTCATTTAAATTTATT
Found at i:87767955 original size:44 final size:44
Alignment explanation
Indices: 87767871--87767955 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
87767861 TTTATTTTTA
* * **
87767871 ATTTAAATTTATTTCATTTTCCATTTTAATTTATTTTTTATCTC
1 ATTTAAATTTATTTAATTTTCCATTTCAATTTATAATTTATCTC
* *
87767915 ATTTTAATTTATTTAATTTTTCATTTCAATTTATAATTTAT
1 ATTTAAATTTATTTAATTTTCCATTTCAATTTATAATTTAT
87767956 TTTCATTTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (44 bp):
ATTTAAATTTATTTAATTTTCCATTTCAATTTATAATTTATCTC
Found at i:87767957 original size:29 final size:26
Alignment explanation
Indices: 87767899--87767957 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
87767889 TTCCATTTTA
*
87767899 ATTTATTTTTTATCTCATTTTAATTT
1 ATTTATTTTTCATCTCATTTTAATTT
*
87767925 ATTTAATTTTTCATTTCAATTTATAATTT
1 ATTT-ATTTTTCATCTC-ATTT-TAATTT
87767954 ATTT
1 ATTT
87767958 TCATTTCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.14
27 10 0.36
28 4 0.14
29 10 0.36
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (26 bp):
ATTTATTTTTCATCTCATTTTAATTT
Found at i:87767963 original size:17 final size:16
Alignment explanation
Indices: 87767844--87767889 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 16
87767834 TTCATTTCTC
*
87767844 ATTTAATTTCATTTAA
1 ATTTATTTTCATTTAA
*
87767860 ATTTATTTTTAATTTAA
1 ATTTA-TTTTCATTTAA
87767877 ATTTA-TTTCATTT
1 ATTTATTTTCATTT
87767890 TCCATTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 7 0.27
16 5 0.19
17 14 0.54
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (16 bp):
ATTTATTTTCATTTAA
Found at i:87768023 original size:21 final size:21
Alignment explanation
Indices: 87767986--87768089 Score: 101
Period size: 21 Copynumber: 5.0 Consensus size: 21
87767976 ATACTTCGTT
*
87767986 TCATTTCATATTCATTTTTTTA
1 TCATTTCA-ATTTATTTTTTTA
* *
87768008 TCATCTCAATTTATTTTTTTC
1 TCATTTCAATTTATTTTTTTA
87768029 TCATTTCAATTTATTCTTTTT-
1 TCATTTCAATTTATT-TTTTTA
* *
87768050 TCA----AATTCATTTTTTTTC
1 TCATTTCAATTTA-TTTTTTTA
87768068 TCATTTCAATTTATTTTTTTA
1 TCATTTCAATTTATTTTTTTA
87768089 T
1 T
87768090 TTTTAGTTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 15
0.76 0.08 0.17
Matches are distributed among these distances:
17 10 0.15
18 5 0.07
21 36 0.53
22 17 0.25
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (21 bp):
TCATTTCAATTTATTTTTTTA
Found at i:87768138 original size:17 final size:18
Alignment explanation
Indices: 87768099--87768141 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
87768089 TTTTTAGTTT
*
87768099 ATATTTTAATTTCATCCC
1 ATATTTTAAATTCATCCC
*
87768117 ATATTTTAAATTCAT-TC
1 ATATTTTAAATTCATCCC
87768134 ATATTTTA
1 ATATTTTA
87768142 TTCACTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.53
Consensus pattern (18 bp):
ATATTTTAAATTCATCCC
Found at i:87768646 original size:43 final size:44
Alignment explanation
Indices: 87768559--87768649 Score: 166
Period size: 44 Copynumber: 2.1 Consensus size: 44
87768549 GAATTAATAT
87768559 ATTTAATGTGTTTTAAATTAAATATATATGTATATTGTATTATA
1 ATTTAATGTGTTTTAAATTAAATATATATGTATATTGTATTATA
*
87768603 ATTTAATGTGTTTTAAATTAAATA-GTATGTATATTGTATTATA
1 ATTTAATGTGTTTTAAATTAAATATATATGTATATTGTATTATA
87768646 ATTT
1 ATTT
87768650 GTATATCATT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 22 0.48
44 24 0.52
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (44 bp):
ATTTAATGTGTTTTAAATTAAATATATATGTATATTGTATTATA
Done.