Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 277 of 311
Found at i:91036181 original size:72 final size:68
Alignment explanation
Indices: 91035914--91036193 Score: 312
Period size: 72 Copynumber: 3.9 Consensus size: 68
91035904 TGAATAACAG
* * * *
91035914 AAATGGAAAACACCTCAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
1 AAATTGAAAATACCTCAATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTT
91035979 TGAAAGACA
64 TG--AG--A
*
91035988 GAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
1 -AAATTGAAAATACCTCAA--TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
91036051 TTGACA
63 TTGAGA
* * *
91036057 AACATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTT
1 AA-ATTGAAAATACCTCA--ATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91036122 TTGATGA
63 TTGA-GA
*
91036129 TAAATTGAAAATACCTCAATGTAACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTT
1 -AAATTGAAAATACCTCAATGT--CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91036194 GAAAAATAAA
Statistics
Matches: 179, Mismatches: 15, Indels: 25
0.82 0.07 0.11
Matches are distributed among these distances:
68 2 0.01
69 51 0.28
70 4 0.02
71 9 0.05
72 53 0.30
73 8 0.04
75 14 0.08
77 38 0.21
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (68 bp):
AAATTGAAAATACCTCAATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
AGA
Found at i:91036182 original size:141 final size:142
Alignment explanation
Indices: 91035925--91036195 Score: 395
Period size: 141 Copynumber: 1.9 Consensus size: 142
91035915 AATGGAAAAC
* * *
91035925 ACCTCAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGA
1 ACCTCAGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGACTTGA-TTTTTTTTGAAAGA-AGA
* **
91035990 AATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
64 AATTGAAAATACCTCAACGTAACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
91036055 CAAACATTGAAATT
129 CAAACATTGAAATT
* *
91036069 ACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGACTTGA-TTTTTTTG-ATG-ATA
1 ACCTCAG--TGTCCTGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTTTTGAAAGAAGA
* *
91036131 AATTGAAAATACCTCAATGTAACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGA
64 AATTGAAAATACCTCAACGTAACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
91036196 AAAATAAATT
Statistics
Matches: 115, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
141 62 0.54
143 2 0.02
144 15 0.13
146 36 0.31
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (142 bp):
ACCTCAGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTTTTGAAAGAAGAAA
TTGAAAATACCTCAACGTAACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
AACATTGAAATT
Found at i:91036372 original size:73 final size:73
Alignment explanation
Indices: 91036206--91036369 Score: 249
Period size: 73 Copynumber: 2.2 Consensus size: 73
91036196 AAAATAAATT
* *
91036206 AAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGT
1 AAAA-ACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGT
91036271 TGATTTTTG
65 TGATTTTTG
* * *
91036280 AAAAATAGAAATTGAAAATACGTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTT
91036345 GA-TTTTG
66 GATTTTTG
**
91036352 ACGAACAGAAATTGAAAA
1 AAAAACAGAAATTGAAAA
91036370 ATAGAAATTG
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
72 20 0.24
73 58 0.71
74 4 0.05
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (73 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTT
GATTTTTG
Found at i:91036424 original size:86 final size:84
Alignment explanation
Indices: 91036277--91036522 Score: 316
Period size: 86 Copynumber: 2.9 Consensus size: 84
91036267 GAGTTGATTT
* *
91036277 TTGAAAAATAGAAATTGAAAATACGTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
91036342 GTTGATTTTGACGAACAGAAA
66 GTTGATTTTGA--AAAAGAAA
*
91036363 TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG-
1 TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
* * *
91036427 GTTGGTTTTTGAAAAATAAT
66 GTT-GATTTTGAAAAAGAAA
* ** * *
91036447 TTAAAAAATAGATTTTGAAAATACCTC-GACATGTAACCCGAGGCTCAACTCACCTCTTGCAATA
1 TTGAAAAATAGAAATTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATA
91036511 TGAGTTGATTTT
63 TGAGTTGATTTT
91036523 TTTGAAACAT
Statistics
Matches: 141, Mismatches: 14, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
83 1 0.01
84 33 0.23
85 3 0.02
86 101 0.72
87 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (84 bp):
TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTGAAAAAGAAA
Found at i:91036673 original size:162 final size:161
Alignment explanation
Indices: 91036363--91036914 Score: 589
Period size: 162 Copynumber: 3.4 Consensus size: 161
91036353 CGAACAGAAA
* * *
91036363 TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG-
1 TTGAAAGACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * * *
91036427 GTTGGTTTTTGAAAAATAATTTAAAAA-ATAGATTTTGAAAATACCTC-GACATGTAACCCGAGG
66 GTTGTTTTTTGAAAAATAATTGAAAAACAGA-AATTT-AAAATACCTCAG-CACGTGACCCGAGG
*
91036490 CTCAACTCACCTCTTGCAATATGAGTTGATTTTT
128 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * * * *
91036524 TTG-AA-ACATAGATCGAAAATACCTTAGCATGACCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91036587 GTTGATTTTTTGAAAACATGAATTGAAAAACAGAAATTTAAAATACCTCAGCACGTGAGCCGAGG
66 GTTG-TTTTTTGAAAA-AT-AATTGAAAAACAGAAATTTAAAATACCTCAGCACGTGACCCGAGG
*
91036652 CTCAACTCACCTCTCGCAATATGACTTGATTTTTT
128 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* ** *
91036687 TTGAAAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *** ** * * * **
91036752 GTTGGTTTTTTTAATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCA--ACGTGTCTTGAGGC
66 GTT-GTTTTTTGAA-AAATAATTGAAAAACAGAAATTTAAAATACCTCAGCACGTGACCCGAGGC
91036815 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
129 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
*** * * * *
91036848 AAAAAAAAACAGAAAT-TAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATGT
1 -TTGAAAGACAGAAATCGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
91036912 GAG
64 GAG
91036915 CAGAAATTGA
Statistics
Matches: 328, Mismatches: 50, Indels: 25
0.81 0.12 0.06
Matches are distributed among these distances:
159 49 0.15
160 6 0.02
161 22 0.07
162 138 0.42
163 22 0.07
164 30 0.09
165 60 0.18
166 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (161 bp):
TTGAAAGACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGTTTTTTGAAAAATAATTGAAAAACAGAAATTTAAAATACCTCAGCACGTGACCCGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTT
Found at i:91036749 original size:76 final size:76
Alignment explanation
Indices: 91036609--91036914 Score: 337
Period size: 76 Copynumber: 3.9 Consensus size: 76
91036599 AAAACATGAA
* * * *
91036609 TTGAAAAACAGAAATTTAAAATACCTCAGCACGTGAGC-CGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAGACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCACCTCTCGCAATA
*
91036673 TGACTTGATTTTTT
63 TGAGTTGATTTTTT
*
91036687 TTGAAAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
91036752 GTTGGTTTTTTTAATTTTTTT
66 GTT-G--------A-TTTTTT
91036773 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
91036838 GTTGATTTTTA
66 GTTGATTTTTT
*** * * * * *
91036849 AAAAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATGTG
1 TTGAAAGACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
91036913 AG
65 AG
91036915 CAGAAATTGA
Statistics
Matches: 200, Mismatches: 16, Indels: 26
0.83 0.07 0.11
Matches are distributed among these distances:
75 5 0.03
76 92 0.46
77 2 0.01
78 26 0.13
85 2 0.01
86 73 0.37
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (76 bp):
TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTT
Found at i:91036780 original size:86 final size:86
Alignment explanation
Indices: 91036681--91036847 Score: 316
Period size: 86 Copynumber: 1.9 Consensus size: 86
91036671 TATGACTTGA
*
91036681 TTTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCA
1 TTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
*
91036746 ATATGAGTTGGTTTTTTTAAT
66 ATATGAGTTGATTTTTTTAAT
91036767 TTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
1 TTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
91036832 ATATGAGTTGATTTTT
66 ATATGAGTTGATTTTT
91036848 AAAAAAAAAC
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 79 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.37
Consensus pattern (86 bp):
TTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTAAT
Found at i:91036836 original size:410 final size:402
Alignment explanation
Indices: 91036084--91037990 Score: 1020
Period size: 410 Copynumber: 4.9 Consensus size: 402
91036074 AGCATGTCCT
** *
91036084 GAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTTTGATGATAAATTGAAAATACCTCAAT
1 GAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTTTGAACATAAATCGAAAATACCTCAAT
* * *
91036149 GTAACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAATAAATTAAAACACA
66 G-AACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACA
* * *
91036214 AAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
130 AAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATATGACTTGATTTTT
* * *
91036279 GAAAAATAGAAATTGAAAATACGTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGT
195 GAAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGT
* *
91036344 TGATTTTGACGAACAGAAATTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAA
260 TGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAA
* *
91036409 CTCACCTCTCGCAATATG-GTTGGTTTTTGAAAAATAATTTAAAAAATAGATTTTGAAAATACCT
325 CTCACCTCTCGCAATATGAGTTGATTTTTAAAAAATAATTTAAAAAATAGATTTTGAAAATACCT
91036473 CGACATGTAACCC
390 CGACATGTAACCC
* * * *
91036486 GAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAACATAGATCGAAAATACCTTAG
1 GAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTTTG-AACATAAATCGAAAATACCTCA-
*
91036551 CATG-ACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATGAATTGAAA
64 -ATGAACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA-ATAAATT-AAA
* * * *
91036615 A-ACAGAAATTTAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGACTT
125 ACACAAAAATTGAAAATACCTCAG--CGTGACCCGAGGCTCAACTCACCTCTCACAATATGACTT
* * ** *
91036679 GATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCG
188 GA---TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCA
* *** ****** *
91036744 CAATATGAGTTGGTTTT-TTTAATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTC
250 CAATATGAGTTGATTTTGACGAA-CAGAAATTGAAAAACAGAAATTGAAAATACCTCAACGTGTC
* * *
91036808 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAAAA-AA---AACAGA-A-A--T
314 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAATAATTTAAAAAATAGATTT
* *
91036864 T-AAAATTACCTC-AGCGTGT--CCT
379 TGAAAA-TACCTCGA-CATGTAACCC
* * *
91036886 GAGGCTCAACTCACCTCTCAC-A-ATG---TGA-------G--CAGAAATTGAAAATACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTTTGAACATAAATCGAAAATACCTCAA-
* * * * * **
91036937 GTG-TCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTT------T---TT--GA-TG
65 -TGAACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACAC
* *** *** * * *
91036988 ATAAATTGAAAATACCTCAATATGACTTAAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTT
129 AAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATATGACTTGATTTT
* * * *
91037053 TGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
194 TG-----------AAAA-ACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTC
* * *
91037118 TCGCAATATGAGTTGA-TTT------------TTGAAAAACAGAAATTGAAAATACCTTAGCGTG
247 TCACAATATGAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAACGTG
* * *
91037170 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-CA--T---AAATTGA-
312 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAATAATTTAAAAAATAGAT
*** * *
91037228 ACAG-AAATACCTCAACATG---CCTT
377 TTTGAAAATACCTCGACATGTAACC-C
* * * * * ***
91037251 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTATGCACAGAAATTGAAGA-ACAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGACTTGA-TTTTTT-TGAACATAAATCGAAAATACCTCA
* *
91037315 ATTGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTAATTTTT-----
64 A-TG---A-ACCT-A--------AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
* * * * * * ** *
91037375 -T--TTTGAAATACAGAAATTGGAAATACCTC-GACGTGTCTTGAGGCTCAACTCACCTCTCGCA
115 ATAAATTAAAACACAAAAATTGAAAATACCTCAG-CGTGACCCGAGGCTCAACTCACCTCTCACA
* * * * *
91037436 ATATGAGTTGATTTTTGAAAAACA-AACATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTGA
179 ATATGACTTGATTTTTGAAAAACAGAA-ATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCA
91037500 CCTCTCACAATATGAGTTGACTTTT------------TTGAAAAACAGAAATTGAAAATACCTCC
243 CCTCTCACAATATGAGTTGA-TTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCT-C
* **
91037553 ACATGTGAAAC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT------T--TTT--A
306 A-ACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAATAATTTAAA
** * * **
91037606 TGATA-A-ATTGAAAATACCTC-A-ATGTGACTT
369 AAATAGATTTTGAAAATACCTCGACATGTAACCC
* * * *
91037636 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTG
1 GAGGCTCAACTCACCTCTCGCAATATGACTTGA-TTTT------T---TT--GA-ACATAAATCG
* * * *
91037701 ACAATACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-----
53 AAAATACCTCA--ATGAACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
* * *
91037760 ------AAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
116 TAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAAT
* * ** * * * **
91037818 ATGAGTCGA-TTTTGACGAACAGAAATTGAAAATACCTTAGCGTATCTTGAGGCTCAACTCACCT
181 ATGACTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCT
* * * * * **
91037882 CTCGCAATATGAGTTGGTTTTTGA-AAAC-TAATTTGAAAAACAGATTTTGAAAATACCTCGACA
246 CTCACAATATGAGTT-GATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTC-A-A
* * *
91037945 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
308 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91037991 TTTAAACATA
Statistics
Matches: 1228, Mismatches: 158, Indels: 250
0.75 0.10 0.15
Matches are distributed among these distances:
363 2 0.00
364 73 0.06
365 43 0.04
366 5 0.00
367 3 0.00
368 33 0.03
370 21 0.02
373 2 0.00
376 7 0.01
377 55 0.04
379 66 0.05
380 64 0.05
381 16 0.01
383 8 0.01
384 42 0.03
385 103 0.08
386 55 0.04
387 4 0.00
388 33 0.03
389 69 0.06
390 40 0.03
391 2 0.00
393 33 0.03
394 6 0.00
395 5 0.00
396 11 0.01
397 4 0.00
398 63 0.05
399 1 0.00
400 21 0.02
401 5 0.00
402 51 0.04
403 51 0.04
404 11 0.01
405 29 0.02
406 8 0.01
407 37 0.03
409 4 0.00
410 133 0.11
411 9 0.01
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (402 bp):
GAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTTTGAACATAAATCGAAAATACCTCAAT
GAACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAA
AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATATGACTTGATTTTTG
AAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTT
GATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTAAAAAATAATTTAAAAAATAGATTTTGAAAATACCTC
GACATGTAACCC
Found at i:91036947 original size:58 final size:58
Alignment explanation
Indices: 91036857--91036967 Score: 179
Period size: 58 Copynumber: 1.9 Consensus size: 58
91036847 TAAAAAAAAA
*
91036857 CAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATGTGAG
1 CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATGTGAG
* *
91036915 CAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
1 CAGAAATT-AAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAAT
91036968 ATAAGTTGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
58 45 0.92
59 4 0.08
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (58 bp):
CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATGTGAG
Found at i:91037035 original size:72 final size:72
Alignment explanation
Indices: 91036918--91037053 Score: 218
Period size: 72 Copynumber: 1.9 Consensus size: 72
91036908 ATGTGAGCAG
* * *
91036918 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
1 AAATTGAAAATACCTCAACATGACTTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
91036983 TGATGAT
66 TGATGAT
* * *
91036990 AAATTGAAAATACCTCAATATGACTTAAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTT
1 AAATTGAAAATACCTCAACATGACTTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
91037054 GAAAAATAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 58 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (72 bp):
AAATTGAAAATACCTCAACATGACTTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
TGATGAT
Found at i:91037282 original size:77 final size:73
Alignment explanation
Indices: 91037066--91037679 Score: 558
Period size: 73 Copynumber: 8.1 Consensus size: 73
91037056 AAAATAAATT
* * **
91037066 AAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAA-ACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
91037131 TGATTTTTG
65 TGATTTTTG
*
91037140 AAAAACAGAAATTGAAAATACCTTAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
91037204 TGATTTTTG
65 TGATTTTTG
* * *
91037213 AAAAACATAAATTGAACAGAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCGCAATATG
1 AAAAACAGAAATTG---A-AAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATG
*
91037278 AGTTGATTTTTTT
62 AGTTGA-TTTTTG
*** *** * *
91037291 ATGCACAGAAATTGAAGAACAGAAATTGAAAACA-CCTCAGCGTCTTGAGGTTCAACTCACCTCT
1 AAAAACAGAAATT---G---A-AAA-T-ACCTCAGCGT--GC--CTTGAGGCTCAACTCACCTCT
*
91037355 CGCAATATGAGTTAATTTTTTTTTG
53 CGCAATATGAGTTGA----TTTTTG
* * *
91037380 AAATACAGAAATTGGAAATACCTC-GACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAG-CGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
91037444 TGATTTTTG
65 TGATTTTTG
* * *
91037453 AAAAACA-AACATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTGACCTCTCACAATATGAG
1 AAAAACAGAA-ATTGAAAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAG
91037516 TTGACTTTTTTG
64 TTGA--TTTTTG
****
91037528 AAAAACAGAAATTGAAAATACCTCCA-CATGTGAAACGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCT-CAGC--GTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
91037592 GTTGATTTTT-
63 GTTGATTTTTG
*** ** * ** *
91037602 TTTATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
91037667 GATTTTTG
66 GATTTTTG
91037675 AAAAA
1 AAAAA
91037680 TAAATTAAAA
Statistics
Matches: 450, Mismatches: 57, Indels: 67
0.78 0.10 0.12
Matches are distributed among these distances:
72 44 0.10
73 138 0.31
74 25 0.06
75 31 0.07
76 7 0.02
77 114 0.25
78 14 0.03
79 1 0.00
80 2 0.00
81 12 0.03
82 6 0.01
83 3 0.01
84 2 0.00
86 35 0.08
89 16 0.04
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (73 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTG
Found at i:91037314 original size:14 final size:13
Alignment explanation
Indices: 91037295--91037324 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
91037285 TTTTTTATGC
91037295 ACAGAAATTGAAGA
1 ACAGAAATTGAA-A
91037309 ACAGAAATTGAAA
1 ACAGAAATTGAAA
91037322 ACA
1 ACA
91037325 CCTCAGCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.60, C:0.10, G:0.17, T:0.13
Consensus pattern (13 bp):
ACAGAAATTGAAA
Found at i:91037487 original size:313 final size:301
Alignment explanation
Indices: 91035903--91038474 Score: 1890
Period size: 313 Copynumber: 8.3 Consensus size: 301
91035893 AACACAGAAA
* * * * *
91035903 TTGAATAACAGAAATGGAAAACACCTCA--GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
91035966 GTTGATTTTTTTTTGAAAGACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
66 GTTGA---TTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCT
* *
91036031 CTCGCAATATGAGTTGA---TTTT-----T--G-ACA-AACATTGAAATTACCTCAGCATGTCCT
128 CTCGCAATATGAGTTGATTTTTTTAAAAATAAGAACAGAA-ATTGAAAATACCTCAGC-TGTCTT
* *
91036084 GAGGCTCAACTCACCTCTCGCAATATGACTTGA--TTTTTTTG-ATGA-TAAATTGAAAATACCT
191 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAT-ACAAAATTGAAAATACCT
** * * *
91036145 CAATGTAACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTT
255 CAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * * *
91036192 TTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCT
1 TTG-----------AAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
* * * * * **
91036257 CTCACAATATGAGTTGA-TTTTTGAAAAATAGAAATTGAAAATACGTCAGCGTGTCCCGAGGCTC
54 CTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTC
* *** * *
91036321 AACTCACCTCTCACAATATGAGTTGATTTTGACGAACAGAAATTGAAAAATAGAAATTGAAAATA
119 AACTCACCTCTCGCAATATGAGTTGATTTT--TTTA-A-AAA-T-AAGAACAGAAATTGAAAATA
* *
91036386 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG-GTTGGTTTTTGAAAAATAATTT-
178 CCTCAGC-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT------T--TTTG
* * * *
91036449 AA-AAAATAGATTTTGAAAATACCTC-GACATGTAACCCGAGGCTCAACTCACCTCTTGCAATAT
234 AATACAA-A-A--TTGAAAATACCTCAG-C--GTGACCTGAGGCTCAACTCACCTCTCGCAATAT
91036512 GAGTTGATTT
292 GAGTTGATTT
*** * * * * * * *
91036522 TTTTGAAACATAGATCGAAAATACCTTAGCATGACCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
91036587 GTTGATTTTTTGAAAACATGAATTGAAAAACAGAAATTTAAAATACCTCAGCACGTGAGC-CGAG
66 GTTGA---TTT-------T---TTGAAAAACAGAAATTGAAAATACCTCA--ACATG-TCTTGAG
* **
91036651 GCTCAACTCACCTCTCGCAATATGACTTGATTTTTTT--TGA-AAG-ACAGAAATTGAAAATACC
115 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATAAGAACAGAAATTGAAAATACC
91036712 TCAATG-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTAATTTTTTTTTG
180 TC-A-GCTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT-G--------ATTTTTTTTTG
* * * *
91036776 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
234 -AATACA-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
91036841 GATTT
297 GATTT
* *
91036846 TTAAAAAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCAC-A-
1 TT---GAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
*
91036908 AT--G-TGA------G-----CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACC
62 ATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACC
* * * ** *
91036959 TCTCGCAATATAAGTTGATTTTTTT---GAT--G---ATAAATTGAAAATACCTCAATATGACTT
127 TCTCGCAATATGAGTTGATTTTTTTAAAAATAAGAACAGAAATTGAAAATACCTC-AGCTGTCTT
* * ** *
91037016 AAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAAAAATAAATTAAAACACAAAAATTG
191 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT------T---TTTGAATAC-AAAATTG
* * *
91037081 ACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
246 AAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
91037137 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
91037202 GTTGA-TTTTTGAAAAACATAAATTGAACAGAAATACCTCAACATGCCTTGAGGCTCAACTCACC
66 GTTGATTTTTTGAAAAACAGAAATTG---A-AAATACCTCAACATGTCTTGAGGCTCAACTCACC
*
91037266 TCTCGCAATATGAGTTGATTTTTTTATGCACAGAAATTGAAGAACAGAAATTGAAAACACCTCAG
127 TCTCGCAATATGAGTTGA-TTTTTT-T--A-A-AAA-T-AAGAACAGAAATTGAAAATACCTCAG
* * *
91037331 C-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTGAAATACAGAAATTGG
184 CTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTG-AATACA-AAATTGA
* *
91037395 AAATACCTC-GACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
247 AAATACCTCAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
91037450 TTGAAAAACA-AACATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTGACCTCTCACAATATG
1 TTGAAAAACAGAA-ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* ***
91037514 AGTTGACTTTTTTGAAAAACAGAAATTGAAAATACCTCCACATGTGAAACGAGGCTCAACTCACC
65 AGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGT--CTTGAGGCTCAACTCACC
* * *
91037579 TCTCGCAATATGAGTTGATTTTTTT-----TATG---ATAAATTGAAAATACCTCAATG-TGACT
127 TCTCGCAATATGAGTTGATTTTTTTAAAAATAAGAACAGAAATTGAAAATACCTC-A-GCTGTCT
** *
91037635 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATT
190 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT------T---TTTGAATAC-AAAATT
* *
91037700 GACAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
245 GAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
91037757 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* ** * * * *
91037822 GTCGA--TTTTGACGAACAGAAATTGAAAATACCTTAGCGTATCTTGAGGCTCAACTCACCTCTC
66 GTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTC
* ** * **
91037885 GCAATATGAGTTGGTTTTTGAAAACTAATTTGAAAAACAGATTTTGAAAATACCTC-GACATGTG
131 GCAATATGAGTTGATTTTTTTAAA--AA--T-AAGAACAGAAATTGAAAATACCTCAG-C-TGT-
** * *
91037949 ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTT-AA-ACATAGATCGAAAAT
188 -CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAATACA-AAATTGAAAAT
* *
91038011 ACCTCAGCATGACCTGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
251 ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
* *
91038064 TGAAAACATGAATTGAGAAACAGAAATTTAAAATACCTCAGCACGTGAGCC-GAGGCTCAACTCA
1 T-------TG-A---A-AAACAGAAATTGAAAATACCTCAG--CGTG-TCCTGAGGCTCAACTCA
* *
91038128 CCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAG
51 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAG
* *
91038193 GTTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTAAAAA-AAAAACAGAAATT-AAAATTAC
115 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATAAGAACAGAAATTGAAAA-TAC
91038254 CTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTATG-AT---AA
179 CTCAGC-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT-TGAATACAAA
* ** *
91038315 ATTGAAAATACATCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
242 ATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * * * * *
91038375 TTGAAAAATAAATTAAAACACAAAAATTGACAATACTTCAGCATGCCCCGAGGCTCAACTCACCT
1 TTG-----------AAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
*
91038440 CTCGCAATATGAGTTTA-TTTTTGAAAAACAGAAAT
54 CTCGCAATATGAGTTGATTTTTTGAAAAACAGAAAT
91038475 AAAAATATCA
Statistics
Matches: 1851, Mismatches: 214, Indels: 418
0.75 0.09 0.17
Matches are distributed among these distances:
283 6 0.00
288 48 0.03
289 9 0.00
290 2 0.00
291 63 0.03
292 58 0.03
293 3 0.00
294 1 0.00
295 3 0.00
296 43 0.02
297 16 0.01
298 21 0.01
299 106 0.06
300 5 0.00
301 18 0.01
302 38 0.02
303 44 0.02
304 32 0.02
305 56 0.03
306 3 0.00
307 194 0.10
308 14 0.01
309 36 0.02
310 3 0.00
311 39 0.02
312 16 0.01
313 206 0.11
314 37 0.02
315 52 0.03
316 79 0.04
317 41 0.02
318 54 0.03
319 25 0.01
320 3 0.00
321 75 0.04
322 14 0.01
323 19 0.01
324 156 0.08
325 13 0.01
326 25 0.01
327 40 0.02
328 18 0.01
329 4 0.00
330 42 0.02
332 25 0.01
334 45 0.02
335 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (301 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTTTAAAAATAAGAACAGAAATTGAAAATACCTCAGCTGTCTTGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAATACAAAATTGAAAATACCTCAGCGT
GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
Found at i:91037700 original size:620 final size:615
Alignment explanation
Indices: 91035903--91038304 Score: 2300
Period size: 620 Copynumber: 3.9 Consensus size: 615
91035893 AACACAGAAA
* * * * * *
91035903 TTGAATAACAGAAATGGAAAACACCTCA--GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
91035966 GTTGATTTTTTTTTGAAAGACAGAAATTG----GAAATACCTCAACGTGTCTTGAGGCTCAACTC
66 GTTGA----TTTTTGAAAAACATAAATTGAACAGAAATACCTCAACGTGCCTTGAGGCTCAACTC
* *
91036027 ACCTCTCGCAATATGAGTTGA---TTTT-T--G--A---CA-AAC----ATTGAAATTACCTCAG
127 ACCTCTCGCAATATGAGTTGATTTTTTTATACGAAATTGAAGAACAGAAATTGAAAATACCTCAG
* * * *
91036076 CATGTCCTGAGGCTCAACTCACCTCTCGCAATATGACTTGA-TTTTTTTG-AT-GATAAATTGAA
192 CA-GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAATACAGAAATTGAA
* * *
91036138 AATACCTCAATGTAACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAATAA
256 AATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG---AA-AA
* * *
91036203 ATTAAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATAT
317 A-T---ACA-AACAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATAT
* * * *
91036267 GAGTTGATTTTTGAAAAATAGAAATTGAAAATACGTCAGCGTGTCCCGAGGCTCAACTCACCTCT
376 GAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTCGAGGCTCAACTCACCTCT
* * * * *
91036332 CACAATATGAGTTGATTTTGACGAACAGAAATTGAAAAATAGAAATTGAAAATACCTCAGCGTGT
441 CGCAATATGAGTTGATTTT------------TTTAAAGAT--AAATTGAAAATACCTCAACGTGA
* * * * * * **
91036397 CCTGAGGCTCAACTCACCTCTCGCAATATG-GTTGGTTTTTGAAAAATAATTTAAAAAATAGATT
492 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAA
* ** *
91036461 TTGAAAATACCTC-GACATGTAACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTT
557 TTGACAATACCTCAG-C--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*** * * * * * *
91036522 TTTTGAAACATAGATCGAAAATACCTTAGCATGACCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91036587 GTTGATTTTTTG-AAAACATGAATTGAAAAACAGAAATTTAAAATACCTCAGCACGTGAGCC--G
66 GTTGA-TTTTTGAAAAACATAAATTG---AACAG-------AAATACCTCA--ACGT--GCCTTG
*
91036649 AGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTTT-T--G--A---AAG-ACAGAAATTGA
116 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTATACGAAATTGAAGAACAGAAATTGA
* *
91036705 AAATACCTCAATG-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTAATTT
181 AAATACCTC-A-GCAGTCCTGAGGCTCAACTCACCTCTCGCAATATGA----G-----TTAA-TT
* *
91036769 TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
234 TTTTTTG-AATACAGAAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAAT
* * * *
91036834 ATGAGTTGATTTTTAAAAAAAAACAGA-AATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
298 ATGAGTTGATTTTT-GAAAAATACAAACAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
*
91036898 ACCTCTCAC-A-AT--G-TGA-----G-----CAGAAATTGAAAATACCTCAACGTGTCTTGAGG
362 ACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTCGAGG
* * * **
91036948 CTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGATGATAAATTGAAAATACCTCAATATGA
427 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAGATAAATTGAAAATACCTCAACGTGA
* *
91037013 CTTAAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAAAAATAAATTAAAACACAAAAA
492 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAA
91037078 TTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
557 TTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
91037137 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91037202 GTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACATGCCTTGAGGCTCAACTCACCT
66 GTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACGTGCCTTGAGGCTCAACTCACCT
*
91037267 CTCGCAATATGAGTTGATTTTTTTATGCACAGAAATTGAAGAACAGAAATTGAAAACACCTCAGC
131 CTCGCAATATGAGTTGATTTTTTTAT--AC-GAAATTGAAGAACAGAAATTGAAAATACCTCAGC
* * *
91037332 -GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTGAAATACAGAAATTGGA
193 AGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAA-TTTTTTTTG-AATACAGAAATTGAA
* *
91037396 AATACCTCGACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAA-AC
256 AATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAC
*
91037459 AAAC-ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTGACCTCTCACAATATGAGTTGACTT
321 AAACAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA--T
* ***
91037523 TTTTGAAAAACAGAAATTGAAAATACCTCCACATGTGAAACGAGGCTCAACTCACCTCTCGCAAT
384 TTTTGAAAAACAGAAATTGAAAATACCT-CA-ACGTGTCTCGAGGCTCAACTCACCTCTCGCAAT
* * *
91037588 ATGAGTTGATTTTTTTTATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTC
447 ATGAGTTGATTTTTTTAAAGATAAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTC
91037653 TCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGC
512 TCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGC
*
91037718 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
577 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
91037757 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* ** * * * **
91037822 GTCGA-TTTTGACGAACAGAAATTG---A-AAATACCTTAGCGTATCTTGAGGCTCAACTCACCT
66 GTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACGTGCCTTGAGGCTCAACTCACCT
* ** * * * * **
91037882 CTCGCAATATGAGTTGGTTTTTGAAAACTAATTTGAAAAACAGATTTTGAAAATACCTC-GACAT
131 CTCGCAATATGAGTTGATTTTTTTATACGAAATTGAAGAACAGAAATTGAAAATACCTCAG-CA-
* * * * *
91037946 GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT-AA-ACATAGATCGAAA
194 GT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAATACAGAAATTGAAA
* * * *
91038009 ATACCTCAGCATGACCTGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATG
257 ATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG--AA-A--
* * * * *
91038074 AATTGAGAAACAGAAATTTAAAATACCTCAGCACGTGAGCC-GAGGCTCAACTCACCTCTCGCAA
316 AA-T-ACAAAC---AATTGAAATTACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCACAA
* * *
91038138 TATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCA
373 TATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTCGAGGCTCAACTCA
** * * * *
91038203 CCTCTCGCAATATGAGTTGATTTTTAAAAAAAAAACAGAAATT-AAAATTACCTCAGCGTGTCTT
436 CCTCTCGCAATATGAGTTGATTTTT-----TTAAAGATAAATTGAAAA-TACCTCAACGTGACTT
91038267 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
495 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91038305 TTTATGATAA
Statistics
Matches: 1514, Mismatches: 157, Indels: 212
0.80 0.08 0.11
Matches are distributed among these distances:
601 50 0.03
602 5 0.00
603 44 0.03
604 84 0.06
605 11 0.01
606 3 0.00
609 2 0.00
611 2 0.00
612 84 0.06
613 44 0.03
614 12 0.01
615 192 0.13
616 81 0.05
617 50 0.03
618 31 0.02
619 39 0.03
620 258 0.17
621 35 0.02
622 5 0.00
624 1 0.00
626 55 0.04
627 2 0.00
628 64 0.04
629 2 0.00
630 63 0.04
631 68 0.04
633 36 0.02
635 3 0.00
636 10 0.01
640 48 0.03
641 2 0.00
642 1 0.00
643 2 0.00
644 3 0.00
645 40 0.03
646 1 0.00
647 3 0.00
649 3 0.00
651 11 0.01
652 2 0.00
653 1 0.00
654 61 0.04
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (615 bp):
TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACGTGCCTTGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATTTTTTTATACGAAATTGAAGAACAGAAATTGAAAATACCTCAGCAGT
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAATACAGAAATTGAAAATAC
CTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATACAAACA
ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAA
AAACAGAAATTGAAAATACCTCAACGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTAAAGATAAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTT
Found at i:91037883 original size:72 final size:73
Alignment explanation
Indices: 91037302--91037679 Score: 347
Period size: 77 Copynumber: 5.1 Consensus size: 73
91037292 TGCACAGAAA
* * * *
91037302 TTGAAGAACAGAAATTGAAAACACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
**
91037365 GTTAATTTTTTT
66 GTCGA----TTT
* * *
91037377 TTGAAATACAGAAATTGGAAATACCTC-GACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAG-CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
91037441 AGTTGATTT
65 AGTCGATTT
* * *
91037450 TTGAAAAACA-AACATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTGACCTCTCACAATATG
1 TTGAAAAACAGAA-ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
91037514 AGTTGACTTTT
65 AGTCGA--TTT
**
91037525 TTGAAAAACAGAAATTGAAAATACCTCCA-CATGTGAAAC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTGAAAATACCT-CAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAAT
*
91037588 ATGAGTTGATTT
62 ATGAGTCGATTT
*** ** * ** * *
91037600 TT-TTTATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91037664 GTTGATTT
66 GTCGATTT
91037672 TTGAAAAA
1 TTGAAAAA
91037680 TAAATTAAAA
Statistics
Matches: 258, Mismatches: 30, Indels: 32
0.81 0.09 0.10
Matches are distributed among these distances:
71 1 0.00
72 43 0.17
73 65 0.25
74 19 0.07
75 55 0.21
76 4 0.02
77 70 0.27
78 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTCGATTT
Found at i:91037884 original size:72 final size:73
Alignment explanation
Indices: 91037302--91038382 Score: 453
Period size: 72 Copynumber: 14.1 Consensus size: 73
91037292 TGCACAGAAA
* * * *
91037302 TTGAAGAACAGAAATTGAAAACACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
**
91037365 GTTAATTTTTTT
66 GTCGA----TTT
* * *
91037377 TTGAAATACAGAAATTGGAAATACCTC-GACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAG-CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
91037441 AGTTGATTT
65 AGTCGATTT
* * *
91037450 TTGAAAAACA-AACATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTGACCTCTCACAATATG
1 TTGAAAAACAGAA-ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
91037514 AGTTGACTTTT
65 AGTCGA--TTT
**
91037525 TTGAAAAACAGAAATTGAAAATACCTCCA-CATGTGAAAC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTGAAAATACCT-CAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAAT
*
91037588 ATGAGTTGATTT
62 ATGAGTCGATTT
*** ** * ** * *
91037600 TT-TTTATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91037664 GTTGATTT
66 GTCGATTT
* * *** * * * * *
91037672 TTG-AAAA-ATAAATT-AAAACACAAAAATTGACAAT-ACCTCAGCGTGCCCTGAGGCTCAACTC
1 TTGAAAAACAGAAATTGAAAATAC-CTCA--G-C-GTGTCCT--GAG-G--CTCA-ACTC-AC-C
* *
91037733 ACCTCTCGCAATATGAGTTGATTT
53 TC---TCGCAATATGAGTCGATTT
*
91037757 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
91037822 GTCGA-TT
66 GTCGATTT
** * * *
91037829 TTGACGAACAGAAATTGAAAATACCTTAGCGTATCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
91037894 GTTGGTTT
66 GTCGATTT
* * ** *** * *
91037902 TTG-AAAAC-TAATTTGAAAA-A-CAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTG----T-CCT-G--A-G-G-CTC-A-ACTC---
*
91037963 TCACCTCTCGCAATATGAGTTGATTT
50 --ACCTCTCGCAATATGAGTCGATTT
*** * * * * * *
91037989 TTTTTAAACATAGATCGAAAATACCTCAGCATGACCTGATGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91038054 GTTGATTTT
66 GTCGA-TTT
* ** * * * *
91038063 TTG-AAAACATG-AATTGAGAAACAGAAATTTAAAATACCTCAG-CACGTGA-GC-CGAGGCTCA
1 TTGAAAAACA-GAAATT--G-AA-A-ATACCT--CA-GCGT--GTC-C-TGAGGCTC-A-ACTCA
* * *
91038123 ACTCACCTCTCGCAATATGAGTTGATTTTT
51 CCTC-T----CGCAATATGAGTCGA--TTT
* * * *
91038153 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91038218 GTTGATTT
66 GTCGATTT
* *
91038226 TTAAAAAAAAAACAGAAATT-AAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAA
1 TT----GAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
*
91038290 TATGAGTTGATTT
61 TATGAGTCGATTT
*** ** * * ** * *
91038303 TT-TTTATGATAAATTGAAAATACATCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91038367 GTTGATTT
66 GTCGATTT
91038375 TTGAAAAA
1 TTGAAAAA
91038383 TAAATTAAAA
Statistics
Matches: 781, Mismatches: 133, Indels: 186
0.71 0.12 0.17
Matches are distributed among these distances:
69 3 0.00
70 7 0.01
71 18 0.02
72 168 0.22
73 123 0.16
74 29 0.04
75 73 0.09
76 14 0.02
77 139 0.18
78 11 0.01
79 8 0.01
80 18 0.02
81 10 0.01
82 11 0.01
83 10 0.01
84 14 0.02
85 24 0.03
86 10 0.01
87 33 0.04
88 12 0.02
89 24 0.03
90 9 0.01
91 13 0.02
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.30
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTCGATTT
Found at i:91038011 original size:232 final size:230
Alignment explanation
Indices: 91037308--91038474 Score: 1102
Period size: 230 Copynumber: 5.0 Consensus size: 230
91037298 GAAATTGAAG
* ** * *
91037308 AACAGAAATTGAAAACACCTCAGCGT--CTTGAGGTTCAACTCACCTCTCGCAATATGAGTTAAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* * * *
91037371 TTTTTTTTGA-AATACAGAAATTGGAAATACCTCGACGTGTCTTGAGGCTCAACTCACCTCTCGC
65 ----TTTTGACGA-ACAGAAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGC
* * *
91037435 AATATGAGTTGATTTTTG-----------AAAA-ACAAACATTGAAATTACCTCAGCGTGTCCTG
125 AATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCTG
* *
91037488 AGGCTCAACTGACCTCTCACAATATGAGTTGACTTTTTTGAAA
190 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT-AAA
**
91037531 AACAGAAATTGAAAATACCTCCA-CATGTGAAACGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAATACCT-CAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
**** ** * *
91037595 GATTTTTTTTATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAAT
63 GATTTTGACGAACAGAAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAAT
*
91037660 ATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCTGAGG
128 ATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCTGAGG
*
91037725 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
193 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAA
* *
91037763 AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
91037828 TTTGACGAACAGAAATTGAAAATACCTTAGCGT-ATCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTGACGAACAGAAATTGAAAATACCTCAACGTGA-CTTGAGGCTCAACTCACCTCTCGCAATAT
* * * * **
91037892 GAGTTGGTTTTTGAAAACTAATTTGAAAA-ACAGATTTTGAAAATACCTC-GACATGTGACCC-G
130 GAGTTGATTTTTGAAAAATAAATT-AAAACACAAAAATTGAAAATACCTCAG-C--GTG-CCCTG
**
91037954 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTA
190 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAA
* * * * * *
91037995 AACATAGATCGAAAATACCTCAGCATGACCTGATGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
91038060 TTTTTGAAAACATGAATTGAGAAACAGAAATTTAAAATACCTCAGCACGTGAGC-CGAGGCTCAA
65 -TTTTG---AC---------G-AACAGAAATTGAAAATACCTCA--ACGTGA-CTTGAGGCTCAA
* * *
91038124 CTCACCTCTCGCAATATGAGTTGA-TTTT------T---TTGAAAGACAGAAATTGAAAATACCT
113 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGAAAATACCT
* * * * *
91038179 CAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAAA
178 CAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT----TAAA
* **
91038236 AACAGAAATT-AAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAA-TACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
**** ** * * *
91038300 TTTTTTTTATGATAAATTGAAAATACATCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATAT
65 TTTTGACGAACAGAAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
91038365 GAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACTTCAGCATGCCCCGAGGCT
130 GAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCT
* *
91038430 CAACTCACCTCTCGCAATATGAGTTTATTTTTGAAA
195 CAACTCACCTCTCGCAATATGAGTTGATTTTTTAAA
91038466 AACAGAAAT
1 AACAGAAAT
91038475 AAAAATATCA
Statistics
Matches: 780, Mismatches: 102, Indels: 117
0.78 0.10 0.12
Matches are distributed among these distances:
222 66 0.08
223 22 0.03
224 40 0.05
225 6 0.01
226 17 0.02
227 31 0.04
229 2 0.00
230 139 0.18
231 7 0.01
232 122 0.16
233 12 0.02
234 125 0.16
236 1 0.00
237 42 0.05
238 3 0.00
239 25 0.03
240 4 0.01
241 53 0.07
242 1 0.00
246 1 0.00
247 20 0.03
248 4 0.01
249 35 0.04
250 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (230 bp):
AACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTGACGAACAGAAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTTTAAA
Found at i:91038071 original size:73 final size:74
Alignment explanation
Indices: 91037930--91038072 Score: 218
Period size: 73 Copynumber: 1.9 Consensus size: 74
91037920 AACAGATTTT
**
91037930 GAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTA
1 GAAAATACCTCGACA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
91037995 AACATAGATC
65 AACATAGATC
* *
91038005 GAAAATACCTC-AGCA-TGACCTGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
1 GAAAATACCTCGA-CAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
91038068 AACAT
65 AACAT
91038073 GAATTGAGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
73 49 0.78
74 1 0.02
75 13 0.21
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (74 bp):
GAAAATACCTCGACAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
ACATAGATC
Found at i:91038243 original size:77 final size:76
Alignment explanation
Indices: 91038081--91038467 Score: 347
Period size: 77 Copynumber: 5.0 Consensus size: 76
91038071 ATGAATTGAG
* * *
91038081 AAACAGAAATTTAAAATACCTCAGCACGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
***
91038145 TGATTTTT-TTGAA
63 TGATTTTTAAAAAA
* *
91038158 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
91038223 TTTTTAAAAAAA
66 TTTTT-AAAAAA
*
91038235 AAACAGAAATT-AAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
**
91038299 ATTTTT----TT
65 ATTTTTAAAAAA
* ** * * * *
91038307 TATGATAAATTGAAAATACATCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
91038372 TTTTTGAAAAATAAATTAA
66 TTTTT-----A-AAA--AA
* * * * * * ** *
91038391 AACACAAAAATTGACAATACTTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTT
1 AA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
91038456 ATTTTTGAAAAA
65 ATTTTTAAAAAA
91038468 CAGAAATAAA
Statistics
Matches: 255, Mismatches: 37, Indels: 36
0.78 0.11 0.11
Matches are distributed among these distances:
72 57 0.22
73 4 0.02
74 1 0.00
75 42 0.16
76 4 0.02
77 87 0.34
79 3 0.01
84 1 0.00
85 56 0.22
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (76 bp):
AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTAAAAAA
Found at i:91038324 original size:703 final size:686
Alignment explanation
Indices: 91035852--91038474 Score: 2208
Period size: 703 Copynumber: 3.7 Consensus size: 686
91035842 GTATGAGTCA
* * *
91035852 AGGCTCAACTCACCACTCGCAATATGAGCT-ATTTTTTTTGAAACACAGAAATTGAATAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT--ATCACAGAAA-T---T-A-AG-A
* * * * * *
91035916 ATGGAAAACACCTCAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTG
56 ATCGAAAACACCTCAGCGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTG
* * * * *
91035981 AAAGACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
121 AAATACAGAAATTGAAAATACCTCGACGTGGCTCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
91036046 GA--TTTTT----GACA-AACATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCG
186 GATTTTTTTGAAAGACAGAA-ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
* *** ** * ** ** *
91036104 CAATATGACTTGATTTTT----TTGATGATAAATTGAAAA-TACCTCAATGTAACTTGAGGCTCA
250 CAATATGAGTTGATTTTTAAAAAAAAACAGAAATT-AAAATTACCTCAGCGTGTCATGAGGCTCA
* ** * *
91036164 ACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACC
314 ACTCACCTCTCGCAATATGAGTTGATTTTT------T---TT---A-TGATAAATTGAAAATACC
** * ** *
91036229 TCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG---AA-AAA-T---
366 TCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAA
* * * * * *
91036286 ----AGAAATTGAAAATACGTCAGCGTGTCCC-GAGGCTCAACTCACCTCTCACAATATGAGTTG
431 ACACAAAAATTGACAATACCTCAGCATG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTT
* * *
91036346 ATTTTGACGAACAGAAATTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT
495 A-TTT------------TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACT
* * * * *
91036411 CACCTCTCGCAATATG-GTTGGTTTTTGAAAAATAATTTAAAAAATAGATTTTGAAAATACC-TC
547 CACCTCTCGCAATATGAGTCGATTTTTG----A-AA---AACAGA-A-A--TTGAAAATACCTTA
* * * *** * *
91036474 GACATGTAACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAACATAGATCG
600 G-C--GTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTG
* * *
91036539 ---A-AAATACCTTAGCATGACCT-A
662 AACAGAAATACCTCAACATG-CCTCG
* **
91036560 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATG-AATTGAAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTATCACA-GAAATT-----A-AG-AAT
** * * *
91036624 TTAAAATACCTCAGCACGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGACTTGA-TTTTTT
58 CGAAAACACCTCAG--C--GA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTT
* * * * *
91036687 TTGAAAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
118 TTGAAATACAGAAATTGAAAATACCTCGACGTGGCTCGAGGCTCAACTCACCTCTCGCAATATGA
91036752 GTTGGTTTTTTTAATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTC
183 GTT-G--------A--TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTC
91036817 AACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAAAACAGAAATTAAAATTACCTCAGCGTG
237 AACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAAAACAGAAATTAAAATTACCTCAGCGTG
* * **
91036882 TCCTGAGGCTCAACTCACCTCTCAC-A-AT--G-TGA------GCA-G--AAATTGAAAATACCT
302 TCATGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTATGATAAATTGAAAATACCT
* * * *
91036933 CAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTT------T---TT--GA
367 CAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAA
** * * ** * * *
91036986 -TGATAAATTGAAAATACCTCAATATGACTTAAGGCTCAACTCACCTCTCGCAATATGAGTTTAT
432 CACAAAAATTGACAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTAT
* *
91037050 TTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCAC
497 TTTTG-----------AAAA-ACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCAC
* *
91037115 CTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCT
550 CTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTGAAAATACCTTAGCGTATCCTGAGGCT
91037180 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACA
615 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACA
*
91037245 TGCCTTG
680 TGCCTCG
91037252 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTATGCACAGAAATTGAAGAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAT-CACAGAAATT-----A-AG-AAT
* * * *
91037317 TGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTGAA
58 CGAAAACACCTCAGCGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTGAA
* * *
91037382 ATACAGAAATTGGAAATACCTCGACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
123 ATACAGAAATTGAAAATACCTCGACGTGGCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * * *
91037447 --TTTTTGAAAAACA-AACATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTGACCTCTCACA
188 TTTTTTTGAAAGACAGAA-ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
** ** *
91037509 ATATGAGTTGACTTTTT--TGAAAAACAGAAATTGAAAA-TACCTCCA-CATGTGAAACGAGGCT
252 ATATGAGTTGA-TTTTTAAAAAAAAACAGAAATT-AAAATTACCT-CAGC--GTGTCATGAGGCT
91037570 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTTATGATAAATTGAAAATACCTCAATGTGACT
312 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTTATGATAAATTGAAAATACCTCAATGTGACT
91037635 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATT
377 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATT
* *
91037700 GACAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
442 GACAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAAAAA
*
91037765 CAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TT
507 CAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
** *
91037829 TTGACGAACAGAAATTGAAAATACCTTAGCGTATCTTGAGGCTCAACTCACCTCTCGCAATATGA
572 TTGAAAAACAGAAATTGAAAATACCTTAGCGTATCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
91037894 GTTGGTTTTTG-AAAAC-TAATTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACC-CG
637 GTTGATTTTTGAAAAACATAAATTG---AAC--A----G-AAATACCTCAACA--TG-CCTCG
* *
91037954 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-T-A-A-ACA-T-AG-ATCGAAAATA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTATCACAGAAATTAAGAATCGAAAACA
* *
91038012 CCTCAGCATGACCTGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATGAAT
66 CCTCAGC--GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTT-------T---T
*
91038077 TGAGAA-ACAGAAATTTAAAATACCTCAGCACGTGAGC-CGAGGCTCAACTCACCTCTCGCAATA
119 TGA-AATACAGAAATTGAAAATACCTC-G-ACGTG-GCTCGAGGCTCAACTCACCTCTCGCAATA
*
91038140 TGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACC
180 TGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACC
*
91038205 TCTCGCAATATGAGTTGATTTTTAAAAAAAAAACAGAAATTAAAATTACCTCAGCGTGTCTTGAG
245 TCTCGCAATATGAGTTGATTTTT-AAAAAAAAACAGAAATTAAAATTACCTCAGCGTGTCATGAG
*
91038270 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTATGATAAATTGAAAATACATCAATGTG
309 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTATGATAAATTGAAAATACCTCAATGTG
91038335 ACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAA
374 ACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAA
* *
91038400 ATTGACAATACTTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAA
439 ATTGACAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAA
91038465 AAACAGAAAT
504 AAACAGAAAT
91038475 AAAAATATCA
Statistics
Matches: 1621, Mismatches: 160, Indels: 273
0.79 0.08 0.13
Matches are distributed among these distances:
676 21 0.01
677 70 0.04
678 28 0.02
679 1 0.00
680 2 0.00
681 1 0.00
682 1 0.00
683 3 0.00
687 15 0.01
688 52 0.03
689 77 0.05
690 89 0.05
691 12 0.01
692 183 0.11
693 98 0.06
694 8 0.00
695 1 0.00
696 2 0.00
697 4 0.00
698 3 0.00
699 25 0.02
700 19 0.01
701 95 0.06
702 114 0.07
703 323 0.20
704 9 0.01
705 78 0.05
706 27 0.02
707 2 0.00
708 34 0.02
709 73 0.05
710 33 0.02
711 1 0.00
718 1 0.00
722 5 0.00
725 3 0.00
726 62 0.04
727 2 0.00
728 2 0.00
729 5 0.00
730 37 0.02
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (686 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTATCACAGAAATTAAGAATCGAAAACA
CCTCAGCGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTGAAATACAGAA
ATTGAAAATACCTCGACGTGGCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTAAAAAAAAACAGAAATTAAAATTACCTCAGCGTGTCATGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTTATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCA
CCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGC
ATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAAAAACAGAAATTGAAAAT
ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAA
TTGAAAATACCTTAGCGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
AACATAAATTGAACAGAAATACCTCAACATGCCTCG
Found at i:91043410 original size:16 final size:16
Alignment explanation
Indices: 91043386--91043419 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
91043376 TTTGATTAAT
* *
91043386 CTCTTCAAAACTTAGC
1 CTCTCCAAAAATTAGC
91043402 CTCTCCAAAAATTAGC
1 CTCTCCAAAAATTAGC
91043418 CT
1 CT
91043420 TTACAATAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.06, T:0.29
Consensus pattern (16 bp):
CTCTCCAAAAATTAGC
Found at i:91047480 original size:53 final size:51
Alignment explanation
Indices: 91047400--91047498 Score: 121
Period size: 53 Copynumber: 1.9 Consensus size: 51
91047390 AGTATATAAC
* *
91047400 ATATTTTTTGAATTTTTTTCTATTTTTA-ATAATTTTAATATGTTTTTTTCTAA
1 ATATTTTTTGAATTTTATACTATTTTTATA-AATTTT--TATGTTTTTTTCTAA
*
91047453 ATATTTTTT-AATTTTATAGTATATTTTATAAATTTTTATGTTTTTT
1 ATATTTTTTGAATTTTATACTAT-TTTTATAAATTTTTATGTTTTTT
91047499 ATTTAAAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
51 10 0.24
52 10 0.24
53 20 0.49
54 1 0.02
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (51 bp):
ATATTTTTTGAATTTTATACTATTTTTATAAATTTTTATGTTTTTTTCTAA
Found at i:91047850 original size:15 final size:16
Alignment explanation
Indices: 91047818--91047859 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
91047808 TGATAAAATG
* *
91047818 AAAATTAACTGTTGAA
1 AAAATTAAGTATTGAA
91047834 AAAATTAAGTATT-AA
1 AAAATTAAGTATTGAA
*
91047849 AAAGTTAAGTA
1 AAAATTAAGTA
91047860 GTTTTAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.55, C:0.02, G:0.12, T:0.31
Consensus pattern (16 bp):
AAAATTAAGTATTGAA
Found at i:91049965 original size:8 final size:9
Alignment explanation
Indices: 91049927--91049968 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
91049917 CCCATTTTGA
*
91049927 TTTAATTTT
1 TTTAATATT
91049936 TGTTAAATATT
1 T-TT-AATATT
91049947 TTTAATATT
1 TTTAATATT
91049956 TTTAAT-TT
1 TTTAATATT
91049964 TTTAA
1 TTTAA
91049969 AGGGAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 7 0.23
9 13 0.43
10 4 0.13
11 6 0.20
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTAATATT
Found at i:91050572 original size:20 final size:20
Alignment explanation
Indices: 91050549--91050598 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
91050539 AAATCTAAAT
*
91050549 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGAA
* *
91050569 TAAAATCCTGAAATTCAGAA
1 TAAAATACTAAAATTCAGAA
91050589 TAAGAATACT
1 TAA-AATACT
91050599 GATGTGACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.26
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGAA
Found at i:91051396 original size:6 final size:6
Alignment explanation
Indices: 91051385--91051413 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
91051375 GTTCTCCCCA
91051385 CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
91051414 CCAACATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (6 bp):
CCCTCT
Found at i:91055087 original size:120 final size:120
Alignment explanation
Indices: 91054949--91055241 Score: 500
Period size: 120 Copynumber: 2.4 Consensus size: 120
91054939 AATTATTTTA
* * * *
91054949 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTATATT
*
91055012 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
91055069 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTACTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
91055134 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
91055189 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
91055242 TAAATATGAT
Statistics
Matches: 165, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
119 4 0.02
120 159 0.96
121 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:91055109 original size:15 final size:15
Alignment explanation
Indices: 91055074--91055115 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
91055064 TTAAGAATTT
*
91055074 TATTAAATTAT-ATA
1 TATTTAATTATAATA
91055088 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
91055102 TATTTAATAATAAT
1 TATTTAATTATAAT
91055116 TATGTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:91055224 original size:16 final size:16
Alignment explanation
Indices: 91055203--91055244 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
91055193 TTATTAAATT
*
91055203 ATATATTTTAATTATA
1 ATATATTTTAATAATA
91055219 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
91055234 AT-TATGTTTAA
1 ATATAT-TTTAA
91055245 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:91055229 original size:15 final size:15
Alignment explanation
Indices: 91055194--91055235 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
91055184 TTAAGAATTT
*
91055194 TATTAAATTAT-ATA
1 TATTTAATTATAATA
91055208 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
91055222 TATTTAATAATAAT
1 TATTTAATTATAAT
91055236 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:91055385 original size:157 final size:157
Alignment explanation
Indices: 91055178--91055494 Score: 555
Period size: 157 Copynumber: 2.0 Consensus size: 157
91055168 ATAAGAATAT
*
91055178 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* * *
91055243 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
91055308 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
91055335 TAATTA-TAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTT
1 TAATTATTAAGAATTTTATTAAATTATATATT-TTAATTAAAATATATTTAATAATAATTATGTT
91055399 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
65 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
* *
91055464 ATAATCATTTACCAAAACAATTTTATGC
130 ATAATAATTTACCAAAACAAATTTATGC
91055492 TAA
1 TAA
91055495 GGGTATTTTA
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
156 25 0.16
157 127 0.84
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:91055668 original size:16 final size:17
Alignment explanation
Indices: 91055617--91055686 Score: 126
Period size: 17 Copynumber: 4.2 Consensus size: 17
91055607 GATTAGCTAT
91055617 TACACCTCTAATCCCAA
1 TACACCTCTAATCCCAA
91055634 TACACCTCTAATCCCAA
1 TACACCTCTAATCCCAA
91055651 TACACCTCTAAT-CCAA
1 TACACCTCTAATCCCAA
91055667 TACACCTCTAAT-CCAA
1 TACACCTCTAATCCCAA
91055683 TACA
1 TACA
91055687 GCGAACCAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
16 24 0.45
17 29 0.55
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (17 bp):
TACACCTCTAATCCCAA
Found at i:91055672 original size:33 final size:33
Alignment explanation
Indices: 91055617--91055686 Score: 124
Period size: 33 Copynumber: 2.1 Consensus size: 33
91055607 GATTAGCTAT
91055617 TACACCTCTAATCCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCCAATACACCTCTAAT-CCAA
91055651 TACACCTCTAAT-CCAATACACCTCTAATCCAA
1 TACACCTCTAATCCCAATACACCTCTAATCCAA
91055683 TACA
1 TACA
91055687 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
32 8 0.22
33 16 0.44
34 12 0.33
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (33 bp):
TACACCTCTAATCCCAATACACCTCTAATCCAA
Found at i:91058153 original size:29 final size:30
Alignment explanation
Indices: 91058115--91058191 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 30
91058105 ACAAAATAAT
**
91058115 AACATAAGTGACTAAAACGTAACAT-TTCA
1 AACATAAGTGACTAAAACGTAACATAGGCA
*
91058144 AACATAAGTGACTAAAATGTAACATGAGGCA
1 AACATAAGTGACTAAAACGTAACAT-AGGCA
*
91058175 AACAAAAGTGACTAAAA
1 AACATAAGTGACTAAAA
91058192 ATTGTCTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 24 0.57
31 18 0.43
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.19
Consensus pattern (30 bp):
AACATAAGTGACTAAAACGTAACATAGGCA
Found at i:91060479 original size:20 final size:22
Alignment explanation
Indices: 91060435--91060479 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
91060425 ATTTTAGTAA
*
91060435 TAAATTTTAACAATAATATTTT
1 TAAATTTTAACAATAATATTCT
*
91060457 TAAATTTT-A-AATGATATTCT
1 TAAATTTTAACAATAATATTCT
91060477 TAA
1 TAA
91060480 TATATTACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.57
21 1 0.05
22 8 0.38
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.49
Consensus pattern (22 bp):
TAAATTTTAACAATAATATTCT
Found at i:91060505 original size:26 final size:25
Alignment explanation
Indices: 91060476--91060530 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
91060466 AATGATATTC
91060476 TTAATATATTACTAA-AAATAATTATA
1 TTAATATATTACTAATAAAT-A-TATA
* *
91060502 TTAATATTTTAGTAATAAATATATA
1 TTAATATATTACTAATAAATATATA
91060527 TTAA
1 TTAA
91060531 AATTTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 8 0.31
26 14 0.54
27 4 0.15
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (25 bp):
TTAATATATTACTAATAAATATATA
Found at i:91060882 original size:11 final size:11
Alignment explanation
Indices: 91060866--91060903 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
91060856 TTTAACTGTA
91060866 CAAAAACATGC
1 CAAAAACATGC
91060877 CAAAAACATGC
1 CAAAAACATGC
* *
91060888 CAAACACATAC
1 CAAAAACATGC
91060899 CAAAA
1 CAAAA
91060904 CATAACATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.58, C:0.29, G:0.05, T:0.08
Consensus pattern (11 bp):
CAAAAACATGC
Found at i:91064201 original size:46 final size:46
Alignment explanation
Indices: 91064150--91064644 Score: 622
Period size: 46 Copynumber: 10.8 Consensus size: 46
91064140 GTGTGCTCTC
* ** *
91064150 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
** * **
91064196 TGATATGAAATGTGTAAGACCATGGTTGAAACATACCATGGCAAGT
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
91064242 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*** * *
91064288 TGACGGGAAAATGAATAAGACCATGGTTGAAAAATACCATGGCAACG
1 TGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
** *
91064335 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
91064381 TGATATGAAATGAATAAGACCAT-G--G-AAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
91064423 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
91064469 TGACATGAAATGAGTAAGACCATGGTTGATAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* *
91064515 TGACAGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
***
91064562 TGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * *
91064609 TGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 TGATATG-AAATGAATAAGACCATGGTTGAAAGATAC
91064645 TATGACATCA
Statistics
Matches: 407, Mismatches: 36, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
42 40 0.10
43 2 0.00
45 2 0.00
46 236 0.58
47 127 0.31
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:91064339 original size:93 final size:92
Alignment explanation
Indices: 91064150--91064644 Score: 651
Period size: 93 Copynumber: 5.4 Consensus size: 92
91064140 GTGTGCTCTC
* * * * **
91064150 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGA
*
91064215 CCATGGTTGAAACATACCATGGCAA-G
66 CCATGGTTGAAAGATACCATGGCAACG
**
91064241 TTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAA
1 -TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAATAA
*
91064306 GACCATGGTTGAAAAATACCATGGCAACG
64 GACCATGGTTGAAAGATACCATGGCAACG
* * *
91064335 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAGA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGA
91064400 CCAT-G--G-AAGATACCATGGCAACG
66 CCATGGTTGAAAGATACCATGGCAACG
* * *
91064423 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGA
* *
91064488 CCATGGTTGATAGATACCATGGCAACA
66 CCATGGTTGAAAGATACCATGGCAACG
* * * **
91064515 TGACAGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAATAA
*
91064580 GACCATGGTTGAAAGATACCATGGCAACA
64 GACCATGGTTGAAAGATACCATGGCAACG
* * * *
91064609 TGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
91064645 TATGACATCA
Statistics
Matches: 362, Mismatches: 33, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
88 80 0.22
89 2 0.01
91 2 0.01
92 83 0.23
93 152 0.42
94 43 0.12
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (92 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGA
CCATGGTTGAAAGATACCATGGCAACG
Found at i:91066376 original size:24 final size:23
Alignment explanation
Indices: 91066321--91066407 Score: 66
Period size: 24 Copynumber: 3.6 Consensus size: 23
91066311 TTCGGGTTGT
**
91066321 ATAACAGGAAGCTCATAAAAGTT
1 ATAACAGGAAGCTCATAAAAGCA
**
91066344 ATAATCAGGAAGCTCATGCAAGCCA
1 ATAA-CAGGAAGCTCATAAAAG-CA
* * *
91066369 ATAACAGGTAGCTCCAAAAAACCA
1 ATAACAGGAAGCT-CATAAAAGCA
*
91066393 TTAAACAGGAAGCTC
1 AT-AACAGGAAGCTC
91066408 TAGATAGCCA
Statistics
Matches: 49, Mismatches: 11, Indels: 7
0.73 0.16 0.10
Matches are distributed among these distances:
23 4 0.08
24 27 0.55
25 18 0.37
ACGTcount: A:0.45, C:0.21, G:0.17, T:0.17
Consensus pattern (23 bp):
ATAACAGGAAGCTCATAAAAGCA
Found at i:91066475 original size:25 final size:27
Alignment explanation
Indices: 91066444--91066495 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
91066434 AGCGAGCCAT
91066444 ATCGGGAAGCTC-CAAAGAGCC-TTTA
1 ATCGGGAAGCTCACAAAGAGCCATTTA
*
91066469 ATCGGGAAGCTCACGAAGAGCCATTTA
1 ATCGGGAAGCTCACAAAGAGCCATTTA
91066496 TCGAGACGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 12 0.50
26 8 0.33
27 4 0.17
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
ATCGGGAAGCTCACAAAGAGCCATTTA
Found at i:91066498 original size:26 final size:25
Alignment explanation
Indices: 91066443--91066507 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
91066433 AAGCGAGCCA
91066443 TATCGGGAAGCTC-CAAAGAGCCTT
1 TATCGGGAAGCTCACAAAGAGCCTT
*
91066467 TAATCGGGAAGCTCACGAAGAGCCATT
1 T-ATCGGGAAGCTCACAAAGAGCC-TT
* *
91066494 TATCGAGACGCTCA
1 TATCGGGAAGCTCA
91066508 TAAGAGCTGC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 1 0.03
25 12 0.34
26 19 0.54
27 3 0.09
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.20
Consensus pattern (25 bp):
TATCGGGAAGCTCACAAAGAGCCTT
Found at i:91066976 original size:5 final size:5
Alignment explanation
Indices: 91066947--91066990 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
91066937 TAAATTTAGC
* *
91066947 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCAAT TCA
91066991 CATCCCAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 29 0.85
6 5 0.15
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:91071654 original size:39 final size:39
Alignment explanation
Indices: 91071609--91071885 Score: 419
Period size: 39 Copynumber: 7.1 Consensus size: 39
91071599 ATGCAAGACA
* *
91071609 CTGGAAATGTATACGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
91071648 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
91071687 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGTTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
91071726 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
91071765 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
91071804 CTGGAAATGTATCCAGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * * *
91071843 CTGGAAACGTATCCGAGCTAAAGTCTCGTAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
91071882 CTGG
1 CTGG
91071886 TAATATAATT
Statistics
Matches: 217, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 217 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:91073984 original size:19 final size:18
Alignment explanation
Indices: 91073942--91073991 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
91073932 TCATGCTTTC
* *
91073942 TATTCACATTTTCATATT
1 TATTCACATTTTCAAATA
91073960 TAATTCACATTTTCAAATCA
1 T-ATTCACATTTTCAAAT-A
91073980 TATTCCACATTT
1 TATT-CACATTT
91073992 ACGTTTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 1 0.04
19 18 0.67
20 8 0.30
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (18 bp):
TATTCACATTTTCAAATA
Found at i:91074371 original size:18 final size:18
Alignment explanation
Indices: 91074350--91074386 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
91074340 ACAATTCATA
91074350 TCACTTTCAATTTCAATT
1 TCACTTTCAATTTCAATT
*
91074368 TCACTTTCACTTTCAATT
1 TCACTTTCAATTTCAATT
91074386 T
1 T
91074387 TGATCGCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (18 bp):
TCACTTTCAATTTCAATT
Found at i:91076635 original size:18 final size:18
Alignment explanation
Indices: 91076614--91076651 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
91076604 TCTCATTTCT
91076614 TTTTTTCTATTCATTCCA
1 TTTTTTCTATTCATTCCA
*
91076632 TTTTTTCTATTCATTTCA
1 TTTTTTCTATTCATTCCA
91076650 TT
1 TT
91076652 CATTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTTCTATTCATTCCA
Found at i:91077755 original size:16 final size:17
Alignment explanation
Indices: 91077734--91077766 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
91077724 CACATTGAAG
91077734 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
91077750 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
91077767 CTTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:91084489 original size:18 final size:18
Alignment explanation
Indices: 91084466--91084503 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
91084456 CCGGATTCCC
*
91084466 CTCTCTTCTCTCTCCCTT
1 CTCTCTTCCCTCTCCCTT
*
91084484 CTCTCTTCCCTCTCTCTT
1 CTCTCTTCCCTCTCCCTT
91084502 CT
1 CT
91084504 TATTTTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (18 bp):
CTCTCTTCCCTCTCCCTT
Found at i:91084501 original size:11 final size:12
Alignment explanation
Indices: 91084470--91084502 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
91084460 ATTCCCCTCT
91084470 CTTCTCTC-TCC
1 CTTCTCTCTTCC
91084481 CTTCTCTCTTCC
1 CTTCTCTCTTCC
91084493 C-TCTCTCTTC
1 CTTCTCTCTTC
91084503 TTATTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTCTCTTCC
Found at i:91084984 original size:3 final size:3
Alignment explanation
Indices: 91084961--91085030 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
91084951 AATATCCTTG
* * **
91084961 TTA TT- TTA -TA TTA TTA GTA TTA TTA GTA TTA CCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
91085007 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
91085031 GTACGTGTAT
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
2 4 0.08
3 41 0.80
4 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:91085027 original size:23 final size:22
Alignment explanation
Indices: 91084973--91085033 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
91084963 ATTTTATATT
*
91084973 ATTAGTATTATTA-GTATTACC
1 ATTATTATTATTATGTATTACC
**
91084994 ATTATTATTATTATGTATTAGT
1 ATTATTATTATTATGTATTACC
*
91085016 ATATATTTTTATTATGTA
1 AT-TATTATTATTATGTA
91085034 CGTGTATACC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.35
22 8 0.24
23 14 0.41
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (22 bp):
ATTATTATTATTATGTATTACC
Found at i:91085040 original size:23 final size:23
Alignment explanation
Indices: 91084996--91085041 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
91084986 GTATTACCAT
*
91084996 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
91085019 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
91085042 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:91087374 original size:13 final size:15
Alignment explanation
Indices: 91087358--91087391 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
91087348 AAGAGAGGAG
91087358 AAAAGAA-AAGAAAA
1 AAAAGAAGAAGAAAA
91087372 AAATAGAAGAAGAAAA
1 AAA-AGAAGAAGAAAA
91087388 AAAA
1 AAAA
91087392 CTGAATCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 3 0.17
15 5 0.28
16 10 0.56
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (15 bp):
AAAAGAAGAAGAAAA
Found at i:91087379 original size:15 final size:16
Alignment explanation
Indices: 91087361--91087390 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91087351 AGAGGAGAAA
91087361 AGAA-AAGAAAAAAAT
1 AGAAGAAGAAAAAAAT
91087376 AGAAGAAGAAAAAAA
1 AGAAGAAGAAAAAAA
91087391 ACTGAATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (16 bp):
AGAAGAAGAAAAAAAT
Found at i:91089515 original size:68 final size:66
Alignment explanation
Indices: 91089443--91089848 Score: 204
Period size: 68 Copynumber: 6.2 Consensus size: 66
91089433 CATCATGTGT
*
91089443 ACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC-AGACA-TATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
91089508 TAG
64 TAG
** * * * ***
91089511 ACAAGAGAGCTAC-GGGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCCCCG-GTTGA-ACC-T-
1 ACAAGAGAGCTACAGACATATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-T-ACACCATG
*
91089570 TCGG
64 T-AG
* * * ** * *
91089574 A-AAGATTGGATGATACAG--AT-GGTATGTAGCTAGGTCACATGTAT-AGTGCTGA-GTGCACA
1 ACAAGA---GA-GCTACAGACATATG-ATGTAGCTAGGTCGCATGGGTGA-TACT-ATGTGTACA
*
91089633 TCATGT-G
59 CCATGTAG
91089640 TACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCAT
1 -ACAAGAGAGCTAC-AGACA-TATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCAT
91089705 GTAG
63 GTAG
** * * * * * *
91089709 ACAAGAGAGCTAC-GGGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCAT
1 ACAAGAGAGCTACAGACATATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCAT
91089772 GTAG
63 GTAG
* * * * * *
91089776 ACAAGAGAGCTAC-GAGATA-AACT-T-GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 ACAAGAGAGCTACAGACATATGA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
91089837 -G
65 AG
91089838 TACAAGAGAGC
1 -ACAAGAGAGC
91089849 CGAACTATAT
Statistics
Matches: 259, Mismatches: 47, Indels: 69
0.69 0.13 0.18
Matches are distributed among these distances:
62 6 0.02
63 23 0.09
64 53 0.20
65 24 0.09
66 48 0.19
67 38 0.15
68 64 0.25
69 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (66 bp):
ACAAGAGAGCTACAGACATATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
G
Found at i:91089697 original size:198 final size:198
Alignment explanation
Indices: 91089359--91089755 Score: 776
Period size: 198 Copynumber: 2.0 Consensus size: 198
91089349 AGAGAGAAAT
91089359 CCCGGTTGAACCTTCAGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
1 CCCGGTTGAACCTTCAGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
91089424 CTGAGTGCACATCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
66 CTGAGTGCACATCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
91089489 ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
131 ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
91089554 TTC
196 TTC
*
91089557 CCCGGTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
1 CCCGGTTGAACCTTCAGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
*
91089622 CTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
66 CTGAGTGCACATCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
91089687 ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
131 ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
91089752 TTC
196 TTC
91089755 C
1 C
91089756 AAGTGAAGGA
Statistics
Matches: 197, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
198 197 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (198 bp):
CCCGGTTGAACCTTCAGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
CTGAGTGCACATCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
TTC
Found at i:91089838 original size:198 final size:196
Alignment explanation
Indices: 91089366--91089848 Score: 609
Period size: 198 Copynumber: 2.4 Consensus size: 196
91089356 AATCCCGGTT
** * * *
91089366 GAACCTTCAGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGAGTG
1 GAACCTTCAGAAAGA-T-GATGATACAGATGAAATGTAGCTAGGTCACATGGATAGTACTAAGTG
*
91089431 CACATCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
64 CACACCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
**
91089496 GTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCCCG
129 GTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAG
**
91089561 GTT
194 GAG
* ** * * *
91089564 GAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGAGTG
1 GAACCTTCAGAAAGA-T-GATGATACAGATGAAATGTAGCTAGGTCACATGGATAGTACTAAGTG
* *
91089629 CACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
64 CACACCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
91089694 GTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAG
129 GTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAG
91089759 TGAAG
194 -G-AG
* * *
91089764 GACACCATGT-AGACAAGA-GA-GCTACGAGAT-AAACT-T-GCTAGGTCACATGGGTGGTACTA
1 GA-ACC-T-TCAGA-AAGATGATGATAC-AGATGAAA-TGTAGCTAGGTCACATGGATAGTACTA
**
91089823 AGTGTTCACCATGTGTACAAGAGAGC
60 AGTGCACACCATGTGTACAAGAGAGC
91089849 CGAACTATAT
Statistics
Matches: 259, Mismatches: 18, Indels: 16
0.88 0.06 0.05
Matches are distributed among these distances:
198 232 0.90
199 7 0.03
200 9 0.03
201 3 0.01
202 3 0.01
203 5 0.02
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (196 bp):
GAACCTTCAGAAAGATGATGATACAGATGAAATGTAGCTAGGTCACATGGATAGTACTAAGTGCA
CACCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGT
GTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGGA
G
Found at i:91093188 original size:25 final size:25
Alignment explanation
Indices: 91093160--91093230 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
91093150 ACCTTCTTCT
*
91093160 GAGCCATATAACGGGAAGCTCATA-C
1 GAGCCATATAACGGGAAGCTCA-AGA
* * * *
91093185 GAGCCAAACATCGGGAAGCTTAAGA
1 GAGCCATATAACGGGAAGCTCAAGA
91093210 GAGCCAT-TAATCGGGAAGCTC
1 GAGCCATATAA-CGGGAAGCTC
91093231 GTGAAAGCTA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
24 2 0.06
25 33 0.94
ACGTcount: A:0.35, C:0.23, G:0.27, T:0.15
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCAAGA
Found at i:91098149 original size:18 final size:19
Alignment explanation
Indices: 91098107--91098151 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
91098097 TCAAGATCTT
*
91098107 AAATTAATGTGGTCCAAAG
1 AAATTAATGTGATCCAAAG
91098126 AAATTAATGTGATCCAAA-
1 AAATTAATGTGATCCAAAG
91098144 AAATTAAT
1 AAATTAAT
91098152 TAGTACATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.49, C:0.09, G:0.13, T:0.29
Consensus pattern (19 bp):
AAATTAATGTGATCCAAAG
Found at i:91098467 original size:24 final size:24
Alignment explanation
Indices: 91098435--91098514 Score: 92
Period size: 24 Copynumber: 3.3 Consensus size: 24
91098425 AAATATGTTG
91098435 AATAATAATACTTATAACTTTAAT
1 AATAATAATACTTATAACTTTAAT
* *
91098459 AATAATAATA-TT-TAACAATCATAT
1 AATAATAATACTTATAAC-TTTA-AT
*
91098483 AATAATAATACTTATAATATTTAAT
1 AATAATAATACTTATAA-CTTTAAT
91098508 AATAATA
1 AATAATA
91098515 CAATAATAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
22 4 0.09
23 4 0.09
24 22 0.48
25 11 0.24
26 5 0.11
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (24 bp):
AATAATAATACTTATAACTTTAAT
Found at i:91098492 original size:33 final size:33
Alignment explanation
Indices: 91098455--91098528 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
91098445 CTTATAACTT
* *
91098455 TAATAATAATAATATTTAACAATCATATAATAA
1 TAATAATAATAATATTTAACAATAATACAATAA
* * *
91098488 TAATACTTATAATATTTAATAATAATACAATAA
1 TAATAATAATAATATTTAACAATAATACAATAA
*
91098521 TAAAAATA
1 TAATAATA
91098529 TGTTTAACAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.36
Consensus pattern (33 bp):
TAATAATAATAATATTTAACAATAATACAATAA
Found at i:91101057 original size:7 final size:7
Alignment explanation
Indices: 91101045--91101074 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
91101035 AAATTTCCTT
91101045 TTATATA
1 TTATATA
91101052 TTATATA
1 TTATATA
91101059 TTATATA
1 TTATATA
91101066 TTATATA
1 TTATATA
91101073 TT
1 TT
91101075 TTAAACTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TTATATA
Found at i:91101088 original size:21 final size:21
Alignment explanation
Indices: 91101045--91101088 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
91101035 AAATTTCCTT
* *
91101045 TTATATATTATATATTATATA
1 TTATATATTATAAACTATATA
* *
91101066 TTATATATTTTAAACTATCTA
1 TTATATATTATAAACTATATA
91101087 TT
1 TT
91101089 TTAAATTGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TTATATATTATAAACTATATA
Found at i:91101113 original size:21 final size:20
Alignment explanation
Indices: 91101052--91101114 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 20
91101042 CTTTTATATA
91101052 TTATATATTATATATTATATATT
1 TTATATA-TATATATTA-A-ATT
* * *
91101075 TTAAACTATCTATTTTAAATT
1 TTATA-TATATATATTAAATT
91101096 GTTATATATATATATTAAA
1 -TTATATATATATATTAAA
91101115 CTCTATTTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
21 14 0.44
22 5 0.16
23 11 0.34
24 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (20 bp):
TTATATATATATATTAAATT
Found at i:91101221 original size:11 final size:11
Alignment explanation
Indices: 91101205--91101230 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
91101195 TATATATACA
91101205 TTTTTTTATTT
1 TTTTTTTATTT
91101216 TTTTTTTATTT
1 TTTTTTTATTT
91101227 TTTT
1 TTTT
91101231 AAAGAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:91102149 original size:127 final size:129
Alignment explanation
Indices: 91101827--91102171 Score: 362
Period size: 128 Copynumber: 2.7 Consensus size: 129
91101817 GAAAGTGATG
* ** * * *
91101827 TTTGATGTTTAGAAATTCGAGGGATTGTACTCTAATGTGTTGGGTTTCGATCTTTC-GTTTGTCT
1 TTTGATGCTTAGAAATTCGAGAAATCGTGCCCTAATGTGTTGGGTTTCGATCTTTCTGTTTGTCT
* * * * *
91101891 AAATAGTCAAATTTCCCTTTAAAATTTGATCTGCGTTTTCTAAACCATTAAAACGAAGGCAATA
66 AAATAATCAAATTTCCCTTTAAAATTTCATCCGCGTTTTCTAAACCATTAAAACAAAAGCAATA
** * * *
91101955 TTTGATGCTTAGAAATTCGAGGGATCGTGTCCTAATGTGTTGAGTTTCGATCTTT-TATTTGTCT
1 TTTGATGCTTAGAAATTCGAGAAATCGTGCCCTAATGTGTTGGGTTTCGATCTTTCTGTTTGTCT
* * * * * *
91102019 AAATAATCAGATTTCCCTTTTAAATTTCATCCGCGTTTTCT-TAGCTTTAAAACAAAAGCGATGA
66 AAATAATCAAATTTCCCTTTAAAATTTCATCCGCGTTTTCTAAACCATTAAAACAAAAGCAAT-A
* * *
91102083 -TTGATG-TTTGAGAATTCG-GAAAATCGTGCCCTAATGTGCTGGGTTTCGAT-TTTCTGTTTAT
1 TTTGATGCTTAGA-AATTCGAG-AAATCGTGCCCTAATGTGTTGGGTTTCGATCTTTCTGTTTGT
* **
91102144 ATAAATAATCAAACATCCCTTTAAAATT
64 CTAAATAATCAAATTTCCCTTTAAAATT
91102172 CCGTTTGCAT
Statistics
Matches: 181, Mismatches: 31, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
126 8 0.04
127 80 0.44
128 93 0.51
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (129 bp):
TTTGATGCTTAGAAATTCGAGAAATCGTGCCCTAATGTGTTGGGTTTCGATCTTTCTGTTTGTCT
AAATAATCAAATTTCCCTTTAAAATTTCATCCGCGTTTTCTAAACCATTAAAACAAAAGCAATA
Found at i:91103776 original size:3 final size:3
Alignment explanation
Indices: 91103768--91103811 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
91103758 TAATAAAGTC
91103768 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
91103812 AAAGTAAAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:91105484 original size:5 final size:5
Alignment explanation
Indices: 91105469--91105515 Score: 58
Period size: 5 Copynumber: 9.2 Consensus size: 5
91105459 AGTGGAAAAG
* * *
91105469 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT GGAAT T
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT T
91105516 ATGATTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
5 35 0.90
6 4 0.10
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (5 bp):
TGAAT
Found at i:91106015 original size:44 final size:45
Alignment explanation
Indices: 91105930--91106068 Score: 199
Period size: 45 Copynumber: 3.1 Consensus size: 45
91105920 CTGCTACTGC
** * *
91105930 TACTGCTAATGTTACCGATTCGGCACTTTATGTGTCGAATATTGT
1 TACTGCTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
91105975 TACTGCTACCGTTACCGATT-GACACTTTGTGTGTCGAATATTGT
1 TACTGCTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
* * * *
91106019 TACTGTTACCGTTACCGATTCAACACTTTGTGTGTTGAATACTGT
1 TACTGCTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
91106064 TACTG
1 TACTG
91106069 TTACTGTTCC
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
44 41 0.48
45 44 0.52
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (45 bp):
TACTGCTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
Found at i:91106069 original size:45 final size:45
Alignment explanation
Indices: 91105940--91106080 Score: 205
Period size: 44 Copynumber: 3.2 Consensus size: 45
91105930 TACTGCTAAT
* * *
91105940 GTTACCGATTCGGCACTTTATGTGTCGAATATTGTTACTGCTACC
1 GTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACTGTTACC
91105985 GTTACCGATT-GACACTTTGTGTGTCGAATATTGTTACTGTTACC
1 GTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACTGTTACC
* * * *
91106029 GTTACCGATTCAACACTTTGTGTGTTGAATACTGTTACTGTTACT
1 GTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACTGTTACC
91106074 GTT-CCGA
1 GTTACCGA
91106081 ATTTGTTCCG
Statistics
Matches: 88, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
44 45 0.51
45 43 0.49
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.40
Consensus pattern (45 bp):
GTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACTGTTACC
Found at i:91106273 original size:18 final size:18
Alignment explanation
Indices: 91106252--91106522 Score: 158
Period size: 18 Copynumber: 14.6 Consensus size: 18
91106242 TAACTGATTA
91106252 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
91106270 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
* *
91106288 TTCCTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
91106306 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
91106324 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
91106342 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
* *
91106360 TCACTGAATGAA-TGACTA
1 TTACTGAAT-AATTGACTG
* * *
91106378 CTACTGAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
*
91106397 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
91106414 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
91106432 TTACTGGATAACCGATCAATTGA-TCG
1 TTACT-G---A---AT-AATTGACT-G
* * ** *
91106458 ATACTGAATAACTGGTTA
1 TTACTGAATAATTGACTG
*
91106476 TTATTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
91106494 TTACCGAATAACTGACTG
1 TTACTGAATAATTGACTG
91106512 TTACTGAATAA
1 TTACTGAATAA
91106523 ATAATTGTTC
Statistics
Matches: 195, Mismatches: 38, Indels: 40
0.71 0.14 0.15
Matches are distributed among these distances:
17 20 0.10
18 138 0.71
19 20 0.10
22 2 0.01
25 4 0.02
26 11 0.06
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:91107940 original size:30 final size:30
Alignment explanation
Indices: 91107900--91107957 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
91107890 ACATTTATTT
*
91107900 TTTATATTTTAATTTAAAATTATTTGGTTA
1 TTTATATTTTAAATTAAAATTATTTGGTTA
* * *
91107930 TTTATTTTTTAAATTATAATTTTTTGGT
1 TTTATATTTTAAATTAAAATTATTTGGT
91107958 AAATTTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (30 bp):
TTTATATTTTAAATTAAAATTATTTGGTTA
Found at i:91107968 original size:30 final size:30
Alignment explanation
Indices: 91107900--91107969 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 30
91107890 ACATTTATTT
* * *
91107900 TTTATATTTTAATTTAAAATTATTTGGTTA
1 TTTATTTTTTAAATTAAAATTATTTGGTAA
* *
91107930 TTTATTTTTTAAATTATAATTTTTTGGTAA
1 TTTATTTTTTAAATTAAAATTATTTGGTAA
*
91107960 ATT-TTTTTTA
1 TTTATTTTTTA
91107970 CAATAACATT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (30 bp):
TTTATTTTTTAAATTAAAATTATTTGGTAA
Found at i:91108962 original size:99 final size:102
Alignment explanation
Indices: 91108764--91108968 Score: 283
Period size: 99 Copynumber: 2.0 Consensus size: 102
91108754 AAAAAAAATT
* * *
91108764 TACAATTTTGGCTCCCAATACAATTTTTTTGGAACACTGATTACCGGCACCAATGTATTTAAAAA
1 TACAATTTCGGCTCCCAATACAATTTTTTTGGAACACTGATGACCGACACCAATGTATTTAAAAA
* *
91108829 AAAATTGGGTGCTGGCCATGTAATGGCCGGCACCAAG
66 AAAATTAGGTGCTGGCCATGTAATGGCCGACACCAAG
* * * *
91108866 TACAA-TTCGGCTCCCAATGC-ATTTTTTTGGAACACTGATGGCCGATACCAGTGTATTT-AAAA
1 TACAATTTCGGCTCCCAATACAATTTTTTTGGAACACTGATGACCGACACCAATGTATTTAAAAA
*
91108928 AAAATTAGGTGC-GGACCATGTAATGGTCGACACCAAG
66 AAAATTAGGTGCTGG-CCATGTAATGGCCGACACCAAG
91108965 TACA
1 TACA
91108969 TTTAATAAAA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
98 2 0.02
99 39 0.42
100 33 0.36
101 13 0.14
102 5 0.05
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (102 bp):
TACAATTTCGGCTCCCAATACAATTTTTTTGGAACACTGATGACCGACACCAATGTATTTAAAAA
AAAATTAGGTGCTGGCCATGTAATGGCCGACACCAAG
Found at i:91110273 original size:46 final size:46
Alignment explanation
Indices: 91110221--91110484 Score: 395
Period size: 46 Copynumber: 5.7 Consensus size: 46
91110211 TGTCATAGTG
* * * *
91110221 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
*** *
91110267 TCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
91110313 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* * *
91110359 TCTTTCAACCATGGTTTTACACATTTCATATCAGGCTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
91110405 TCTTTCAACTATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
91110451 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
91110485 AGAGCACACT
Statistics
Matches: 201, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 197 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:91110668 original size:36 final size:36
Alignment explanation
Indices: 91110628--91110702 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
91110618 ATGAGCTTGG
91110628 AATTCAGACCCTAATTCGGATTACCCGTCCGGGCTA
1 AATTCAGACCCTAATTCGGATTACCCGTCCGGGCTA
91110664 AATTCAGACCCTAATTCGGATTACCCGTCCGGGCTA
1 AATTCAGACCCTAATTCGGATTACCCGTCCGGGCTA
91110700 AAT
1 AAT
91110703 CCATTTTACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (36 bp):
AATTCAGACCCTAATTCGGATTACCCGTCCGGGCTA
Found at i:91112584 original size:17 final size:16
Alignment explanation
Indices: 91112564--91112598 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
91112554 ATTAATAATA
91112564 AAATATAAATATTCATT
1 AAATATAAATATT-ATT
*
91112581 AAATATATATATTATT
1 AAATATAAATATTATT
91112597 AA
1 AA
91112599 TAATCAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATATAAATATTATT
Found at i:91114221 original size:92 final size:92
Alignment explanation
Indices: 91114064--91114284 Score: 388
Period size: 92 Copynumber: 2.4 Consensus size: 92
91114054 TTTGACATGA
* * *
91114064 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
91114129 CATGGTCTTATTCATTTCATATCAGGT
66 CATGGTCTTATTCATTTCATATCAGGT
*
91114156 TGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
91114221 CATGGTCTTATTCATTTCATATCAGGT
66 CATGGTCTTATTCATTTCATATCAGGT
* *
91114248 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTC
91114285 ATATCAGAGA
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 122 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.42
Consensus pattern (92 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCATTTCATATCAGGT
Found at i:91114291 original size:46 final size:46
Alignment explanation
Indices: 91114064--91114291 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
91114054 TTTGACATGA
* * * * * *
91114064 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATATCAGGT
91114110 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
* * * *
91114156 TGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
91114202 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
**
91114248 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
91114292 AGAGCACACT
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 161 0.98
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
Found at i:91114991 original size:14 final size:14
Alignment explanation
Indices: 91114972--91115006 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
91114962 AGGAAAATAA
91114972 AATTCTTGCAATTT
1 AATTCTTGCAATTT
91114986 AATTCTTGCAATTT
1 AATTCTTGCAATTT
91115000 AATTCTT
1 AATTCTT
91115007 ATTTCCAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.06, T:0.51
Consensus pattern (14 bp):
AATTCTTGCAATTT
Found at i:91116797 original size:30 final size:30
Alignment explanation
Indices: 91116730--91116797 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
91116720 CACCCTTAAA
* * * *
91116730 ATATTTGCACTATTAGTCCTTCAACTTTTT
1 ATATTTACACTATTAATCCTTCAAATTTTG
91116760 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTG
91116789 ACTATTTAC
1 A-TATTTAC
91116798 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTG
Found at i:91122322 original size:23 final size:23
Alignment explanation
Indices: 91122292--91122335 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
91122282 TTAATCCAAC
91122292 ATTGGCTAAAGAACACTCACAAT
1 ATTGGCTAAAGAACACTCACAAT
91122315 ATTGGCTAAAGAACACTCACA
1 ATTGGCTAAAGAACACTCACA
91122336 TAGTCACACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.23, G:0.14, T:0.20
Consensus pattern (23 bp):
ATTGGCTAAAGAACACTCACAAT
Found at i:91125432 original size:25 final size:25
Alignment explanation
Indices: 91125310--91125432 Score: 156
Period size: 25 Copynumber: 4.9 Consensus size: 25
91125300 TTCAACTCTT
* * * *
91125310 ATGAGCTTCCTGATACTCAACTCGC
1 ATGAGCTTCCCGTTATTCAGCTCGC
* *
91125335 ATGAGTTTCCCGTTATTCAGCTCGT
1 ATGAGCTTCCCGTTATTCAGCTCGC
*
91125360 ATGAGCTTCCCGTTATTCAGCTTGC
1 ATGAGCTTCCCGTTATTCAGCTCGC
*
91125385 ATGAGCTTCCCATTATTCAGCTCGC
1 ATGAGCTTCCCGTTATTCAGCTCGC
* *
91125410 ATGATCTTCCCGTTATTCGGCTC
1 ATGAGCTTCCCGTTATTCAGCTC
91125433 AAAGGAGCTT
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 84 1.00
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATTCAGCTCGC
Found at i:91128609 original size:43 final size:41
Alignment explanation
Indices: 91128538--91128698 Score: 148
Period size: 43 Copynumber: 3.8 Consensus size: 41
91128528 CAGAAAACTC
* * * * *
91128538 ATACAATGCCAACGTCCTAGATGTGGTCTTACTTGTAATCAA
1 ATACGATGCCAA-GTCCCAGACGTGGTCTTACATGAAATCAA
*
91128580 ATATCGATGCCACTGTCCCAGACAG-GGTCTTACATGAAATCAA
1 ATA-CGATGCCA-AGTCCCAGAC-GTGGTCTTACATGAAATCAA
*
91128623 ATACGATGCCAAGTCCCAGACGTGGTCTTACACGTAAATAGCAA
1 ATACGATGCCAAGTCCCAGACGTGGTCTTACATG-AAAT--CAA
*
91128667 AT-C-AGTGCCAACGTCTCAGACGTGGTCTTACA
1 ATACGA-TGCCAA-GTCCCAGACGTGGTCTTACA
91128699 CAATAACACA
Statistics
Matches: 101, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
40 1 0.01
41 19 0.19
42 16 0.16
43 40 0.40
44 25 0.25
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
ATACGATGCCAAGTCCCAGACGTGGTCTTACATGAAATCAA
Found at i:91146011 original size:38 final size:38
Alignment explanation
Indices: 91145969--91146151 Score: 231
Period size: 38 Copynumber: 4.8 Consensus size: 38
91145959 TAAAATCTGT
* * *
91145969 AGGCTTTGTACTGGTATTATATCCGGGTTAAATCCCAC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
*
91146007 AGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
*
91146045 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCTCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
* * * * *
91146083 AGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCCCGT
1 AGGCTTCGTGCTGGTATTATATCCG-GGTTAAA-TCCCGC
* * *
91146123 AGGCTTCGTGCTGGTGTTATGTTCGGGTT
1 AGGCTTCGTGCTGGTATTATATCCGGGTT
91146152 TTATACATTG
Statistics
Matches: 124, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
38 92 0.74
39 9 0.07
40 23 0.19
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (38 bp):
AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
Found at i:91148776 original size:26 final size:26
Alignment explanation
Indices: 91148747--91148802 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
91148737 TATGTTTTGT
*
91148747 CTTGATATTTAGTCTATATTATTTAA
1 CTTGATATTAAGTCTATATTATTTAA
* *
91148773 CTTGTTCTTAAGTCTATATTATTTAA
1 CTTGATATTAAGTCTATATTATTTAA
91148799 CTTG
1 CTTG
91148803 TTCTTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.54
Consensus pattern (26 bp):
CTTGATATTAAGTCTATATTATTTAA
Found at i:91148803 original size:26 final size:26
Alignment explanation
Indices: 91148757--91148809 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
91148747 CTTGATATTT
91148757 AGTCTATATTATTTAACTTGTTCTTA
1 AGTCTATATTATTTAACTTGTTCTTA
91148783 AGTCTATATTATTTAACTTGTTCTTA
1 AGTCTATATTATTTAACTTGTTCTTA
91148809 A
1 A
91148810 AAAAAAACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (26 bp):
AGTCTATATTATTTAACTTGTTCTTA
Found at i:91151669 original size:59 final size:60
Alignment explanation
Indices: 91151577--91151715 Score: 264
Period size: 59 Copynumber: 2.4 Consensus size: 60
91151567 TATTGTCGGG
91151577 ATTACCAGTCCAGGCTAAA-TCCCTTGCAACGACAATTACTCTAATGAGCTTGGATCTGA
1 ATTACCAGTCCAGGCTAAATTCCCTTGCAACGACAATTACTCTAATGAGCTTGGATCTGA
91151636 ATTACCAGTCCAGGCTAAATTCCC-TGCAACGACAATTACTCTAATGAGCTTGGATCTGA
1 ATTACCAGTCCAGGCTAAATTCCCTTGCAACGACAATTACTCTAATGAGCTTGGATCTGA
91151695 ATTACCAGTCCAGGCTAAATT
1 ATTACCAGTCCAGGCTAAATT
91151716 TAGACCCTAA
Statistics
Matches: 79, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
59 75 0.95
60 4 0.05
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (60 bp):
ATTACCAGTCCAGGCTAAATTCCCTTGCAACGACAATTACTCTAATGAGCTTGGATCTGA
Found at i:91153591 original size:24 final size:24
Alignment explanation
Indices: 91153564--91153634 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
91153554 TTGTCAGGAG
91153564 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
91153588 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
91153612 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
91153635 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:91153646 original size:48 final size:48
Alignment explanation
Indices: 91153564--91153657 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
91153554 TTGTCAGGAG
** * *
91153564 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGA-TAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATTAAGGGAT
91153612 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATTAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATTAAGG
91153658 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 31 0.79
49 5 0.13
ACGTcount: A:0.35, C:0.03, G:0.37, T:0.24
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATTAAGGGAT
Found at i:91155150 original size:26 final size:26
Alignment explanation
Indices: 91155043--91155153 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
91155033 AGGAAGCATC
* *
91155043 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACA-TTATCTGTT
*
91155070 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
91155097 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
91155124 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
91155150 CTGG
1 CTGG
91155154 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 15 0.20
27 59 0.78
28 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:91167943 original size:11 final size:11
Alignment explanation
Indices: 91167927--91167954 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
91167917 ATAAGAATTG
91167927 AAAATAATATT
1 AAAATAATATT
91167938 AAAATAATATT
1 AAAATAATATT
91167949 AAAATA
1 AAAATA
91167955 TTATAACCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATAATATT
Found at i:91181752 original size:23 final size:23
Alignment explanation
Indices: 91181726--91181770 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91181716 TAGGTATGTG
*
91181726 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
91181749 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
91181771 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:91188402 original size:23 final size:23
Alignment explanation
Indices: 91188376--91188420 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91188366 TAAGTATGTG
*
91188376 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
91188399 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
91188421 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:91193741 original size:47 final size:47
Alignment explanation
Indices: 91193687--91193971 Score: 392
Period size: 47 Copynumber: 6.1 Consensus size: 47
91193677 TTAGGATTTT
** * * *
91193687 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
91193734 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
91193781 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
91193828 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
***
91193875 ATGTGATGAATGTGAACATGCATATATGTGATAAGGAAAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
91193922 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
91193969 ATG
1 ATG
91193972 CGAAATGTGT
Statistics
Matches: 216, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 213 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:91193764 original size:25 final size:25
Alignment explanation
Indices: 91193735--91193859 Score: 85
Period size: 25 Copynumber: 5.2 Consensus size: 25
91193725 GAATGGCAAA
91193735 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
91193760 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
91193782 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
*
91193807 TGTGAT-AAGGTCG-A-ATGGCCA-A--
1 TGTGATGAATGT-GAACAT-G-CATATG
91193829 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
91193854 TGTGAT
1 TGTGAT
91193860 AAGGCCGAAT
Statistics
Matches: 76, Mismatches: 6, Indels: 36
0.64 0.05 0.31
Matches are distributed among these distances:
22 18 0.24
23 17 0.22
24 17 0.22
25 24 0.32
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:91193834 original size:22 final size:22
Alignment explanation
Indices: 91193760--91193881 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
91193750 CATGCATATG
*
91193760 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
*
91193782 TGTGATGAATGT-GAACAT-G-CATA
1 TGTGAT-AAGGTCG-A-ATGGCCA-A
91193805 TGTGTGATAAGGTCGAATGGCCAA
1 --TGTGATAAGGTCGAATGGCCAA
*
91193829 TGTGATGAATGT-GAACAT-G-CATA
1 TGTGAT-AAGGTCG-A-ATGGCCA-A
*
91193852 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGTCGAATGGCCAA
91193876 TGTGAT
1 TGTGAT
91193882 GAATGTGAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 36
0.64 0.05 0.31
Matches are distributed among these distances:
22 24 0.32
23 17 0.22
24 17 0.22
25 18 0.24
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGTCGAATGGCCAA
Found at i:91194001 original size:46 final size:46
Alignment explanation
Indices: 91193945--91194127 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
91193935 GGAAGTGTAT
* *
91193945 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
91193991 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATAG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
91194037 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
91194083 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
91194128 TGTATATATA
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:91195941 original size:60 final size:60
Alignment explanation
Indices: 91195853--91195989 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 60
91195843 CAGTGTTAAC
* * * *
91195853 TGGGCCTTAGTCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATGAATCTAGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
91195914 TGGGCCTAGCCCATATCAGTATGAATCTAGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATGAATCTAGGCCATAGCCCTATTACAAGTCGAGATATAT
*
91195974 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
91195990 TAACACAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
60 51 0.77
61 13 0.20
62 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATGAATCTAGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:91197682 original size:19 final size:18
Alignment explanation
Indices: 91197645--91197688 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
91197635 ATACATACAG
91197645 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
91197662 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
91197681 TACTAATT
1 TAATAATT
91197689 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:91201801 original size:46 final size:46
Alignment explanation
Indices: 91201751--91201926 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
91201741 TGGTTGAGCA
91201751 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91201797 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
91201842 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91201890 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91201927 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:91201907 original size:93 final size:93
Alignment explanation
Indices: 91201748--91201919 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91201738 GGATGGTTGA
* *
91201748 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91201813 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
91201841 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91201906 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
91201920 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91206174 original size:13 final size:13
Alignment explanation
Indices: 91206158--91206182 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91206148 ATAAATTCGT
91206158 AAATATTTATGAG
1 AAATATTTATGAG
91206171 AAATATTTATGA
1 AAATATTTATGA
91206183 AGCTAGTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (13 bp):
AAATATTTATGAG
Found at i:91206444 original size:29 final size:30
Alignment explanation
Indices: 91206403--91206462 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
91206393 TATTATTGTT
91206403 ATTATTGTCATTATATTA-CAAATTAAATTA
1 ATTATTGTCATTATATTATCAAA-TAAATTA
* *
91206433 ATTA-TGTTATTATATTATGAAATAAATTA
1 ATTATTGTCATTATATTATCAAATAAATTA
91206462 A
1 A
91206463 GAAAAGACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (30 bp):
ATTATTGTCATTATATTATCAAATAAATTA
Found at i:91206748 original size:16 final size:17
Alignment explanation
Indices: 91206719--91206759 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
91206709 ATATATATAT
*
91206719 AAAGTAAAAGGAATA-AA
1 AAAG-AAAAAGAATAGAA
91206736 AAAGAAAAAGAATAGAA
1 AAAGAAAAAGAATAGAA
91206753 AAAGAAA
1 AAAGAAA
91206760 GAAAGGATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (17 bp):
AAAGAAAAAGAATAGAA
Found at i:91207882 original size:51 final size:53
Alignment explanation
Indices: 91207798--91207912 Score: 144
Period size: 51 Copynumber: 2.2 Consensus size: 53
91207788 ATGTGTCGAC
* *
91207798 TACTGTGACTGTTTCGGATTCGTTCCGAAGAGGTAC-TCTGTACC-TGACTGT
1 TACTGTTACTGTTTCAGATTCGTTCCGAAGAGGTACTTCTGTACCATGACTGT
* * * * *
91207849 TACTGTTACTGTTTCAGATTTGTTTCGATGAGGTACTTTGTGTACCATTACTGT
1 TACTGTTACTGTTTCAGATTCGTTCCGAAGAGGTAC-TTCTGTACCATGACTGT
91207903 TACTGTTACT
1 TACTGTTACT
91207913 ATTACTGTTA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
51 31 0.57
53 7 0.13
54 16 0.30
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (53 bp):
TACTGTTACTGTTTCAGATTCGTTCCGAAGAGGTACTTCTGTACCATGACTGT
Found at i:91207907 original size:6 final size:6
Alignment explanation
Indices: 91207896--91207929 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
91207886 TTGTGTACCA
* *
91207896 TTACTG TTACTG TTACTA TTACTG TTACCG TTAC
1 TTACTG TTACTG TTACTG TTACTG TTACTG TTAC
91207930 GGTGTATTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.47
Consensus pattern (6 bp):
TTACTG
Found at i:91207918 original size:18 final size:18
Alignment explanation
Indices: 91207895--91207929 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
91207885 TTTGTGTACC
*
91207895 ATTACTGTTACTGTTACT
1 ATTACTGTTACCGTTACT
91207913 ATTACTGTTACCGTTAC
1 ATTACTGTTACCGTTAC
91207930 GGTGTATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (18 bp):
ATTACTGTTACCGTTACT
Found at i:91208080 original size:18 final size:18
Alignment explanation
Indices: 91208059--91208111 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
91208049 GACTGCTACG
*
91208059 GAATAATTGACTGTTATT
1 GAATAAATGACTGTTATT
* * *
91208077 GAATAAATAACTATTACT
1 GAATAAATGACTGTTATT
* *
91208095 GCATAACTGACTGTTAT
1 GAATAAATGACTGTTAT
91208112 AGAGTGCCGG
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (18 bp):
GAATAAATGACTGTTATT
Found at i:91210393 original size:52 final size:51
Alignment explanation
Indices: 91210335--91210534 Score: 178
Period size: 52 Copynumber: 3.9 Consensus size: 51
91210325 GATAGAAAAG
* *
91210335 ATGTGATATGTGCTTCCGTTTAAGACCATAGCTGGGCTATAGCATCGGTACA
1 ATGTGATATGTG-TTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
***
91210387 ATGTGAT-TCGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATAT-GTGTT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* * * * *
91210439 ATGTGATAATGTGATTCCATAGAAGACCATATCTGGGATATGGCATTGGT---
1 ATGTGAT-ATGTG-TTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* * * * *
91210489 ATGT--TATGTGATCCGTGTAAGACCATGGCAGGGCTATGGCTTCGGT
1 ATGTGATATGTGTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
91210535 GTGTGATGTG
Statistics
Matches: 123, Mismatches: 20, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
46 26 0.21
47 5 0.04
48 1 0.01
50 4 0.03
51 3 0.02
52 49 0.40
53 32 0.26
54 3 0.02
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (51 bp):
ATGTGATATGTGTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
Found at i:91210468 original size:105 final size:98
Alignment explanation
Indices: 91210334--91210537 Score: 219
Period size: 105 Copynumber: 2.0 Consensus size: 98
91210324 TGATAGAAAA
* * ** *
91210334 GATGTGATATGTGCTTCCGTTTAAGACCATAGCTGGGCTATAGCATCGGTACAATGTGATTCGTG
1 GATGTGATATGTGATTCCATAGAAGACCATAGCTGGGATATAGCATCGGT---ATGTGA-T-GTG
* *
91210399 TTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGT
61 AT-CCGTATAAGACCATAGCAGGGCTATGGCATCGGTGT
* * * *
91210438 GATGTGATAATGTGATTCCATAGAAGACCATATCTGGGATATGGCATTGGTATGTTATGTGATCC
1 GATGTGAT-ATGTGATTCCATAGAAGACCATAGCTGGGATATAGCATCGGTATGTGATGTGATCC
* * *
91210503 GTGTAAGACCATGGCAGGGCTATGGCTTCGGTGT
65 GTATAAGACCATAGCAGGGCTATGGCATCGGTGT
91210537 G
1 G
91210538 TGATGTGTGA
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
99 33 0.39
100 4 0.05
101 1 0.01
102 5 0.06
104 8 0.09
105 34 0.40
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (98 bp):
GATGTGATATGTGATTCCATAGAAGACCATAGCTGGGATATAGCATCGGTATGTGATGTGATCCG
TATAAGACCATAGCAGGGCTATGGCATCGGTGT
Found at i:91213459 original size:25 final size:25
Alignment explanation
Indices: 91213418--91213560 Score: 142
Period size: 25 Copynumber: 5.7 Consensus size: 25
91213408 GGTCACCGAT
** *
91213418 TTCAGCTCTTATGAGCTTCCCAATA
1 TTCAGCTCGCATGAGCTTCCCATTA
* * **
91213443 CTCAGCTCGCATAAGCTTCCTGTTA
1 TTCAGCTCGCATGAGCTTCCCATTA
*
91213468 TTCAGCTCGCATGAGCTTCCTATTA
1 TTCAGCTCGCATGAGCTTCCCATTA
* *
91213493 TTCATCTCGCATGAGCTTCCCGTTA
1 TTCAGCTCGCATGAGCTTCCCATTA
** *
91213518 TTCAGCTCATATGAGCTTCCCGTTA
1 TTCAGCTCGCATGAGCTTCCCATTA
* * *
91213543 TTTAGCTCGGAGGAGCTT
1 TTCAGCTCGCATGAGCTT
91213561 AACATTTACA
Statistics
Matches: 98, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 98 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (25 bp):
TTCAGCTCGCATGAGCTTCCCATTA
Found at i:91213559 original size:50 final size:50
Alignment explanation
Indices: 91213418--91213560 Score: 169
Period size: 50 Copynumber: 2.9 Consensus size: 50
91213408 GGTCACCGAT
* * * * *
91213418 TTCAGCTCTTATGAGCTTCCCAATACTCAGCTCGCATAAGCTTCCTGTTA
1 TTCAGCTCATATGAGCTTCCCATTATTCAGCTCGCATGAGCTTCCCGTTA
** * *
91213468 TTCAGCTCGCATGAGCTTCCTATTATTCATCTCGCATGAGCTTCCCGTTA
1 TTCAGCTCATATGAGCTTCCCATTATTCAGCTCGCATGAGCTTCCCGTTA
* * * *
91213518 TTCAGCTCATATGAGCTTCCCGTTATTTAGCTCGGAGGAGCTT
1 TTCAGCTCATATGAGCTTCCCATTATTCAGCTCGCATGAGCTT
91213561 AACATTTACA
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (50 bp):
TTCAGCTCATATGAGCTTCCCATTATTCAGCTCGCATGAGCTTCCCGTTA
Found at i:91223052 original size:30 final size:30
Alignment explanation
Indices: 91222977--91223074 Score: 78
Period size: 30 Copynumber: 3.2 Consensus size: 30
91222967 TCGAAGGATT
* *
91222977 TATTATTATTTTTGTTAAATTT--TGTTATAA
1 TATTTTTATTTTTG-TAAATTTAAAGTT-TAA
91223007 TATGTTTAGTATTTTTGTAAATTTAAAGTTTAA
1 TAT-TTT--TATTTTTGTAAATTTAAAGTTTAA
* *
91223040 TATTTTTATTTTT-AAGAATTTAAATTTTAA
1 TATTTTTATTTTTGTA-AATTTAAAGTTTAA
91223070 -ATTTT
1 TATTTT
91223075 AAGCTTAATT
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
29 6 0.10
30 23 0.40
31 2 0.03
32 10 0.17
33 14 0.24
34 3 0.05
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (30 bp):
TATTTTTATTTTTGTAAATTTAAAGTTTAA
Found at i:91223066 original size:22 final size:23
Alignment explanation
Indices: 91223035--91223077 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
91223025 AAATTTAAAG
* *
91223035 TTTAATATTTTTATTTTTAAGAA
1 TTTAATATTTTAAATTTTAAGAA
91223058 TTTAA-ATTTTAAATTTTAAG
1 TTTAATATTTTAAATTTTAAG
91223078 CTTAATTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTTAATATTTTAAATTTTAAGAA
Found at i:91230961 original size:16 final size:15
Alignment explanation
Indices: 91230929--91230962 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
91230919 CAATAAAAAT
*
91230929 AAATAAAATTTTAAA
1 AAATAAAATTATAAA
91230944 AAATAAAATTAATAAA
1 AAATAAAATT-ATAAA
91230960 AAA
1 AAA
91230963 ATTAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AAATAAAATTATAAA
Found at i:91230961 original size:17 final size:17
Alignment explanation
Indices: 91230924--91230974 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
91230914 CTTAACAATA
91230924 AAAATAAATAAAATT--T
1 AAAA-AAATAAAATTAAT
*
91230940 TAAAAAATAAAATTAAT
1 AAAAAAATAAAATTAAT
* *
91230957 AAAAAAATTAATTTAAT
1 AAAAAAATAAAATTAAT
91230974 A
1 A
91230975 TTTTTAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 10 0.34
16 3 0.10
17 16 0.55
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAAAAATAAAATTAAT
Found at i:91232225 original size:13 final size:13
Alignment explanation
Indices: 91232207--91232233 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91232197 GTTTTGTTAC
91232207 ATGTGATTCATTT
1 ATGTGATTCATTT
91232220 ATGTGATTCATTT
1 ATGTGATTCATTT
91232233 A
1 A
91232234 GTTTTTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (13 bp):
ATGTGATTCATTT
Found at i:91238605 original size:138 final size:133
Alignment explanation
Indices: 91238352--91238616 Score: 467
Period size: 138 Copynumber: 2.0 Consensus size: 133
91238342 CCGCAAAATC
*
91238352 TACGATTTTTAAAGATTGAAATTGAATTCCTTTTTTCTTTCTCAATACTACAGATAGATTCTAGA
1 TACGATTTTTAAAGATTGAAACTGAATTCCTTTTTTCTTTCTCAATACTACAGATAGATTCTAGA
*
91238417 ATCAAATGATAAACCTATAGAATCTCAGAGACATACACAGGACAATTAATAAATAAGCAAGGGCG
66 ATCAAATGATAAACCTATAGAATCTCAGAGACATACACAGGACAAGTAATAAATAAGCAAGGGCG
91238482 CCA
131 CCA
91238485 TACGATTTTTTAAAGATTGAAACTGAATTCCTTTTATCTTTCTTTCTCAATACTACAGATAGATT
1 TACGA-TTTTTAAAGATTGAAACTGAATTCC--TT-T-TTTCTTTCTCAATACTACAGATAGATT
91238550 CTAGAATCAAATGATAAACCTATAGAATCTCAGAGACATACACAGGACAAGTAATAAATAAGCAA
61 CTAGAATCAAATGATAAACCTATAGAATCTCAGAGACATACACAGGACAAGTAATAAATAAGCAA
91238615 GG
126 GG
91238617 CCATGATGAT
Statistics
Matches: 125, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
133 5 0.04
134 24 0.19
136 2 0.02
137 1 0.01
138 93 0.74
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (133 bp):
TACGATTTTTAAAGATTGAAACTGAATTCCTTTTTTCTTTCTCAATACTACAGATAGATTCTAGA
ATCAAATGATAAACCTATAGAATCTCAGAGACATACACAGGACAAGTAATAAATAAGCAAGGGCG
CCA
Done.