Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 272 of 311
Found at i:89810851 original size:16 final size:17
Alignment explanation
Indices: 89810830--89810872 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
89810820 TTAAAATAAG
89810830 TTTTTAAATTTT-TATA
1 TTTTTAAATTTTATATA
*
89810846 TTTTTATGATTTTATATA
1 TTTTTA-AATTTTATATA
89810864 TATTTTAAA
1 T-TTTTAAA
89810873 ATAATTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 6 0.27
17 5 0.23
18 6 0.27
19 5 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
TTTTTAAATTTTATATA
Found at i:89813579 original size:16 final size:16
Alignment explanation
Indices: 89813558--89813592 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
89813548 GTTTGTACTT
*
89813558 TTTTCCTTTTTTTTAA
1 TTTTCCCTTTTTTTAA
*
89813574 TTTTCCCTTTTTTTCA
1 TTTTCCCTTTTTTTAA
89813590 TTT
1 TTT
89813593 CTTCTTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTCCCTTTTTTTAA
Found at i:89818498 original size:4 final size:4
Alignment explanation
Indices: 89818489--89818517 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
89818479 AACTCAGCAA
89818489 ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
89818518 ATGTTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:89822336 original size:20 final size:20
Alignment explanation
Indices: 89822313--89822361 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
89822303 ATTTATTTGT
*
89822313 TAAAATAATAATTTTATAAA
1 TAAAATAATAATCTTATAAA
*
89822333 TAAAATCATAATCTTATAAA
1 TAAAATAATAATCTTATAAA
89822353 TAAAATAAT
1 TAAAATAAT
89822362 TTAAGGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAATAATAATCTTATAAA
Found at i:89825039 original size:10 final size:10
Alignment explanation
Indices: 89825024--89825066 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
89825014 CGGCCTAAAG
89825024 AAAACAAATA
1 AAAACAAATA
89825034 AAAACAAATA
1 AAAACAAATA
*
89825044 AAAA-AACTA
1 AAAACAAATA
* *
89825053 AAATCTAATA
1 AAAACAAATA
89825063 AAAA
1 AAAA
89825067 AAACAGAATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.26
10 20 0.74
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (10 bp):
AAAACAAATA
Found at i:89825054 original size:19 final size:19
Alignment explanation
Indices: 89825032--89825068 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
89825022 AGAAAACAAA
89825032 TAAAAACAAATAAAAAAAC
1 TAAAAACAAATAAAAAAAC
* *
89825051 TAAAATCTAATAAAAAAA
1 TAAAAACAAATAAAAAAA
89825069 ACAGAATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (19 bp):
TAAAAACAAATAAAAAAAC
Found at i:89825413 original size:15 final size:17
Alignment explanation
Indices: 89825383--89825416 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
89825373 TTTCTTAGCG
89825383 AATACGAAAAAGAAGAA
1 AATACGAAAAAGAAGAA
89825400 AATAC-AAAAA-AAGAA
1 AATACGAAAAAGAAGAA
89825415 AA
1 AA
89825417 CAACAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 5 0.29
17 5 0.29
ACGTcount: A:0.76, C:0.06, G:0.12, T:0.06
Consensus pattern (17 bp):
AATACGAAAAAGAAGAA
Found at i:89826531 original size:3 final size:3
Alignment explanation
Indices: 89826517--89826546 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
89826507 TTATTCACCT
*
89826517 TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
89826547 CTACTTACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:89835251 original size:26 final size:26
Alignment explanation
Indices: 89835219--89835326 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
89835209 TGAAATGCCC
*
89835219 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
89835245 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
89835271 ATCATGGAATATTTACCTAATCCC-TT
1 ATCATGGAACATTTACCTAA-CCCATT
89835297 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
89835323 ATCA
1 ATCA
89835327 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
25 3 0.04
26 69 0.92
27 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:89839418 original size:17 final size:17
Alignment explanation
Indices: 89839398--89839439 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
89839388 AATAAACAAA
89839398 AATAAAATTTAAATTGC
1 AATAAAATTTAAATTGC
89839415 AATAAAATTTAAATTGC
1 AATAAAATTTAAATTGC
89839432 AATAAAAT
1 AATAAAAT
89839440 AAATTACCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (17 bp):
AATAAAATTTAAATTGC
Found at i:89842147 original size:23 final size:23
Alignment explanation
Indices: 89842114--89842160 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
89842104 TTTTAGAAGG
*
89842114 TAGAAATGGTCTCTTATCGAGTA
1 TAGAAAAGGTCTCTTATCGAGTA
89842137 TAGAAAAGGTCTCTTATCGAGTA
1 TAGAAAAGGTCTCTTATCGAGTA
89842160 T
1 T
89842161 TCTCTGAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (23 bp):
TAGAAAAGGTCTCTTATCGAGTA
Found at i:89852451 original size:18 final size:19
Alignment explanation
Indices: 89852430--89852479 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
89852420 ATGTATTAGA
89852430 TATTAAATAA-ATATTTAT
1 TATTAAATAAGATATTTAT
89852448 TATTTTATAA-AAGATATTTAT
1 TA--TTA-AATAAGATATTTAT
89852469 TAATTAAATAA
1 T-ATTAAATAA
89852480 TTATATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
18 2 0.08
19 2 0.08
20 10 0.38
21 11 0.42
22 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TATTAAATAAGATATTTAT
Found at i:89852720 original size:13 final size:12
Alignment explanation
Indices: 89852698--89852730 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
89852688 CAGGGGAAGG
89852698 AAAG-AAAGAAA
1 AAAGAAAAGAAA
89852709 AAGAGAAAAGAAA
1 AA-AGAAAAGAAA
89852722 AAAGAAAAG
1 AAAGAAAAG
89852731 GGAAAATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 2 0.10
12 9 0.45
13 9 0.45
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAGAAAAGAAA
Found at i:89852736 original size:14 final size:13
Alignment explanation
Indices: 89852702--89852730 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
89852692 GGAAGGAAAG
89852702 AAAGAAAAAGAGA
1 AAAGAAAAAGAGA
89852715 AAAGAAAAA-AGA
1 AAAGAAAAAGAGA
89852727 AAAG
1 AAAG
89852731 GGAAAATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAGAGA
Found at i:89856391 original size:68 final size:68
Alignment explanation
Indices: 89856319--89856468 Score: 173
Period size: 67 Copynumber: 2.2 Consensus size: 68
89856309 CATCATGTGT
* * * *
89856319 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
89856382 TGTAG
64 TGTAG
** * *
89856387 ACAAGAGAGCTAC--GGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
89856450 GTAG
65 GTAG
89856454 ACAAGAGAGCTACAA
1 ACAAGAGAGCTACAA
89856469 AATAAATTGG
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
64 24 0.35
65 3 0.04
66 4 0.06
67 25 0.36
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:89856424 original size:64 final size:64
Alignment explanation
Indices: 89856275--89856526 Score: 181
Period size: 68 Copynumber: 3.8 Consensus size: 64
89856265 TACAGATAGT
* ** * * *
89856275 ATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGACA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACAA-A-A
*
89856338 TTATG
62 -TA-A
* *** *
89856343 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACAAAATAA
* * * * *
89856407 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACAAAAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACAAAAT
89856472 AA
63 AA
* * * *
89856474 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTTTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
89856527 CGAACTATAT
Statistics
Matches: 147, Mismatches: 30, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 25 0.17
65 2 0.01
66 22 0.15
67 32 0.22
68 46 0.31
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACAAAATAA
Found at i:89858846 original size:27 final size:27
Alignment explanation
Indices: 89858816--89859020 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
89858806 ATATTGAGTC
* * * *
89858816 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
89858843 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
89858870 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
89858898 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
89858925 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
89858952 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
89858979 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
89859006 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
89859021 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:89866991 original size:27 final size:27
Alignment explanation
Indices: 89866777--89866981 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
89866767 ATATTGAGTC
* * * *
89866777 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
89866804 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
89866831 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* * *
89866859 CGCACACTTAGTG-TCGCATGGTCAATT
1 CGCACACTTAGTGCT-ACATAGTCAAAT
* **
89866886 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
89866913 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
89866940 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
89866967 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
89866982 GTATAATCAA
Statistics
Matches: 156, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:89872166 original size:21 final size:22
Alignment explanation
Indices: 89872120--89872167 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
89872110 TTAAACCCCA
*
89872120 ATTTCTCCCTTTTCTTTCTTTC
1 ATTTCTCCCTGTTCTTTCTTTC
89872142 -TTTCTCCCCTGTT-TTT-TTTC
1 ATTTCT-CCCTGTTCTTTCTTTC
89872162 ATTTCT
1 ATTTCT
89872168 ATTCTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 4 0.17
21 13 0.57
22 6 0.26
ACGTcount: A:0.04, C:0.29, G:0.02, T:0.65
Consensus pattern (22 bp):
ATTTCTCCCTGTTCTTTCTTTC
Found at i:89877951 original size:13 final size:13
Alignment explanation
Indices: 89877935--89877959 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89877925 TTAAATCTGT
89877935 TAATTAGTTTAAA
1 TAATTAGTTTAAA
89877948 TAATTAGTTTAA
1 TAATTAGTTTAA
89877960 TAAACGAGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:89878856 original size:42 final size:43
Alignment explanation
Indices: 89878792--89878899 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 43
89878782 ATCAACTTGA
* *
89878792 GATTACGTGTAAGACCATGTCTGCGACATCAGCATTG-TATTT
1 GATTACGTGTAAGACCATGTCTGCGACAACAGCATCGATATTT
* * * *
89878834 GATTTCGTGTAAGATCTTGTCTGGGACAACAGCATCGATATTT
1 GATTACGTGTAAGACCATGTCTGCGACAACAGCATCGATATTT
* * *
89878877 GAATACATGTAAGACCACGTCTG
1 GATTACGTGTAAGACCATGTCTG
89878900 AGACGTTGGC
Statistics
Matches: 53, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
42 31 0.58
43 22 0.42
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGCGACAACAGCATCGATATTT
Found at i:89889759 original size:4 final size:4
Alignment explanation
Indices: 89889750--89889796 Score: 53
Period size: 4 Copynumber: 12.0 Consensus size: 4
89889740 ATTTCCCCTT
* *
89889750 TTTC TTTC TTTT TCTTC TTTC TTTC -TTC TTTC TTTC -TTC TTAC TTTC
1 TTTC TTTC TTTC T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
89889797 GAAAGTCTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
3 6 0.17
4 27 0.75
5 3 0.08
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTC
Found at i:89889774 original size:11 final size:11
Alignment explanation
Indices: 89889747--89889796 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 11
89889737 TCTATTTCCC
89889747 CTTT-TTCTTT
1 CTTTCTTCTTT
89889757 CTTTTTCTTCTTT
1 C--TTTCTTCTTT
89889770 CTTTCTTCTTT
1 CTTTCTTCTTT
*
89889781 CTTTCTTCTTA
1 CTTTCTTCTTT
89889792 CTTTC
1 CTTTC
89889797 GAAAGTCTCT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
10 1 0.03
11 25 0.69
12 3 0.08
13 7 0.19
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (11 bp):
CTTTCTTCTTT
Found at i:89894151 original size:40 final size:40
Alignment explanation
Indices: 89894105--89894181 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
89894095 GCACACCATG
* *
89894105 TGGGGATAAAATCAACCCACCCAGCCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCACCCAACCCCACACACCAAGTA
* *
89894145 TGGGGATAGAATCAACCCATCCAACCCCACACACCAA
1 TGGGGATAAAATCAACCCACCCAACCCCACACACCAA
89894182 ATGGTACCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.38, C:0.36, G:0.14, T:0.12
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCCACACACCAAGTA
Found at i:89897136 original size:15 final size:15
Alignment explanation
Indices: 89897091--89897163 Score: 83
Period size: 15 Copynumber: 4.9 Consensus size: 15
89897081 GAGATTACAT
*
89897091 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* * * *
89897106 GTAGTCCAGGACAAA
1 GAAATCCAAGATAAA
*
89897121 GAAATCTAAGATAAA
1 GAAATCCAAGATAAA
*
89897136 GAAATCCAAGATACA
1 GAAATCCAAGATAAA
89897151 GAAATCCAAGATA
1 GAAATCCAAGATA
89897164 CAATATCCTA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.55, C:0.15, G:0.16, T:0.14
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:89905128 original size:7 final size:7
Alignment explanation
Indices: 89905118--89905142 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
89905108 AGATAATACA
89905118 TATCAAG
1 TATCAAG
89905125 TATCAAG
1 TATCAAG
89905132 TATCAAG
1 TATCAAG
89905139 TATC
1 TATC
89905143 TAATGGGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (7 bp):
TATCAAG
Found at i:89905230 original size:9 final size:9
Alignment explanation
Indices: 89905200--89905424 Score: 167
Period size: 9 Copynumber: 25.6 Consensus size: 9
89905190 TATTTATGTA
89905200 TTATGTAAG
1 TTATGTAAG
*
89905209 TTAAGTAAG
1 TTATGTAAG
89905218 TTATGTAAG
1 TTATGTAAG
*
89905227 TTATGATATG
1 TTATG-TAAG
* * *
89905237 ATATAT-AT
1 TTATGTAAG
89905245 TTATGTAAG
1 TTATGTAAG
89905254 TTATGTAAG
1 TTATGTAAG
* *
89905263 TTATAT-AT
1 TTATGTAAG
*
89905271 TTATCTAAG
1 TTATGTAAG
* *
89905280 CTATATAAG
1 TTATGTAAG
89905289 TTATGTAAG
1 TTATGTAAG
*
89905298 TTATGCAAG
1 TTATGTAAG
*
89905307 TTATGATATG
1 TTATG-TAAG
* * *
89905317 ATATAT-AT
1 TTATGTAAG
89905325 TTATGTAAG
1 TTATGTAAG
*
89905334 TTATGTTAG
1 TTATGTAAG
* *
89905343 TTATAT-AT
1 TTATGTAAG
*
89905351 TTATCTAAG
1 TTATGTAAG
89905360 TTATGTAAG
1 TTATGTAAG
*
89905369 TTATGTAAA
1 TTATGTAAG
*
89905378 TTA--T-AT
1 TTATGTAAG
*
89905384 TTATATAAG
1 TTATGTAAG
*
89905393 TTATATAAG
1 TTATGTAAG
*
89905402 TTATGTAAA
1 TTATGTAAG
89905411 TTATGTAAG
1 TTATGTAAG
89905420 TTATG
1 TTATG
89905425 ATATGATATA
Statistics
Matches: 167, Mismatches: 40, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
6 4 0.02
7 1 0.01
8 21 0.13
9 130 0.78
10 11 0.07
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:89905290 original size:80 final size:80
Alignment explanation
Indices: 89905205--89905428 Score: 303
Period size: 80 Copynumber: 2.8 Consensus size: 80
89905195 ATGTATTATG
*
89905205 TAAGTTAAGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATATA
1 TAAGTTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATATA
89905270 TTTATCTAAGCTATA
66 TTTATCTAAGCTATA
* *
89905285 TAAGTTATGTAAGTTATGCAAGTTATGATATGATATATATTTATGTAAGTTATGTTAGTTATATA
1 TAAGTTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATATA
* *
89905350 TTTATCTAAGTTATG
66 TTTATCTAAGCTATA
* * * * * *
89905365 TAAGTTATGTAAATTA--T-ATTTAT-ATAAGTTATATAAGTTATGTAAATTATGTAAGTTATGA
1 TAAGTTATGTAAGTTATGTAAGTTATGATATGATATAT-ATTTATGTAAGTTATGTAAGTTAT-A
89905426 TAT
64 TAT
89905429 GATATATATT
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
76 9 0.07
77 26 0.20
78 4 0.03
80 90 0.70
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (80 bp):
TAAGTTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATATA
TTTATCTAAGCTATA
Found at i:89905405 original size:42 final size:41
Alignment explanation
Indices: 89905343--89905423 Score: 117
Period size: 42 Copynumber: 2.0 Consensus size: 41
89905333 GTTATGTTAG
* * *
89905343 TTATATATTTATCTAAGTTATGTAAGTTATGTAAATTATAT
1 TTATATAGTTATATAAGTTATGTAAATTATGTAAATTATAT
*
89905384 TTATATAAGTTATATAAGTTATGTAAATTATGTAAGTTAT
1 TTATAT-AGTTATATAAGTTATGTAAATTATGTAAATTAT
89905424 GATATGATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
41 6 0.17
42 29 0.83
ACGTcount: A:0.38, C:0.01, G:0.11, T:0.49
Consensus pattern (41 bp):
TTATATAGTTATATAAGTTATGTAAATTATGTAAATTATAT
Found at i:89905415 original size:113 final size:116
Alignment explanation
Indices: 89905213--89905440 Score: 338
Period size: 113 Copynumber: 2.0 Consensus size: 116
89905203 TGTAAGTTAA
* * *
89905213 GTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATATATTTATCTA
1 GTAAGTTATGTAAGTTATGATATGATATATAGTTATGTAAGTTATGTAAGATATATATTTATATA
*
89905278 AGCTATATAAGTTATGTAAGTTATGCAAGTTATGATATGATATATATTTAT
66 AGCTATATAAGTTATGTAAATTATGCAAGTTATGATATGATATATATTTAT
* * *
89905329 GTAAGTTATGTTAGTTAT-ATAT-TTATCTAAGTTATGTAAGTTATGTAA-AT-TATATTTATAT
1 GTAAGTTATGTAAGTTATGATATGATATAT-AGTTATGTAAGTTATGTAAGATATATATTTATAT
* *
89905390 AAGTTATATAAGTTATGTAAATTATGTAAGTTATGATATGATATATATTTA
65 AAGCTATATAAGTTATGTAAATTATGCAAGTTATGATATGATATATATTTA
89905441 ACATTAAGAT
Statistics
Matches: 102, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
113 58 0.57
114 5 0.05
115 22 0.22
116 17 0.17
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.47
Consensus pattern (116 bp):
GTAAGTTATGTAAGTTATGATATGATATATAGTTATGTAAGTTATGTAAGATATATATTTATATA
AGCTATATAAGTTATGTAAATTATGCAAGTTATGATATGATATATATTTAT
Found at i:89906154 original size:23 final size:23
Alignment explanation
Indices: 89906124--89906169 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
89906114 CTTTTTTATT
89906124 ATTATCAAATGAA-TTTTCTTAAC
1 ATTATCAAAT-AAGTTTTCTTAAC
89906147 ATTATCAAATAAGTTTTCTTAAC
1 ATTATCAAATAAGTTTTCTTAAC
89906170 CAAATACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.43
Consensus pattern (23 bp):
ATTATCAAATAAGTTTTCTTAAC
Found at i:89906869 original size:24 final size:24
Alignment explanation
Indices: 89906842--89906888 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
89906832 GAAGCAGCAG
* *
89906842 AGGGATGCCGACGGAGATGTAGCT
1 AGGGATGACGACGGAAATGTAGCT
89906866 AGGGATGACGACGGAAATGTAGC
1 AGGGATGACGACGGAAATGTAGC
89906889 AGAGGGCTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.15, G:0.40, T:0.15
Consensus pattern (24 bp):
AGGGATGACGACGGAAATGTAGCT
Found at i:89907033 original size:14 final size:14
Alignment explanation
Indices: 89907014--89907058 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
89907004 AACAACCCAA
89907014 GATATATGCATATT
1 GATATATGCATATT
89907028 GATATATG--TA-T
1 GATATATGCATATT
*
89907039 -ACATATGCATATT
1 GATATATGCATATT
89907052 GATATAT
1 GATATAT
89907059 ATACATTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
10 6 0.24
11 1 0.04
12 4 0.16
13 1 0.04
14 13 0.52
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (14 bp):
GATATATGCATATT
Found at i:89908730 original size:39 final size:39
Alignment explanation
Indices: 89908676--89908815 Score: 201
Period size: 39 Copynumber: 3.6 Consensus size: 39
89908666 GCTCTAATGA
* *
89908676 GCTTCAGTTAGCCTTCGGGCTTCCGTTTGGCACTTGTGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
89908715 GCTTCAGTCAGCCTTCAGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
89908754 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
89908793 GCTTCAG-CTAGACTTCGGGCTTC
1 GCTTCAGTC-AGCCTTCGGGCTTC
89908816 AGATTACGAT
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.11, C:0.28, G:0.25, T:0.36
Consensus pattern (39 bp):
GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:89909543 original size:28 final size:28
Alignment explanation
Indices: 89909500--89909565 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
89909490 GAGTTTTTTT
*
89909500 AAATAATAATAATAATAAAATAAAC-AAAA
1 AAATAA-AAAAATAATAAAAT-AACGAAAA
* * *
89909529 AAATAAAAAAATAATTATATTACGAAAA
1 AAATAAAAAAATAATAAAATAACGAAAA
89909557 AAATAAAAA
1 AAATAAAAA
89909566 TTTCGGAGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 2 0.06
28 24 0.75
29 6 0.19
ACGTcount: A:0.74, C:0.03, G:0.02, T:0.21
Consensus pattern (28 bp):
AAATAAAAAAATAATAAAATAACGAAAA
Found at i:89912282 original size:55 final size:56
Alignment explanation
Indices: 89912217--89912321 Score: 126
Period size: 55 Copynumber: 1.9 Consensus size: 56
89912207 AGCATGGCTG
* *
89912217 CCAGATACAGA-AAATGTGACAGAG-TCACCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGATAAATGTGACAGGGCT-ACCAGA-ACAGATAATTTGTGGCAGTGCCA
* * *
89912273 CCAGA-ACAGATATATGTGGCCGGGCTACCAGAACAGATAATTTGTGGCA
1 CCAGATACAGATAAATGTGACAGGGCTACCAGAACAGATAATTTGTGGCA
89912322 TAACCACCAG
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
55 21 0.50
56 20 0.48
57 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGGGCTACCAGAACAGATAATTTGTGGCAGTGCCA
Found at i:89912302 original size:27 final size:27
Alignment explanation
Indices: 89912242--89912321 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
89912232 GTGACAGAGT
*
89912242 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
* *
89912271 CACCAGAACAGATATATGTGGCCGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
*
89912298 TACCAGAACAGATAATTTGTGGCA
1 CACCAGAACAGAT-ATTTGTGGCA
89912322 TAACCACCAG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 22 0.50
28 15 0.34
29 7 0.16
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:89912330 original size:28 final size:27
Alignment explanation
Indices: 89912242--89912331 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
89912232 GTGACAGAGT
*
89912242 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* **
89912271 CACCAGAACAGAT-ATATGTGGCCGGGC
1 CACCAGAACAGATAATTTGTGG-CATGC
* *
89912298 TACCAGAACAGATAATTTGTGGCATAAC
1 CACCAGAACAGATAATTTGTGGCAT-GC
89912326 CACCAG
1 CACCAG
89912332 GACGCTTCTT
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
27 21 0.44
28 20 0.42
29 7 0.15
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:89912484 original size:28 final size:28
Alignment explanation
Indices: 89912437--89912557 Score: 206
Period size: 28 Copynumber: 4.3 Consensus size: 28
89912427 AAATTAACCC
* * *
89912437 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATTATGGTAATTTTGCATACA
89912465 TAGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATTATGGTAATTTTGCATACA
*
89912493 TGGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATTATGGTAATTTTGCATACA
89912521 TAGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATTATGGTAATTTTGCATACA
89912549 TAGGGGTAT
1 TAGGGGTAT
89912558 AATAGTACAT
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 88 1.00
ACGTcount: A:0.28, C:0.07, G:0.27, T:0.37
Consensus pattern (28 bp):
TAGGGGTATTATGGTAATTTTGCATACA
Found at i:89912679 original size:19 final size:19
Alignment explanation
Indices: 89912655--89912709 Score: 92
Period size: 19 Copynumber: 2.8 Consensus size: 19
89912645 ATTGGGCCTG
89912655 TTGGCCCATTAACCCAGTT
1 TTGGCCCATTAACCCAGTT
*
89912674 TTGGCCTATTAACCCAGTT
1 TTGGCCCATTAACCCAGTT
89912693 TTGGCCCATTAAGCCCA
1 TTGGCCCATTAA-CCCA
89912710 AAATATTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 29 0.88
20 4 0.12
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (19 bp):
TTGGCCCATTAACCCAGTT
Found at i:89913660 original size:5 final size:5
Alignment explanation
Indices: 89913640--89913678 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
89913630 AAGATAGATG
* *
89913640 AAGAA AA-AA GAGAA AAGAA AAGAA AAGAA AGGAA AAGAA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA
89913679 GGAAGAATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 3 0.10
5 26 0.90
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:89915243 original size:18 final size:17
Alignment explanation
Indices: 89915191--89915241 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
89915181 GACAAATGGG
*
89915191 TTTGATTTTGGGGAAAT
1 TTTGATTTAGGGGAAAT
* *
89915208 TTAGGGTTTAGGGGAAAT
1 TT-TGATTTAGGGGAAAT
*
89915226 TTTGATTTGGGGGAAA
1 TTTGATTTAGGGGAAA
89915242 ATAAGGGTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.25, C:0.00, G:0.35, T:0.39
Consensus pattern (17 bp):
TTTGATTTAGGGGAAAT
Found at i:89915453 original size:40 final size:40
Alignment explanation
Indices: 89915359--89915460 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
89915349 TAATTAAACT
** *
89915359 TTTAGCGGCATTTTTACAAAAGTGCCGCTAAATCTCAATC
1 TTTAGCGGCATTTTTACAAAAACGCAGCTAAATCTCAATC
* * * *
89915399 TTTTGCAGCGTTTTTACAAAAACGCAGCTAATTCTCAATC
1 TTTAGCGGCATTTTTACAAAAACGCAGCTAAATCTCAATC
* *
89915439 TTTAGTGGCATTTTTAAAAAAA
1 TTTAGCGGCATTTTTACAAAAA
89915461 TGCCACTACT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (40 bp):
TTTAGCGGCATTTTTACAAAAACGCAGCTAAATCTCAATC
Found at i:89916428 original size:22 final size:21
Alignment explanation
Indices: 89916386--89916446 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 21
89916376 TTTAATTAAT
*
89916386 TAACCCTTAAACCCTATACAC
1 TAACCCTTAAACCCTAAACAC
*
89916407 TAACCCTTAAAACCTTAAACAC
1 TAACCCTT-AAACCCTAAACAC
89916429 TAAGACCC-TAAACCCTAA
1 T-A-ACCCTTAAACCCTAA
89916447 GTATTTTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 8 0.24
22 20 0.59
23 2 0.06
24 4 0.12
ACGTcount: A:0.43, C:0.34, G:0.02, T:0.21
Consensus pattern (21 bp):
TAACCCTTAAACCCTAAACAC
Found at i:89916598 original size:38 final size:36
Alignment explanation
Indices: 89916528--89916607 Score: 117
Period size: 38 Copynumber: 2.2 Consensus size: 36
89916518 CCCAACCCAT
*
89916528 ACCATAAACTTAACATACTATACCATTGAACCCTAA
1 ACCATAAACTTAAAATACTATACCATTGAACCCTAA
89916564 ACCATAAACTTAAAATA-TATTCTACCATTGAACCCTAA
1 ACCATAAACTTAAAATACTA---TACCATTGAACCCTAA
89916602 ACCATA
1 ACCATA
89916608 GGCCTTAAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 2 0.05
36 16 0.40
38 22 0.55
ACGTcount: A:0.45, C:0.26, G:0.03, T:0.26
Consensus pattern (36 bp):
ACCATAAACTTAAAATACTATACCATTGAACCCTAA
Found at i:89924481 original size:278 final size:277
Alignment explanation
Indices: 89923934--89924491 Score: 1107
Period size: 278 Copynumber: 2.0 Consensus size: 277
89923924 CTCCAATCCC
89923934 GATATGATCAATTGAACTTGATTGATGAGAAAAGGTGGAAAGCCATTTGGCAAGGTTAAATGTAC
1 GATATGATCAATTGAACTTGATTGATGAGAAAAGGTGGAAAGCCATTTGGCAAGGTTAAATGTAC
89923999 CAAAACGAATGATAGCTTATAACAAAAATGTTCATCCTAGGGAATTCCATGAGGGAGACCTAGTA
66 CAAAACGAATGATAGCTTATAACAAAAATGTTCATCCTAGGGAATTCCATGAGGGAGACCTAGTA
89924064 TTGAAAAGATCTTGACCATACAAAAGTACTTTAGAGGGAAATGGATGCCGAATTAGAAGGACCTT
131 TTGAAAAGATCTTGACCATACAAAAGTACTTTAGAGGGAAATGGATGCCGAATTAGAAGGACCTT
89924129 ATATGGTAAAGAAGGCCTTTTTTGGAGGAGCACTGATTCTTACTGAAATGGAGGGCAAAACTTGC
196 ATATGGTAAAGAAGGCCTTTTTTGGAGGAGCACTGATTCTTACTGAAATGGAGGGCAAAACTTGC
89924194 CTAATATAGTGAATTTG
261 CTAATATAGTGAATTTG
89924211 GATATGATCAATTGAACTTGATTGATGAGAAAAGGTGGAAAGCCATTTGGCAAGGTTAAATGTAC
1 GATATGATCAATTGAACTTGATTGATGAGAAAAGGTGGAAAGCCATTTGGCAAGGTTAAATGTAC
89924276 CAAAACGAATGATAGCTTATAACAAAAATGTTCATCCTAGGGAATTCCATGAGGGAGACCTAGTA
66 CAAAACGAATGATAGCTTATAACAAAAATGTTCATCCTAGGGAATTCCATGAGGGAGACCTAGTA
89924341 TTGAAAAAGATCTTGACCATACAAAAGTACTTTAGAGGGAAATGGATGCCGAATTAGAAGGACCT
131 TTG-AAAAGATCTTGACCATACAAAAGTACTTTAGAGGGAAATGGATGCCGAATTAGAAGGACCT
89924406 TATATGGTAAAGAAGGCCTTTTTTGGAGGAGCACTGATTCTTACTGAAATGGAGGGCAAAACTTG
195 TATATGGTAAAGAAGGCCTTTTTTGGAGGAGCACTGATTCTTACTGAAATGGAGGGCAAAACTTG
89924471 CCTAATATAGTGAATTTG
260 CCTAATATAGTGAATTTG
89924489 GAT
1 GAT
89924492 TCAGTTAAGA
Statistics
Matches: 280, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
277 133 0.47
278 147 0.52
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.27
Consensus pattern (277 bp):
GATATGATCAATTGAACTTGATTGATGAGAAAAGGTGGAAAGCCATTTGGCAAGGTTAAATGTAC
CAAAACGAATGATAGCTTATAACAAAAATGTTCATCCTAGGGAATTCCATGAGGGAGACCTAGTA
TTGAAAAGATCTTGACCATACAAAAGTACTTTAGAGGGAAATGGATGCCGAATTAGAAGGACCTT
ATATGGTAAAGAAGGCCTTTTTTGGAGGAGCACTGATTCTTACTGAAATGGAGGGCAAAACTTGC
CTAATATAGTGAATTTG
Found at i:89925493 original size:44 final size:45
Alignment explanation
Indices: 89925423--89925910 Score: 417
Period size: 44 Copynumber: 11.1 Consensus size: 45
89925413 CACCGTGGCG
* * *
89925423 AATCTTATCTCCCT-AAATTTACAGTGGAGCAGATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATTAAAGCTACA
* * * *
89925467 AATCTTATCCCCCTGAA-TTCATAGTGGAGCATATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATTAAAGCTACA
* *
89925511 AATCTTATCTCCTTGAAGTT-GCAGTGGAGCAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATTAAAGCTACA
* *
89925555 AATCTTATTTCCCTGAAGTT-ACAGTGGAACAGATTGAAA-CTACA
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATT-AAAGCTACA
* * *
89925599 AATCTTATCTCCCTAAAGTT-ACAGTGGAACAGATTGAAA-CGACA
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATT-AAAGCTACA
* * * **
89925643 AATCTTATCTCCCTGAAGTT-GCAGTGGAGCAGATTGAAGATATG
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATTAAAGCTACA
* * * * * * * *
89925687 AGTATCATCTCCCTGAAGCT-ATAGTTGAGCAGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATTAAAGCTACA
* ** *
89925731 AATCTTATCTCCTTGAAGTT-GTAGTGGAGCAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATTAAAGCTACA
* * * * * *
89925775 AATCTTATCTCCCTGAAGTT-GCAGTGAAGTAGATTGAAGATACG
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATTAAAGCTACA
* * * *
89925819 AGTCTCATCTCCTTGAAGTT-ACAGGGGAGCAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATTAAAGCTACA
* * * * * * * * *
89925863 AGTCTAATCTTCTTGAAGTT-GCAGTAGAGTAGATTGAAGCAACA
1 AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATTAAAGCTACA
89925907 AATC
1 AATC
89925911 CTATACCTCT
Statistics
Matches: 369, Mismatches: 71, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
43 2 0.01
44 360 0.98
45 7 0.02
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (45 bp):
AATCTTATCTCCCTGAAGTTCACAGTGGAGCAGATTAAAGCTACA
Found at i:89925538 original size:88 final size:88
Alignment explanation
Indices: 89925423--89925910 Score: 478
Period size: 88 Copynumber: 5.5 Consensus size: 88
89925413 CACCGTGGCG
* * * *
89925423 AATCTTATCTCCCTAAATTTACAGTGGAGCAGATTAAAGCCACAAATCTTATCCCCCTGAA-TTC
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTT-
* * *
89925487 ATAGTGGAGCATATTAAAGTTACA
65 ACAGTGGAGCAGATTAAAGCTACA
* * *
89925511 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATTTCCCTGAAGTTA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTA
*
89925576 CAGTGGAACAGATTGAAA-CTACA
66 CAGTGGAGCAGATT-AAAGCTACA
* * *
89925599 AATCTTATCTCCCTAAAGTTACAGTGGAACAGATTGAAA-CGACAAATCTTATCTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAGCTACAAATCTTATCTCCCTGAAGTT
* * * **
89925663 GCAGTGGAGCAGATTGAAGATATG
65 ACAGTGGAGCAGATTAAAGCTACA
* * * * * * * * * *
89925687 AGTATCATCTCCCTGAAGCTATAGTTGAGCAGATTGAAGTTACAAATCTTATCTCCTTGAAGTTG
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTA
* *
89925752 TAGTGGAGCAGATTAAAGTTACA
66 CAGTGGAGCAGATTAAAGCTACA
* * * * * * * * *
89925775 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATACGAGTCTCATCTCCTTGAAGTTA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTA
*
89925840 CAGGGGAGCAGATTAAAGCTACA
66 CAGTGGAGCAGATTAAAGCTACA
* * * * * * * * *
89925863 AGTCTAATCTTCTTGAAGTTGCAGTAGAGTAGATTGAAGCAACAAATC
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATC
89925911 CTATACCTCT
Statistics
Matches: 328, Mismatches: 67, Indels: 10
0.81 0.17 0.02
Matches are distributed among these distances:
87 4 0.01
88 316 0.96
89 8 0.02
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTA
CAGTGGAGCAGATTAAAGCTACA
Found at i:89925625 original size:132 final size:132
Alignment explanation
Indices: 89925421--89925882 Score: 545
Period size: 132 Copynumber: 3.5 Consensus size: 132
89925411 GTCACCGTGG
* * * * *
89925421 CGAATCTTATCTCCCTAAATTTACAGTGGAGCAGATTAAAGCCACAAATCTTATCCCCCTGAA-T
1 CGAATCTCATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGT
* * *
89925485 TCATAGTGGAGCATATTAAAGTTACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAG
66 T-ATAGTGGAGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
*
89925550 CTA
130 ATA
* * * * *
89925553 CAAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTGAAA-CTACAAATCTTATCTCCCTAAAG
1 CGAATCTCATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAGCTACAAATCTTATCTCCCTGAAG
* *
89925617 TTACAGTGGAACAGATTGAAACG--ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
65 TTATAGTGGAGCAGATT-AAA-GTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
89925680 AGATA
128 AGATA
* * * * * * * * *
89925685 TGAGTATCATCTCCCTGAAGCTATAGTTGAGCAGATTGAAGTTACAAATCTTATCTCCTTGAAGT
1 CGAATCTCATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGT
* * *
89925750 TGTAGTGGAGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGA
66 TATAGTGGAGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
89925815 TA
131 TA
* * * * * * *
89925817 CGAGTCTCATCTCCTTGAAGTTACAGGGGAGCAGATTAAAGCTACAAGTCTAATCTTCTTGAAGT
1 CGAATCTCATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGT
89925882 T
66 T
89925883 GCAGTAGAGT
Statistics
Matches: 278, Mismatches: 45, Indels: 14
0.82 0.13 0.04
Matches are distributed among these distances:
130 1 0.00
131 5 0.02
132 263 0.95
133 8 0.03
134 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (132 bp):
CGAATCTCATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGT
TATAGTGGAGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
TA
Found at i:89925883 original size:132 final size:132
Alignment explanation
Indices: 89925429--89925933 Score: 543
Period size: 132 Copynumber: 3.8 Consensus size: 132
89925419 GGCGAATCTT
* * * * *
89925429 ATCTCCCTAAATTTACAGTGGAGCAGATTAAAGCCACAAATCTTATCCCCCTGAA-TTCATAGTG
1 ATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTT-ACAGTG
* * * * * *
89925493 GAGCATATTAAAGTTACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAT
65 GAGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGAGT
*
89925558 CTT
130 CTC
* * *
89925561 ATTTCCCTGAAGTTACAGTGGAACAGATTGAAA-CTACAAATCTTATCTCCCTAAAGTTACAGTG
1 ATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAGCTACAAATCTTATCTCCCTGAAGTTACAGTG
* *
89925625 GAACAGATTGAAACG--ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATATGA
65 GAGCAGATT-AAA-GTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGA
*
89925688 GTATC
128 GTCTC
* * * * * * **
89925693 ATCTCCCTGAAGCTATAGTTGAGCAGATTGAAGTTACAAATCTTATCTCCTTGAAGTTGTAGTGG
1 ATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTACAGTGG
* *
89925758 AGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATACGAGTC
66 AGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGAGTC
89925823 TC
131 TC
* * * * * * * *
89925825 ATCTCCTTGAAGTTACAGGGGAGCAGATTAAAGCTACAAGTCTAATCTTCTTGAAGTTGCAGTAG
1 ATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTACAGTGG
* * ** * * *
89925890 AGTAGATTGAAGCAACAAATCCTATAC-CTCTAAAGTTGCAGTGG
66 AGCAGATTAAAGTTACAAATCTTAT-CTCCCTGAAGTTGCAGTGG
89925934 GTTAGAATGA
Statistics
Matches: 311, Mismatches: 54, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
130 1 0.00
131 5 0.02
132 295 0.95
133 9 0.03
134 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (132 bp):
ATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTACAGTGG
AGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGAGTC
TC
Found at i:89927294 original size:10 final size:10
Alignment explanation
Indices: 89927281--89927319 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
89927271 ATATGTGAAT
89927281 ATATCATGGC
1 ATATCATGGC
89927291 ATATCATGTGC
1 ATATCATG-GC
89927302 ATATCATGGC
1 ATATCATGGC
89927312 ATATCATG
1 ATATCATG
89927320 TACAAAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:89927307 original size:21 final size:21
Alignment explanation
Indices: 89927281--89927320 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
89927271 ATATGTGAAT
89927281 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
89927302 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
89927321 ACAAAAACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:89930402 original size:41 final size:41
Alignment explanation
Indices: 89930117--89930386 Score: 379
Period size: 41 Copynumber: 6.6 Consensus size: 41
89930107 TTAAACAGAT
** * * *
89930117 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
89930159 -CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
89930199 TCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
89930240 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
89930281 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
89930322 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
89930361 CTTCACCGGCATTAAGCCTGCTAGAC
1 --TCACCGGCATTAAGCCTGCTAGAC
89930387 GTAACGTCCG
Statistics
Matches: 214, Mismatches: 8, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
39 2 0.01
40 8 0.04
41 200 0.93
42 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:89938062 original size:41 final size:41
Alignment explanation
Indices: 89937777--89938046 Score: 379
Period size: 41 Copynumber: 6.6 Consensus size: 41
89937767 TTAAACAGAT
** * * *
89937777 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
89937819 -CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
89937859 TCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
89937900 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
89937941 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
89937982 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
89938021 CTTCACCGGCATTAAGCCTGCTAGAC
1 --TCACCGGCATTAAGCCTGCTAGAC
89938047 GTAACGTCCG
Statistics
Matches: 214, Mismatches: 8, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
39 2 0.01
40 8 0.04
41 200 0.93
42 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:89939584 original size:13 final size:13
Alignment explanation
Indices: 89939566--89939590 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89939556 CAATCAAATG
89939566 CACACAAAATAAA
1 CACACAAAATAAA
89939579 CACACAAAATAA
1 CACACAAAATAA
89939591 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:89942209 original size:55 final size:55
Alignment explanation
Indices: 89942121--89942230 Score: 193
Period size: 55 Copynumber: 2.0 Consensus size: 55
89942111 CTCTCAGTTA
*
89942121 GTCGAACAGATCGTCGATTCTTGGCAAATGATACATGTTCTTGATCGTCAGCTTG
1 GTCGAACAGATCGTCGATTCTTGGCAAAGGATACATGTTCTTGATCGTCAGCTTG
* *
89942176 GTCGAACAGATCGTCGATTCTTGGCAAAGGATACTTGTTCTTGATTGTCAGCTTG
1 GTCGAACAGATCGTCGATTCTTGGCAAAGGATACATGTTCTTGATCGTCAGCTTG
89942231 TTCAGCTGCC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (55 bp):
GTCGAACAGATCGTCGATTCTTGGCAAAGGATACATGTTCTTGATCGTCAGCTTG
Found at i:89945320 original size:29 final size:30
Alignment explanation
Indices: 89945268--89945326 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
89945258 TTTCAGTATA
* *
89945268 TACTGGGCTGAAGTCTTTCATTTAA-CGGT
1 TACTGGGCCGAAGCCTTTCATTTAATCGGT
89945297 TACTGGGCCGAAGCCTTT-ACTTTAATCGGT
1 TACTGGGCCGAAGCCTTTCA-TTTAATCGGT
89945327 ATGGCCCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.04
29 21 0.81
30 4 0.15
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (30 bp):
TACTGGGCCGAAGCCTTTCATTTAATCGGT
Found at i:89945636 original size:10 final size:10
Alignment explanation
Indices: 89945623--89945661 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
89945613 ATATGTGAAT
89945623 ATATCATGGC
1 ATATCATGGC
89945633 ATATCATGTGC
1 ATATCATG-GC
89945644 ATATCATGGC
1 ATATCATGGC
89945654 ATATCATG
1 ATATCATG
89945662 TACAAAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:89945649 original size:21 final size:21
Alignment explanation
Indices: 89945623--89945662 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
89945613 ATATGTGAAT
89945623 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
89945644 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
89945663 ACAAAAACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:89948615 original size:12 final size:12
Alignment explanation
Indices: 89948600--89948637 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
89948590 GTATAGATTT
*
89948600 TTTTATATATTA
1 TTTTATTTATTA
89948612 TTTTATTTATT-
1 TTTTATTTATTA
89948623 TATTTATTTATTA
1 T-TTTATTTATTA
89948636 TT
1 TT
89948638 CCTTTACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
11 1 0.04
12 21 0.91
13 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTATTTATTA
Found at i:89948804 original size:3 final size:3
Alignment explanation
Indices: 89948796--89948837 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
89948786 ACTTGCACCT
89948796 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
89948838 CTACTACTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:89951655 original size:13 final size:13
Alignment explanation
Indices: 89951639--89951689 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
89951629 TTTAAACCAA
89951639 ACTTTTCAAAAAC
1 ACTTTTCAAAAAC
* *
89951652 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAAC
*
89951665 ACTTTTCAAAAGC
1 ACTTTTCAAAAAC
89951678 ACTTTTCAAAAA
1 ACTTTTCAAAAA
89951690 TATTGCCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 5 0.16
13 22 0.69
14 5 0.16
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAAC
Found at i:89953805 original size:2 final size:2
Alignment explanation
Indices: 89953800--89953854 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
89953790 CTGACCCCCC
*
89953800 CT CT CT CT CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
89953842 CT TT CT CT CT CT C
1 CT CT CT CT CT CT C
89953855 GTACAGTAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:89959091 original size:58 final size:58
Alignment explanation
Indices: 89959022--89959136 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 58
89959012 AAGTGATAGA
** *
89959022 TGAAAAATCTTATATGCTAGGTCTATTGCAGAAATAGCTTAAGAATATAAAGCAATTG
1 TGAAAAATCTTATATGCTAGGTCTATCACAGAAATAGCTCAAGAATATAAAGCAATTG
*
89959080 TGAAAAATCTTATATGTTAGGTCTATCACAGAAATAGCTCAAGAATATAAAGCAATT
1 TGAAAAATCTTATATGCTAGGTCTATCACAGAAATAGCTCAAGAATATAAAGCAATT
89959137 CAAGTGAGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (58 bp):
TGAAAAATCTTATATGCTAGGTCTATCACAGAAATAGCTCAAGAATATAAAGCAATTG
Found at i:89968188 original size:92 final size:92
Alignment explanation
Indices: 89968031--89968221 Score: 364
Period size: 92 Copynumber: 2.1 Consensus size: 92
89968021 TCGTATTTTG
*
89968031 GAGATTCGAGAAATCTTACCCTAACTTACGGGGTTTCGATTTTTCTCGTTGAACGTAAATAACCA
1 GAGATTCGAGAAATCTTACCCTAACTTACGGGGTTTCGATTTTTCTCGTTGAACATAAATAACCA
89968096 AATATCCTTTTTAAAATTAAAATACAT
66 AATATCCTTTTTAAAATTAAAATACAT
*
89968123 GAGATTCGAGAAATCTTATCCTAACTTACGGGGTTTCGATTTTTCTCGTTGAACATAAATAACCA
1 GAGATTCGAGAAATCTTACCCTAACTTACGGGGTTTCGATTTTTCTCGTTGAACATAAATAACCA
89968188 AATATCCTTTTTAAAATTAAAATACAT
66 AATATCCTTTTTAAAATTAAAATACAT
89968215 GAGATTC
1 GAGATTC
89968222 TAAATAAAAA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 97 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (92 bp):
GAGATTCGAGAAATCTTACCCTAACTTACGGGGTTTCGATTTTTCTCGTTGAACATAAATAACCA
AATATCCTTTTTAAAATTAAAATACAT
Found at i:89980606 original size:29 final size:29
Alignment explanation
Indices: 89980564--89980626 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
89980554 AATAAATAAG
89980564 CACTTCTCGGGAGGCAACCCGAGCATTAC
1 CACTTCTCGGGAGGCAACCCGAGCATTAC
*
89980593 CACTTCTCGGGAGGCAACCTGAGCATTAC
1 CACTTCTCGGGAGGCAACCCGAGCATTAC
89980622 CACTT
1 CACTT
89980627 AAGATTGGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.24, C:0.33, G:0.22, T:0.21
Consensus pattern (29 bp):
CACTTCTCGGGAGGCAACCCGAGCATTAC
Found at i:89980894 original size:330 final size:330
Alignment explanation
Indices: 89980293--89980921 Score: 1141
Period size: 330 Copynumber: 1.9 Consensus size: 330
89980283 CACCAAATCA
89980293 ACTTAAGATTGGAGACAAAATACTACTAGATGCAACAAATCCTCGCATTACCACTTCTGAACCTA
1 ACTTAAGATTGGAGACAAAATACTACTAGATGCAACAAATCCTCGCATTACCACTTCTGAACCTA
*
89980358 ATGAAGAAATTCCTCTTACGGTACTCAGTATTTTCCCATATGGTACAGTAGAGGTAAATCATCCC
66 ATGAAGAAATTCCTCTTACGATACTCAGTATTTTCCCATATGGTACAGTAGAGGTAAATCATCCC
*
89980423 AAATTCAGCACATTTAAGGTAAACAATACTCGTCTTAAACCTTATGTTGATAAGGTTTATAGCAG
131 AAATTCAGCACATTTAAGGTAAACAATACTCGTCTTAAACATTATGTTGATAAGGTTTATAGCAG
* *
89980488 GGATGAGGATTGTAAACTCCTCACACCACCTTGACCATGCAAAAGTGAGGTAAGTCGAGCTTAGA
196 GGATGAGGACTATAAACTCCTCACACCACCTTGACCATGCAAAAGTGAGGTAAGTCGAGCTTAGA
*
89980553 CAATAAATAAGCACTTCTCGGGAGGCAACCCGAGCATTACCACTTCTCGGGAGGCAACCTGAGCA
261 CAATAAATAAGCACTTCTCGGGAGGCAACCCAAGCATTACCACTTCTCGGGAGGCAACCTGAGCA
89980618 TTACC
326 TTACC
* *
89980623 ACTTAAGATTGGAGACAAAGTACTACTGGATGCAACAAATCCTCGCATTACCACTTCTGAACCTA
1 ACTTAAGATTGGAGACAAAATACTACTAGATGCAACAAATCCTCGCATTACCACTTCTGAACCTA
*
89980688 ATGAATAAATTCCTCTTACGATACTCAGTATTTTCCCATATGGTACAGTAGAGGTAAATCATCCC
66 ATGAAGAAATTCCTCTTACGATACTCAGTATTTTCCCATATGGTACAGTAGAGGTAAATCATCCC
* *
89980753 AAATTCGGCACATTTAAGGTAAGCAATACTCGTCTTAAACATTATGTTGATAAGGTTTATAGCAG
131 AAATTCAGCACATTTAAGGTAAACAATACTCGTCTTAAACATTATGTTGATAAGGTTTATAGCAG
* *
89980818 GGATGAGGACTATAAACTCCTCACTCCACCTTGACCATGCAAAAGTTAGGTAAGTCGAGCTTAGA
196 GGATGAGGACTATAAACTCCTCACACCACCTTGACCATGCAAAAGTGAGGTAAGTCGAGCTTAGA
*
89980883 CAATAAATAAGCACTTCTCGGGAGGCATCCCAAGCATTA
261 CAATAAATAAGCACTTCTCGGGAGGCAACCCAAGCATTA
89980922 ACAGTGTTAA
Statistics
Matches: 286, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
330 286 1.00
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (330 bp):
ACTTAAGATTGGAGACAAAATACTACTAGATGCAACAAATCCTCGCATTACCACTTCTGAACCTA
ATGAAGAAATTCCTCTTACGATACTCAGTATTTTCCCATATGGTACAGTAGAGGTAAATCATCCC
AAATTCAGCACATTTAAGGTAAACAATACTCGTCTTAAACATTATGTTGATAAGGTTTATAGCAG
GGATGAGGACTATAAACTCCTCACACCACCTTGACCATGCAAAAGTGAGGTAAGTCGAGCTTAGA
CAATAAATAAGCACTTCTCGGGAGGCAACCCAAGCATTACCACTTCTCGGGAGGCAACCTGAGCA
TTACC
Found at i:89989848 original size:47 final size:47
Alignment explanation
Indices: 89989715--89989885 Score: 193
Period size: 47 Copynumber: 3.6 Consensus size: 47
89989705 ATAGTAAAAC
* * * *
89989715 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTACACAGTAG-CACATATCAC--ACCGATGCCATATCCCAGA
* * *
89989764 TATGGTCTTACAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* *
89989810 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* * *
89989857 TATGGTCTTATACGGAAGCACATATCACA
1 TATGGTCTTACACAGTAGCACATATCACA
89989886 TTTCTCCGAA
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
46 27 0.25
47 56 0.53
48 10 0.09
49 13 0.12
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (47 bp):
TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
Found at i:89992790 original size:50 final size:50
Alignment explanation
Indices: 89992714--89992820 Score: 187
Period size: 50 Copynumber: 2.1 Consensus size: 50
89992704 CATGATCAGG
*
89992714 TGGTAAACCCAAAAATTCCTCAAGAAACACGTTAGTAAACTCATTAACAAC
1 TGGT-AACCCAAAAATTCCTCAAGAAACACATTAGTAAACTCATTAACAAC
*
89992765 TGGTAACCCAAAAATTCCTCAAGAAACACATTAGTAAACTCATTAACATC
1 TGGTAACCCAAAAATTCCTCAAGAAACACATTAGTAAACTCATTAACAAC
89992815 TGGTAA
1 TGGTAA
89992821 TTGTTCTAAC
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
50 50 0.93
51 4 0.07
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.23
Consensus pattern (50 bp):
TGGTAACCCAAAAATTCCTCAAGAAACACATTAGTAAACTCATTAACAAC
Found at i:90002974 original size:22 final size:23
Alignment explanation
Indices: 90002949--90002994 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
90002939 CAACCAAACC
90002949 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
90002971 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
90002994 A
1 A
90002995 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:90003000 original size:23 final size:23
Alignment explanation
Indices: 90002956--90003000 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
90002946 ACCAATTCAA
*
90002956 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
90002979 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
90003001 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:90007715 original size:186 final size:187
Alignment explanation
Indices: 90007374--90007748 Score: 662
Period size: 186 Copynumber: 2.0 Consensus size: 187
90007364 CAAATTGCCT
* *
90007374 AAACACATGCACTCAAAAAAAAAAACTTAGTTACATAAGTCTCATGTATATCAAATAAGCATAGA
1 AAACACATACACTCAAAAAAAAAAACGTAGTTACATAAGTCTCATGTATATCAAATAAGCATAGA
90007439 TGAGCTCATCAGAACACTTAGAATCATTTAAAATATAATTCTATTTATTTCACACTTTCTCTTGT
66 TGAGCTCATCAGAACACTTAGAATCATTTAAAATATAATTCTATTTATTTCACACTTTCTCTTGT
90007504 CGAGAGTTTTATCCGTTGAATTACTAAAATATCGATGGATACTTAAGTAGCACACTC
131 CGAGAGTTTTATCCGTTGAATTACTAAAATATCGATGGATACTTAAGTAGCACACTC
* * * * *
90007561 AAACACATACACTC-AAACAAACAAGGTAGTTACATAAGTCTTATGTATATCAAATAAGTATAGA
1 AAACACATACACTCAAAAAAAAAAACGTAGTTACATAAGTCTCATGTATATCAAATAAGCATAGA
90007625 TGAGCTCATCAGAACACTTAGAATCATTTAAAATATAATTCTATTTATTTCACACTTTCTCTTGT
66 TGAGCTCATCAGAACACTTAGAATCATTTAAAATATAATTCTATTTATTTCACACTTTCTCTTGT
* *
90007690 CGAGAGTTTTATCCGTTGAATTACTAAAATATCGATGGATACTTAAGTTGTACACTC
131 CGAGAGTTTTATCCGTTGAATTACTAAAATATCGATGGATACTTAAGTAGCACACTC
90007747 AA
1 AA
90007749 GGTGTACATA
Statistics
Matches: 179, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
186 166 0.93
187 13 0.07
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (187 bp):
AAACACATACACTCAAAAAAAAAAACGTAGTTACATAAGTCTCATGTATATCAAATAAGCATAGA
TGAGCTCATCAGAACACTTAGAATCATTTAAAATATAATTCTATTTATTTCACACTTTCTCTTGT
CGAGAGTTTTATCCGTTGAATTACTAAAATATCGATGGATACTTAAGTAGCACACTC
Found at i:90021628 original size:16 final size:14
Alignment explanation
Indices: 90021606--90021647 Score: 50
Period size: 16 Copynumber: 2.9 Consensus size: 14
90021596 AATCATTAAG
90021606 ATAAAATAATAAATA
1 ATAAAATAATAAA-A
90021621 ATTAAAATAA-AAAA
1 A-TAAAATAATAAAA
*
90021635 ATAAAAAAATAAA
1 ATAAAATAATAAA
90021648 GAGAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 7 0.29
14 5 0.21
15 4 0.17
16 8 0.33
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
ATAAAATAATAAAA
Found at i:90021635 original size:8 final size:8
Alignment explanation
Indices: 90021624--90021659 Score: 54
Period size: 8 Copynumber: 4.2 Consensus size: 8
90021614 ATAAATAATT
90021624 AAAATAAA
1 AAAATAAA
90021632 AAAATAAA
1 AAAATAAA
90021640 AAAATAAA
1 AAAATAAA
90021648 GAGAAATAAA
1 -A-AAATAAA
90021658 AA
1 AA
90021660 TTGGGTTGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 17 0.65
9 2 0.08
10 7 0.27
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (8 bp):
AAAATAAA
Found at i:90021647 original size:21 final size:21
Alignment explanation
Indices: 90021606--90021647 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
90021596 AATCATTAAG
* * *
90021606 ATAAAATAATAAATAATTAAA
1 ATAAAAAAATAAAAAAATAAA
90021627 ATAAAAAAATAAAAAAATAAA
1 ATAAAAAAATAAAAAAATAAA
90021648 GAGAAATAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (21 bp):
ATAAAAAAATAAAAAAATAAA
Found at i:90025363 original size:10 final size:10
Alignment explanation
Indices: 90025344--90025403 Score: 77
Period size: 10 Copynumber: 6.0 Consensus size: 10
90025334 TTAAATTCTA
90025344 AAAGATAAAT
1 AAAGATAAAT
90025354 ACAA-ATAAAT
1 A-AAGATAAAT
*
90025364 AAAGATAATT
1 AAAGATAAAT
*
90025374 AAAGATAATT
1 AAAGATAAAT
90025384 AAAGATAAAT
1 AAAGATAAAT
*
90025394 AAAAATAAAT
1 AAAGATAAAT
90025404 CCTAAATTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
9 2 0.04
10 41 0.91
11 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:90026857 original size:63 final size:62
Alignment explanation
Indices: 90026732--90026910 Score: 189
Period size: 63 Copynumber: 2.9 Consensus size: 62
90026722 TAACTTATCA
* * * * * * * **
90026732 TTTTGAAATTAGAGCCACACGGACAGA-AGCACGAGCATGTATCCAGGCTGCGTAACTTACTG
1 TTTTGGAATTAGAGTCACACGGCCAGAGA-CACGAGCATGTGTCTAGGCCGTGTAACACACTG
*
90026794 TTTTGGAATTAGAGTCACACAGGCCAGAGACACGAGCATGTGTCTAGACCGTGTAACACACTG
1 TTTTGGAATTAGAGTCACAC-GGCCAGAGACACGAGCATGTGTCTAGGCCGTGTAACACACTG
* * * * *
90026857 TTTTGGAATTAGAGTCACATGGGCTAGGGGCACGAGCATGTGTCTTGGCCGTGT
1 TTTTGGAATTAGAGTCACA-CGGCCAGAGACACGAGCATGTGTCTAGGCCGTGT
90026911 GAGAGGATTT
Statistics
Matches: 98, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
62 18 0.18
63 79 0.81
64 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (62 bp):
TTTTGGAATTAGAGTCACACGGCCAGAGACACGAGCATGTGTCTAGGCCGTGTAACACACTG
Found at i:90030450 original size:3 final size:3
Alignment explanation
Indices: 90030442--90030467 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
90030432 ATATTAAAAT
90030442 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
90030468 AATCAGTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:90033763 original size:38 final size:38
Alignment explanation
Indices: 90033675--90033822 Score: 206
Period size: 38 Copynumber: 3.9 Consensus size: 38
90033665 ATAAAGTATG
* *
90033675 GTTTTAATTAATAATAAAACAAAATAGTATGAGGAAGTA
1 GTTTTAATTAACAATAAAACAAAATAGCATG-GGAAGTA
* *
90033714 GTTTTAATTAACAATAAAACAAAATAGTATGGGAAATA
1 GTTTTAATTAACAATAAAACAAAATAGCATGGGAAGTA
* *
90033752 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGTG
1 GTTTTAATTAACAATAAAACAAAATAGCATGGGAAGTA
* * *
90033790 GTTTTGATTAATAATAAAACAAAGTAGCATGGG
1 GTTTTAATTAACAATAAAACAAAATAGCATGGG
90033823 GGAGTGGAAT
Statistics
Matches: 100, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 70 0.70
39 30 0.30
ACGTcount: A:0.48, C:0.05, G:0.18, T:0.29
Consensus pattern (38 bp):
GTTTTAATTAACAATAAAACAAAATAGCATGGGAAGTA
Found at i:90044285 original size:16 final size:16
Alignment explanation
Indices: 90044264--90044297 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
90044254 CCACTTTGTA
90044264 TTGTTTGCC-ATTAATG
1 TTGTTT-CCTATTAATG
90044280 TTGTTTCCTATTAATG
1 TTGTTTCCTATTAATG
90044296 TT
1 TT
90044298 AACAGATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 15 0.88
ACGTcount: A:0.18, C:0.12, G:0.15, T:0.56
Consensus pattern (16 bp):
TTGTTTCCTATTAATG
Found at i:90051147 original size:2 final size:2
Alignment explanation
Indices: 90051136--90051189 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
90051126 GAGTGCGTGT
*
90051136 GA GA GT GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
90051178 GA GA GA GA GA GA
1 GA GA GA GA GA GA
90051190 AGCTTTTAGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.48, C:0.00, G:0.50, T:0.02
Consensus pattern (2 bp):
GA
Found at i:90053229 original size:18 final size:19
Alignment explanation
Indices: 90053208--90053250 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
90053198 CAAACAAAAA
*
90053208 CAGATACAGACTCAG-TTT
1 CAGATACAGACTCAGATGT
* *
90053226 CAGATTCAGATTCAGATGT
1 CAGATACAGACTCAGATGT
90053245 CAGATA
1 CAGATA
90053251 TGTCAAAATC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (19 bp):
CAGATACAGACTCAGATGT
Found at i:90059136 original size:16 final size:16
Alignment explanation
Indices: 90059115--90059146 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
90059105 ATCTTCAATC
90059115 CTTACAATTTGGTATG
1 CTTACAATTTGGTATG
90059131 CTTACAATTTGGTATG
1 CTTACAATTTGGTATG
90059147 TATTTTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (16 bp):
CTTACAATTTGGTATG
Found at i:90062300 original size:17 final size:17
Alignment explanation
Indices: 90062278--90062313 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
90062268 TCTGTGGATT
90062278 ACCTGACAAAACAGACA
1 ACCTGACAAAACAGACA
90062295 ACCTGACAAAACAGACA
1 ACCTGACAAAACAGACA
90062312 AC
1 AC
90062314 AGATGTGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.31, G:0.11, T:0.06
Consensus pattern (17 bp):
ACCTGACAAAACAGACA
Found at i:90062898 original size:86 final size:86
Alignment explanation
Indices: 90062762--90062922 Score: 277
Period size: 86 Copynumber: 1.9 Consensus size: 86
90062752 GGTTTACCCG
* *
90062762 TGTGGGCCCACACGCCAAGATTTGCCTTTGCCCATGTAACCCACACGGCCTGGTCCAAAAATCTA
1 TGTGGGCCCACACGCCAAGATTGGCCTTTGCCCATGTAACCCACACGGCCTAGTCCAAAAATCTA
90062827 CACGCCCGTGTGACATGCCCA
66 CACGCCCGTGTGACATGCCCA
* * *
90062848 TGTGGGCCCACACGTCAAGATTGGCCTTTGCCCATGTAACTCACATGGCCTAGTCCAAAAATCTA
1 TGTGGGCCCACACGCCAAGATTGGCCTTTGCCCATGTAACCCACACGGCCTAGTCCAAAAATCTA
90062913 CACGCCCGTG
66 CACGCCCGTG
90062923 CGGGCTCACA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 70 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (86 bp):
TGTGGGCCCACACGCCAAGATTGGCCTTTGCCCATGTAACCCACACGGCCTAGTCCAAAAATCTA
CACGCCCGTGTGACATGCCCA
Found at i:90069646 original size:20 final size:20
Alignment explanation
Indices: 90069621--90069662 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
90069611 ATTTGTATTT
90069621 TTCTTTCTAATAGTTTAATG
1 TTCTTTCTAATAGTTTAATG
90069641 TTCTTTCTAATAGTTTAATG
1 TTCTTTCTAATAGTTTAATG
90069661 TT
1 TT
90069663 ATATTTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.57
Consensus pattern (20 bp):
TTCTTTCTAATAGTTTAATG
Found at i:90087041 original size:19 final size:18
Alignment explanation
Indices: 90087002--90087043 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
90086992 TCCATAGTAT
* *
90087002 AAAATAAATAAAATGATA
1 AAAATAAAAAAAATAATA
90087020 AAAATAAAAAATAATAATA
1 AAAATAAAAAA-AATAATA
90087039 AAAAT
1 AAAAT
90087044 GCTAGATGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (18 bp):
AAAATAAAAAAAATAATA
Found at i:90088078 original size:15 final size:15
Alignment explanation
Indices: 90088058--90088086 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
90088048 AGGTAATTTT
90088058 GACCCCCTCTTTTGA
1 GACCCCCTCTTTTGA
90088073 GACCCCCTCTTTTG
1 GACCCCCTCTTTTG
90088087 GTTCGTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.41, G:0.14, T:0.34
Consensus pattern (15 bp):
GACCCCCTCTTTTGA
Found at i:90088910 original size:44 final size:44
Alignment explanation
Indices: 90088772--90089432 Score: 402
Period size: 44 Copynumber: 14.7 Consensus size: 44
90088762 CCATCCGAAC
* * * * *
90088772 CCACTGCAACTTTA-AGGGTATAAGAATTGTCACTTCAATCTACT
1 CCACTGCAACTTCAGAGAG-ATAAGATTTGTAACTTCAATCTGCT
* * *
90088816 CCACTGCAACTTTAGGGAGAT---ATTAGTAACTTCAATCTGCT
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCT
* * * ** *
90088857 CTATTGCAACTTTAGAGAGATAAGATTTGTGGCTTTAATCTGCT
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCT
* * * ** *
90088901 CTACTGCAACATCAGAGAGATAAGATTAGTGGCTTCAAT-TACT
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCT
* * * * *
90088944 CCACTGCAACTTTAGGGAGATAAGATCCGCCATGATAGCTTCAACCTG-T
1 CCACTGCAACTTCAGAGAGATAAGAT-----TTG-TAACTTCAATCTGCT
* * **
90088993 CTCACTGCAACTTCA-AGGGAATAAGATTTGCTATCTTCAATCTATT
1 C-CACTGCAACTTCAGAGAG-ATAAGATTTG-TAACTTCAATCTGCT
* * * ** *
90089039 CCACTGTAACTTTAGGGAGATAAGATTTGTGGCTTCAATTTGCT
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCT
* * * *
90089083 CCACTGCAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTAATCTGTT
1 CCACTGCAACTTCAGAGAGATAAGATTTGT-A-----A-CTTCAATCTGCT
* * * * ** * *
90089134 CCACTGCAAACCTCA-AGGAAATGAGACTTGCTATTTTCAGTTTGCT
1 CCACTGC-AACTTCAGA-GAGATAAGATTTG-TAACTTCAATCTGCT
* * ** * * *
90089180 TCACTGTAACTTCAGAGAGATGTGACTTGTAACTTCAACCTACT
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCT
* * * * * * * * *
90089224 CCACTGAAAATTCAGGGGGATAAGGTTTATAGCTTTAATCTCCT
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCT
* * * *
90089268 CTACTGCAACTTCTGAGAGATAAGTTTTGCTATCTTCAATCTGCT
1 CCACTGCAACTTCAGAGAGATAAGATTTG-TAACTTCAATCTGCT
* * * *
90089313 CCACTACAACTTCAGAGAGATAAGACTTGTAACTTCAACCTACT
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCT
* * *
90089357 CCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCT
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCT
*
90089401 CCACTGCAACTTCAGGGAGATAAGATTTGTAA
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAA
90089433 TTTGTAGCTT
Statistics
Matches: 477, Mismatches: 113, Indels: 54
0.74 0.18 0.08
Matches are distributed among these distances:
41 34 0.07
43 25 0.05
44 247 0.52
45 88 0.18
46 17 0.04
48 1 0.00
49 12 0.03
50 20 0.04
51 16 0.03
52 16 0.03
53 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
CCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCT
Found at i:90088921 original size:85 final size:85
Alignment explanation
Indices: 90088772--90088969 Score: 202
Period size: 85 Copynumber: 2.3 Consensus size: 85
90088762 CCATCCGAAC
* * * * *
90088772 CCACTGCAACTTTA-AGGGTATAAGAATTGTCACTTCAATCTACTCCACTGCAACTTTAGGGAGA
1 CCACTGCAACTTTAGAGAG-ATAAGATTTGTCACTTCAATCTACTCCACTGCAACATCAGAGAGA
*
90088836 T-ATTAGTAACTTCAATCTGCT
65 TAATTAGTAACTTCAAT-TACT
* * ** * * *
90088857 CTATTGCAACTTTAGAGAGATAAGATTTGTGGCTTTAATCTGCTCTACTGCAACATCAGAGAGAT
1 CCACTGCAACTTTAGAGAGATAAGATTTGTCACTTCAATCTACTCCACTGCAACATCAGAGAGAT
**
90088922 AAGATTAGTGGCTTCAATTACT
66 -A-ATTAGTAACTTCAATTACT
*
90088944 CCACTGCAACTTTAGGGAGATAAGAT
1 CCACTGCAACTTTAGAGAGATAAGAT
90088970 CCGCCATGAT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
85 49 0.54
86 3 0.03
87 26 0.29
88 13 0.14
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (85 bp):
CCACTGCAACTTTAGAGAGATAAGATTTGTCACTTCAATCTACTCCACTGCAACATCAGAGAGAT
AATTAGTAACTTCAATTACT
Found at i:90089340 original size:133 final size:133
Alignment explanation
Indices: 90088791--90089429 Score: 389
Period size: 133 Copynumber: 4.7 Consensus size: 133
90088781 CTTTAAGGGT
* * * * * * *
90088791 ATAAGAATTGTCACTTCAATCTACTCCACTGCAACTTTAGGGAGAT---A-TTAGTAACTTCAAT
1 ATAAGACTTGTAACTTCAACCTACTCCACTGAAAATTCAGGGAGATAAGACTTA-TAACTTTAAT
* * * * ** * * * *
90088852 CTGCTCTATTGCAACTTTAGAGAGATAAGATTTG-TGGCTTTAATCTGCTCTACTGCAACATCAG
65 CTCCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTACAACTTCAG
90088916 AGAG
130 AGAG
** * * * * * *
90088920 ATAAGA-TTAGTGGCTTCAA-TTACTCCACTGCAACTTTAGGGAGATAAGATCCGCCATGATAGC
1 ATAAGACTT-GTAACTTCAACCTACTCCACTGAAAATTCAGGGAGATAAGA-----C-TTATAAC
* * * * ** **
90088983 TTCAACCT-GTCTCACTGCAACTTCA-AGGGAATAAGATTTGCTATCTTCAATCTATTCCACTGT
59 TTTAATCTCCTC-CACTGCAACTTCAGAGAG-ATAAGATTTGCTATCTTCAATCTGCTCCACTAC
* *
90089046 AACTTTAGGGAG
122 AACTTCAGAGAG
* ** ** * * * * * *
90089058 ATAAGATTTGTGGCTTCAATTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAATTTGTAGC
1 ATAAGACTTGTAACTTCAACCTACTCCACTGAAAATTCAGGGAGATAAGA-CT-T-A----TAAC
** * * * * * * * * **
90089123 TTTAATCTGTTCCACTGCAAACCTCA-AGGAAATGAGACTTGCTATTTTCAGTTTGCTTCACTGT
59 TTTAATCTCCTCCACTGC-AACTTCAGA-GAGATAAGATTTGCTATCTTCAATCTGCTCCACTAC
90089187 AACTTCAGAGAG
122 AACTTCAGAGAG
** * ** *
90089199 ATGTGACTTGTAACTTCAACCTACTCCACTGAAAATTCAGGGGGATAAGGTTTATAGCTTTAATC
1 ATAAGACTTGTAACTTCAACCTACTCCACTGAAAATTCAGGGAGATAAGACTTATAACTTTAATC
* * *
90089264 TCCTCTACTGCAACTTCTGAGAGATAAGTTTTGCTATCTTCAATCTGCTCCACTACAACTTCAGA
66 TCCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTACAACTTCAGA
90089329 GAG
131 GAG
* * *
90089332 ATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATC
1 ATAAGACTTGTAACTTCAACCTACTCCACTGAAAATTCAGGGAGATAAGACTTATAACTTTAATC
* *
90089397 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG
66 TCCTCCACTGCAACTTCAGAGAGATAAGATTTG
90089430 TAATTTGTAG
Statistics
Matches: 401, Mismatches: 83, Indels: 48
0.75 0.16 0.09
Matches are distributed among these distances:
128 27 0.07
129 14 0.03
131 1 0.00
133 127 0.32
134 21 0.05
136 6 0.01
137 30 0.07
138 43 0.11
139 32 0.08
140 18 0.04
141 81 0.20
142 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (133 bp):
ATAAGACTTGTAACTTCAACCTACTCCACTGAAAATTCAGGGAGATAAGACTTATAACTTTAATC
TCCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTACAACTTCAGA
GAG
Found at i:90093906 original size:25 final size:26
Alignment explanation
Indices: 90093876--90093925 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
90093866 ATCTGTGTGG
90093876 TATGAGTATGA-ATAAATGAAAAGAT
1 TATGAGTATGAGATAAATGAAAAGAT
* *
90093901 TATGAGTATGAGTTAAATGGAAAGA
1 TATGAGTATGAGATAAATGAAAAGA
90093926 ACAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28
Consensus pattern (26 bp):
TATGAGTATGAGATAAATGAAAAGAT
Found at i:90096637 original size:16 final size:16
Alignment explanation
Indices: 90096613--90096646 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
90096603 GAAAATATCT
90096613 TTTAGTTTTTATCATA
1 TTTAGTTTTTATCATA
*
90096629 TTTATTTTTTATCATA
1 TTTAGTTTTTATCATA
90096645 TT
1 TT
90096647 AATAATTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTAGTTTTTATCATA
Found at i:90096866 original size:22 final size:24
Alignment explanation
Indices: 90096836--90096884 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 24
90096826 AAAAATTCTG
* *
90096836 AATTATTTTGATTTTTA-TAA-GT
1 AATTATTTTCATATTTATTAAGGT
*
90096858 AATTTTTTTCATATTTATTAAGGT
1 AATTATTTTCATATTTATTAAGGT
90096882 AAT
1 AAT
90096885 AAAATAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 14 0.64
23 3 0.14
24 5 0.23
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (24 bp):
AATTATTTTCATATTTATTAAGGT
Found at i:90098218 original size:13 final size:13
Alignment explanation
Indices: 90098200--90098228 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
90098190 CAATGTTTTA
90098200 AAAGATGCATTAT
1 AAAGATGCATTAT
90098213 AAAGATGCATTAT
1 AAAGATGCATTAT
90098226 AAA
1 AAA
90098229 AACATTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (13 bp):
AAAGATGCATTAT
Found at i:90101532 original size:42 final size:43
Alignment explanation
Indices: 90101451--90101540 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 43
90101441 TCCTATACGA
* * * *
90101451 GGTCTTACATGTAATCAAATATCGATGGCACTATCCCAGACAG
1 GGTCTTACACGAAATCAAATATCGATGCCAATATCCCAGACAG
* * *
90101494 GGTCTTACACGAAATCATATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGCCAATATCCCAGACAG
90101536 GGTCT
1 GGTCT
90101541 CTTACATGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 22 0.55
43 18 0.45
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCAATATCCCAGACAG
Found at i:90102728 original size:17 final size:17
Alignment explanation
Indices: 90102708--90102742 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
90102698 CCCGTGTGTG
90102708 ACACACGGGCAGGCCAC
1 ACACACGGGCAGGCCAC
90102725 ACACACGGGCAGGCCAC
1 ACACACGGGCAGGCCAC
90102742 A
1 A
90102743 GGCCCGTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.40, G:0.29, T:0.00
Consensus pattern (17 bp):
ACACACGGGCAGGCCAC
Found at i:90106658 original size:16 final size:15
Alignment explanation
Indices: 90106632--90106680 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 15
90106622 TGATGTGAAT
90106632 AATATAAAATATTAA
1 AATATAAAATATTAA
*
90106647 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
90106663 AATAATAATAATAATTAA
1 AAT-ATAA-AAT-ATTAA
90106681 TATTGACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 5 0.18
16 14 0.50
17 5 0.18
18 4 0.14
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:90106841 original size:20 final size:20
Alignment explanation
Indices: 90106784--90106843 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
90106774 AATACTACAT
90106784 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
90106803 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
90106826 AAATATGTACATAATATA
1 AAATATGTACATAATATA
90106844 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:90106933 original size:15 final size:14
Alignment explanation
Indices: 90106902--90106966 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
90106892 CATGTAAAAA
90106902 AAATATATATATAT
1 AAATATATATATAT
90106916 AAATA-ATATAGTATT
1 AAATATATATA-TA-T
* *
90106931 AAAGATATATACAT
1 AAATATATATATAT
90106945 AAA-ATAGTATA-AT
1 AAATATA-TATATAT
*
90106958 ATATATATA
1 AAATATATA
90106967 CGTAATATAG
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
13 14 0.33
14 18 0.42
15 6 0.14
16 5 0.12
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (14 bp):
AAATATATATATAT
Found at i:90106938 original size:25 final size:25
Alignment explanation
Indices: 90106910--90107041 Score: 100
Period size: 25 Copynumber: 5.6 Consensus size: 25
90106900 AAAAATATAT
*
90106910 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
90106935 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAGTATTAA-AG
* * *
90106960 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
90106984 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
90107006 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAGTATTAAAG
*
90107029 AAATATA-ATAATA
1 ATATATACATAATA
90107042 ACAAAAAAAG
Statistics
Matches: 86, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
21 1 0.01
22 15 0.17
23 24 0.28
24 11 0.13
25 34 0.40
26 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:90107546 original size:18 final size:18
Alignment explanation
Indices: 90107523--90107576 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
90107513 ACAAGTGGTG
90107523 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
90107541 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
90107553 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
90107571 GTGGAG
1 GTGGAG
90107577 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:90107559 original size:30 final size:30
Alignment explanation
Indices: 90107518--90107616 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
90107508 TAGGTACAAG
90107518 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
90107548 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
90107578 TGGTGGTGGAGCAAGTGTGACTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
90107608 TGGTGGTGG
1 TGGTGGTGG
90107617 CAAAGGCTAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:90108518 original size:89 final size:91
Alignment explanation
Indices: 90108296--90108816 Score: 374
Period size: 89 Copynumber: 5.8 Consensus size: 91
90108286 ACTAGACATT
* * * ** * * *
90108296 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGC-AAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
**
90108360 TTGATTTTT--A-AAACA-AAATTTG
66 TTGATTTTTGGACAAACATAAATTAA
* * ** ** * *
90108382 TAAAACAGATTTTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
90108447 TTGATTTTTGGA-AAGCATAAATT-A
66 TTGATTTTTGGACAAACATAAATTAA
** *
90108471 AAAAAAATCAATTGAAAATACCTCGGCGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
90108536 TTGATTTTTTTGACAAACATAAATTGAAAA
66 TTGA-TTTTTGGACAAACATAAATT---AA
** *
90108566 AAAAAAAGAAATTGAAAATACCTTAGCGTGT--CCTGAGGCTGAACTCACCTCTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * **
90108629 TTGATTTTTTTTGAAAAACA-GAATTTG
66 TTGA--TTTTTGGACAAACATAAATTAA
* * * * * * * * *
90108656 AAAAACAGAATTTGAAAATACCTCAGTGTGTGA-GTCAAGACTCAACTTACCACTCGCAATATGA
1 AAAAAAAGAAATTGAAAATACCTCGGCGTGTGACCT-GAGGCTCAACTCACCTCTCGCAATATGA
* * * *
90108720 GCTGATTTTTTTGA-AACACAGAAATT-G
65 GTTGA-TTTTTGGACAA-ACATAAATTAA
* * * * * * *
90108747 AAGAATAGAAATGGAAAACACCTCAGC--GT--CTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
90108808 CTGATTTTT
66 TTGATTTTT
90108817 TTGAAAGACA
Statistics
Matches: 359, Mismatches: 59, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
86 32 0.09
87 63 0.18
88 1 0.00
89 65 0.18
90 41 0.11
91 45 0.13
92 31 0.09
93 39 0.11
94 14 0.04
95 28 0.08
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (91 bp):
AAAAAAAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGGACAAACATAAATTAA
Found at i:90108617 original size:93 final size:90
Alignment explanation
Indices: 90108259--90108837 Score: 485
Period size: 87 Copynumber: 6.5 Consensus size: 90
90108249 TTAACTCATT
* * * * *
90108259 TCTCGCAATATGAATTGA-CTTTTT-AAAACTAGACATT--AAAAACAGAAATTGAAAATAGCTC
1 TCTCGCAATATGAGTTGATTTTTTTGAAAAC-AGAAATTGAAAAAAAAGAAATTGAAAATACCTC
* * *
90108320 AGCACGTGAG-C-AAGGCTCAACTCACT
65 AG--CGTGTGCCTGAGGCTCAACTCACC
* * **
90108346 TCTCGCAATATGAGTTGA--TTTTT-AAAACA-AAATTTG-TAAAACAGATTTTGAAAATACCTC
1 TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAA-TTGAAAAAAAAGAAATTGAAAATACCTC
* ** *
90108406 GGTATGTGACCCGAGGCTCAACTCACC
65 AGCGTGTG-CCTGAGGCTCAACTCACC
* * * * ** *
90108433 TCTCGTAATATGAGTTGA-TTTTTGGAAAGCATAAATT-AAAAAAAATCAATTGAAAATACCTCG
1 TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAAAAAGAAATTGAAAATACCTCA
*
90108496 GCGTGTGACCTGAGGCTTAACTCACC
66 GCGTGTG-CCTGAGGCTCAACTCACC
*
90108522 TCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAAAGAAATTGAAAATAC
1 TCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTG---AAAAAAAAGAAATTGAAAATAC
* *
90108587 CTTAGCGTGT-CCTGAGGCTGAACTCACC
62 CTCAGCGTGTGCCTGAGGCTCAACTCACC
* * *
90108615 TCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAATTTG-AAAAACAGAATTTGAAAATACCT
1 TCTCGCAATATGAGTTGA-TTTTTTTG-AAAACAGAAATTGAAAAAAAAGAAATTGAAAATACCT
* ** * * *
90108679 CAGTGTGTGAGTCAAGACTCAACTTACC
64 CAGCGTGTGCCT-GAGGCTCAACTCACC
* * * * * *
90108707 ACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTG-AAGAATAGAAATGGAAAACACCTC
1 TCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAAAAAAGAAATTGAAAATACCTC
* *
90108771 AGC--GT-CTTGAGGTTCAACTCACC
65 AGCGTGTGCCTGAGGCTCAACTCACC
*
90108794 TCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 TCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAA
90108838 TATCTCAACG
Statistics
Matches: 408, Mismatches: 63, Indels: 41
0.80 0.12 0.08
Matches are distributed among these distances:
84 5 0.01
85 3 0.01
86 32 0.08
87 96 0.24
88 7 0.02
89 67 0.16
90 40 0.10
91 49 0.12
92 27 0.07
93 35 0.09
94 18 0.04
95 29 0.07
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (90 bp):
TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAAAAAGAAATTGAAAATACCTCA
GCGTGTGCCTGAGGCTCAACTCACC
Found at i:90108657 original size:14 final size:14
Alignment explanation
Indices: 90108638--90108673 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
90108628 GTTGATTTTT
90108638 TTTGAAAAACAGAA
1 TTTGAAAAACAGAA
90108652 TTTGAAAAACAGAA
1 TTTGAAAAACAGAA
90108666 TTTGAAAA
1 TTTGAAAA
90108674 TACCTCAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.56, C:0.06, G:0.14, T:0.25
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:90108728 original size:185 final size:178
Alignment explanation
Indices: 90108418--90108837 Score: 463
Period size: 185 Copynumber: 2.3 Consensus size: 178
90108408 TATGTGACCC
* * * * *
90108418 GAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGGAAAGCATAAATTAAAAAAAATCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAAATCA
* * * * * *
90108481 ATTGAAAATACCTCGGCGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTT
66 ATTGAAAATACCTCAGCGTGTGACCTAAGACTCAACTCACCACTCGCAATATGAGCTGATTTTTT
* * * *
90108546 TGACAA-ACATAAATTGAAAAAAAAAAAGAAATTGAAAATACCTTAGCGTGTCCT
131 TGA-AACACAGAAATTG----AAAAAAAGAAATGGAAAACACCTCAGC--GTCCT
* * * *
90108600 GAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAATTTGAAAAACA-G
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAACAGAAATTGAAAAAAATC
* * *
90108664 AATTTGAAAATACCTCAGTGTGTGA-GTCAAGACTCAACTTACCACTCGCAATATGAGCTGATTT
65 AA-TTGAAAATACCTCAGCGTGTGACCT-AAGACTCAACTCACCACTCGCAATATGAGCTGATTT
* * *
90108728 TTTTGAAACACAGAAATTGAAGAATAGAAATGGAAAACACCTCAGCGTCTT
128 TTTTGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCCT
* * *
90108779 GAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA
90108838 TATCTCAACG
Statistics
Matches: 202, Mismatches: 30, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
178 24 0.12
179 34 0.17
181 22 0.11
182 31 0.15
184 5 0.02
185 86 0.43
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (178 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAAATCA
ATTGAAAATACCTCAGCGTGTGACCTAAGACTCAACTCACCACTCGCAATATGAGCTGATTTTTT
TGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCCT
Found at i:90108728 original size:274 final size:267
Alignment explanation
Indices: 90108332--90108837 Score: 624
Period size: 274 Copynumber: 1.9 Consensus size: 267
90108322 CACGTGAGCA
* * *
90108332 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAATTTGTAAAACAGATTTTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAAAATTTGAAAAACAGAATTTGA
* * * * * *
90108397 AAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGGAAA
66 AAATACCTCAGTATGTGACCCAAGACTCAACTCACCACTCGCAATATGAGCTGATTTTTTGGAAA
* * ** * * *
90108461 -GCATAAATTAAAAAAAATCAATTGAAAATACCTCGGCGTGTGACCTGAGGCTT-AACTCACCTC
131 CACAGAAATTAAAAAAAAGAAATGGAAAACACCTCAGC--GT--CCTGAGG-TTCAACTCACCTC
* *
90108524 TCGCAATATGAGTTGATTTTTTTGACAA-ACATAAATTGAAAAAAAAAAAGAAATTGAAAATACC
191 TCGCAATATGAGCTGATTTTTTTGA-AAGACAGAAATTGAAAAAAAAAAAGAAATTGAAAATACC
90108588 TTAGCGTGTCCTG
255 TTAGCGTGTCCTG
* *
90108601 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAATTTGAAAAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT--AAAACAAAATTTGAAAAACAGAA
* ** *
90108666 TTTGAAAATACCTCAGTGTGTGAGTCAAGACTCAACTTACCACTCGCAATATGAGCTGATTTTTT
61 TTTGAAAATACCTCAGTATGTGACCCAAGACTCAACTCACCACTCGCAATATGAGCTGATTTTTT
* * * * *
90108731 TGAAACACAGAAATTGAAGAATAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTC
126 GGAAACACAGAAATTAAAAAAAAGAAATGGAAAACACCTCAGCGTCCTGAGGTTCAACTCACCTC
90108796 TCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
191 TCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
90108838 TATCTCAACG
Statistics
Matches: 199, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
269 30 0.15
271 4 0.02
272 58 0.29
274 71 0.36
275 9 0.05
276 27 0.14
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (267 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAAAATTTGAAAAACAGAATTTGA
AAATACCTCAGTATGTGACCCAAGACTCAACTCACCACTCGCAATATGAGCTGATTTTTTGGAAA
CACAGAAATTAAAAAAAAGAAATGGAAAACACCTCAGCGTCCTGAGGTTCAACTCACCTCTCGCA
ATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAAAAAAAAAGAAATTGAAAATACCTTAGCG
TGTCCTG
Found at i:90108869 original size:75 final size:74
Alignment explanation
Indices: 90108744--90109453 Score: 523
Period size: 73 Copynumber: 9.3 Consensus size: 74
90108734 AACACAGAAA
* * * * *
90108744 TTGAAGAATAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
90108807 GCTGATTTTT
65 GCTGATTTTT
* *
90108817 TTGAAAGACAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACGCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
90108882 GTTGA--TTT
65 GCTGATTTTT
* * * *
90108890 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
90108953 GCTGATTTTT
65 GCTGATTTTT
90108963 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
90109028 G-TTA-ATTT
65 GCTGATTTTT
* * * * *
90109036 TTGACAAACA-AAACTTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTATCGCAATATG
1 TTGA-AAACAGAAA-TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
90109100 AGTTGATTTTT
64 AGCTGATTTTT
* ** * * *
90109111 TTGAAAAACAGAAATTAAAAATAGAAATAGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTC
1 TTG-AAAACAGAAATTGAAAAT--ACCT------CA--AC-GTGTCTTGAGGCTCAACTCACCTC
90109176 TCGCAATATGAGCTGATTTTT
54 TCGCAATATGAGCTGATTTTT
* * ** * * * * *
90109197 TTG-AAACAG-AATTAAAAACAGAATTTGAAAG-GACCTCGACGTGTAGCCCGAGACTCAACTCA
1 TTGAAAACAGAAATT-GAAA-A-TACCTCAACGTG-TCTTGA---G--GCTC-A-ACTC-----A
* * *
90109259 CCTCTCACAATATGAGTTGATTCTT
50 CCTCTCGCAATATGAGCTGATTTTT
**
90109284 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
90109349 GTTGATTTTT
65 GCTGATTTTT
* * * * * * *
90109359 TTGATAAAAATAGAATTTGAAAATATCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATAT
1 TTG---AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
*
90109424 GAGTTGA--TTT
63 GAGCTGATTTTT
90109434 TTGAAAAACAGAAA-TGAAAA
1 TTG-AAAACAGAAATTGAAAA
90109454 GCAGAAATTG
Statistics
Matches: 516, Mismatches: 72, Indels: 99
0.75 0.10 0.14
Matches are distributed among these distances:
71 36 0.07
72 13 0.03
73 136 0.26
74 11 0.02
75 125 0.24
76 4 0.01
77 57 0.11
78 6 0.01
80 6 0.01
81 2 0.00
82 7 0.01
83 6 0.01
84 13 0.03
85 2 0.00
86 42 0.08
87 35 0.07
88 5 0.01
89 6 0.01
90 4 0.01
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTT
Found at i:90109030 original size:146 final size:150
Alignment explanation
Indices: 90108766--90109453 Score: 707
Period size: 146 Copynumber: 4.5 Consensus size: 150
90108756 AATGGAAAAC
* * * *
90108766 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAA
1 ACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAA
* *
90108831 TTGAAAATATCTCAACGTGTCTTGAGGCTCAACGCACCTCTCGCAATATGAGTTGA-TTTTTGAC
66 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAC
90108895 AAACAA-A-AA-TTGAAATT
131 AAACAACAGAATTTGAAATT
* * * *
90108912 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAA
1 ACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAA
*
90108977 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAC
66 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAC
*
90109041 AAAC-A-A-AACTTGAAATT
131 AAACAACAGAATTTGAAATT
* *
90109058 ACCTCAGCGTGTCCTGAGGCTCAACTCATCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGA
1 ACCTCAGC--GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGA
* ** * * *
90109123 AATTAAAAATAGAAATAGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
64 AATTGAAAAT--ACCT------CA--AC-GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * **
90109188 CTGATTTTTTTGAAACAGAATTAAAAACAGAATTTGAAAGG
118 TTGA-TTTTTTG--AC---A--AACAACAGAATTTGAAATT
* * * * * *
90109229 ACCTCGACGTGTAGCCCGAGACTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCA
1 ACCTC-A-GCGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACA
**
90109294 GAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
62 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
* * *
90109359 TTGATAAA-AATAGAATTTGAAAAT
126 TTGACAAACAACAGAATTTGAAATT
* *
90109383 ATCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGA
1 ACCTCAGCGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGA
90109446 AA-TGAAAA
64 AATTGAAAA
90109454 GCAGAAATTG
Statistics
Matches: 460, Mismatches: 51, Indels: 59
0.81 0.09 0.10
Matches are distributed among these distances:
145 5 0.01
146 145 0.32
148 58 0.13
149 6 0.01
150 17 0.04
152 35 0.08
153 1 0.00
154 17 0.04
155 2 0.00
156 2 0.00
157 1 0.00
158 1 0.00
159 35 0.08
160 2 0.00
161 6 0.01
162 43 0.09
163 3 0.01
165 2 0.00
166 1 0.00
168 2 0.00
169 1 0.00
170 1 0.00
171 17 0.04
172 1 0.00
173 56 0.12
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (150 bp):
ACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAA
TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAC
AAACAACAGAATTTGAAATT
Found at i:90109379 original size:77 final size:76
Alignment explanation
Indices: 90109209--90109446 Score: 297
Period size: 77 Copynumber: 3.1 Consensus size: 76
90109199 GAAACAGAAT
** * * *
90109209 TAAAAACAGAATTTGAAAGGACCTCGACGTGTAGCCCGAGACTCAACTCACCTCTCACAATATGA
1 TAAAAACAGAATTTGAAAATACCTCAACGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGA
*
90109274 GTTGATTCTTTTG
64 GTTGATTTTTTTG
* *
90109287 -AAAAGCAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TAAAAACAGAATTTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
90109351 TGATTTTTTTG
66 TGATTTTTTTG
* * * *
90109362 ATAAAAATAGAATTTGAAAATATCTCAGCGTG-CCCTAAGGCTCAACTCACCTCTCGCAATATGA
1 -TAAAAACAGAATTTGAAAATACCTCAACGTGTCCC-GAGGCTCAACTCACCTCTCGCAATATGA
90109426 GTTGA--TTTTTG
64 GTTGATTTTTTTG
90109437 -AAAAACAGAA
1 TAAAAACAGAA
90109447 ATGAAAAGCA
Statistics
Matches: 142, Mismatches: 15, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
73 9 0.06
75 47 0.33
76 3 0.02
77 83 0.58
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (76 bp):
TAAAAACAGAATTTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTG
Found at i:90109467 original size:14 final size:14
Alignment explanation
Indices: 90109434--90109480 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 14
90109424 GAGTTGATTT
90109434 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
90109448 -TGAAAAGCAGAAA
1 TTGAAAAACAGAAA
*
90109461 TTGAAAAATAGAAA
1 TTGAAAAACAGAAA
90109475 TT-AAAA
1 TTGAAAA
90109481 TTACCTCGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 16 0.55
14 13 0.45
ACGTcount: A:0.64, C:0.04, G:0.15, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:90109577 original size:250 final size:251
Alignment explanation
Indices: 90109243--90109704 Score: 682
Period size: 250 Copynumber: 1.8 Consensus size: 251
90109233 CGACGTGTAG
90109243 CCCGAGACTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAC
1 CCCGAGACTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAC
*
90109308 CTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAA-AATAG
66 CTCAACGTGTCCCGAGGCTCAACTCAACTCTCGCAATATGAGTTGA-TTTTTTGA-AAAGAATA-
* * *
90109372 AATTTGAAAATATCTCAGC-GTGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
128 AA-TTGAAAATACCTCAGCGGTGACCTAAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
90109435 TGAAAAACAGAAATGAAAAGCAGAAATTGAAAAATAGAAATTAAAATTACCTCGGCGTGC
192 TGAAAAACAGAAATAAAAAGCAGAAATTGAAAAATAGAAATTAAAATTACCTCGGCGTGC
* * * * *
90109495 CCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA-T-TTTTGAAAAGCATAAATTGAAATTAC
1 CCCGAGACTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAC
* * *
90109558 CTCAGCGTGTCCTGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTTGAAAAGCATAAAT
66 CTCAACGTGTCCCGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTTGAAAAGAATAAAT
* * *
90109623 TGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACTTCTCGTAATATGAGTTGATTTTTTTG
131 TGAAAATACCTCAGCG-GTGACCTAAGGCCCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG
*
90109688 AAAGACAGAAATAAAAA
194 AAAAACAGAAATAAAAA
90109705 CATCAAAATA
Statistics
Matches: 188, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
247 15 0.08
248 5 0.03
249 46 0.24
250 67 0.36
251 22 0.12
252 33 0.18
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (251 bp):
CCCGAGACTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAC
CTCAACGTGTCCCGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTTGAAAAGAATAAAT
TGAAAATACCTCAGCGGTGACCTAAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
AAACAGAAATAAAAAGCAGAAATTGAAAAATAGAAATTAAAATTACCTCGGCGTGC
Found at i:90109639 original size:74 final size:74
Alignment explanation
Indices: 90109472--90109690 Score: 300
Period size: 73 Copynumber: 2.9 Consensus size: 74
90109462 TGAAAAATAG
* * * * *
90109472 AAATT-AAAATTACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA-TTTT
1 AAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTT
90109535 TGAAAAGCAT
65 TGAAAAGCAT
*
90109545 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTT
90109610 GAAAAGCAT
66 GAAAAGCAT
* *
90109619 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTC-ACTTCTCGTAATATGAGTTGATTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCAAC-TCTCGCAATATGAGTTGA-TT
90109683 TTTTGAAA
62 TTTTGAAA
90109691 GACAGAAATA
Statistics
Matches: 131, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
73 49 0.37
74 39 0.30
75 2 0.02
76 31 0.24
77 10 0.08
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTT
GAAAAGCAT
Found at i:90114482 original size:14 final size:13
Alignment explanation
Indices: 90114460--90114504 Score: 63
Period size: 14 Copynumber: 3.3 Consensus size: 13
90114450 CGCCAAGGTA
90114460 TTTTTAATTTCTT
1 TTTTTAATTTCTT
90114473 TTTTTCAATTTCTT
1 TTTTT-AATTTCTT
*
90114487 CTTTTAATTTCTGT
1 TTTTTAATTTCT-T
90114501 TTTT
1 TTTT
90114505 CAAAAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 12 0.43
14 16 0.57
ACGTcount: A:0.13, C:0.11, G:0.02, T:0.73
Consensus pattern (13 bp):
TTTTTAATTTCTT
Found at i:90114504 original size:13 final size:12
Alignment explanation
Indices: 90114460--90114504 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 12
90114450 CGCCAAGGTA
90114460 TTTTTAATTTCTT
1 TTTTTAATTTC-T
90114473 TTTTTCAATTTCT
1 TTTTT-AATTTCT
90114486 TCTTTTAATTTCT
1 T-TTTTAATTTCT
90114499 GTTTTT
1 -TTTTT
90114505 CAAAAATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 18 0.62
14 11 0.38
ACGTcount: A:0.13, C:0.11, G:0.02, T:0.73
Consensus pattern (12 bp):
TTTTTAATTTCT
Found at i:90114569 original size:100 final size:97
Alignment explanation
Indices: 90114385--90114757 Score: 374
Period size: 100 Copynumber: 3.9 Consensus size: 97
90114375 TCAATTTCCG
* * * *
90114385 TTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCA
1 TTTTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
90114450 CGCCAAGGTATTTTTAATTTCTTTTTTTCAATT
66 CGCTAAGGTATTTTCAATTTC-TTTTTTCAATT
* * * *
90114483 TCTTCTTTTAATTTCTGTTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG
1 T-TT-TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
90114548 CACGCTGAGGTATTTTCAATTTCTATTTTTCAATT
64 CACGCTAAGGTATTTTCAATTTCT-TTTTTCAATT
** ** *
90114583 TTTGCCTTACAAACTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTT---TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* *
90114646 ACACGTTAAGGTATTTTCAA------TTTT---TG
63 ACACGCTAAGGTATTTTCAATTTCTTTTTTCAATT
* * *
90114672 TTTTTTTAATTTATG-TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAAGGA
1 TTTTTTTAATTTATGCTTT-T-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* *
90114736 CACGCTGAGGTAATTTCAATTT
64 CACGCTAAGGTATTTTCAATTT
90114758 TTGTTTGTCA
Statistics
Matches: 233, Mismatches: 30, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
85 3 0.01
86 8 0.03
89 58 0.25
92 4 0.02
98 1 0.00
99 60 0.26
100 85 0.36
101 14 0.06
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (97 bp):
TTTTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTAAGGTATTTTCAATTTCTTTTTTCAATT
Found at i:90114783 original size:73 final size:73
Alignment explanation
Indices: 90114694--90115275 Score: 739
Period size: 73 Copynumber: 7.9 Consensus size: 73
90114684 ATGTTTCTAA
* * *
90114694 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AAGGACACGCTGAGGTAATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-GACACGTTGAGGTATTTTCAATTT
*
90114758 TTGTTTGTC
65 CTGTTTGTC
* **
90114767 AAAACTCAACTCATATTGTAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
*
90114832 TGTTTTTC
66 TGTTTGTC
* * * *
90114840 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
*
90114905 TTTGTTTGTC
64 TCTGTTTGTC
90114915 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
*
90114980 TGTCTT-TAAA
66 TGT-TTGT--C
* * *
90114990 AATAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTTAATTT
1 AA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
*
90115055 CTGTTTTTC
65 CTGTTTGTC
* * * *
90115064 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
*
90115127 TTTGTTTGTC
64 TCTGTTTGTC
90115137 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
90115201 TGTCTT-TC
66 TGT-TTGTC
* * * * *
90115209 AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCCAT
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
90115272 TTCT
63 TTCT
90115276 ATTCTTCAAT
Statistics
Matches: 448, Mismatches: 44, Indels: 33
0.85 0.08 0.06
Matches are distributed among these distances:
70 38 0.08
72 24 0.05
73 153 0.34
74 24 0.05
75 105 0.23
76 104 0.23
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:90114870 original size:148 final size:147
Alignment explanation
Indices: 90114674--90115284 Score: 770
Period size: 148 Copynumber: 4.1 Consensus size: 147
90114664 AATTTTTGTT
* * * *
90114674 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AAGGAC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-GAC
* * ** *
90114737 ACGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAACTCAACTCATATTGTAAGAGGTGAGTTGAG
65 ACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
*
90114801 CCTCAAGACACGTTGAGGTA
130 CCTCAAG--ACGCTGAGGTA
* *
90114821 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* *
90114886 CGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
*
90114950 CTCAAGACACGTTGAGGTA
131 CTCAAG--ACGCTGAGGTA
* * * *
90114969 TTTTCAATTTCTGTCTTTAAAAATAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
1 TTTTCAATTTCTGTTTTTCAAAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
* * * * *
90115034 ACGTTGAGGTATTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGA
65 ACGCTGAGGTAATTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
90115099 ACCTCAAGACGCTGAGGTA
129 ACCTCAAGACGCTGAGGTA
* * *
90115118 ATTTCAATTTTTGTTTGTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * *
90115180 CGTTGAGGTATTTTCAATTTCTGTCTT-TCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTG
66 CGCTGAGGTAATTTCAATTTCTGT-TTGTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
90115244 AACCTCAAGACGCTGAGGTG
128 AACCTCAAGACGCTGAGGTA
* * *
90115264 TTTTCCATTTCTATTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
90115285 TTTCTGTGTT
Statistics
Matches: 415, Mismatches: 40, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
145 65 0.16
146 67 0.16
147 15 0.04
148 142 0.34
149 87 0.21
151 39 0.09
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (147 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
CTCAAGACGCTGAGGTA
Found at i:90115150 original size:221 final size:222
Alignment explanation
Indices: 90114694--90115284 Score: 919
Period size: 221 Copynumber: 2.7 Consensus size: 222
90114684 ATGTTTCTAA
* * *
90114694 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AAGGACACGCTGAGGTAATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-GACACGTTGAGGTATTTTCAATTT
* * * * ** *
90114758 TTGT-TTGT--CAAAACTCAACTCATATTGTAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT
65 CTGTCTT-TAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGT
*
90114820 ATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGAC
129 ATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-GAC
90114885 ACGCTGAGGTAATTTCAATTTTTGTTTGTC
193 ACGCTGAGGTAATTTCAATTTTTGTTTGTC
90114915 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
90114980 TGTCTTTAAAAATAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
66 TGTCTTTAAAAA-AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
* *
90115045 TTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-AGAC
130 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAGACAC
90115109 GCTGAGGTAATTTCAATTTTTGTTTGTC
195 GCTGAGGTAATTTCAATTTTTGTTTGTC
90115137 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* *
90115201 TGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTG
66 TGTCTTT-AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
* * *
90115264 TTTTCCATTTCTATTCTTCAA
130 TTTTCAATTTCTGTTTTTCAA
90115285 TTTCTGTGTT
Statistics
Matches: 345, Mismatches: 19, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
219 26 0.08
221 172 0.50
222 40 0.12
223 2 0.01
224 105 0.30
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (222 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAGACACG
CTGAGGTAATTTCAATTTTTGTTTGTC
Done.