Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 276 of 311
Found at i:90845314 original size:23 final size:23
Alignment explanation
Indices: 90845288--90845354 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
90845278 ATATTTCTAC
90845288 TATTATTATATTTCTATTTATTA
1 TATTATTATATTTCTATTTATTA
90845311 TATT-TT-TATTTCTATTTATATA
1 TATTATTATATTTCTATTTAT-TA
*
90845333 CTAATATTAT-TTTC-A-TTATTA
1 -TATTATTATATTTCTATTTATTA
90845354 T
1 T
90845355 TTTTCTTACA
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 8 0.21
23 8 0.21
24 6 0.15
25 1 0.03
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (23 bp):
TATTATTATATTTCTATTTATTA
Found at i:90845490 original size:25 final size:25
Alignment explanation
Indices: 90845462--90845510 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
90845452 CTCATTTCAA
*
90845462 ATTTTTATACATTATTTACTTTAAT
1 ATTTTTATACATTATGTACTTTAAT
* *
90845487 ATTTTTATATATTATGTATTTTAA
1 ATTTTTATACATTATGTACTTTAA
90845511 ACTTTTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (25 bp):
ATTTTTATACATTATGTACTTTAAT
Found at i:90845516 original size:25 final size:24
Alignment explanation
Indices: 90845401--90845577 Score: 85
Period size: 24 Copynumber: 7.2 Consensus size: 24
90845391 TTCTATTTAT
* * *
90845401 TTATTTATTTTACATTTTT-TGTTA
1 TTATGTATTTTAAATTTTTAT-ATA
* **
90845425 TTATCTATTTTAGCTTTTTATATA
1 TTATGTATTTTAAATTTTTATATA
* *
90845449 --ATGCTCATTTCAAATTTTTATACA
1 TTATG-T-ATTTTAAATTTTTATATA
* *
90845473 TTATTTACTTTAATATTTTTATATA
1 TTATGTATTTTAA-ATTTTTATATA
* *
90845498 TTATGTATTTTAAACTTTTTTTCACGCA
1 TTATGTATTTTAAA-TTTTTAT-A--TA
* *
90845526 TTATATATTTTGAATTGTTTATATA
1 TTATGTATTTTAAATT-TTTATATA
* *
90845551 TTAT-T-TTTAAAGAGTTTTATATA
1 TTATGTATTTTAA-ATTTTTATATA
90845574 TTAT
1 TTAT
90845578 TTTATCTTAA
Statistics
Matches: 117, Mismatches: 24, Indels: 25
0.70 0.14 0.15
Matches are distributed among these distances:
22 2 0.02
23 17 0.15
24 41 0.35
25 34 0.29
26 3 0.03
27 3 0.03
28 17 0.15
ACGTcount: A:0.29, C:0.07, G:0.05, T:0.59
Consensus pattern (24 bp):
TTATGTATTTTAAATTTTTATATA
Found at i:90849702 original size:125 final size:125
Alignment explanation
Indices: 90849480--90849708 Score: 273
Period size: 125 Copynumber: 1.8 Consensus size: 125
90849470 CGATAGCTTT
* * * * *
90849480 TTAAAATGAGGAAATATTTTGTGTTTGGAAATTCGAGAAATCGTGCCCTACCGTGTTGGGTTTCG
1 TTAAAATGAGGAAATATTTTGCGTTTGAAAATTCGAGAAATCGTGACCTACCGTGCTGAGTTTCG
* ** * ** *
90849545 ATTTTTCGTTCAACCGAATAACTGAATATCCTTTTGAAACTTCGTCCATGTTTTTTTAAA
66 ACTTACCGTTCAACCAAATAACCAAATATCCTTCTGAAACTTCGTCCATGTTTTTTTAAA
* * *
90849605 TTAAAATGAGGCAATATTTTGCGTTTGAAAATTCGAGAAATCGT-ACCTAATCGTGCTGAGTTTT
1 TTAAAATGAGGAAATATTTTGCGTTTGAAAATTCGAGAAATCGTGACCT-ACCGTGCTGAGTTTC
* *
90849669 GACTTACCGCTT-GACCAAATAGCCAAATATCCTTCTGAAA
65 GACTTACCG-TTCAACCAAATAACCAAATATCCTTCTGAAA
90849709 TTTCAAATGC
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
124 3 0.04
125 80 0.94
126 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (125 bp):
TTAAAATGAGGAAATATTTTGCGTTTGAAAATTCGAGAAATCGTGACCTACCGTGCTGAGTTTCG
ACTTACCGTTCAACCAAATAACCAAATATCCTTCTGAAACTTCGTCCATGTTTTTTTAAA
Found at i:90850509 original size:11 final size:10
Alignment explanation
Indices: 90850460--90850565 Score: 50
Period size: 9 Copynumber: 11.0 Consensus size: 10
90850450 TTAATTAGCT
90850460 TAAAA-ATTA
1 TAAAATATTA
90850469 TAAAAGTATTA
1 TAAAA-TATTA
*
90850480 TAAAAAATT-
1 TAAAATATTA
90850489 TAGAAA-ATTA
1 TA-AAATATTA
90850499 TAAAACTA-T-
1 TAAAA-TATTA
*
90850508 T-ACATATTA
1 TAAAATATTA
*
90850517 TCAAAATAGTA
1 T-AAAATATTA
*
90850528 GAAAAT-TT-
1 TAAAATATTA
*
90850536 TAATATATATA
1 TAAAATAT-TA
*
90850547 TAAAGTA-TA
1 TAAAATATTA
90850556 TAAAATATTA
1 TAAAATATTA
90850566 AATTTTATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 27
0.65 0.10 0.25
Matches are distributed among these distances:
7 2 0.03
8 7 0.10
9 25 0.35
10 17 0.24
11 21 0.29
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.36
Consensus pattern (10 bp):
TAAAATATTA
Found at i:90850649 original size:20 final size:20
Alignment explanation
Indices: 90850625--90850662 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
90850615 TCTATAATTT
*
90850625 TTTTTTAT-ATTTTTATAAC
1 TTTTTTATAATTATTATAAC
90850644 TTTTTTATAATTATTATAA
1 TTTTTTATAATTATTATAA
90850663 TATTACAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTTTATAATTATTATAAC
Found at i:90852103 original size:41 final size:42
Alignment explanation
Indices: 90852043--90852161 Score: 165
Period size: 40 Copynumber: 2.9 Consensus size: 42
90852033 TGTAAAACAA
*
90852043 AGAGCAATAGCAGCG-TTTTTGGTAAAACGTCGCTAAAAAC-
1 AGAGCAATAGCAGCGCTTTTTGGTAAAACGCCGCTAAAAACT
* *
90852083 AGAGCACTAGCAGCGCTTTTT-GTAAAACGCCGCTAAAGACT
1 AGAGCAATAGCAGCGCTTTTTGGTAAAACGCCGCTAAAAACT
* *
90852124 AGAGCATTAGCGGCGC-TTTTGGTAAAACGCCGCTAAAA
1 AGAGCAATAGCAGCGCTTTTTGGTAAAACGCCGCTAAAA
90852162 GTCATATAAC
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
40 35 0.50
41 35 0.50
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.22
Consensus pattern (42 bp):
AGAGCAATAGCAGCGCTTTTTGGTAAAACGCCGCTAAAAACT
Found at i:90852351 original size:14 final size:14
Alignment explanation
Indices: 90852334--90852396 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
90852324 GTTAAAGGTT
90852334 TATGGTTTAAGATA
1 TATGGTTTAAGATA
* *
90852348 TATGGGTTTAAGGTT
1 TAT-GGTTTAAGATA
*
90852363 TATGAG-TT-A-A-C
1 TATG-GTTTAAGATA
90852374 TATGGTTTAAGATA
1 TATGGTTTAAGATA
90852388 TATGGTTTA
1 TATGGTTTA
90852397 GGGTTTAAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
10 1 0.03
11 6 0.16
12 1 0.03
13 2 0.05
14 15 0.39
15 13 0.34
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (14 bp):
TATGGTTTAAGATA
Found at i:90853180 original size:17 final size:18
Alignment explanation
Indices: 90853148--90853182 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
90853138 CTTAACAAAT
*
90853148 TTAATAGCTACCATTTAA
1 TTAATAGCTACAATTTAA
90853166 TTAATA-CTACAATTTAA
1 TTAATAGCTACAATTTAA
90853183 AAATTTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (18 bp):
TTAATAGCTACAATTTAA
Found at i:90853516 original size:68 final size:68
Alignment explanation
Indices: 90853410--90853536 Score: 184
Period size: 68 Copynumber: 1.9 Consensus size: 68
90853400 TTAAGTAAAA
*
90853410 TTTAATTGGAGATTTAAGGGATAAGAAACGCCGCAAAAAACAAAATAATTTAACGTAAACGGTAT
1 TTTAATTGGAGATTTAAGGGATAAGAAACGCCGAAAAAAACAAAATAATTTAACGTAAACGGTAT
90853475 CAT
66 CAT
* * * * *
90853478 TTTAGTTGGAGATTT-AGGAGATTAGAAACGCCGAAAAAAACATAATTATTTAACTTAAA
1 TTTAATTGGAGATTTAAGG-GATAAGAAACGCCGAAAAAAACAAAATAATTTAACGTAAA
90853537 TGGCATCTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
67 3 0.06
68 49 0.94
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.28
Consensus pattern (68 bp):
TTTAATTGGAGATTTAAGGGATAAGAAACGCCGAAAAAAACAAAATAATTTAACGTAAACGGTAT
CAT
Found at i:90857136 original size:168 final size:168
Alignment explanation
Indices: 90856858--90857192 Score: 643
Period size: 168 Copynumber: 2.0 Consensus size: 168
90856848 TTTGATTGTG
90856858 GTATGATCTTCTGCTATATGCTCTTTTATCGTTTAAACTTAAATGAAAATTTGCAAACTGTCTGA
1 GTATGATCTTCTGCTATATGCTCTTTTATCGTTTAAACTTAAATGAAAATTTGCAAACTGTCTGA
90856923 TTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCAATA
66 TTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCAATA
*
90856988 AAAAAGCTGAAATCAGGGAACGAGATTGGTGCAATGTA
131 AAAAAGATGAAATCAGGGAACGAGATTGGTGCAATGTA
*
90857026 GTATGATCTTCTGCTATATGCTCTTTTATCGTTTAAACTTAAATGAAAATTTGCAGACTGTCTGA
1 GTATGATCTTCTGCTATATGCTCTTTTATCGTTTAAACTTAAATGAAAATTTGCAAACTGTCTGA
*
90857091 TTTTGTATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCAATA
66 TTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCAATA
90857156 AAAAAGATGAAATCAGGGAACGAGATTGGTGCAATGT
131 AAAAAGATGAAATCAGGGAACGAGATTGGTGCAATGT
90857193 GGTTACATGC
Statistics
Matches: 164, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
168 164 1.00
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (168 bp):
GTATGATCTTCTGCTATATGCTCTTTTATCGTTTAAACTTAAATGAAAATTTGCAAACTGTCTGA
TTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCAATA
AAAAAGATGAAATCAGGGAACGAGATTGGTGCAATGTA
Found at i:90858498 original size:43 final size:43
Alignment explanation
Indices: 90858411--90858616 Score: 181
Period size: 43 Copynumber: 4.9 Consensus size: 43
90858401 CGTTAATGGG
* *
90858411 AAAAGCGCCGCTAAAGGT--TTGTTTTGTAGCGGCGTTTGTAAA
1 AAAAGCGTCGCTAAAGGTCATGGTTTT-TAGCGGCGTTTGTAAA
* *
90858453 AAAAGTGTCGCTAAAGGTCATGGTTTTTAGCGGCATTTGTGAAA
1 AAAAGCGTCGCTAAAGGTCATGGTTTTTAGCGGCGTTTGT-AAA
** * * * ***
90858497 AAAA-TATCGTTAAAGGTTATGATTTTTA---GCGTTTGTGGG
1 AAAAGCGTCGCTAAAGGTCATGGTTTTTAGCGGCGTTTGTAAA
* * *
90858536 AAAAGCGTTGCTAAAGGTCATGGTCTTTAGCCGCGTTTGTAAA
1 AAAAGCGTCGCTAAAGGTCATGGTTTTTAGCGGCGTTTGTAAA
* * * *
90858579 AAAAGCGCCGCTAAAGGTTATGGTCTTTAGCGACGTTT
1 AAAAGCGTCGCTAAAGGTCATGGTTTTTAGCGGCGTTT
90858617 TTTTAAATAA
Statistics
Matches: 130, Mismatches: 27, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
39 4 0.03
40 24 0.18
42 16 0.12
43 73 0.56
44 13 0.10
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.33
Consensus pattern (43 bp):
AAAAGCGTCGCTAAAGGTCATGGTTTTTAGCGGCGTTTGTAAA
Found at i:90858594 original size:83 final size:83
Alignment explanation
Indices: 90858411--90858610 Score: 208
Period size: 83 Copynumber: 2.4 Consensus size: 83
90858401 CGTTAATGGG
*
90858411 AAAAGCGCCGCTAAAGGTT-TGTTTTGTAGCGGCGTTTGTAAAAAAAGTGTCGCTAAAGGTCATG
1 AAAAGCGCCGCTAAAGGTTATGTTTT-TA---GCGTTTGTAAAAAAAGCGTCGCTAAAGGTCATG
* *
90858475 GTTTTTAGCGGCATTTGTGAAA
62 GTCTTTAGCCGCATTTGTGAAA
*** * *** *
90858497 AAAA-TATCGTTAAAGGTTATGATTTTTAGCGTTTGTGGGAAAAGCGTTGCTAAAGGTCATGGTC
1 AAAAGCGCCGCTAAAGGTTATG-TTTTTAGCGTTTGTAAAAAAAGCGTCGCTAAAGGTCATGGTC
*
90858561 TTTAGCCGCGTTTGT-AAA
65 TTTAGCCGCATTTGTGAAA
*
90858579 AAAAGCGCCGCTAAAGGTTATGGTCTTTAGCG
1 AAAAGCGCCGCTAAAGGTTAT-GTTTTTAGCG
90858611 ACGTTTTTTT
Statistics
Matches: 93, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
82 7 0.08
83 63 0.68
84 1 0.01
85 10 0.11
86 8 0.09
87 4 0.04
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (83 bp):
AAAAGCGCCGCTAAAGGTTATGTTTTTAGCGTTTGTAAAAAAAGCGTCGCTAAAGGTCATGGTCT
TTAGCCGCATTTGTGAAA
Found at i:90861438 original size:37 final size:38
Alignment explanation
Indices: 90861383--90861464 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 38
90861373 ATAATATATT
*
90861383 TTATCATAACACTCATCACTTGTTGACTGACTGTCTTTA
1 TTAT-ATAACACTCATCACTTATTGACTGACTGTCTTTA
* *
90861422 TTATATAATACT-ATCACTTATTGACTGGCTGTCTTTA
1 TTATATAACACTCATCACTTATTGACTGACTGTCTTTA
90861459 TTATAT
1 TTATAT
90861465 TTAACTGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 29 0.73
38 7 0.17
39 4 0.10
ACGTcount: A:0.27, C:0.18, G:0.10, T:0.45
Consensus pattern (38 bp):
TTATATAACACTCATCACTTATTGACTGACTGTCTTTA
Found at i:90862908 original size:35 final size:35
Alignment explanation
Indices: 90862789--90862919 Score: 136
Period size: 35 Copynumber: 3.6 Consensus size: 35
90862779 CCTCATTGAA
* * ***
90862789 ATACCATACCTACATTTTACAACTCGGTATGGGCA
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
* **
90862824 ATGCCATACCTACATTTCTTAACTCAGTATGGATTTG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--TG
*
90862861 ATAATACCATACCTACATATCACAACTCAGTATGGATG
1 ---ATACCATACCTACATTTCACAACTCAGTATGGATG
90862899 ATACCATACCTACATTTCACA
1 ATACCATACCTACATTTCACA
90862920 CTTTGCCATG
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
35 47 0.60
38 2 0.03
40 29 0.37
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:90865898 original size:40 final size:39
Alignment explanation
Indices: 90865854--90866033 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 39
90865844 CCAACCCAAT
* * * *
90865854 TGCCTTCGGGATTTAGCCCGAATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGAA-ATAACAACCAGCACGAA
* *
90865894 TGCCTTCGGGACTTAACCCGGAAATAGCGACCAGCACGAA
1 TGCCTTCGGGACTTAACCC-GAAATAACAACCAGCACGAA
*
90865934 TGCCTTCGGGGCTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCC-GAAATAACAACCAGCACGAA
* *
90865974 TGCCTTCGGGACTTAACTCGGAAATAGCAACCAGCACGAA
1 TGCCTTCGGGACTTAAC-CCGAAATAACAACCAGCACGAA
90866014 TGCCTTCGGGACTTAACCCG
1 TGCCTTCGGGACTTAACCCG
90866034 GATATAATCC
Statistics
Matches: 125, Mismatches: 13, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
39 2 0.02
40 119 0.95
41 4 0.03
ACGTcount: A:0.30, C:0.29, G:0.23, T:0.18
Consensus pattern (39 bp):
TGCCTTCGGGACTTAACCCGAAATAACAACCAGCACGAA
Found at i:90865987 original size:80 final size:80
Alignment explanation
Indices: 90865854--90866040 Score: 286
Period size: 80 Copynumber: 2.3 Consensus size: 80
90865844 CCAACCCAAT
* * *
90865854 TGCCTTCGGGATTTAGCCC-GAATGTAACAACCAGCACAAATGCCTTCGGGACTTAACCCGGAAA
1 TGCCTTCGGGACTTAACCCGGAA-ATAACAACCAGCACAAATGCCTTCGGGACTTAACCCGGAAA
*
90865918 TAGCGACCAGCACGAA
65 TAGCAACCAGCACGAA
* * *
90865934 TGCCTTCGGGGCTTAACCCGGAAATAACAACCAGCACGAATGCCTTCGGGACTTAACTCGGAAAT
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACAAATGCCTTCGGGACTTAACCCGGAAAT
90865999 AGCAACCAGCACGAA
66 AGCAACCAGCACGAA
*
90866014 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
90866041 TCCTCAATTG
Statistics
Matches: 97, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 94 0.97
81 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.18
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACAAATGCCTTCGGGACTTAACCCGGAAAT
AGCAACCAGCACGAA
Found at i:90870869 original size:23 final size:22
Alignment explanation
Indices: 90870821--90870871 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
90870811 AATTTTGTCT
* **
90870821 TTTTTATTTTCTGTTTTCCTTA
1 TTTTTATTTTCAGTTTTCAATA
*
90870843 TTTTTATTTTCAGTTTTCAAATC
1 TTTTTATTTTCAGTTTTC-AATA
90870866 TTTTTA
1 TTTTTA
90870872 AAACAGAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.16, C:0.12, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTTTATTTTCAGTTTTCAATA
Found at i:90871854 original size:3 final size:3
Alignment explanation
Indices: 90871846--90871949 Score: 115
Period size: 3 Copynumber: 34.7 Consensus size: 3
90871836 AAAGTTTAGG
90871846 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * *
90871894 TT- TTG TTA TTA TTA TTA TCA CTA TCGTA TTA CTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T--TA TTA TTA TTA TTA TTA TTA
90871940 -TA TTA TTA TT
1 TTA TTA TTA TT
90871950 TTCCTTTTTT
Statistics
Matches: 88, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
2 5 0.06
3 79 0.90
4 1 0.01
5 3 0.03
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:90872966 original size:253 final size:253
Alignment explanation
Indices: 90872513--90872981 Score: 679
Period size: 253 Copynumber: 1.9 Consensus size: 253
90872503 AAAAAGATTC
* * * *
90872513 TTTAAACAAGGCAATATCTCTTGTTTGGAAATTGGAGAAAATTGTGCCCTACGTGTTGGGTTTCG
1 TTTAAACAAGGCAATATCTCGTGTTTGGAAATTCGAGAAAATTGTGCCCTAAGTGTTGGGCTTCG
* * *
90872578 ATTTATCATTTGGCCAAACAACCGAATATCCTTTTTAAAATTTCAACGCATAAGTTTTGAAAATC
66 ATTTATCATTTGACCAAACAACCGAATATCATTTTTAAAATTTCAACGCATAAATTTTGAAAATC
* * * *
90872643 ATGAGATGATTTTGGTATCGAAGGTTTGAAATATCATGTCCTACGTGCAGGATGTGGTATTTTAT
131 ATGAGACGATTTTGATATCGAAGGTTTGAAATATCATGTCCTACGTGCAGGATATGATATTTTAT
90872708 TTCTTCAAAATAAGAGAATCTTAATCGTTTCATACTATTGCATTTTTATTCAAGACTT
196 TTCTTCAAAATAAGAGAATCTTAATCGTTTCATACTATTGCATTTTTATTCAAGACTT
* *
90872766 TTTAGACAAGGCAATATTTCGTGTTTGGAAATTTCGAG-AAATTGTGCCCTAAGTGTTGGGCTTC
1 TTTAAACAAGGCAATATCTCGTGTTTGGAAA-TTCGAGAAAATTGTGCCCTAAGTGTTGGGCTTC
* * * ** * **
90872830 GATTTATCGTTTGACCGAACGACCGAATATCATTTTTAATTTTTCAATGCATAAATTTTGGGAAT
65 GATTTATCATTTGACCAAACAACCGAATATCATTTTTAAAATTTCAACGCATAAATTTTGAAAAT
* * ** *
90872895 TATGAGACGATTTTGATATCGAAGGTTTGAAATGTTGTGTCCTACGTGCTGGATATGATATTTTA
130 CATGAGACGATTTTGATATCGAAGGTTTGAAATATCATGTCCTACGTGCAGGATATGATATTTTA
*
90872960 TTTCTTCGAAATAAGAGAATCT
195 TTTCTTCAAAATAAGAGAATCT
90872982 CAATATTCAC
Statistics
Matches: 188, Mismatches: 27, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
253 183 0.97
254 5 0.03
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.38
Consensus pattern (253 bp):
TTTAAACAAGGCAATATCTCGTGTTTGGAAATTCGAGAAAATTGTGCCCTAAGTGTTGGGCTTCG
ATTTATCATTTGACCAAACAACCGAATATCATTTTTAAAATTTCAACGCATAAATTTTGAAAATC
ATGAGACGATTTTGATATCGAAGGTTTGAAATATCATGTCCTACGTGCAGGATATGATATTTTAT
TTCTTCAAAATAAGAGAATCTTAATCGTTTCATACTATTGCATTTTTATTCAAGACTT
Found at i:90874358 original size:14 final size:14
Alignment explanation
Indices: 90874339--90874369 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
90874329 AGTCATCTCG
90874339 AAACATAATTTTAT
1 AAACATAATTTTAT
90874353 AAACATAATTTTAT
1 AAACATAATTTTAT
90874367 AAA
1 AAA
90874370 TATTAACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AAACATAATTTTAT
Found at i:90878346 original size:14 final size:14
Alignment explanation
Indices: 90878327--90878353 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
90878317 TTGTTTACTT
90878327 GTAAAAGCTTTTCC
1 GTAAAAGCTTTTCC
90878341 GTAAAAGCTTTTC
1 GTAAAAGCTTTTC
90878354 AGGATGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (14 bp):
GTAAAAGCTTTTCC
Found at i:90880638 original size:3 final size:3
Alignment explanation
Indices: 90880619--90881042 Score: 136
Period size: 3 Copynumber: 142.7 Consensus size: 3
90880609 TGGTTTAATG
* * *
90880619 TTA TTA -TA TTTA CTA TTA TTA TT- TTA CTA TTA TTA -TA TAA TATA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * * * *
90880663 TTT TTA TTA TCA TAA TTT TTA TTA TT- TTA CTA TTA TAA CTTAA CGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TT-A -TTA
* * * **
90880710 TTA TTA TTA CTA TTA TTT TTA TTT TTA TTA CCA TTA TTA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * **
90880757 CTT- GTA TT- TATA TTTA TT- TTA TT- CTA ATA CCA TTA TTA TTA TTA
1 -TTA TTA TTA T-TA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
90880801 CTT- CTA TTA TT- TT- TTA TT- TCTAA CTA TTA TTA TTCA -TA TATA
1 -TTA TTA TTA TTA TTA TTA TTA T-T-A TTA TTA TTA TT-A TTA T-TA
* * *
90880843 TATA TTA TTA TT- TGTA TTA TTG TTA TTA TTA CTA TTA TTA ATA -TA
1 T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
90880888 CTTA TTA TTG CTA TTA TTA TTT TTA CTA TTA TTA TTA TT- TTA TT-
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
90880932 TTT TTA CTT- TTA TTA TTA TTA ATA TTA TTA TTA TCA -TC TTA TT-
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * * *
90880975 TTA TTG CTA TTA TCA TTG TTG TAA TTA CTA TTA CTA GTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
90881022 TTT TTAA CTA TTA TTA TTA TT
1 TTA TT-A TTA TTA TTA TTA TT
90881043 GGTAGTAGTA
Statistics
Matches: 305, Mismatches: 79, Indels: 74
0.67 0.17 0.16
Matches are distributed among these distances:
2 35 0.11
3 240 0.79
4 26 0.09
5 4 0.01
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:90880646 original size:14 final size:15
Alignment explanation
Indices: 90880619--90880656 Score: 69
Period size: 14 Copynumber: 2.6 Consensus size: 15
90880609 TGGTTTAATG
90880619 TTATTATATTTACTA
1 TTATTATATTTACTA
90880634 TTATTAT-TTTACTA
1 TTATTATATTTACTA
90880648 TTATTATAT
1 TTATTATAT
90880657 AATATATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (15 bp):
TTATTATATTTACTA
Found at i:90880700 original size:23 final size:22
Alignment explanation
Indices: 90880632--90880700 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 22
90880622 TTATATTTAC
*
90880632 TATTATTATTTTACTATTATTA
1 TATTATTATTTTACTATTATAA
* * *
90880654 TATAATATATTTTTATTATCATAA
1 TATTAT-TA-TTTTACTATTATAA
*
90880678 TTTTTATTATTTTACTATTATAA
1 -TATTATTATTTTACTATTATAA
90880701 CTTAACGTAT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
22 5 0.14
23 14 0.39
24 13 0.36
25 4 0.11
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (22 bp):
TATTATTATTTTACTATTATAA
Found at i:90880717 original size:47 final size:47
Alignment explanation
Indices: 90880634--90880746 Score: 122
Period size: 47 Copynumber: 2.4 Consensus size: 47
90880624 ATATTTACTA
* * *
90880634 TTATTATTTTACTATTATTATATAATATATTTTTATTA-TCATAATTT
1 TTATTATTTTACTATTATAATATAACATATTATTATTACT-ATAATTT
* *
90880681 TTATTATTTTACTATTATAACT-TAACGTATTATTATTACTATTATTT
1 TTATTATTTTACTATTATAA-TATAACATATTATTATTACTATAATTT
* *
90880728 TTATTTTTATTACCATTAT
1 TTATTATT-TTACTATTAT
90880747 TATTATTATA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
47 45 0.80
48 11 0.20
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.60
Consensus pattern (47 bp):
TTATTATTTTACTATTATAATATAACATATTATTATTACTATAATTT
Found at i:90880962 original size:43 final size:43
Alignment explanation
Indices: 90880857--90881042 Score: 139
Period size: 43 Copynumber: 4.3 Consensus size: 43
90880847 TTATTATTTG
* * * * * *
90880857 TATTATTGTTATTATTACTATTATTAATATACTTA--TTATTGC
1 TATTATTATTATTAATACTATTATTATTAT-TTTATTTTTTTAC
90880899 TATTATTATT-TT--TACTATTATTATTATTTTATTTTTTTAC
1 TATTATTATTATTAATACTATTATTATTATTTTATTTTTTTAC
* * * * * *
90880939 TTTTATTATTATTAATATTATTATTATCATCTTATTTTATTGC
1 TATTATTATTATTAATACTATTATTATTATTTTATTTTTTTAC
* * * *
90880982 TATTATCATTGTTGTAATTACTATTACTAGTATTATTATTTTTTTAAC
1 TATTATTATT-AT-TAA-TACTATTATTATTATT-TTATTTTTTT-AC
90881030 TATTATTATTATT
1 TATTATTATTATT
90881043 GGTAGTAGTA
Statistics
Matches: 111, Mismatches: 23, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
38 3 0.03
39 14 0.13
40 14 0.13
41 4 0.04
42 9 0.08
43 31 0.28
44 1 0.01
45 3 0.03
46 12 0.11
47 10 0.09
48 10 0.09
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.62
Consensus pattern (43 bp):
TATTATTATTATTAATACTATTATTATTATTTTATTTTTTTAC
Found at i:90881303 original size:18 final size:18
Alignment explanation
Indices: 90881280--90881363 Score: 81
Period size: 18 Copynumber: 4.8 Consensus size: 18
90881270 AATTTCTCTT
90881280 ATTATTAATATTATTCTC
1 ATTATTAATATTATTCTC
* *
90881298 ATTATTAACA-CATT-T-
1 ATTATTAATATTATTCTC
90881313 -TT-TTAAT-TTATTTGCTC
1 ATTATTAATATTA-TT-CTC
90881330 ATTATTAATATTATTCTC
1 ATTATTAATATTATTCTC
90881348 ATTATTAATATCTATT
1 ATTATTAATAT-TATT
90881364 TGCTCATTCG
Statistics
Matches: 53, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
13 5 0.09
14 4 0.08
16 2 0.04
17 3 0.06
18 25 0.47
19 11 0.21
20 3 0.06
ACGTcount: A:0.32, C:0.11, G:0.01, T:0.56
Consensus pattern (18 bp):
ATTATTAATATTATTCTC
Found at i:90882776 original size:21 final size:21
Alignment explanation
Indices: 90882746--90882787 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
90882736 GTTGATCCTG
*
90882746 AACTTTTTGCAAGAGAGACAA
1 AACTTCTTGCAAGAGAGACAA
90882767 AACTTCTTGCAAGAGAGACAA
1 AACTTCTTGCAAGAGAGACAA
90882788 TTTATATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (21 bp):
AACTTCTTGCAAGAGAGACAA
Found at i:90884339 original size:18 final size:18
Alignment explanation
Indices: 90884318--90884360 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
90884308 ATAATTTAAA
90884318 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
90884336 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
90884354 ATGTAAA
1 ATATAAA
90884361 AACAGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:90886345 original size:37 final size:37
Alignment explanation
Indices: 90886295--90886368 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
90886285 TGATTAAAAG
90886295 AAAATTTATGTCCATATGCAACGATTTCAGCTATCTT
1 AAAATTTATGTCCATATGCAACGATTTCAGCTATCTT
90886332 AAAATTTATGTCCATATGCAACGATTTCAGCTATCTT
1 AAAATTTATGTCCATATGCAACGATTTCAGCTATCTT
90886369 CTTCCTTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (37 bp):
AAAATTTATGTCCATATGCAACGATTTCAGCTATCTT
Found at i:90898816 original size:21 final size:21
Alignment explanation
Indices: 90898787--90898827 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
90898777 ATGCCATTAA
* *
90898787 GGTTTAAACAAAAAAGGAAAT
1 GGTTCAAACAAAAAACGAAAT
*
90898808 GGTTCAAACGAAAAACGAAA
1 GGTTCAAACAAAAAACGAAA
90898828 ATGGGTGTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.10, G:0.20, T:0.15
Consensus pattern (21 bp):
GGTTCAAACAAAAAACGAAAT
Found at i:90898829 original size:22 final size:21
Alignment explanation
Indices: 90898787--90898831 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
90898777 ATGCCATTAA
* *
90898787 GGTTTAAACAAAAAAGGAAAT
1 GGTTCAAACAAAAAAGAAAAT
*
90898808 GGTTCAAACGAAAAACGAAAAT
1 GGTTCAAAC-AAAAAAGAAAAT
90898830 GG
1 GG
90898832 GTGTTCGATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.53, C:0.09, G:0.22, T:0.16
Consensus pattern (21 bp):
GGTTCAAACAAAAAAGAAAAT
Found at i:90903954 original size:11 final size:11
Alignment explanation
Indices: 90903934--90903987 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
90903924 TTAGAATATA
*
90903934 CCCATTCCTTG
1 CCCATACCTTG
90903945 CCCATACCTTG
1 CCCATACCTTG
*
90903956 CCCATACCTTT
1 CCCATACCTTG
*
90903967 CCCATACC-TA
1 CCCATACCTTG
90903977 CCCATACCTTG
1 CCCATACCTTG
90903988 AAAAGGTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:90904551 original size:18 final size:18
Alignment explanation
Indices: 90904528--90904598 Score: 99
Period size: 18 Copynumber: 3.9 Consensus size: 18
90904518 TTTACGGCAT
90904528 TATTTACGTATACAGTAC
1 TATTTACGTATACAGTAC
*
90904546 TATTTATGTATAC-GATAC
1 TATTTACGTATACAG-TAC
90904564 TATTTACGTATACAGTAC
1 TATTTACGTATACAGTAC
* *
90904582 TGTTCACGTATACAGTA
1 TATTTACGTATACAGTA
90904599 GTTGGGATTG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
17 1 0.02
18 45 0.96
19 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.39
Consensus pattern (18 bp):
TATTTACGTATACAGTAC
Found at i:90908615 original size:11 final size:11
Alignment explanation
Indices: 90908601--90908643 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
90908591 CCATTCATTA
90908601 CCCATACCTTG
1 CCCATACCTTG
*
90908612 CCCATACCTTT
1 CCCATACCTTG
*
90908623 CCCATACC-TA
1 CCCATACCTTG
90908633 CCCATACCTTG
1 CCCATACCTTG
90908644 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:90908615 original size:22 final size:22
Alignment explanation
Indices: 90908590--90908639 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
90908580 TTAGAATATA
*
90908590 CCCATTCATTACCCATACCTTG
1 CCCATACATTACCCATACCTTG
* * *
90908612 CCCATACCTTTCCCATACC-TA
1 CCCATACATTACCCATACCTTG
90908633 CCCATAC
1 CCCATAC
90908640 CTTGGAAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.24, C:0.46, G:0.02, T:0.28
Consensus pattern (22 bp):
CCCATACATTACCCATACCTTG
Found at i:90908638 original size:21 final size:22
Alignment explanation
Indices: 90908601--90908642 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
90908591 CCATTCATTA
*
90908601 CCCATACCTTGCCCATACCTTT
1 CCCATACCTTACCCATACCTTT
90908623 CCCATACC-TACCCATACCTT
1 CCCATACCTTACCCATACCTT
90908643 GGAAAGGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (22 bp):
CCCATACCTTACCCATACCTTT
Found at i:90909202 original size:18 final size:18
Alignment explanation
Indices: 90909179--90909247 Score: 77
Period size: 18 Copynumber: 3.8 Consensus size: 18
90909169 CATTTACGGT
*
90909179 ACTATTCACGTATATGAC
1 ACTATTCACGTATACGAC
*
90909197 ACTATTCACGTTTACGAC
1 ACTATTCACGTATACGAC
* *
90909215 ACTATTTACGTATAC-AGT
1 ACTATTCACGTATACGA-C
*
90909233 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
90909248 AGTAGCTGGG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
17 1 0.02
18 42 0.98
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (18 bp):
ACTATTCACGTATACGAC
Found at i:90910893 original size:11 final size:11
Alignment explanation
Indices: 90910873--90910915 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
90910863 TTAGAATATA
*
90910873 CCCATTCCTTG
1 CCCATACCTTG
*
90910884 CCCATACCTTT
1 CCCATACCTTG
*
90910895 CCCATACC-TA
1 CCCATACCTTG
90910905 CCCATACCTTG
1 CCCATACCTTG
90910916 GAAAGGTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.19, C:0.47, G:0.05, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:90911525 original size:18 final size:18
Alignment explanation
Indices: 90911455--90911527 Score: 94
Period size: 18 Copynumber: 4.1 Consensus size: 18
90911445 CATTTATAGC
* **
90911455 ACTATTCACATATACAAC
1 ACTATTCACGTATACAGT
90911473 ACTATTCACGTATAC-GAT
1 ACTATTCACGTATACAG-T
*
90911491 ACTATTTACGTATACAGT
1 ACTATTCACGTATACAGT
90911509 ACTATTCACGTATACAGT
1 ACTATTCACGTATACAGT
90911527 A
1 A
90911528 GTTGGGATTG
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
18 47 0.98
19 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (18 bp):
ACTATTCACGTATACAGT
Found at i:90917149 original size:18 final size:18
Alignment explanation
Indices: 90917126--90917161 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
90917116 ACGTGAATAC
90917126 TGTATACATAAATAGTGT
1 TGTATACATAAATAGTGT
* *
90917144 TGTATACGTGAATAGTGT
1 TGTATACATAAATAGTGT
90917162 CATAAATGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (18 bp):
TGTATACATAAATAGTGT
Found at i:90919629 original size:22 final size:21
Alignment explanation
Indices: 90919590--90919651 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 21
90919580 TTTTTATAAA
* **
90919590 TTTTAATTTTAATTTTTATAT
1 TTTTATTTTTAAGATTTATAT
*
90919611 TTTTATTTTTAAGAATTTAATTT
1 TTTTATTTTTAAG-ATTT-ATAT
90919634 TTTTATTTTTAAGATTTA
1 TTTTATTTTTAAGATTTA
90919652 AAAAATTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
21 12 0.34
22 7 0.20
23 16 0.46
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (21 bp):
TTTTATTTTTAAGATTTATAT
Found at i:90919652 original size:22 final size:23
Alignment explanation
Indices: 90919610--90919652 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
90919600 AATTTTTATA
90919610 TTTTTATTTTTAAGAATTTAATT
1 TTTTTATTTTTAAGAATTTAATT
90919633 TTTTTATTTTTAAG-ATTTAA
1 TTTTTATTTTTAAGAATTTAA
90919653 AAAATTCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (23 bp):
TTTTTATTTTTAAGAATTTAATT
Found at i:90929884 original size:25 final size:25
Alignment explanation
Indices: 90929855--90929902 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
90929845 TTATAATATG
* * *
90929855 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
90929880 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
90929903 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:90929953 original size:9 final size:9
Alignment explanation
Indices: 90929941--90930017 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
90929931 TTTGATAAAC
90929941 ATGATATGT
1 ATGATATGT
*
90929950 ATGATATGCAC
1 ATGATATG--T
90929961 ATGATATGT
1 ATGATATGT
*
90929970 ATGATATGCAG
1 ATGATATG--T
*
90929981 ATGACATGT
1 ATGATATGT
*
90929990 ATGATATGCAC
1 ATGATATG--T
90930001 ATGATATGT
1 ATGATATGT
90930010 ATGATATG
1 ATGATATG
90930018 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:90929966 original size:11 final size:11
Alignment explanation
Indices: 90929950--90930021 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
90929940 CATGATATGT
90929950 ATGATATGCAC
1 ATGATATGCAC
*
90929961 ATGATATG--T
1 ATGATATGCAC
*
90929970 ATGATATGCAG
1 ATGATATGCAC
* *
90929981 ATGACATG--T
1 ATGATATGCAC
90929990 ATGATATGCAC
1 ATGATATGCAC
*
90930001 ATGATATG--T
1 ATGATATGCAC
90930010 ATGATATGCAC
1 ATGATATGCAC
90930021 A
1 A
90930022 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:90930029 original size:20 final size:20
Alignment explanation
Indices: 90929939--90930021 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
90929929 ATTTTGATAA
90929939 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
90929959 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
90929979 AGATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
90929999 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
90930019 ACA
1 ACA
90930022 CGAGATGTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:90930101 original size:24 final size:24
Alignment explanation
Indices: 90930074--90930216 Score: 229
Period size: 24 Copynumber: 6.0 Consensus size: 24
90930064 GAGGAAGTGC
90930074 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90930098 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90930122 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90930146 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90930169 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
90930193 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
90930217 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 1, Indels: 9
0.92 0.01 0.07
Matches are distributed among these distances:
23 29 0.26
24 67 0.59
25 17 0.15
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:90930168 original size:47 final size:48
Alignment explanation
Indices: 90930074--90930195 Score: 221
Period size: 47 Copynumber: 2.6 Consensus size: 48
90930064 GAGGAAGTGC
90930074 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT-
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTA
90930122 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
90930170 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
90930196 AGAGGCTAGG
Statistics
Matches: 73, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
47 39 0.53
48 34 0.47
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
Found at i:90930191 original size:71 final size:72
Alignment explanation
Indices: 90930075--90930216 Score: 236
Period size: 71 Copynumber: 2.0 Consensus size: 72
90930065 AGGAAGTGCA
*
90930075 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-C
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTC
90930138 CAGTTATT
65 CAGTTATT
90930146 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTC
90930210 CAGTTAT
65 CAGTTAT
90930217 ATGATAAAGC
Statistics
Matches: 67, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
71 46 0.69
72 21 0.31
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (72 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
AGTTATT
Found at i:90931704 original size:18 final size:18
Alignment explanation
Indices: 90931681--90931721 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
90931671 AAGTGGAGCT
*
90931681 CGTGGACGAGGCTGCGGA
1 CGTGGACGAGGCCGCGGA
*
90931699 CGTGGATGAGGCCGCGGA
1 CGTGGACGAGGCCGCGGA
90931717 CGTGG
1 CGTGG
90931722 TCGCGGAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.22, G:0.51, T:0.12
Consensus pattern (18 bp):
CGTGGACGAGGCCGCGGA
Found at i:90937934 original size:25 final size:25
Alignment explanation
Indices: 90937905--90937952 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
90937895 TTATAATATG
* * *
90937905 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
90937930 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
90937953 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:90938010 original size:20 final size:20
Alignment explanation
Indices: 90937981--90938035 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
90937971 TGCATGGGAT
90937981 TGAT-TGTATGATATGCACA
1 TGATATGTATGATATGCACA
*
90938000 TGATATGTATGATATGCAGA
1 TGATATGTATGATATGCACA
*
90938020 TGACATGTATGATATG
1 TGATATGTATGATATG
90938036 TATGATATGC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (20 bp):
TGATATGTATGATATGCACA
Found at i:90938013 original size:9 final size:9
Alignment explanation
Indices: 90937981--90938044 Score: 58
Period size: 9 Copynumber: 6.8 Consensus size: 9
90937971 TGCATGGGAT
90937981 TGAT-TGTA
1 TGATATGTA
*
90937989 TGATATGCACA
1 TGATATG--TA
90938000 TGATATGTA
1 TGATATGTA
*
90938009 TGATATGCAGA
1 TGATATG--TA
*
90938020 TGACATGTA
1 TGATATGTA
90938029 TGATATGTA
1 TGATATGTA
90938038 TGATATG
1 TGATATG
90938045 CACACGAGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
8 4 0.09
9 26 0.58
11 15 0.33
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (9 bp):
TGATATGTA
Found at i:90938056 original size:29 final size:29
Alignment explanation
Indices: 90937999--90938056 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
90937989 TGATATGCAC
* *
90937999 ATGATATGTATGATATGCAGATGACATGT
1 ATGATATGTATGATATGCACACGACATGT
*
90938028 ATGATATGTATGATATGCACACGAGATGT
1 ATGATATGTATGATATGCACACGACATGT
90938057 TCATAAATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (29 bp):
ATGATATGTATGATATGCACACGACATGT
Found at i:90938128 original size:24 final size:24
Alignment explanation
Indices: 90938101--90938268 Score: 252
Period size: 24 Copynumber: 7.0 Consensus size: 24
90938091 GAGGAAGTGC
*
90938101 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90938125 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
90938149 AAAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90938173 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90938197 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90938220 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
90938245 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
90938269 ATGATAAAGC
Statistics
Matches: 134, Mismatches: 4, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
23 29 0.22
24 75 0.56
25 21 0.16
26 9 0.07
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:90938495 original size:31 final size:31
Alignment explanation
Indices: 90938460--90938523 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
90938450 CGTTTACCGT
90938460 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
90938491 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
90938522 AA
1 AA
90938524 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:90940290 original size:27 final size:27
Alignment explanation
Indices: 90940227--90940281 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
90940217 CTTCTACAAG
90940227 AAAAAATGCACATTAAATCTAAGTGCT
1 AAAAAATGCACATTAAATCTAAGTGCT
90940254 AAAAAATGCACATTAAATCTAAGTGCT
1 AAAAAATGCACATTAAATCTAAGTGCT
90940281 A
1 A
90940282 TAAGCTGCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.49, C:0.15, G:0.11, T:0.25
Consensus pattern (27 bp):
AAAAAATGCACATTAAATCTAAGTGCT
Found at i:90943679 original size:13 final size:13
Alignment explanation
Indices: 90943661--90943695 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
90943651 CAGTGTGAAA
90943661 GACACGGGCCAGG
1 GACACGGGCCAGG
90943674 GACACGGGCCAGG
1 GACACGGGCCAGG
90943687 GACACGGGC
1 GACACGGGC
90943696 GTGTGCTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.23, C:0.31, G:0.46, T:0.00
Consensus pattern (13 bp):
GACACGGGCCAGG
Found at i:90945200 original size:18 final size:18
Alignment explanation
Indices: 90945177--90945462 Score: 112
Period size: 18 Copynumber: 15.3 Consensus size: 18
90945167 ATTAAATTAT
90945177 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
90945195 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * **
90945213 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAG
*
90945231 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A--G-TCAG
* *
90945257 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* * * *
90945275 TTATTTAGTAA-AATAAA
1 TTATTCAGTAACAGTCAG
* * * *
90945292 ATATTCAGTAGCAATTTAAG
1 TTATTCAGTAAC-A-GTCAG
90945312 TTATTCAGTAACAGTCA-
1 TTATTCAGTAACAGTCAG
* *
90945329 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAG
* *
90945348 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* *
90945366 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAG
*
90945384 TTATTCAGTAACAATCTA-
1 TTATTCAGTAACAGTC-AG
* * *
90945402 ATATCCAGTAACAGTCAAAA
1 TTATTCAGTAACAGTC--AG
* * *
90945422 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* *
90945440 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAGTCAG
90945458 TTATT
1 TTATT
90945463 TTATACCTTT
Statistics
Matches: 199, Mismatches: 51, Indels: 36
0.70 0.18 0.13
Matches are distributed among these distances:
17 14 0.07
18 135 0.68
19 7 0.04
20 27 0.14
21 2 0.01
22 1 0.01
23 2 0.01
26 11 0.06
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:90945217 original size:36 final size:36
Alignment explanation
Indices: 90945177--90945462 Score: 182
Period size: 36 Copynumber: 7.6 Consensus size: 36
90945167 ATTAAATTAT
* *
90945177 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * * *
90945213 TTATTCAATAATAACCAGTTATTCAGTATCGATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * *
90945249 TTGATCGGTTATCCAGTAACAGTCAATTATTTAGTAA-AATAAA
1 TT-A-----T-T-CAGTAACAATCAGTTATTCAGTAACAATCAA
* * * *
90945292 ATATTCAGTAGCAATTTAAGTTATTCAGTAACAGTC-A
1 TTATTCAGTAACAA--TCAGTTATTCAGTAACAATCAA
* **
90945329 TTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* *
90945366 TTATTCAGTAATATTCAGTTATTCAGTAACAATCTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATC-AA
* * * * * *
90945403 -TATCCAGTAACAGTCAAAATTATCCGGTAACAGTCAA
1 TTATTCAGTAACAATC--AGTTATTCAGTAACAATCAA
*
90945440 TTATTCAGTAATAATCAGTTATT
1 TTATTCAGTAACAATCAGTTATT
90945463 TTATACCTTT
Statistics
Matches: 185, Mismatches: 48, Indels: 34
0.69 0.18 0.13
Matches are distributed among these distances:
35 7 0.04
36 92 0.50
37 23 0.12
38 38 0.21
42 2 0.01
43 6 0.03
44 17 0.09
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
Found at i:90945711 original size:59 final size:59
Alignment explanation
Indices: 90945567--90946084 Score: 361
Period size: 59 Copynumber: 8.9 Consensus size: 59
90945557 CCGAAGCCGA
* *
90945567 AACAGTAACAGTAACAGTAGCAGTACGGTACATAGAGTACCTCATCGGAATAAATTCCGG
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAATAAA-TCCGG
* * *
90945627 AACAGTAATAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACACATCCGG
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAATAAATCCGG
* * *
90945686 AACAATAACAGTAACAGTAGCAGTATGGTACACAGAGTAACTCATCGGAATAAATTCGG
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAATAAATCCGG
* * * *
90945745 AACAGTAACAGTAATAGTAGCAGTATGGTA-ACA-A-TATCTGA-C--ACACAAAGTGCC-G
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGA-ATAAA-T-CCGG
* *** * ** * * ** * * * * * *
90945800 AATCAGT--TA-TTTTA-TACCTTTAT-TTACCCCTATTAACATGACTCAGACTCAGAT--GG
1 AA-CAGTAACAGTAACAGTAGCAGTATGGTACACAGAGT-ACCTCA-TCGGAAT-AAATCCGG
* * ** * * * * *** * *
90945856 ATACACGGATCCAACCAACA-CACCAGTATGG--CACATAGTGCCTCATCGG-CCGAAGCCGA
1 A-ACA-GTA-AC-AGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAATAAATCCGG
* * *
90945915 AACAGTAACAGTAACAGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCCGG
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAATAAATCCGG
* *
90945974 AACAGTAATAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACAAATCCGG
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAATAAATCCGG
* *
90946033 AACAATAACAGTAACAGTAGCAGTATGGTACACAGAGTAACTCATCGGAATA
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAATA
90946085 GTAACAGTAA
Statistics
Matches: 356, Mismatches: 74, Indels: 57
0.73 0.15 0.12
Matches are distributed among these distances:
51 2 0.01
52 7 0.02
53 5 0.01
54 6 0.02
55 14 0.04
56 23 0.06
57 7 0.02
58 23 0.06
59 204 0.57
60 52 0.15
61 6 0.02
62 7 0.02
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.20
Consensus pattern (59 bp):
AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAATAAATCCGG
Found at i:90946099 original size:348 final size:343
Alignment explanation
Indices: 90945452--90946495 Score: 1796
Period size: 336 Copynumber: 3.0 Consensus size: 343
90945442 ATTCAGTAAT
90945452 AATCAGTTATTTTATACCTTTATTTACCCCTATTAACATGACTCAGACTCAGATGGATACACGGA
1 AATCAGTTATTTTATACCTTTATTTACCCCTATTAACATGACTCAGACTCAGATGGATACACGGA
90945517 TCCAACCAACACACCAGTATGGCACATAGTGCCTCATCGGCCGAAGCCGAAACAGTAACAGTAAC
66 TCCAACCAACACACCAGTATGGCACATAGTGCCTCATCGGCCGAAGCCGAAACAGTAACAGTAAC
*
90945582 AGTAGCAGTACGGTACATAGAGTACCTCATCGGAATAAATTCCGGAACAGTAATAGTAACAGTAG
131 AGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAA-TCCGGAACAGTAATAGTAACAGTAG
*
90945647 CAGTATGGTACACAGAGTACCTCATCGGAACACATCCGGAACAATAACAGTAACAGTAGCAGTAT
195 CAGTATGGTACACAGAGTACCTCATCGGAACAAATCCGGAACAATAACAGTAACAGTAGCAGTAT
90945712 GGTACACAGAGTAACTCATCGGAATAAATTCGGAACAGTAACAGTAATAGTAGCAGTATGGTAAC
260 GGTACACAGAGTAACTCATCGGAAT-AA--CGGAACAGTAACAGTAA-AGTAGCAGTATGGTAAC
90945777 AATATCTGACACACAAAGTGCCG
321 AATATCTGACACACAAAGTGCCG
90945800 AATCAGTTATTTTATACCTTTATTTACCCCTATTAACATGACTCAGACTCAGATGGATACACGGA
1 AATCAGTTATTTTATACCTTTATTTACCCCTATTAACATGACTCAGACTCAGATGGATACACGGA
90945865 TCCAACCAACACACCAGTATGGCACATAGTGCCTCATCGGCCGAAGCCGAAACAGTAACAGTAAC
66 TCCAACCAACACACCAGTATGGCACATAGTGCCTCATCGGCCGAAGCCGAAACAGTAACAGTAAC
90945930 AGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCCGGAACAGTAATAGTAACAGTAGC
131 AGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCCGGAACAGTAATAGTAACAGTAGC
90945995 AGTATGGTACACAGAGTACCTCATCGGAACAAATCCGGAACAATAACAGTAACAGTAGCAGTATG
196 AGTATGGTACACAGAGTACCTCATCGGAACAAATCCGGAACAATAACAGTAACAGTAGCAGTATG
*
90946060 GTACACAGAGTAACTCATCGGAAT-A-GTAACAGTAAC-----AGTAGCAGTATGGTAACAATAT
261 GTACACAGAGTAACTCATCGGAATAACGGAACAGTAACAGTAAAGTAGCAGTATGGTAACAATAT
*
90946118 CTGACACACAAAGTGCTG
326 CTGACACACAAAGTGCCG
90946136 AATCAGTTATTTTATACCTTTATTTACCCCTATTAACATGACTCAGACTCAGATGGATACACGGA
1 AATCAGTTATTTTATACCTTTATTTACCCCTATTAACATGACTCAGACTCAGATGGATACACGGA
*
90946201 TCCAACCAACACACCAGTATGGCACATAGTGCCTCATCGGCTGAAGCCGAAACAGTAACAGTAAC
66 TCCAACCAACACACCAGTATGGCACATAGTGCCTCATCGGCCGAAGCCGAAACAGTAACAGTAAC
*
90946266 AGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCTGGAACAGTAATAGTAACAGTAGC
131 AGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCCGGAACAGTAATAGTAACAGTAGC
* * * *
90946331 AGTTTGGTACACAGAGTACCTCATCGGAACAAATTTAGAACAGTAACAGTAACAGTAACAGTAGC
196 AGTATGGTACACAGAGTACCTCATCGGAACAAA--T----CCGGAACAATAACAGTAACAGTAGC
* *
90946396 AGTATGGTACACAGAGTACCTCATCGAAATACATCCGGAACAGTAACAGTAACAGTAGCAGTATG
255 AGTATGGTACACAGAGTAACTCATCGGAATA-A--CGGAACAGTAACAGTAA-AGTAGCAGTATG
90946461 GTAACAATATCTGACACACAAAGTGCCG
316 GTAACAATATCTGACACACAAAGTGCCG
90946489 AATCAGT
1 AATCAGT
90946496 AACGGTAACA
Statistics
Matches: 665, Mismatches: 14, Indels: 29
0.94 0.02 0.04
Matches are distributed among these distances:
336 264 0.40
338 1 0.00
342 60 0.09
344 1 0.00
345 1 0.00
347 124 0.19
348 168 0.25
353 46 0.07
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (343 bp):
AATCAGTTATTTTATACCTTTATTTACCCCTATTAACATGACTCAGACTCAGATGGATACACGGA
TCCAACCAACACACCAGTATGGCACATAGTGCCTCATCGGCCGAAGCCGAAACAGTAACAGTAAC
AGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCCGGAACAGTAATAGTAACAGTAGC
AGTATGGTACACAGAGTACCTCATCGGAACAAATCCGGAACAATAACAGTAACAGTAGCAGTATG
GTACACAGAGTAACTCATCGGAATAACGGAACAGTAACAGTAAAGTAGCAGTATGGTAACAATAT
CTGACACACAAAGTGCCG
Found at i:90946323 original size:59 final size:59
Alignment explanation
Indices: 90946251--90946463 Score: 291
Period size: 59 Copynumber: 3.5 Consensus size: 59
90946241 CTGAAGCCGA
* *
90946251 AACAGTAACAGTAACAGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCTGG
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACAAATCTGG
* * *
90946310 AACAGTAATAGTAACAGTAGCAGTTTGGTACACAGAGTACCTCATCGGAACAAATTTAGAACAG
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACAAATCT-G----G
* * * *
90946374 TAACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGAAATACATCCGG
1 -AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACAAATCTGG
90946434 AACAGTAACAGTAACAGTAGCAGTATGGTA
1 AACAGTAACAGTAACAGTAGCAGTATGGTA
90946464 ACAATATCTG
Statistics
Matches: 136, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
59 82 0.60
60 2 0.01
64 2 0.01
65 50 0.37
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.20
Consensus pattern (59 bp):
AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACAAATCTGG
Found at i:90946380 original size:6 final size:6
Alignment explanation
Indices: 90946369--90946399 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
90946359 ACAAATTTAG
*
90946369 AACAGT AACAGT AACAGT AACAGT AGCAGT A
1 AACAGT AACAGT AACAGT AACAGT AACAGT A
90946400 TGGTACACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:90946381 original size:65 final size:64
Alignment explanation
Indices: 90946251--90946458 Score: 273
Period size: 65 Copynumber: 3.3 Consensus size: 64
90946241 CTGAAGCCGA
* *
90946251 AACAGTAACAGTAACAGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCTG----G-
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACAAATCTGAACAGT
* * *
90946310 AACAGTAATAGTAACAGTAGCAGTTTGGTACACAGAGTACCTCATCGGAACAAATTTAGAACAGT
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACAAATCT-GAACAGT
* * * *
90946375 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGAAATACATCCGGAACAGT
1 AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACAAAT-CTGAACAGT
*
90946440 AACAGTAACAGTAGCAGTA
1 AACAGTAACAGTAACAGTA
90946459 TGGTAACAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
59 52 0.40
60 1 0.01
64 1 0.01
65 75 0.58
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.20
Consensus pattern (64 bp):
AACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACAAATCTGAACAGT
Found at i:90946512 original size:45 final size:45
Alignment explanation
Indices: 90946461--90946589 Score: 233
Period size: 45 Copynumber: 2.9 Consensus size: 45
90946451 TAGCAGTATG
*
90946461 GTAACAATA-TCTGACACACAAAGTGCCGAATCAGTAACGGTAACA
1 GTAACAATATTC-GACACACAAAGTGCCGAATCGGTAACGGTAACA
90946506 GTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGTAACA
1 GTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGTAACA
90946551 GTAACAATATTCGACACACAAAGTGCCGAATCGGTAACG
1 GTAACAATATTCGACACACAAAGTGCCGAATCGGTAACG
90946590 ATAATGTAAC
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
45 80 0.98
46 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.18
Consensus pattern (45 bp):
GTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGTAACA
Found at i:90958670 original size:29 final size:29
Alignment explanation
Indices: 90958628--90958701 Score: 148
Period size: 29 Copynumber: 2.6 Consensus size: 29
90958618 GTGCCGATAT
90958628 CATGGCCCGAAGCCAACTCATTCAACATC
1 CATGGCCCGAAGCCAACTCATTCAACATC
90958657 CATGGCCCGAAGCCAACTCATTCAACATC
1 CATGGCCCGAAGCCAACTCATTCAACATC
90958686 CATGGCCCGAAGCCAA
1 CATGGCCCGAAGCCAA
90958702 ATCGATATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.31, C:0.38, G:0.16, T:0.15
Consensus pattern (29 bp):
CATGGCCCGAAGCCAACTCATTCAACATC
Found at i:90962307 original size:33 final size:34
Alignment explanation
Indices: 90962242--90962309 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
90962232 TTAAACCCTA
* *
90962242 ACTTAATTTATTTAAAACACTAAAACTCTAATTT
1 ACTTAATCTATTTAAAACACAAAAACTCTAATTT
90962276 ACTTAATCTATTTAAAA-ACAAAAAC-CTTAATTT
1 ACTTAATCTATTTAAAACACAAAAACTC-TAATTT
90962309 A
1 A
90962310 ATCAACCTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
32 1 0.03
33 14 0.45
34 16 0.52
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (34 bp):
ACTTAATCTATTTAAAACACAAAAACTCTAATTT
Found at i:90962342 original size:22 final size:22
Alignment explanation
Indices: 90962317--90962370 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
90962307 TTAATCAACC
*
90962317 TTAAACCCTAATTTAATTTATT
1 TTAAACCCTAACTTAATTTATT
* *
90962339 TTAAACACTAACTTATTTTATT
1 TTAAACCCTAACTTAATTTATT
* *
90962361 TAAAATCCTA
1 TTAAACCCTA
90962371 GAACCCTAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (22 bp):
TTAAACCCTAACTTAATTTATT
Found at i:90962441 original size:24 final size:23
Alignment explanation
Indices: 90962411--90962460 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
90962401 CATAAACCAT
90962411 AAACCCTAAGTCCTAATTTA-TTTA
1 AAACCCTAA--CCTAATTTATTTTA
*
90962435 AAACCCTAACTTAATTTATTTTA
1 AAACCCTAACCTAATTTATTTTA
90962458 AAA
1 AAA
90962461 TCATTAACCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 8 0.33
23 7 0.29
24 9 0.38
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.38
Consensus pattern (23 bp):
AAACCCTAACCTAATTTATTTTA
Found at i:90962491 original size:94 final size:92
Alignment explanation
Indices: 90962313--90962492 Score: 227
Period size: 94 Copynumber: 1.9 Consensus size: 92
90962303 TAATTTAATC
* * * * *
90962313 AACCTTAAACCCTAATTTAATTTATTTTAAACACTAACTTATTTTATTTAAAATCCTAGAACCCT
1 AACCATAAACCCTAATCTAATTTATTTAAAACACTAACTTAATTTATTTAAAATCATAGAACCCT
**
90962378 AATTTACTTAATCTATTTAAAACCATA
66 AATTTAAATAATCTATTTAAAACCATA
* *
90962405 AACCATAAACCCTAAGTCCTAATTTATTTAAAACCCTAACTTAATTTATTTTAAAATCAT-TAAC
1 AACCATAAACCCTAA-T-CTAATTTATTTAAAACACTAACTTAATTTA-TTTAAAATCATAGAAC
* *
90962469 CCTAATTTAAATAATTTTTTTAAA
63 CCTAATTTAAATAATCTATTTAAA
90962493 TAACACTAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
92 14 0.19
93 1 0.01
94 49 0.66
95 10 0.14
ACGTcount: A:0.41, C:0.18, G:0.01, T:0.40
Consensus pattern (92 bp):
AACCATAAACCCTAATCTAATTTATTTAAAACACTAACTTAATTTATTTAAAATCATAGAACCCT
AATTTAAATAATCTATTTAAAACCATA
Found at i:90970781 original size:12 final size:12
Alignment explanation
Indices: 90970764--90970802 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
90970754 TATATATTTT
90970764 TCTTTTATTAAA
1 TCTTTTATTAAA
90970776 TCTTTT-TTATAA
1 TCTTTTATTA-AA
*
90970788 TCTTTTATTTAA
1 TCTTTTATTAAA
90970800 TCT
1 TCT
90970803 AAATATACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 3 0.12
12 19 0.79
13 2 0.08
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (12 bp):
TCTTTTATTAAA
Found at i:90970851 original size:19 final size:19
Alignment explanation
Indices: 90970827--90970871 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
90970817 TAACATTTTT
90970827 TAATAT-TTAAATTATAATA
1 TAATATATT-AATTATAATA
* *
90970846 TAATATATTTATTATTATA
1 TAATATATTAATTATAATA
90970865 TAATATA
1 TAATATA
90970872 AATTGCATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 21 0.91
20 2 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATATTAATTATAATA
Found at i:90970998 original size:3 final size:3
Alignment explanation
Indices: 90970990--90971030 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
90970980 AAACAAATCT
90970990 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
90971031 ATTTCACCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:90972311 original size:17 final size:17
Alignment explanation
Indices: 90972271--90972311 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
90972261 TTATTATAAA
*
90972271 ATTAATTTTTATTTTTT
1 ATTAAATTTTATTTTTT
*
90972288 AAT-AATTTTATTTTTT
1 ATTAAATTTTATTTTTT
90972304 ATTAAATT
1 ATTAAATT
90972312 AATTCTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTAAATTTTATTTTTT
Found at i:90972839 original size:19 final size:21
Alignment explanation
Indices: 90972815--90972861 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
90972805 ACAATGTGTT
*
90972815 TTATTTTATGAA-TTTTAG-A
1 TTATTTTATAAATTTTTAGAA
*
90972834 TTATTTGATAAATTTTTAGAA
1 TTATTTTATAAATTTTTAGAA
90972855 TTATTTT
1 TTATTTT
90972862 TATAGATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 10 0.43
20 6 0.26
21 7 0.30
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.60
Consensus pattern (21 bp):
TTATTTTATAAATTTTTAGAA
Found at i:90977049 original size:13 final size:14
Alignment explanation
Indices: 90977031--90977061 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
90977021 AAAATAATCA
90977031 AATAAATTACAG-T
1 AATAAATTACAGTT
90977044 AATAAATTACAGTT
1 AATAAATTACAGTT
90977058 AATA
1 AATA
90977062 GGATAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (14 bp):
AATAAATTACAGTT
Found at i:90977773 original size:13 final size:13
Alignment explanation
Indices: 90977738--90977794 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 13
90977728 AATTTTTATG
*
90977738 ATTGAGTTGGGTA
1 ATTGGGTTGGGTA
* *
90977751 ATTAGATTGGGTA
1 ATTGGGTTGGGTA
90977764 ATTGGGTTGGGT-
1 ATTGGGTTGGGTA
90977776 -TT-GGTTGGGTA
1 ATTGGGTTGGGTA
*
90977787 CTTGGGTT
1 ATTGGGTT
90977795 TATATATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
10 8 0.22
11 2 0.06
12 2 0.06
13 24 0.67
ACGTcount: A:0.16, C:0.02, G:0.40, T:0.42
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:90982845 original size:83 final size:83
Alignment explanation
Indices: 90982758--90982914 Score: 192
Period size: 83 Copynumber: 1.9 Consensus size: 83
90982748 GCCTTGGTCC
* * * * *
90982758 CCTCCC-AAAATGATTTTTTTTCAATCTAGTC-TTCTTATAAATAGAGAAATTATAAATTAGTAT
1 CCTCCCTAAAATGAATATTTTTCAATC-AATCATT-TTATAAATAAAGAAATTATAAATTAATAT
*
90982821 ATAGTGAAATTGTGCTTTGG
64 ATAGTAAAATTGTGCTTTGG
* * * *
90982841 CCTCCCTAAAATGAATATTTTTGATTCAATCATTTTATGAATAAATAAATTATAAATTAATATAT
1 CCTCCCTAAAATGAATATTTTTCAATCAATCATTTTATAAATAAAGAAATTATAAATTAATATAT
90982906 AGTAAAATT
66 AGTAAAATT
90982915 TCACTTTAGC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
83 44 0.71
84 18 0.29
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.41
Consensus pattern (83 bp):
CCTCCCTAAAATGAATATTTTTCAATCAATCATTTTATAAATAAAGAAATTATAAATTAATATAT
AGTAAAATTGTGCTTTGG
Found at i:90983751 original size:126 final size:126
Alignment explanation
Indices: 90983526--90984020 Score: 758
Period size: 126 Copynumber: 3.9 Consensus size: 126
90983516 AGGTTAATTA
90983526 AGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTT
1 AGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTT
** * * *
90983591 TGGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTATAATAGTTCATAGAAAAATAATTCTG
66 CAGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAATAATTCTG
* * * * * *
90983652 AGTAGACGTTTCTAAATAAATAGTGTTAAAAACGCTTCAAGCAAGATGCATTGTAAGCAAAATTT
1 AGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTT
90983717 CAGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAATAATTCTG
66 CAGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAATAATTCTG
* * *
90983778 AGTAGACGTTTCTGAACAAATAGTTTCAAAAATGCTTCAAGCAGGATGCACTGTCAGTAAAATTT
1 AGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTT
* * * * * * *
90983843 CGGAAAAAAGCTCCTACGTGGACGTGTTTTTCCTATAGTAGTTCGTAGAAAAATAATTTTG
66 CAGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAATAATTCTG
*
90983904 AGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTCAG-AAAATTT
1 AGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTT
* * *
90983968 TAGAAAAAAGCTTCCACGTGGACGCGCTTTTGCTACAGTAGTTTGTAGAAAAA
66 CAGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAA
90984021 CTGAGGCTAT
Statistics
Matches: 330, Mismatches: 39, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
125 51 0.15
126 279 0.85
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (126 bp):
AGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTT
CAGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAATAATTCTG
Found at i:90988276 original size:30 final size:28
Alignment explanation
Indices: 90988242--90988320 Score: 86
Period size: 30 Copynumber: 2.7 Consensus size: 28
90988232 GTTGAACTGT
* *
90988242 TGGGCCCGGTGATTGTGGCAGCGCTATTGA
1 TGGGCCTGCTGATTGTGG--GCGCTATTGA
* *
90988272 TGGGCTTGCTGATTGTATGGGCGCTGTTGA
1 TGGGCCTGCTGATTG--TGGGCGCTATTGA
90988302 TGGGCCTGCTGATTGTGGG
1 TGGGCCTGCTGATTGTGGG
90988321 GGTGCTGTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
28 4 0.10
30 35 0.83
32 3 0.07
ACGTcount: A:0.10, C:0.16, G:0.42, T:0.32
Consensus pattern (28 bp):
TGGGCCTGCTGATTGTGGGCGCTATTGA
Found at i:90988312 original size:15 final size:16
Alignment explanation
Indices: 90988267--90988336 Score: 69
Period size: 15 Copynumber: 4.6 Consensus size: 16
90988257 TGGCAGCGCT
*
90988267 ATTGATGGGCTTGCTG
1 ATTGATGGGCCTGCTG
90988283 ATTGTATGGG-C-GCTG
1 ATTG-ATGGGCCTGCTG
90988298 -TTGATGGGCCTGCTG
1 ATTGATGGGCCTGCTG
**
90988313 ATTG-TGGGGGTGCTG
1 ATTGATGGGCCTGCTG
90988328 -TTGATGGGC
1 ATTGATGGGC
90988337 TTGCGTCGTC
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
13 5 0.11
14 7 0.16
15 21 0.47
16 7 0.16
17 5 0.11
ACGTcount: A:0.10, C:0.13, G:0.43, T:0.34
Consensus pattern (16 bp):
ATTGATGGGCCTGCTG
Found at i:90988328 original size:30 final size:30
Alignment explanation
Indices: 90988262--90988336 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
90988252 GATTGTGGCA
* * *
90988262 GCGCTATTGATGGGCTTGCTGATTGTATGG
1 GCGCTGTTGATGGGCCTGCTGATTGTAGGG
*
90988292 GCGCTGTTGATGGGCCTGCTGATTGTGGGG
1 GCGCTGTTGATGGGCCTGCTGATTGTAGGG
*
90988322 GTGCTGTTGATGGGC
1 GCGCTGTTGATGGGC
90988337 TTGCGTCGTC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.09, C:0.15, G:0.43, T:0.33
Consensus pattern (30 bp):
GCGCTGTTGATGGGCCTGCTGATTGTAGGG
Found at i:90989899 original size:21 final size:20
Alignment explanation
Indices: 90989864--90989917 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 20
90989854 AAAATTAAAT
90989864 TAAA-AAAATTTAAATTTGCA
1 TAAATAAAA-TTAAATTTGCA
90989884 TAAATGAAAATTAAATTTGCA
1 TAAAT-AAAATTAAATTTGCA
90989905 TAAAT-AAATTAAA
1 TAAATAAAATTAAA
90989918 GTATCACTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.25
20 4 0.12
21 16 0.50
22 4 0.12
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (20 bp):
TAAATAAAATTAAATTTGCA
Found at i:90991334 original size:29 final size:29
Alignment explanation
Indices: 90991303--90991380 Score: 90
Period size: 28 Copynumber: 2.7 Consensus size: 29
90991293 TAAAATGCAA
*
90991303 AAAAATTATAAAATTATTTTTAA-AAATT
1 AAAAATTTTAAAATTATTTTTAATAAATT
*
90991331 AAAAATCTTTAAAATTA--TTAAATAAATTT
1 AAAAAT-TTTAAAATTATTTTTAATAAA-TT
*
90991360 AAAAATTTTAAAAATATTTTT
1 AAAAATTTTAAAATTATTTTT
90991381 TTAATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
27 4 0.10
28 18 0.44
29 17 0.41
30 2 0.05
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (29 bp):
AAAAATTTTAAAATTATTTTTAATAAATT
Found at i:90991350 original size:19 final size:18
Alignment explanation
Indices: 90991328--90991374 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
90991318 ATTTTTAAAA
*
90991328 ATTAAAAATCTTTAAAATT
1 ATTAAAAAT-TTAAAAATT
90991347 ATTAAATAAATTTAAAAATT
1 ATT-AA-AAATTTAAAAATT
90991367 -TTAAAAAT
1 ATTAAAAAT
90991375 ATTTTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 4 0.16
18 2 0.08
19 5 0.20
20 10 0.40
21 4 0.16
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTAAAAATTTAAAAATT
Found at i:90991369 original size:9 final size:9
Alignment explanation
Indices: 90991320--90991374 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
90991310 ATAAAATTAT
90991320 TTTTAAAAA
1 TTTTAAAAA
90991329 --TTAAAAA
1 TTTTAAAAA
90991336 TCTTT-AAAA
1 T-TTTAAAAA
90991345 TTATTAAATAA
1 TT-TTAAA-AA
*
90991356 ATTTAAAAA
1 TTTTAAAAA
90991365 TTTTAAAAA
1 TTTTAAAAA
90991374 T
1 T
90991375 ATTTTTTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
7 7 0.18
8 1 0.03
9 18 0.47
10 9 0.24
11 3 0.08
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:90991378 original size:19 final size:19
Alignment explanation
Indices: 90991321--90991378 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
90991311 TAAAATTATT
*
90991321 TTTAAAAA--TTAAAAATC
1 TTTAAAAATTTTAAAAATA
90991338 TTT-AAAATTATTAAATAA-A
1 TTTAAAAATT-TTAAA-AATA
90991357 TTTAAAAATTTTAAAAATA
1 TTTAAAAATTTTAAAAATA
90991376 TTT
1 TTT
90991379 TTTTAATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
16 4 0.12
17 3 0.09
18 2 0.06
19 17 0.50
20 8 0.24
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
TTTAAAAATTTTAAAAATA
Found at i:90994626 original size:18 final size:18
Alignment explanation
Indices: 90994603--90994646 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
90994593 GTTATATTGC
*
90994603 TCACATGATAAAATCAAT
1 TCACATAATAAAATCAAT
90994621 TCACATAATAAAATCAAT
1 TCACATAATAAAATCAAT
90994639 TCACATAA
1 TCACATAA
90994647 CATAACATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.52, C:0.18, G:0.02, T:0.27
Consensus pattern (18 bp):
TCACATAATAAAATCAAT
Found at i:90994663 original size:28 final size:28
Alignment explanation
Indices: 90994623--90994677 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
90994613 AAATCAATTC
* *
90994623 ACATAATAAAATCA-ATTCACATAACATA
1 ACATAACAAAATCATA-ACACATAACATA
*
90994651 ACATAACATAATCATAACACATAACAT
1 ACATAACAAAATCATAACACATAACAT
90994678 TGATATATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (28 bp):
ACATAACAAAATCATAACACATAACATA
Found at i:90997201 original size:24 final size:24
Alignment explanation
Indices: 90997141--90997207 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
90997131 GAACTCACAA
*
90997141 TAGCTCGTATGAGCTTACCGATAT
1 TAGCTCGTAAGAGCTTACCGATAT
*
90997165 TCAGCTCAG-AAGAGCTTATCGATTAT
1 T-AGCTC-GTAAGAGCTTACCGA-TAT
*
90997191 T-GCTCGTAAGAGTTTAC
1 TAGCTCGTAAGAGCTTAC
90997208 ATGTATAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
23 1 0.03
24 13 0.37
25 16 0.46
26 5 0.14
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (24 bp):
TAGCTCGTAAGAGCTTACCGATAT
Found at i:90999953 original size:23 final size:24
Alignment explanation
Indices: 90999900--90999956 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
90999890 AAAAAATAGT
*
90999900 AAATAATAATATATTAATAAGAATT
1 AAATAAT-ATATATTAATAAGAATC
*
90999925 ATAATAATATATATTAATAATAA-C
1 A-AATAATATATATTAATAAGAATC
90999949 AAATAATA
1 AAATAATA
90999957 AAAAATAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 7 0.24
24 1 0.03
25 15 0.52
26 6 0.21
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAATATATATTAATAAGAATC
Found at i:91000028 original size:33 final size:35
Alignment explanation
Indices: 90999974--91000053 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 35
90999964 ACAATGGGTT
* *
90999974 AATAAAGATAAT-AGTAATAATAGAGGTAA-AATA
1 AATAAATATAATAAGTAATAATAGAGATAATAATA
* *
91000007 AATAAATATAATAAG-AGTAATAGTGATAATAATA
1 AATAAATATAATAAGTAATAATAGAGATAATAATA
*
91000041 CA-AAATATAATAA
1 AATAAATATAATAA
91000054 TAACAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
33 33 0.82
34 7 0.17
ACGTcount: A:0.61, C:0.01, G:0.11, T:0.26
Consensus pattern (35 bp):
AATAAATATAATAAGTAATAATAGAGATAATAATA
Found at i:91000104 original size:3 final size:3
Alignment explanation
Indices: 91000096--91000188 Score: 50
Period size: 3 Copynumber: 31.7 Consensus size: 3
91000086 ATTTTAATGG
* * * *
91000096 TAA TAA TAA GGAA -AA TAA TAA CAA TAA T-A CAA TAA TAA TAA -AG
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
91000139 TAG TAA TAA AAA TAA AAA TAA CAA TAA TAG TAA AAA T-A TAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
91000184 TAA TA
1 TAA TA
91000189 GTAAAAGAAA
Statistics
Matches: 67, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
2 6 0.09
3 56 0.84
4 5 0.07
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.25
Consensus pattern (3 bp):
TAA
Found at i:91000134 original size:11 final size:10
Alignment explanation
Indices: 91000109--91000193 Score: 65
Period size: 9 Copynumber: 8.9 Consensus size: 10
91000099 TAATAAGGAA
*
91000109 AATAAT-AAC
1 AATAATAAAT
91000118 AATAATACAAT
1 AATAATA-AAT
91000129 AATAATAAAGT
1 AATAATAAA-T
*
91000140 AGTAATAAA-
1 AATAATAAAT
91000149 AATAA-AAAT
1 AATAATAAAT
*
91000158 AACAAT-AAT
1 AATAATAAAT
*
91000167 AGTAA-AAAT
1 AATAATAAAT
91000176 -ATAATAAAT
1 AATAATAAAT
*
91000185 AATAGTAAA
1 AATAATAAA
91000194 AGAAAATAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
8 6 0.10
9 27 0.45
10 9 0.15
11 18 0.30
ACGTcount: A:0.67, C:0.04, G:0.05, T:0.25
Consensus pattern (10 bp):
AATAATAAAT
Found at i:91001690 original size:44 final size:44
Alignment explanation
Indices: 91001603--91002342 Score: 385
Period size: 44 Copynumber: 16.6 Consensus size: 44
91001593 AATCTGACCT
* * * *
91001603 ACTGCAACTTCAGAG-GTATAGGACTT-GTCGCTTTAATCCGCTCC
1 ACTGCAACTTCAGAGAG-ATAAGA-TTAGTAGCTTCAATCTGCTCC
* * *
91001647 ACTGAAACTTCATAGAGATAGGATTAGTAGCTTCAATCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATTAGTAGCTTCAATCTGCTCC
** * * * *
91001691 GTTGCAACTTCA-AGGAAATAAGATTGGTATCTTCAGTCTGCTCC
1 ACTGCAACTTCAGA-GAGATAAGATTAGTAGCTTCAATCTGCTCC
* ** *
91001735 ACTGCAACTTCAGGGAGATAAGACTT-GTAATTTCAA-CATGCTCT
1 ACTGCAACTTCAGAGAGATAAGA-TTAGTAGCTTCAATC-TGCTCC
* * * * * *
91001779 ACTGCTACTTCAGAGAGATAAGGTTTGCTATCTTCGATCTACTCC
1 ACTGCAACTTCAGAGAGATAAGATTAG-TAGCTTCAATCTGCTCC
* * *
91001824 ATTGCAACTTCAG-GTAGATAAGATCTA-TTGTCTTCAGTCTGCTCC
1 ACTGCAACTTCAGAG-AGATAAGAT-TAGTAG-CTTCAATCTGCTCC
* * *
91001869 ACTGCAACTTCAGGGAGATAAGACTAGT-GACTTCAAGCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATTAGTAG-CTTCAATCTGCTCC
* * * * ** *
91001913 ACTGCAACTTTAGGGAGATAAGGTT--T-GTTTTGATCTGCTCT
1 ACTGCAACTTCAGAGAGATAAGATTAGTAGCTTCAATCTGCTCC
* * *
91001954 A-TGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTTAATCTGTTCC
1 ACTGCAACTTCAGAGAGATAAGA--T-T-A---GTAGCTTCAATCTGCTCC
* * *
91002004 ACTGCAACTTCAG-GGGAATAAGATTCGCTATCTTCAATCTGCTCC
1 ACTGCAACTTCAGAGAG-ATAAGATTAG-TAGCTTCAATCTGCTCC
* * * *
91002049 ACTGCAACTTCAGGGAGATAAGACTTA-TAACTTTAACCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGA-TTAGTAGCTTCAATCTGCTCC
* * * *
91002093 ACTGCAACTTCA-AGGAGATAAGGTT--T-GCTAT-GATCTGTTCT
1 ACTGCAACTTCAGA-GAGATAAGATTAGTAGCT-TCAATCTGCTCC
* * *
91002134 ACTGCAACTTCAGATAGATAAGATCTATAATTTATAGCTTCAATCTGTTCC
1 ACTGCAACTTCAGAGAGATAAGA--T-T-A---GTAGCTTCAATCTGCTCC
* * * * * * *
91002185 ACTGCAACTTTA-AGGAAATGAGATTCGCTATCTTTAGTCTGCTCC
1 ACTGCAACTTCAGA-GAGATAAGATTAG-TAGCTTCAATCTGCTCC
* * *
91002230 ACTGTAACTTCA-AGGAGATAAGACTT--TATCTTCAACCTGCTCC
1 ACTGCAACTTCAGA-GAGATAAGA-TTAGTAGCTTCAATCTGCTCC
* * * *
91002273 ACTGCTACTTTAGAGAGATAAGGTTTAGTGGCTTCAATCTGCTCC
1 ACTGCAACTTCAGAGAGATAA-GATTAGTAGCTTCAATCTGCTCC
*
91002318 ATTGCAACTTCAG-GAAGATAAGATT
1 ACTGCAACTTCAGAG-AGATAAGATT
91002343 CGTCATTATA
Statistics
Matches: 537, Mismatches: 108, Indels: 102
0.72 0.14 0.14
Matches are distributed among these distances:
40 18 0.03
41 37 0.07
42 6 0.01
43 42 0.08
44 199 0.37
45 159 0.30
46 9 0.02
48 2 0.00
49 3 0.01
50 17 0.03
51 45 0.08
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
ACTGCAACTTCAGAGAGATAAGATTAGTAGCTTCAATCTGCTCC
Found at i:91001879 original size:134 final size:131
Alignment explanation
Indices: 91001642--91002070 Score: 413
Period size: 134 Copynumber: 3.2 Consensus size: 131
91001632 GCTTTAATCC
* * * * * *
91001642 GCTCCACTGAAACTTCATAGAGAT-AGGATTAGTAGCTTCAATCTGCTCCGTTGCAACTTCAAGG
1 GCTCCACTGCAACTTCAGAGAGATAAGG-TTTGT-TCTTCGATCTGCTCCATTGCAACTTC-AGG
* * * *
91001706 AAATAAGAT-TGGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCA
63 AGATAAGATCTAGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCA
91001770 A-CAT
128 AGC-T
* * *
91001774 GCTCTACTGCTACTTCAGAGAGATAAGGTTTGCTATCTTCGATCTACTCCATTGCAACTTCAGGT
1 GCTCCACTGCAACTTCAGAGAGATAAGGTTTG-T-TCTTCGATCTGCTCCATTGCAACTTCAGG-
* * *
91001839 AGATAAGATCTATTGTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTGACTTCA
63 AGATAAGATCTAGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCA
91001904 AGCT
128 AGCT
* * *
91001908 GCTCCACTGCAACTTTAGGGAGATAAGGTTTGTT-TT-GATCTGCTCTA-TGCAACTTCAGAGAG
1 GCTCCACTGCAACTTCAGAGAGATAAGGTTTGTTCTTCGATCTGCTCCATTGCAACTTCAG-GAG
* * * * * *
91001970 ATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTGCAACTTCAGGG-GAATAAGATTCGCTA
65 ATAAGATC--T-A-GTAT--CTTCAGTCTGCTCCACTGCAACTTCAGGGAG-ATAAGACTAG-TA
* *
91002034 TCTTCAATCT
122 ACTTCAAGCT
*
91002044 GCTCCACTGCAACTTCAGGGAGATAAG
1 GCTCCACTGCAACTTCAGAGAGATAAG
91002071 ACTTATAACT
Statistics
Matches: 251, Mismatches: 32, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
129 21 0.08
130 10 0.04
131 3 0.01
132 28 0.11
133 39 0.16
134 80 0.32
135 35 0.14
136 35 0.14
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (131 bp):
GCTCCACTGCAACTTCAGAGAGATAAGGTTTGTTCTTCGATCTGCTCCATTGCAACTTCAGGAGA
TAAGATCTAGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAAGC
T
Found at i:91002058 original size:180 final size:180
Alignment explanation
Indices: 91001854--91002298 Score: 658
Period size: 180 Copynumber: 2.5 Consensus size: 180
91001844 AGATCTATTG
* *
91001854 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTGACTTCAAGCTGCTCCACTGCA
1 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA-TAACTTCAACCTGCTCCACTGCA
* * *
91001919 ACTTTAGGGAGATAAGGTTTGTTTTGATCTGCTCTA-TGCAACTTCAGAGAGATAAGATCTGTAA
65 ACTTTAGGGAGATAAGGTTTGCTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAA
* * *
91001983 TTTATAGCTTTAATCTGTTCCACTGCAACTTCAGGGGAATAAGATTCGCTA
130 TTTATAGCTTCAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCTA
* *
91002034 TCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTATAACTTTAACCTGCTCCACTGCA
1 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAC-TATAACTTCAACCTGCTCCACTGCA
* * * *
91002099 ACTTCAAGGAGATAAGGTTTGCTATGATCTGTTCTACTGCAACTTCAGATAGATAAGATCTATAA
65 ACTTTAGGGAGATAAGGTTTGCTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAA
* *
91002164 TTTATAGCTTCAATCTGTTCCACTGCAACTTTAAGGAAATGAGATTCGCTA
130 TTTATAGCTTCAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCTA
* * * * * *
91002215 TCTTTAGTCTGCTCCACTGTAACTTCAAGGAGATAAGACTTTATCTTCAACCTGCTCCACTGCTA
1 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTATAACTTCAACCTGCTCCACTGCAA
*
91002280 CTTTAGAGAGATAAGGTTT
66 CTTTAGGGAGATAAGGTTT
91002299 AGTGGCTTCA
Statistics
Matches: 236, Mismatches: 27, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
180 127 0.54
181 109 0.46
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (180 bp):
TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTATAACTTCAACCTGCTCCACTGCAA
CTTTAGGGAGATAAGGTTTGCTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAAT
TTATAGCTTCAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCTA
Found at i:91002069 original size:96 final size:93
Alignment explanation
Indices: 91001861--91002252 Score: 320
Period size: 96 Copynumber: 4.3 Consensus size: 93
91001851 TTGTCTTCAG
* * * * * *
91001861 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-C-T-A-GT-GA-CTTCAAGCTGCTCCACTGCAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTTAATTTATAGCTTTAATCTGTTCCACTGCAA
* * * *
91001920 CTTTAGGGAGATAAGGTTTG-T-T-TTGA
66 CTTCAGGGA-ATAAGATTCGCTATCTTAA
*
91001946 TCTGCTCTA-TGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTGCA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCT-TAATTTATAGCTTTAATCTGTTCCACTGCA
91002010 ACTTCAGGGGAATAAGATTCGCTATCTTCAA
65 ACTTCA-GGGAATAAGATTCGCTATCTT-AA
* * *
91002041 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTT-A--TA-A-CTTTAACCTGCTCCACTGCAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTTAATTTATAGCTTTAATCTGTTCCACTGCAA
* * * *
91002100 CTTCAAGGAGATAAGGTTTGCTA---TGA
66 CTTCAGGGA-ATAAGATTCGCTATCTTAA
* * * *
91002126 TCTGTTCTACTGCAACTTCAGATAGATAAGATCTATAATTTATAGCTTCAATCTGTTCCACTGCA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCT-TAATTTATAGCTTTAATCTGTTCCACTGCA
* * * *
91002191 ACTTTAAGGAAATGAGATTCGCTATCTTTAG
65 AC-TTCAGGGAATAAGATTCGCTATC-TTAA
*
91002222 TCTGCTCCACTGTAACTTCA-AGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGA-GAGATAAGA
91002253 CTTTATCTTC
Statistics
Matches: 242, Mismatches: 38, Indels: 43
0.75 0.12 0.13
Matches are distributed among these distances:
84 20 0.08
85 37 0.15
86 3 0.01
87 2 0.01
88 5 0.02
89 36 0.15
90 4 0.02
91 33 0.14
92 34 0.14
93 7 0.03
94 3 0.01
95 12 0.05
96 46 0.19
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (93 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTTAATTTATAGCTTTAATCTGTTCCACTGCAA
CTTCAGGGAATAAGATTCGCTATCTTAA
Found at i:91002683 original size:100 final size:100
Alignment explanation
Indices: 91002510--91002809 Score: 555
Period size: 100 Copynumber: 3.0 Consensus size: 100
91002500 GAATCAAATG
*
91002510 CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGCAAAATGTCATAAGAATGATCCCTTC
1 CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGCAAAATGTCATGAGAATGATCCCTTC
91002575 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
66 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
*
91002610 CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGTAAAATGTCATGAGAATGATCCCTTC
1 CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGCAAAATGTCATGAGAATGATCCCTTC
*
91002675 TTAATGTTTGGGTTGTCATTACTTATTTTTCATCA
66 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
* *
91002710 CTCCTAACTAGATGTGTATGAATGTTATTTGTATGAATGCAAAATGTCATGAAAATGATCCCTTC
1 CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGCAAAATGTCATGAGAATGATCCCTTC
91002775 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
66 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
91002810 AGGTTGTATC
Statistics
Matches: 193, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 193 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (100 bp):
CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGCAAAATGTCATGAGAATGATCCCTTC
TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
Found at i:91003168 original size:65 final size:65
Alignment explanation
Indices: 91003084--91003208 Score: 196
Period size: 65 Copynumber: 1.9 Consensus size: 65
91003074 GGACAAAAAA
* * *
91003084 GAAATTGATTGGGATCATAGCTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAAGAAG
1 GAAATTGATTGGGAGCATAGCTCAAAATGAATAAAGTAATCAAAGATAGCAAATGCAATAAGAAG
* * *
91003149 GAAATTGATTGGGAGCATAGCTCAAAATGAATACAGTAATCAAGGATAGCAAATTCAATA
1 GAAATTGATTGGGAGCATAGCTCAAAATGAATAAAGTAATCAAAGATAGCAAATGCAATA
91003209 TGGGTAAGAT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.23
Consensus pattern (65 bp):
GAAATTGATTGGGAGCATAGCTCAAAATGAATAAAGTAATCAAAGATAGCAAATGCAATAAGAAG
Found at i:91018253 original size:7 final size:7
Alignment explanation
Indices: 91018222--91018269 Score: 57
Period size: 7 Copynumber: 7.3 Consensus size: 7
91018212 AATTGAAAAA
91018222 AATAAAT
1 AATAAAT
*
91018229 AA-AGAT
1 AATAAAT
*
91018235 AA-AAGT
1 AATAAAT
91018241 AA-AAAT
1 AATAAAT
91018247 AATAAAT
1 AATAAAT
91018254 AATAAAT
1 AATAAAT
91018261 AATAAAT
1 AATAAAT
91018268 AA
1 AA
91018270 AAGTCTTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
6 14 0.39
7 22 0.61
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (7 bp):
AATAAAT
Found at i:91018262 original size:14 final size:13
Alignment explanation
Indices: 91018217--91018271 Score: 69
Period size: 12 Copynumber: 4.3 Consensus size: 13
91018207 AAAGTAATTG
91018217 AAAAA-AATAAAT
1 AAAAATAATAAAT
* *
91018229 AAAGATAA-AAGT
1 AAAAATAATAAAT
91018241 AAAAATAATAAAT
1 AAAAATAATAAAT
91018254 AATAAATAATAAAT
1 AA-AAATAATAAAT
91018268 AAAA
1 AAAA
91018272 GTCTTCAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
12 14 0.39
13 9 0.25
14 13 0.36
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (13 bp):
AAAAATAATAAAT
Found at i:91023966 original size:17 final size:17
Alignment explanation
Indices: 91023944--91023982 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
91023934 CTAGGTTGAT
91023944 TAATTGAAATCTCTTTC
1 TAATTGAAATCTCTTTC
91023961 TAATTGAAATCTCTTTC
1 TAATTGAAATCTCTTTC
91023978 TAATT
1 TAATT
91023983 AAAACCCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.31, C:0.15, G:0.05, T:0.49
Consensus pattern (17 bp):
TAATTGAAATCTCTTTC
Found at i:91027755 original size:11 final size:10
Alignment explanation
Indices: 91027739--91027814 Score: 63
Period size: 9 Copynumber: 7.9 Consensus size: 10
91027729 AAAGAATAAC
91027739 AATAATACAAT
1 AATAATA-AAT
91027750 AATAATAAAGT
1 AATAATAAA-T
*
91027761 AGTAATAAA-
1 AATAATAAAT
91027770 AATAA-AAAT
1 AATAATAAAT
*
91027779 AACAAT-AAT
1 AATAATAAAT
*
91027788 AGTAA-AAAT
1 AATAATAAAT
91027797 -ATAATAAAT
1 AATAATAAAT
*
91027806 AATAGTAAA
1 AATAATAAA
91027815 AGAAAATAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
8 6 0.12
9 21 0.40
10 9 0.17
11 16 0.31
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.25
Consensus pattern (10 bp):
AATAATAAAT
Found at i:91027829 original size:24 final size:23
Alignment explanation
Indices: 91027750--91027829 Score: 76
Period size: 23 Copynumber: 3.5 Consensus size: 23
91027740 ATAATACAAT
* * *
91027750 AATAATAAAGTAGTAATAAAAATA
1 AATAATAAAATAATAGTAAAAA-A
91027774 AA-AATAACAATAATAGT-AAAAA
1 AATAATAA-AATAATAGTAAAAAA
*
91027796 TATAAT-AAATAATAGTAAAAGAA
1 AATAATAAAATAATAGTAAAA-AA
91027819 AATAATAAAAT
1 AATAATAAAAT
91027830 TTAATAATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
21 9 0.20
22 6 0.13
23 19 0.41
24 12 0.26
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.24
Consensus pattern (23 bp):
AATAATAAAATAATAGTAAAAAA
Found at i:91031505 original size:7 final size:8
Alignment explanation
Indices: 91031488--91031512 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
91031478 CAATCGAATG
91031488 AAATAAAA
1 AAATAAAA
91031496 AAATAAAA
1 AAATAAAA
91031504 AAATAAAA
1 AAATAAAA
91031512 A
1 A
91031513 TAGTCTGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAATAAAA
Found at i:91034583 original size:28 final size:27
Alignment explanation
Indices: 91034529--91034583 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
91034519 ATTAATCTCT
** **
91034529 AAAAATCTCTCCAAAAACCCTTTCTTC
1 AAAAATCTCTCCAAAAAAACTAGCTTC
91034556 AAAAATCCTCTCCAAAAAAACTAGCTTC
1 AAAAAT-CTCTCCAAAAAAACTAGCTTC
91034584 TTAAAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.42, C:0.31, G:0.02, T:0.25
Consensus pattern (27 bp):
AAAAATCTCTCCAAAAAAACTAGCTTC
Found at i:91034742 original size:13 final size:13
Alignment explanation
Indices: 91034721--91034783 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
91034711 GATGGAGTTG
*
91034721 GTGGAGTGGGTTA
1 GTGGGGTGGGTTA
*
91034734 GTGGGGTGGTTTA
1 GTGGGGTGGGTTA
91034747 GTGGGGTGTTGGAGTTA
1 GT-GGG-G-TGG-GTTA
**
91034764 GTGGGGTGATTTA
1 GTGGGGTGGGTTA
91034777 GTGGGGT
1 GTGGGGT
91034784 AGTTGTGATT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
13 23 0.56
14 5 0.12
15 2 0.05
16 6 0.15
17 5 0.12
ACGTcount: A:0.11, C:0.00, G:0.54, T:0.35
Consensus pattern (13 bp):
GTGGGGTGGGTTA
Found at i:91034764 original size:30 final size:32
Alignment explanation
Indices: 91034730--91034864 Score: 165
Period size: 30 Copynumber: 4.4 Consensus size: 32
91034720 GGTGGAGTGG
*
91034730 GTTAGTGGGGTGGTTTAGTGGGGT-GTTG-GA
1 GTTAGTGGGGTGATTTAGTGGGGTAGTTGTGA
91034760 GTTAGTGGGGTGATTTAGTGGGGTAGTTGTGA
1 GTTAGTGGGGTGATTTAGTGGGGTAGTTGTGA
* *
91034792 TTTAGT--GGTCGGTTTAGTGGGGT-GTTG-GA
1 GTTAGTGGGGT-GATTTAGTGGGGTAGTTGTGA
*
91034821 GTTAGTGGGGTGATTTAGTGGGGTGGTTGTGA
1 GTTAGTGGGGTGATTTAGTGGGGTAGTTGTGA
* *
91034853 TTTAGTAGGGTG
1 GTTAGTGGGGTG
91034865 TTGGAGTTAG
Statistics
Matches: 91, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
29 7 0.08
30 42 0.46
31 23 0.25
32 19 0.21
ACGTcount: A:0.13, C:0.01, G:0.48, T:0.39
Consensus pattern (32 bp):
GTTAGTGGGGTGATTTAGTGGGGTAGTTGTGA
Found at i:91034766 original size:17 final size:17
Alignment explanation
Indices: 91034743--91034879 Score: 102
Period size: 17 Copynumber: 8.6 Consensus size: 17
91034733 AGTGGGGTGG
91034743 TTTAGTGGGGTGTTGGA
1 TTTAGTGGGGTGTTGGA
*
91034760 GTTAGT-GGG-G-T-GA
1 TTTAGTGGGGTGTTGGA
91034773 TTTAGTGGGGTAGTTGTGA
1 TTTAGTGGGGT-GTTG-GA
*
91034792 TTTAGT---G-GTCGG-
1 TTTAGTGGGGTGTTGGA
91034804 TTTAGTGGGGTGTTGGA
1 TTTAGTGGGGTGTTGGA
*
91034821 GTTAGT-GGG-G-T-GA
1 TTTAGTGGGGTGTTGGA
91034834 TTTAGTGGGGTGGTTGTGA
1 TTTAGTGGGGT-GTTG-GA
*
91034853 TTTAGTAGGGTGTTGGA
1 TTTAGTGGGGTGTTGGA
*
91034870 GTTAGTGGGG
1 TTTAGTGGGG
91034880 CGGTTTGGGT
Statistics
Matches: 94, Mismatches: 9, Indels: 34
0.69 0.07 0.25
Matches are distributed among these distances:
12 6 0.06
13 15 0.16
14 11 0.12
15 3 0.03
16 13 0.14
17 22 0.23
18 4 0.04
19 20 0.21
ACGTcount: A:0.13, C:0.01, G:0.47, T:0.39
Consensus pattern (17 bp):
TTTAGTGGGGTGTTGGA
Found at i:91034812 original size:61 final size:61
Alignment explanation
Indices: 91034741--91034858 Score: 227
Period size: 61 Copynumber: 1.9 Consensus size: 61
91034731 TTAGTGGGGT
91034741 GGTTTAGTGGGGTGTTGGAGTTAGTGGGGTGATTTAGTGGGGTAGTTGTGATTTAGTGGTC
1 GGTTTAGTGGGGTGTTGGAGTTAGTGGGGTGATTTAGTGGGGTAGTTGTGATTTAGTGGTC
*
91034802 GGTTTAGTGGGGTGTTGGAGTTAGTGGGGTGATTTAGTGGGGTGGTTGTGATTTAGT
1 GGTTTAGTGGGGTGTTGGAGTTAGTGGGGTGATTTAGTGGGGTAGTTGTGATTTAGT
91034859 AGGGTGTTGG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.13, C:0.01, G:0.47, T:0.40
Consensus pattern (61 bp):
GGTTTAGTGGGGTGTTGGAGTTAGTGGGGTGATTTAGTGGGGTAGTTGTGATTTAGTGGTC
Found at i:91034854 original size:19 final size:19
Alignment explanation
Indices: 91034830--91034884 Score: 69
Period size: 19 Copynumber: 3.0 Consensus size: 19
91034820 AGTTAGTGGG
91034830 GTGATTTAGTGGGGTGGTT
1 GTGATTTAGTGGGGTGGTT
*
91034849 GTGATTTAGTAGGGT-GTT
1 GTGATTTAGTGGGGTGGTT
* *
91034867 G-GAGTTAGTGGGGCGGTT
1 GTGATTTAGTGGGGTGGTT
91034885 TGGGTATGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 10 0.32
18 7 0.23
19 14 0.45
ACGTcount: A:0.13, C:0.02, G:0.47, T:0.38
Consensus pattern (19 bp):
GTGATTTAGTGGGGTGGTT
Found at i:91035681 original size:93 final size:90
Alignment explanation
Indices: 91035458--91035976 Score: 382
Period size: 87 Copynumber: 5.8 Consensus size: 90
91035448 ATTAGACATT
* * ** ** * *
91035458 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTTGCAATATGAG
1 AAAAACA-TAATTGAAAATACCTCAGCGTGTGA-CTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
91035523 TTGA-TTTTT--AAAAAAAAATTTGTAA
64 TTGATTTTTTGCAAACATAAA-TTGAAA
* * * ** * * *
91035548 AATAA-AT-TTTGAAAATACCTCGGTATGTGACCCGGGGCTCAACTCACCTCTCGTAATATGAGT
1 AAAAACATAATTGAAAATACCTCAGCGTGTGA-CTGAGGCTCAACTCACCTCTCGCAATATGAGT
91035611 TGA-TTTTTGCAAAGCATAAATTGAAAA
65 TGATTTTTTGCAAA-CATAAATTG-AAA
91035638 AAAAACATCAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAT-AATTGAAAATACCTCAGCGTGTGA-CTGAGGCTCAACTCACCTCTCGCAATATGAG
91035703 TTGATTTTTTTGACAAACATAAATTGAAA
64 TTGA-TTTTTTG-CAAACATAAATTGAAA
* *
91035732 AAAAAGA-AATTGAAAATACCTCAGCGTGT--CT----CTGAACTCACCTCTCGCAATATGAGTT
1 AAAAACATAATTGAAAATACCTCAGCGTGTGACTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
91035790 GATTTTTTTGGAAAAACATAATTTG---
66 GA-TTTTTT-G-CAAACATAAATTGAAA
* * * *
91035815 AAAAACATAATTTGAAAATACCTCAGCGTATGAGTCAAGGCTCAACTCACCACTCGCAATATGAG
1 AAAAACATAA-TTGAAAATACCTCAGCGTGTGACT-GAGGCTCAACTCACCTCTCGCAATATGAG
* * *
91035880 CTAT-TTTTTTTGAAACACAGAAATTG-AA
64 -T-TGATTTTTTGCAA-ACATAAATTGAAA
* * * * * *
91035908 TAACAGA-AATGGAAAACACCTCA--GTGT--CTTGAGGTTCAACTCACCTCTCGCAATATGAGT
1 AAAAACATAATTGAAAATACCTCAGCGTGTGAC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
91035968 TGATTTTTT
65 TGATTTTTT
91035977 TTTGAAAGAC
Statistics
Matches: 355, Mismatches: 47, Indels: 58
0.77 0.10 0.13
Matches are distributed among these distances:
83 6 0.02
84 2 0.01
85 55 0.15
86 20 0.06
87 80 0.23
88 1 0.00
89 12 0.03
90 17 0.05
91 23 0.06
92 53 0.15
93 57 0.16
94 10 0.03
95 15 0.04
96 4 0.01
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (90 bp):
AAAAACATAATTGAAAATACCTCAGCGTGTGACTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTGCAAACATAAATTGAAA
Found at i:91035832 original size:13 final size:14
Alignment explanation
Indices: 91035800--91035832 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
91035790 GATTTTTTTG
91035800 GAAAAACATAATTT
1 GAAAAACATAATTT
91035814 GAAAAACATAATTT
1 GAAAAACATAATTT
91035828 GAAAA
1 GAAAA
91035833 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.61, C:0.06, G:0.09, T:0.24
Consensus pattern (14 bp):
GAAAAACATAATTT
Found at i:91035858 original size:177 final size:175
Alignment explanation
Indices: 91035588--91035977 Score: 447
Period size: 177 Copynumber: 2.2 Consensus size: 175
91035578 CCCGGGGCTC
* * *
91035588 AACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATTGAAAAAAAAACATCAATT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTG---AAAAAACATCAATT
* * * *
91035651 GAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG
63 GAAAATACCTCAGCGTATGACCTAAGGCTCAACTCACCACTCGCAATATGAGCT-ATTTTTTTTG
* * *
91035715 ACAA-ACATAAATTGAAAAAAAAGAAATTGAAAATACCTCAGCGTGTCTCT-G-
127 A-AACACAGAAATTG-AAAAAAAGAAATGGAAAACACCTCA--GTGTCT-TGGT
*
91035766 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACATAATTTG-AAAAACAT-AATTTG
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTT-GAAAAACATAAATTGAAAAAACATCAA-TTG
*
91035829 AAAATACCTCAGCGTATGA-GTCAAGGCTCAACTCACCACTCGCAATATGAGCTATTTTTTTTGA
64 AAAATACCTCAGCGTATGACCT-AAGGCTCAACTCACCACTCGCAATATGAGCTATTTTTTTTGA
* *
91035893 AACACAGAAATTGAATAACAGAAATGGAAAACACCTCAGTGTCTTGAGGTT
128 AACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGTGTCTT--GG-T
91035944 CAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 -AACTCACCTCTCGCAATATGAGTTGATTTTTTT
91035978 TTGAAAGACA
Statistics
Matches: 185, Mismatches: 14, Indels: 25
0.83 0.06 0.11
Matches are distributed among these distances:
173 1 0.01
174 6 0.03
176 28 0.15
177 75 0.41
178 25 0.14
179 33 0.18
180 5 0.03
181 12 0.06
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (175 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAAACATCAATTGAA
AATACCTCAGCGTATGACCTAAGGCTCAACTCACCACTCGCAATATGAGCTATTTTTTTTGAAAC
ACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGTGTCTTGGT
Found at i:91035888 original size:92 final size:88
Alignment explanation
Indices: 91035583--91035994 Score: 329
Period size: 85 Copynumber: 4.6 Consensus size: 88
91035573 TGTGACCCGG
* * * *
91035583 GGCTCAACTCACCTCTCGTAATATGAGTTGA---TTTTTGCAAAGCATAAATTGAAAAAAAAACA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTG----AAAAACA
** * * * *
91035645 TCAATTGAAAATACCTCAGCGTGTGACCTGA
62 GAAATGGAAAACACCTCAGC--GT-A-TTAA
* * *
91035676 GGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGACAAACATAAATTGAAAAAAAAGAA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTG-AAAAACAGAA
* * *
91035740 ATTGAAAATACCTCAGCGTGTCT--
65 ATGGAAAACACCTCAGCGTAT-TAA
* * * * * *
91035763 --CTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACATAATTTGAAAAACATAAT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAAACAGAAA
* *
91035826 TTGAAAATACCTCAGCGTATGAGTCAA
66 TGGAAAACACCTCAGCGTAT---T-AA
* * * *
91035853 GGCTCAACTCACCACTCGCAATATGAGCT-ATTTTTTTTGAAACACAGAAATTGAATAACAGAAA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAAACAGAAA
* * *
91035917 TGGAAAACACCTCAGTGTCTTGA
66 TGGAAAACACCTCAGCGTATTAA
* *
91035940 GGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTG
1 GGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAAACAGAAATTG
91035995 GAAATACCTC
Statistics
Matches: 269, Mismatches: 37, Indels: 30
0.80 0.11 0.09
Matches are distributed among these distances:
85 55 0.20
86 19 0.07
87 28 0.10
88 2 0.01
89 23 0.09
90 2 0.01
91 44 0.16
92 49 0.18
93 30 0.11
95 17 0.06
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (88 bp):
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAAACAGAAA
TGGAAAACACCTCAGCGTATTAA
Found at i:91036090 original size:69 final size:67
Alignment explanation
Indices: 91035925--91036198 Score: 281
Period size: 69 Copynumber: 3.9 Consensus size: 67
91035915 AATGGAAAAC
*
91035925 ACCTCAG-TGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAG
1 ACCTCAGATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAA-AC--
91035989 AAATTGGAAAT
60 --ATT-GAAAT
91036000 ACCTCA-ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACATT
1 ACCTCAGA--TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACATT
91036063 GAAATT
63 GAAA-T
* *
91036069 ACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTTTGATGATAA-A
1 ACCTCAG-ATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA--A-AACA
91036133 TTGAAAAT
61 TTG-AAAT
*
91036141 ACCTCA-ATGTAACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGAAAA
1 ACCTCAGATGT--CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA
91036199 ATAAATTAAA
Statistics
Matches: 178, Mismatches: 7, Indels: 36
0.81 0.03 0.16
Matches are distributed among these distances:
67 2 0.01
68 5 0.03
69 47 0.26
70 11 0.06
71 8 0.04
72 45 0.25
73 14 0.08
74 2 0.01
75 6 0.03
77 38 0.21
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (67 bp):
ACCTCAGATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATTGAA
AT
Done.