Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 278 of 311
Found at i:91242885 original size:21 final size:21
Alignment explanation
Indices: 91242861--91242903 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
91242851 TTGTATTTTT
91242861 AATTGCAGTAATTAACTTAAA
1 AATTGCAGTAATTAACTTAAA
91242882 AATTGCAGTAATTAACTTAAA
1 AATTGCAGTAATTAACTTAAA
91242903 A
1 A
91242904 TAATACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (21 bp):
AATTGCAGTAATTAACTTAAA
Found at i:91250517 original size:12 final size:13
Alignment explanation
Indices: 91250494--91250520 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91250484 AGTTTAGCAT
91250494 TACTTTTAAAAAG
1 TACTTTTAAAAAG
91250507 TACTTTTAAAAAG
1 TACTTTTAAAAAG
91250520 T
1 T
91250521 GTTATGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (13 bp):
TACTTTTAAAAAG
Found at i:91253406 original size:38 final size:38
Alignment explanation
Indices: 91253364--91253439 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
91253354 TCACATGAAT
91253364 ATCAAGAACCATGTATGAGCTCATCAATATCAAATTTC
1 ATCAAGAACCATGTATGAGCTCATCAATATCAAATTTC
91253402 ATCAAGAACCATGTATGAGCTCATCAATATCAAATTTC
1 ATCAAGAACCATGTATGAGCTCATCAATATCAAATTTC
91253440 CATGTATTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (38 bp):
ATCAAGAACCATGTATGAGCTCATCAATATCAAATTTC
Found at i:91253669 original size:25 final size:23
Alignment explanation
Indices: 91253632--91253751 Score: 89
Period size: 24 Copynumber: 4.9 Consensus size: 23
91253622 AGCTCTCTCT
91253632 TGAGCCATATAACGGAAAGCTCATG
1 TGAGCCAT-TAACGG-AAGCTCATG
*
91253657 TGAGCCATGTAACGGGAAGCTCCA-A
1 TGAGCCAT-TAAC-GGAAGCT-CATG
*
91253682 AGAGCCATTAACAGGAAGCTCATG
1 TGAGCCATTAAC-GGAAGCTCATG
* * * **
91253706 CGAGCCAATATCAGGAAGCTCCGG
1 TGAGCCATTAAC-GGAAGCTCATG
*
91253730 AGAGCCATTAACGGGAAGCTCA
1 TGAGCCATTAAC-GGAAGCTCA
91253752 CAAAAAACCT
Statistics
Matches: 77, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
23 2 0.03
24 47 0.61
25 24 0.31
26 4 0.05
ACGTcount: A:0.34, C:0.23, G:0.27, T:0.16
Consensus pattern (23 bp):
TGAGCCATTAACGGAAGCTCATG
Found at i:91253698 original size:24 final size:24
Alignment explanation
Indices: 91253658--91253785 Score: 105
Period size: 24 Copynumber: 5.2 Consensus size: 24
91253648 AAGCTCATGT
91253658 GAGCCATGTAACGGGAAGCTCCAAA
1 GAGCCAT-TAACGGGAAGCTCCAAA
* **
91253683 GAGCCATTAACAGGAAGCT-CATGC
1 GAGCCATTAACGGGAAGCTCCA-AA
* * * **
91253707 GAGCCAATATCAGGAAGCTCCGGA
1 GAGCCATTAACGGGAAGCTCCAAA
91253731 GAGCCATTAACGGGAAGCTCACAAA
1 GAGCCATTAACGGGAAGCTC-CAAA
* * *
91253756 AAACCTTTAAACGGGAAGCTCACAAA
1 GAGCCATT-AACGGGAAGCTC-CAAA
91253782 GAGC
1 GAGC
91253786 TATATATCGG
Statistics
Matches: 82, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
23 2 0.02
24 46 0.56
25 15 0.18
26 19 0.23
ACGTcount: A:0.38, C:0.24, G:0.25, T:0.13
Consensus pattern (24 bp):
GAGCCATTAACGGGAAGCTCCAAA
Found at i:91253735 original size:48 final size:48
Alignment explanation
Indices: 91253633--91253751 Score: 141
Period size: 48 Copynumber: 2.4 Consensus size: 48
91253623 GCTCTCTCTT
* * *
91253633 GAGCCATATAACGGAAAGCTCATGTGAGCCATGTAACGGGAAGCTCCAAA
1 GAGCCAT-TAACGG-AAGCTCATGCGAGCCATATAACAGGAAGCTCCAAA
* **
91253683 GAGCCATTAACAGGAAGCTCATGCGAGCCA-ATATCAGGAAGCTCCGGA
1 GAGCCATTAAC-GGAAGCTCATGCGAGCCATATAACAGGAAGCTCCAAA
91253731 GAGCCATTAACGGGAAGCTCA
1 GAGCCATTAAC-GGAAGCTCA
91253752 CAAAAAACCT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
48 33 0.54
49 19 0.31
50 9 0.15
ACGTcount: A:0.34, C:0.24, G:0.27, T:0.15
Consensus pattern (48 bp):
GAGCCATTAACGGAAGCTCATGCGAGCCATATAACAGGAAGCTCCAAA
Found at i:91253796 original size:26 final size:25
Alignment explanation
Indices: 91253730--91253811 Score: 67
Period size: 26 Copynumber: 3.2 Consensus size: 25
91253720 GAAGCTCCGG
* *
91253730 AGAGCCATTAACGGGAAGCTCACAAA
1 AGAGCTATAAACGGGAAGCTCAC-AA
* * *
91253756 AAACCTTTAAACGGGAAGCTCACAA
1 AGAGCTATAAACGGGAAGCTCACAA
* * *
91253781 AGAGCTATATATCGGGACGCTCA-TA
1 AGAGCTATA-AACGGGAAGCTCACAA
91253806 AGAGCT
1 AGAGCT
91253812 GCGGTGTGTC
Statistics
Matches: 44, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
25 15 0.34
26 29 0.66
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (25 bp):
AGAGCTATAAACGGGAAGCTCACAA
Found at i:91256310 original size:50 final size:51
Alignment explanation
Indices: 91256233--91256354 Score: 174
Period size: 50 Copynumber: 2.4 Consensus size: 51
91256223 GACCATGGCA
* * *
91256233 ACAAGTGATAAGTGATAGGTTCGGCTACACTTATCTGATTAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
91256284 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
91256334 ACAACTGAAAAGTGGTAGCTT
1 ACAAGTGATAAGTGATAGCTT
91256355 TGGTTACCTG
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
50 46 0.73
51 17 0.27
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:91256377 original size:31 final size:31
Alignment explanation
Indices: 91256339--91256485 Score: 215
Period size: 31 Copynumber: 4.7 Consensus size: 31
91256329 AAATGACAAC
*
91256339 TGAAAAGTGGTAGCTTTGGTTACCTGATCAG
1 TGAAAAGTGGTAGCTTTGGCTACCTGATCAG
91256370 TGAAAAGTGGTAGCTTCT-GCTACCTGATCAG
1 TGAAAAGTGGTAGCTT-TGGCTACCTGATCAG
**
91256401 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTTGGCTACCTGATCAG
* *
91256432 TGAAAAATGGTAGCTCTGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTTGGCTACCTGATCAG
* *
91256463 TGAATAGTGGTAGCTTCGGCTAC
1 TGAAAAGTGGTAGCTTTGGCTAC
91256486 AAGTGACAAG
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
31 104 0.99
32 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTTGGCTACCTGATCAG
Found at i:91256662 original size:49 final size:48
Alignment explanation
Indices: 91256562--91256723 Score: 189
Period size: 49 Copynumber: 3.5 Consensus size: 48
91256552 GCTACTGTAA
* **
91256562 AAGACCATATCTGGAATATGGCATC-AT-TGA-GATATGTGATTCGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATAT-ATGATATGTGATTCGTGT
* * *
91256608 AAGACCATAGTTGGGCTATGGTATCGATATGTGATATGTGATTACGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATATATGATATGTGATT-CGTGT
91256657 AAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTGT
1 AAGACCATAGCTGGGCTATGGCATCGATATATGATATGTGATTCGTGT
91256699 AAGACCATAGCTGGGCTATGGCATC
1 AAGACCATAGCTGGGCTATGGCATC
91256724 ATTATGTGAA
Statistics
Matches: 103, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
42 29 0.28
44 1 0.01
45 1 0.01
46 21 0.20
47 2 0.02
48 13 0.13
49 36 0.35
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (48 bp):
AAGACCATAGCTGGGCTATGGCATCGATATATGATATGTGATTCGTGT
Found at i:91256699 original size:42 final size:43
Alignment explanation
Indices: 91256604--91256767 Score: 163
Period size: 42 Copynumber: 3.7 Consensus size: 43
91256594 TATGTGATTC
* * *
91256604 GTGTAAGACCATAGTTGGGCTATGGTATCGATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA-T
*
91256651 ACGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
91256695 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* * **
91256737 GTGTAAAACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
91256768 GAAAACGAAG
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 63 0.62
43 1 0.01
44 6 0.06
45 2 0.02
47 1 0.01
49 28 0.27
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:91259396 original size:25 final size:25
Alignment explanation
Indices: 91259345--91259396 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
91259335 CAATTTGATC
* * *
91259345 AAATAAATTATTAAAAAATTCATAA
1 AAATAAAATATTAAAAAATACAGAA
* *
91259370 AAATAAAATATTTAAAAATAGAGAA
1 AAATAAAATATTAAAAAATACAGAA
91259395 AA
1 AA
91259397 TTGGTTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (25 bp):
AAATAAAATATTAAAAAATACAGAA
Found at i:91263858 original size:40 final size:40
Alignment explanation
Indices: 91263807--91263882 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
91263797 ACACCATGTA
* * *
91263807 GGGATAAAATCGACCTACCCATCCCTGCACACCATATATG
1 GGGATAAAATCGACCCACCCAACCCTACACACCATATATG
* *
91263847 GGGATATAATCGACCCATCCAACCCTACACACCATA
1 GGGATAAAATCGACCCACCCAACCCTACACACCATA
91263883 AGGTACCGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.34, C:0.34, G:0.13, T:0.18
Consensus pattern (40 bp):
GGGATAAAATCGACCCACCCAACCCTACACACCATATATG
Found at i:91265977 original size:5 final size:6
Alignment explanation
Indices: 91265950--91265984 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
91265940 CAAATAATTT
91265950 AAATAAA AAATAA AAACTAA AAATAA AAATAA AAA
1 AAAT-AA AAATAA AAA-TAA AAATAA AAATAA AAA
91265985 ACATATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 17 0.63
7 10 0.37
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:91265985 original size:13 final size:13
Alignment explanation
Indices: 91265950--91265985 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
91265940 CAAATAATTT
91265950 AAATAAAAAATAA
1 AAATAAAAAATAA
91265963 AAACT-AAAAATAA
1 AAA-TAAAAAATAA
91265976 AAATAAAAAA
1 AAATAAAAAA
91265986 CATATAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 1 0.05
13 19 0.90
14 1 0.05
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (13 bp):
AAATAAAAAATAA
Found at i:91266045 original size:9 final size:9
Alignment explanation
Indices: 91266004--91266072 Score: 66
Period size: 9 Copynumber: 7.6 Consensus size: 9
91265994 TTTATACAAA
*
91266004 TAATTCGAT
1 TAATTCGGT
* *
91266013 TAATTTGGG
1 TAATTCGGT
*
91266022 TAATTCGGGG
1 TAATTC-GGT
91266032 TAATTCGGT
1 TAATTCGGT
* *
91266041 CAATTCGAT
1 TAATTCGGT
*
91266050 TAATTCAGT
1 TAATTCGGT
91266059 TAATTCGGT
1 TAATTCGGT
91266068 TAATT
1 TAATT
91266073 TTATACTTAT
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
9 39 0.81
10 9 0.19
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (9 bp):
TAATTCGGT
Found at i:91271606 original size:36 final size:36
Alignment explanation
Indices: 91271559--91271627 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
91271549 ATTAGGCTTG
91271559 AGATACTAAGAAATTCGATAAAAATTGATTTTTTTT
1 AGATACTAAGAAATTCGATAAAAATTGATTTTTTTT
*
91271595 AGATACTAAGAAATTTGATAAAAATTGATTTTT
1 AGATACTAAGAAATTCGATAAAAATTGATTTTT
91271628 GAGTATAGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (36 bp):
AGATACTAAGAAATTCGATAAAAATTGATTTTTTTT
Found at i:91273426 original size:21 final size:21
Alignment explanation
Indices: 91273402--91273466 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
91273392 TAGCCTTCGG
91273402 GCTTCCGTTTAGCACTTGTGT
1 GCTTCCGTTTAGCACTTGTGT
*
91273423 GCTTCAG-TTAGC-CTTCG-G-
1 GCTTCCGTTTAGCACTT-GTGT
*
91273441 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTGTGT
91273462 GCTTC
1 GCTTC
91273467 AACTAGACTT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
18 6 0.17
19 9 0.25
20 10 0.28
21 11 0.31
ACGTcount: A:0.11, C:0.26, G:0.23, T:0.40
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTGTGT
Found at i:91273427 original size:39 final size:39
Alignment explanation
Indices: 91273384--91273484 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
91273374 ACTCTGATGA
*
91273384 GCTTCAGCTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGCTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
91273423 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGCTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
91273462 GCTTCAACTAGACTTCGGGCTTC
1 GCTTCAGCTAGCCTTCGGGCTTC
91273485 AGATCATGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.13, C:0.28, G:0.24, T:0.36
Consensus pattern (39 bp):
GCTTCAGCTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:91275571 original size:48 final size:48
Alignment explanation
Indices: 91275519--91275689 Score: 170
Period size: 48 Copynumber: 3.5 Consensus size: 48
91275509 GTTGTGAGAA
* ***
91275519 CTAGTGTAAGACCATGTCTGGGATATGGCATCGGTA-TTGA-TATGTGCG
1 CTAGTGTAA-ACCATGTCTGGGACATGGCATCGG-ACCACATTATGTGCG
* *
91275567 CTAGTGTATAACCATGTCTGGGACATGGCAT-AGACCACATTATGTGTG
1 CTAGTGTA-AACCATGTCTGGGACATGGCATCGGACCACATTATGTGCG
* *
91275615 CTAGTGTAAAACCATGTCTGGGACATGGCATCGG-CCACATTATGAGAG
1 CTAGTGT-AAACCATGTCTGGGACATGGCATCGGACCACATTATGTGCG
* * *
91275663 CTAGTATAAGACCATATCTAGGACATG
1 CTAGTGTAA-ACCATGTCTGGGACATG
91275690 TTATCGGCAT
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
46 1 0.01
47 4 0.04
48 97 0.92
49 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (48 bp):
CTAGTGTAAACCATGTCTGGGACATGGCATCGGACCACATTATGTGCG
Found at i:91277807 original size:31 final size:31
Alignment explanation
Indices: 91277764--91277834 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
91277754 TTACTGGGCC
*
91277764 GAAGGCTTTTCATAAATCATATCACTGAGCT
1 GAAGCCTTTTCATAAATCATATCACTGAGCT
* *
91277795 GAAGCCTTTTCATAAATCATATCATTGGGCT
1 GAAGCCTTTTCATAAATCATATCACTGAGCT
91277826 GAAGCCTTT
1 GAAGCCTTT
91277835 ACTGTAAACG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (31 bp):
GAAGCCTTTTCATAAATCATATCACTGAGCT
Found at i:91277905 original size:42 final size:42
Alignment explanation
Indices: 91277858--91277949 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
91277848 TGGCCCTTAG
* *** *
91277858 GCCCATTTCAATATCACATGTAATGTTAATGGATGTACGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTACGCAA
*
91277900 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTACGCAA
91277942 GCCCATTT
1 GCCCATTT
91277950 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTACGCAA
Found at i:91278165 original size:26 final size:26
Alignment explanation
Indices: 91278094--91278216 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
91278084 CCTCTTTAAT
* **
91278094 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCAATA
*
91278119 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCAATA
**
91278144 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCAATA
91278170 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCAATA
91278196 AACTAGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTT
91278217 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 32 0.36
26 58 0.64
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (26 bp):
AACTAGGGCATAAGCCCTTTTCAATA
Found at i:91278204 original size:52 final size:51
Alignment explanation
Indices: 91278094--91278216 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
91278084 CCTCTTTAAT
* *
91278094 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
91278144 AACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCA-AAGCCCTTTTCAATA
91278196 AACTAGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTT
91278217 GCACTTCCTC
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 9 0.13
51 24 0.35
52 36 0.52
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (51 bp):
AACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
Found at i:91279119 original size:27 final size:27
Alignment explanation
Indices: 91279024--91279102 Score: 124
Period size: 27 Copynumber: 2.9 Consensus size: 27
91279014 TATTCTTTAT
*
91279024 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCAC
*
91279051 TTTACCCTTCAGGGGCTTTACGGTCAC
1 TTTACCCTACAGGGGCTTTACGGTCAC
91279078 TTTACCCTACAGGGGCTTTACGGTC
1 TTTACCCTACAGGGGCTTTACGGTC
91279103 TTTTTACCTA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 47 0.98
28 1 0.02
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.32
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCAC
Found at i:91279194 original size:27 final size:27
Alignment explanation
Indices: 91279141--91279493 Score: 214
Period size: 27 Copynumber: 13.0 Consensus size: 27
91279131 TTTCATTCTA
* * * * *
91279141 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
91279168 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** *
91279195 CAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTATAAA-T
* *
91279224 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
* *
91279251 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * * *
91279278 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
91279304 CCAGTGGTATTTTGGTAGTTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* * *
91279331 CTAGGGATATTTTGGGAATTTTACAAATT
1 CAAGGG-TATTTTGGTAATTTTATAAA-T
* * * *
91279360 GAA-GGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * *
91279386 CAATGGTATTTTAGTAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
91279412 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAT
* * *
91279439 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
91279466 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
91279493 C
1 C
91279494 GAGGTTAAAA
Statistics
Matches: 258, Mismatches: 56, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
26 29 0.11
27 200 0.78
28 15 0.06
29 14 0.05
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:91279353 original size:81 final size:80
Alignment explanation
Indices: 91279254--91279486 Score: 322
Period size: 81 Copynumber: 2.9 Consensus size: 80
91279244 TGTAAATCAG
* *
91279254 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTTAG
*
91279319 TAGTTTTACAAACTA
66 TAATTTTACAAACTA
* * *
91279334 GGGATATTTTGGGAATTTTACAAATTGAAGGTATTTCGGTAATTTTACAAACCAATGGTATTTTA
1 GGG-TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTTA
*
91279399 GTAATTTTACAGACTA
65 GTAATTTTACAAACTA
** * * *** *
91279415 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTTAG
91279480 TAATTTT
66 TAATTTT
91279487 GTAAATCGAG
Statistics
Matches: 136, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
80 63 0.46
81 73 0.54
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTTAG
TAATTTTACAAACTA
Found at i:91279495 original size:54 final size:54
Alignment explanation
Indices: 91279141--91279497 Score: 256
Period size: 54 Copynumber: 6.6 Consensus size: 54
91279131 TTTCATTCTA
* * * * * * **
91279141 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAAC
* *** * * * ** *
91279195 CAATGGTATTTCCATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-TCGAGGGTATTT-TGGTAATTTTACAAAC
* * * *
91279251 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAAC
* * * *
91279305 C-AGTGGTATTTTGGTAGTTTTACAAA-CTAGGGATATTTTGGGAATTTTACAAATT
1 CAAG-GGTATTTTGGTAATTTTACAAATCGAGGG-TATTTTGGTAATTTTACAAA-C
* * * * * * *
91279360 GAA-GGTATTTCGGTAATTTTACAAACCAATGGTATTTTAGTAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAAC
* ** **
91279412 CTAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAAC
* **
91279466 CAAGGGTATTTTAGTAATTTTGTAAATCGAGG
1 CAAGGGTATTTTGGTAATTTTACAAATCGAGG
91279498 TTAAAATAGT
Statistics
Matches: 233, Mismatches: 59, Indels: 22
0.74 0.19 0.07
Matches are distributed among these distances:
52 1 0.00
53 44 0.19
54 133 0.57
55 18 0.08
56 36 0.15
57 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAAC
Found at i:91279507 original size:27 final size:27
Alignment explanation
Indices: 91279452--91279607 Score: 143
Period size: 27 Copynumber: 5.8 Consensus size: 27
91279442 GGGTATTTTG
* * ***
91279452 GTAATTTTGTAAACCAAGGGTATTTTA
1 GTAATTCTGTAAATCAAGGGTAAAATA
* * *
91279479 GTAATTTTGTAAATCGAGGTTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAATA
91279506 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAATA
* * **
91279533 GTAATTCTATAAATTAAGGGT-AAACG
1 GTAATTCTGTAAATCAAGGGTAAAATA
** **
91279559 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAATA
* *
91279586 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCAAGGGTA
91279608 CTTTGGTAAT
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 22 0.20
27 89 0.80
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAATA
Found at i:91279535 original size:54 final size:53
Alignment explanation
Indices: 91279452--91279607 Score: 159
Period size: 53 Copynumber: 2.9 Consensus size: 53
91279442 GGGTATTTTG
* * *** * * * *
91279452 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGTTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGT-AAACA
** *
91279506 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATTAAGGGTAAACG
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAACA
** **
91279559 GTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
91279608 CTTTGGTAAT
Statistics
Matches: 84, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
53 46 0.55
54 38 0.45
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (53 bp):
GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAACA
Found at i:91281538 original size:131 final size:130
Alignment explanation
Indices: 91281367--91281947 Score: 546
Period size: 131 Copynumber: 4.4 Consensus size: 130
91281357 CGCGAAATAG
* * ** * * * *
91281367 TGCCCTAACGTGTTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCTCTTTAAAATTC
1 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATCTCTTTAAAATTT
* *
91281432 CACTCATGCCTT-TTAAAAATCCTTTAAAACAAAGGCAATACTCGATGTTTGATAATTCGAGAAT
66 CACTCATG-TTTATTAAAAA-CCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAAT
91281496 CA
129 CA
* * * ***
91281498 TGCCCTATCGTGCTAGGTTGTGACTTCTCGTTTGTTCAAAACAACCGAATAT-TCCTTTAGGTTT
1 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATCT-CTTTAAAATT
* * * * *
91281562 TCACTCGTGTTTATTAAAAACCTTCCAAAATGAAGGCAATACTCGGTGTTTGGTAATTCGAGAAT
65 TCACTCATGTTTATTAAAAACCTT-TAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAAT
91281627 CA
129 CA
* ***
91281629 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAACCGAATAATC-CTTTAGGTTT
1 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAAT-ATCTCTTTAAAATT
* * *
91281693 TCATTCGTGTTTATTAAAAA-CTTTCCAAAACGAAGGCAATACTCGATGTTTGATAATTCGGGAA
65 TCACTCATGTTTATTAAAAACCTTT--AAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAA
*
91281757 TCG
128 TCA
* * * * * **
91281760 TGCCCTAACGTGTTGAGTTGTGATTTCTCGTTTTTTCAAAACAATCGAAGAT-TCCTTCGAAATT
1 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATCT-CTTTAAAATT
* * * ** *
91281824 TCACTCACGTTT-TCTAAAAACCCTTTAAAACGAAGGCGATATTCGATGTTTGGCAATTCGGGAA
65 TCACTCATGTTTAT-TAAAAA-CCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAG-A
91281888 AT-A
127 ATCA
* * ** * ** * *
91281891 GTACCCTATCGTGTTGGGTTGCAATTTCCCACTTGCTCAAAATAATCGAATATCTCT
1 -TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATCTCT
91281948 CCGGGATTTC
Statistics
Matches: 374, Mismatches: 61, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
130 13 0.03
131 309 0.83
132 47 0.13
133 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (130 bp):
TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATCTCTTTAAAATTT
CACTCATGTTTATTAAAAACCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCA
Found at i:91289086 original size:41 final size:41
Alignment explanation
Indices: 91288981--91289063 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
91288971 CATTTCATTC
91288981 ATAACCATACAAATGATTACTTTCAGATTCTTTTATTCTTG
1 ATAACCATACAAATGATTACTTTCAGATTCTTTTATTCTTG
*
91289022 ATAACCATACAAATGATTACTTTCGGATTCTTTTATTCTTG
1 ATAACCATACAAATGATTACTTTCAGATTCTTTTATTCTTG
91289063 A
1 A
91289064 AACATTCTTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.43
Consensus pattern (41 bp):
ATAACCATACAAATGATTACTTTCAGATTCTTTTATTCTTG
Found at i:91293579 original size:44 final size:44
Alignment explanation
Indices: 91293514--91293871 Score: 448
Period size: 44 Copynumber: 8.1 Consensus size: 44
91293504 ACGAATCCCA
* *
91293514 CAGATTTGGCGTCTTTGTATTGGCGGAGAGTAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
*
91293558 CAGATTTGGCGTCTCTATATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * * *
91293602 AAGATTTGGGGTCTCTGTATTGTCAGAGGGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
91293646 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAA
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
91293690 CAGATTTGGCGTCTATATATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
91293734 CAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * ** * * *
91293778 CAAATTTGACATCTCTGTAGCGACGGAGAGTAGATCGAAGACAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * * *
91293822 CAGATTTGGCATCTCTGTATTGGCAGG-GAGCATATCAAAAATAA
1 CAGATTTGGCGTCTCTGTATTGGC-GGAGAGCAGATCGAAGATAG
91293866 CAGATT
1 CAGATT
91293872 GGTGTTCCCG
Statistics
Matches: 269, Mismatches: 44, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
44 267 0.99
45 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
Found at i:91293751 original size:132 final size:132
Alignment explanation
Indices: 91293514--91293871 Score: 520
Period size: 132 Copynumber: 2.7 Consensus size: 132
91293504 ACGAATCCCA
*
91293514 CAGATTTGGCGTCTTTGTATTGGCGGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTCTATATT
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTCTATATT
* *
91293579 GGCGGAGAGCAGATCGAAGATAGAAGATTTGGGGTCTCTGTATTGTCAGAGGGCAGATCGAAGAT
66 GGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGAT
91293644 AG
131 AG
* * * *
91293646 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTATATATT
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTCTATATT
91293711 GGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGAT
66 GGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGAT
91293776 AG
131 AG
* * * ** * * * *
91293778 CAAATTTGACATCTCTGTAGCGACGGAGAGTAGATCGAAGACAGCAGATTTGGCATCTCTGTATT
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTCTATATT
* * * *
91293843 GGCAGG-GAGCATATCAAAAATAACAGATT
66 GGC-GGAGAGCAGATCGAAGATAGCAGATT
91293872 GGTGTTCCCG
Statistics
Matches: 201, Mismatches: 24, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
132 199 0.99
133 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (132 bp):
CAGATTTGGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTCTATATT
GGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGAT
AG
Found at i:91296986 original size:131 final size:129
Alignment explanation
Indices: 91296893--91297623 Score: 914
Period size: 131 Copynumber: 5.6 Consensus size: 129
91296883 CTCATGCCTT
*
91296893 TTAAAAATCCTTTAAAACAAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGT
1 TTAAAAA-CCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGT
*
91296958 GCTGGGTTGTGACTTCTCGTTTGTTCAAAACAACCGAATATTCCTTTAGGTTTTCACTCGTGTTT
65 GCTGGGTTGTGATTTCTCGTTTGTTCAAAACAA-CGAATATTCCTTTAGGTTTTCACTCGTGTTT
91297023 A
129 A
* *
91297024 TTAAAAACCTTCCAAAACGAAGGCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTATCGT
1 TTAAAAACCTT-TAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGT
* * *
91297089 GATGGGTTGTGATTTCTCGTTTATTCAAAACAACTGAATATTCCTTTAGGTTTTCATTCGTGTTT
65 GCTGGGTTGTGATTTCTCGTTTGTTCAAAACAAC-GAATATTCCTTTAGGTTTTCACTCGTGTTT
91297154 A
129 A
* * *
91297155 TTAAAAA-CTTTCCAAAACGAAGGTAATACTCAATGTTTGAAAATTCGAGAATCATGCCCTATCG
1 TTAAAAACCTTT--AAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCG
* * * * *
91297219 TGTTGAGTTGTGATTTTTCGTTTGTTCAAAACAACCAAATATTCCTTTAGGTTTTCATTCGTGTT
64 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAA-CGAATATTCCTTTAGGTTTTCACTCGTGTT
91297284 TA
128 TA
* *
91297286 TTAAAAA-CTTTCCAAAACGAAGGCAATACTCGATGTTTGATAATTTGAGAATCATGCCCAATCG
1 TTAAAAACCTTT--AAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCG
91297350 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAACTGAATATTCCTTTAGGTTTTCACTCGTGTT
64 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAAC-GAATATTCCTTTAGGTTTTCACTCGTGTT
91297415 TA
128 TA
* * * * * *
91297417 TTAAAAACCTTCCAAAAACAAAGACAATACTCGGTGTTTGATAATTCGAGAATCGTGCCCTAACG
1 TTAAAAACCTT--TAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCG
* * * * ** * *
91297482 TGTTGGGTTGTGATTTCTCGTTTTTTCAAAACAATCGAAGATTCCTTCGAAATTTCTCTCACGT-
64 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAA-CGAATATTCCTT-TAGGTTT-TCACTCGTG
91297546 TTT-
126 TTTA
* * * * ** * *
91297549 CTAAAAATCCTTTAAAACGAATGCGATATTCGATGTTTGGCAATTCGGGAAAT-AGTACCCTATC
1 TTAAAAA-CCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAG-AATCA-TGCCCTATC
91297613 GTGCTGGGTTG
63 GTGCTGGGTTG
91297624 CAATTTCCCA
Statistics
Matches: 527, Mismatches: 58, Indels: 29
0.86 0.09 0.05
Matches are distributed among these distances:
130 9 0.02
131 384 0.73
132 116 0.22
133 12 0.02
134 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (129 bp):
TTAAAAACCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGTG
CTGGGTTGTGATTTCTCGTTTGTTCAAAACAACGAATATTCCTTTAGGTTTTCACTCGTGTTTA
Found at i:91297301 original size:262 final size:263
Alignment explanation
Indices: 91296906--91297515 Score: 1006
Period size: 262 Copynumber: 2.3 Consensus size: 263
91296896 AAAATCCTTT
* *
91296906 AAAACAAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGAC
1 AAAACAAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGTGTTGGGTTGTGAT
*
91296971 TTCTCGTTTGTTCAAAACAACCGAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTTC
66 TTCTCGTTTGTTCAAAACAACCAAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTTC
* *
91297036 CAAAACGAAGGCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTATCGTGATGGGTTGTGA
131 CAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCAATCGTGATGGGTTGTGA
* *
91297101 TTTCTCGTTTATTCAAAACAACTGAATATTCCTTTAGGTTTTCATTCGTGTTTATTAAAAACTTT
196 TTTCTCGTTTATTCAAAACAACTGAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTT
91297166 CC-
261 CCA
* * * * *
91297168 AAAACGAAGGTAATACTCAATGTTTGAAAATTCGAGAATCATGCCCTATCGTGTTGAGTTGTGAT
1 AAAACAAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGTGTTGGGTTGTGAT
* * *
91297233 TTTTCGTTTGTTCAAAACAACCAAATATTCCTTTAGGTTTTCATTCGTGTTTATTAAAAACTTTC
66 TTCTCGTTTGTTCAAAACAACCAAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTTC
* *
91297298 CAAAACGAAGGCAATACTCGATGTTTGATAATTTGAGAATCATGCCCAATCGTGCTGGGTTGTGA
131 CAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCAATCGTGATGGGTTGTGA
*
91297363 TTTCTCGTTTGTTCAAAACAACTGAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTT
196 TTTCTCGTTTATTCAAAACAACTGAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTT
91297428 CCA
261 CCA
* * * *
91297431 AAAACAAAGACAATACTCGGTGTTTGATAATTCGAGAATCGTGCCCTAACGTGTTGGGTTGTGAT
1 AAAACAAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGTGTTGGGTTGTGAT
*
91297496 TTCTCGTTTTTTCAAAACAA
66 TTCTCGTTTGTTCAAAACAA
91297516 TCGAAGATTC
Statistics
Matches: 318, Mismatches: 29, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
262 244 0.77
263 74 0.23
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (263 bp):
AAAACAAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGTGTTGGGTTGTGAT
TTCTCGTTTGTTCAAAACAACCAAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTTC
CAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCAATCGTGATGGGTTGTGA
TTTCTCGTTTATTCAAAACAACTGAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTT
CCA
Found at i:91303036 original size:22 final size:23
Alignment explanation
Indices: 91303011--91303056 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
91303001 CAACCAATCC
* *
91303011 AATTCA-ACATATTTTTAAGATA
1 AATTCATACATATTTATAAAATA
*
91303033 AATTCATGCATATTTATAAAATA
1 AATTCATACATATTTATAAAATA
91303056 A
1 A
91303057 CGTCATCACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (23 bp):
AATTCATACATATTTATAAAATA
Found at i:91303062 original size:23 final size:23
Alignment explanation
Indices: 91303018--91303062 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
91303008 TCCAATTCAA
* * *
91303018 CATATTTTTAAGATAAATTCATG
1 CATATTTATAAAATAAAGTCATG
*
91303041 CATATTTATAAAATAACGTCAT
1 CATATTTATAAAATAAAGTCAT
91303063 CACATACCCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (23 bp):
CATATTTATAAAATAAAGTCATG
Found at i:91308754 original size:48 final size:47
Alignment explanation
Indices: 91308682--91308966 Score: 255
Period size: 48 Copynumber: 6.0 Consensus size: 47
91308672 GCCATTTGGG
* * *
91308682 TGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA
* * * * *
91308730 CGATATGAGGGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTAA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA
* * * * *
91308778 TGTTGTGAGAACTAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * *
91308825 TTGATATGTGTGCTAGTGTAAAACCATGTCTGGGACATGGCATCGGCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * * * *
91308873 TTGAGACGAGAGCTAGTATAAGACCATGTCTGGGATATGGCATCAGCC
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * * *
91308921 TCGACATGTGAACCAGTGTAAGACCATGTTTGGAACATGACATCGG
1 T-GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
91308967 TAATTCAGCC
Statistics
Matches: 192, Mismatches: 43, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
47 2 0.01
48 190 0.99
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
Found at i:91308863 original size:96 final size:96
Alignment explanation
Indices: 91308695--91308970 Score: 322
Period size: 96 Copynumber: 2.9 Consensus size: 96
91308685 TATGTGTGCC
* * *
91308695 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-CGATATGAGGGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGATATGTGAGCCAGTGTAAGACCATGTT
* *
91308759 TGGAACATGGCATCGGTAATGTTG-TGAGAACT
65 TGGAACATGGCATCGGTAATG-AGACGAGAACT
* * * * * *
91308791 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGTGCTAGTGTAAAACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCCAGTGTAAGACCATGTTT
* * * *
91308856 GGGACATGGCATCGGCATTGAGACGAGAGCT
66 GGAACATGGCATCGGTAATGAGACGAGAACT
* * * * * *
91308887 AGTATAAGACCATGTCTGGGATATGGCATCAGCCTCGACATGTGAACCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCCAGTGTAAGACCATGTTT
*
91308952 GGAACATGACATCGGTAAT
66 GGAACATGGCATCGGTAAT
91308971 TCAGCCTCTT
Statistics
Matches: 148, Mismatches: 30, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
95 3 0.02
96 145 0.98
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCCAGTGTAAGACCATGTTT
GGAACATGGCATCGGTAATGAGACGAGAACT
Found at i:91308942 original size:144 final size:144
Alignment explanation
Indices: 91308682--91308966 Score: 324
Period size: 144 Copynumber: 2.0 Consensus size: 144
91308672 GCCATTTGGG
* * * * * *
91308682 TGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAGGGCCAGTG
1 TGATATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCACGAGACGAGAGCCAGTA
* * *** *
91308747 TAAGACCATGTTTGGAACATGGCATCGGTAATGTTGTGAGAACTAGTGTAAGACCATGTCTAGG-
66 TAAGACCATGTCTGGAACATGGCATCAGTAATGACATGAGAACCAGTGTAAGACCATGT-TAGGA
*
91308811 ACATGGCATCGGCAT
130 ACATGACATCGGCAT
* * *
91308826 TGATATGTGTGCTAGTGTAAAACCATGTCTGGGACATGGCATCGG-CATTGAGACGAGAGCTAGT
1 TGATATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCA-CGAGACGAGAGCCAGT
* * ** * *
91308890 ATAAGACCATGTCTGGGATATGGCATCAG-CCTCGACATGTGAACCAGTGTAAGACCATGTTTGG
65 ATAAGACCATGTCTGGAACATGGCATCAGTAAT-GACATGAGAACCAGTGTAAGACCATGTTAGG
91308954 AACATGACATCGG
129 AACATGACATCGG
91308967 TAATTCAGCC
Statistics
Matches: 116, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
143 6 0.05
144 110 0.95
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (144 bp):
TGATATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCACGAGACGAGAGCCAGTA
TAAGACCATGTCTGGAACATGGCATCAGTAATGACATGAGAACCAGTGTAAGACCATGTTAGGAA
CATGACATCGGCAT
Found at i:91309559 original size:28 final size:28
Alignment explanation
Indices: 91309527--91309585 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
91309517 CAAGTCGATT
91309527 GATATTCACCCAACATAGCGATGAAATC
1 GATATTCACCCAACATAGCGATGAAATC
91309555 GATATTCACCCAACATAGCGATGAAATC
1 GATATTCACCCAACATAGCGATGAAATC
91309583 GAT
1 GAT
91309586 GACTAAACGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (28 bp):
GATATTCACCCAACATAGCGATGAAATC
Found at i:91310022 original size:15 final size:15
Alignment explanation
Indices: 91310002--91310030 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
91309992 ACGCATAATA
91310002 ATACTAAATATATAC
1 ATACTAAATATATAC
91310017 ATACTAAATATATA
1 ATACTAAATATATA
91310031 TACATAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
ATACTAAATATATAC
Found at i:91310126 original size:32 final size:32
Alignment explanation
Indices: 91310085--91310148 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
91310075 ATAACATAGA
91310085 AAATATATTTATATACTAATAATAATAATAAT
1 AAATATATTTATATACTAATAATAATAATAAT
91310117 AAATATATTTATATACTAATAATAATAATAAT
1 AAATATATTTATATACTAATAATAATAATAAT
91310149 GAAAAGGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (32 bp):
AAATATATTTATATACTAATAATAATAATAAT
Found at i:91311419 original size:18 final size:18
Alignment explanation
Indices: 91311376--91311427 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
91311366 GATAAATAGT
91311376 AATAATAACAATAATATA
1 AATAATAACAATAATATA
* * *
91311394 AATGATAAC-ATACATGTG
1 AATAATAACAATA-ATATA
*
91311412 AATAATAATAATAATA
1 AATAATAACAATAATA
91311428 GCAATAATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (18 bp):
AATAATAACAATAATATA
Found at i:91312570 original size:20 final size:20
Alignment explanation
Indices: 91312545--91312583 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
91312535 AAAATTTTGG
*
91312545 GTTTAATTTGTTGGGTTTTA
1 GTTTAATGTGTTGGGTTTTA
91312565 GTTTAATGTGTTGGGTTTT
1 GTTTAATGTGTTGGGTTTT
91312584 GGGGTTTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.00, G:0.28, T:0.59
Consensus pattern (20 bp):
GTTTAATGTGTTGGGTTTTA
Found at i:91312603 original size:22 final size:21
Alignment explanation
Indices: 91312578--91312622 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
91312568 TAATGTGTTG
* *
91312578 GGTTTTGGGGTTTAGTATGAAA
1 GGTTTTGGAGTTTAATAT-AAA
91312600 GGTTTTGGAGTTTAATATAAA
1 GGTTTTGGAGTTTAATATAAA
91312621 GG
1 GG
91312623 GGCCAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (21 bp):
GGTTTTGGAGTTTAATATAAA
Found at i:91318753 original size:15 final size:15
Alignment explanation
Indices: 91318703--91318755 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
91318693 ATTATAAGGA
91318703 AAAAGAATAA-AATAT
1 AAAAGAA-AATAATAT
91318718 AAAA-AAAATAA-A-
1 AAAAGAAAATAATAT
*
91318730 AAGAG-AAATAATAT
1 AAAAGAAAATAATAT
91318744 AAAAGAAAATAA
1 AAAAGAAAATAA
91318756 AAGAATTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
12 9 0.29
13 4 0.13
14 8 0.26
15 10 0.32
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (15 bp):
AAAAGAAAATAATAT
Found at i:91318769 original size:27 final size:26
Alignment explanation
Indices: 91318702--91318770 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
91318692 AATTATAAGG
91318702 AAAAAGAAT-AAAATATAAAAAAAAT
1 AAAAAGAATAAAAATATAAAAAAAAT
*
91318727 AAAAAGAGA-AATAATATAAAAGAAAAT
1 AAAAAGA-ATAAAAATATAAAA-AAAAT
91318754 -AAAAGAATTAAAAATAT
1 AAAAAGAA-TAAAAATAT
91318771 TTTTTAAGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
25 8 0.22
26 17 0.46
27 12 0.32
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.17
Consensus pattern (26 bp):
AAAAAGAATAAAAATATAAAAAAAAT
Found at i:91319076 original size:23 final size:23
Alignment explanation
Indices: 91319050--91319097 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
91319040 AAAGAAGGTA
91319050 TAGTTTAGGTTAAAGTGAAAATG
1 TAGTTTAGGTTAAAGTGAAAATG
*
91319073 TAGTTTAGGTTTAAGTGAAAATG
1 TAGTTTAGGTTAAAGTGAAAATG
91319096 TA
1 TA
91319098 TTCATTGTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (23 bp):
TAGTTTAGGTTAAAGTGAAAATG
Found at i:91322568 original size:19 final size:20
Alignment explanation
Indices: 91322546--91322583 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
91322536 AATTAAAAAA
91322546 TTAAAA-AAAAATAAATTCC
1 TTAAAATAAAAATAAATTCC
*
91322565 TTAAAATAAAGATAAATTC
1 TTAAAATAAAAATAAATTC
91322584 AATCGAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.29
Consensus pattern (20 bp):
TTAAAATAAAAATAAATTCC
Found at i:91335949 original size:14 final size:15
Alignment explanation
Indices: 91335924--91335952 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91335914 AAAAAAATAA
91335924 ATTTTTTAATAAATT
1 ATTTTTTAATAAATT
91335939 ATTTTTT-ATAAATT
1 ATTTTTTAATAAATT
91335953 TTTAATGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTTTTTAATAAATT
Found at i:91335978 original size:25 final size:23
Alignment explanation
Indices: 91335950--91336010 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 23
91335940 TTTTTTATAA
*
91335950 ATTTTTAATGGTTTTTAATAAATTT
1 ATTTTTAAT--TTTTTAAAAAATTT
91335975 ATTTTTATATTTTTTAAAAAATTT
1 ATTTTTA-ATTTTTTAAAAAATTT
91335999 ATGGTTTTAATT
1 AT--TTTTAATT
91336011 AATTTCTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
24 15 0.47
25 10 0.31
26 7 0.22
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.61
Consensus pattern (23 bp):
ATTTTTAATTTTTTAAAAAATTT
Found at i:91335981 original size:35 final size:34
Alignment explanation
Indices: 91335926--91335991 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 34
91335916 AAAAATAAAT
91335926 TTTTTAATAAATTATTTTTTATAAATTTTTAATGG
1 TTTTTAATAAATTATTTTTTAT-AATTTTTAATGG
*
91335961 TTTTTAATAAATT-TATTTTTATATTTTTTAA
1 TTTTTAATAAATTAT-TTTTTATAATTTTTAA
91335992 AAAATTTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 9 0.31
35 20 0.69
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (34 bp):
TTTTTAATAAATTATTTTTTATAATTTTTAATGG
Found at i:91336984 original size:20 final size:21
Alignment explanation
Indices: 91336937--91336985 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 21
91336927 CATTCTTTTT
*
91336937 TATTATAAAATAAATTAAAATA
1 TATTA-AAAATAAATTAAAAAA
91336959 TATTAAAAAT-AATTAAATAAA
1 TATTAAAAATAAATTAAA-AAA
91336980 T-TTAAA
1 TATTAAA
91336986 TTTAAATTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 12 0.48
21 8 0.32
22 5 0.20
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
TATTAAAAATAAATTAAAAAA
Found at i:91341862 original size:71 final size:71
Alignment explanation
Indices: 91341637--91341888 Score: 301
Period size: 71 Copynumber: 3.5 Consensus size: 71
91341627 CATTCCTGAT
* * * * * *
91341637 CCATGTACTTCACAAGGTTTGAACCTAAGATCTCTATACTGGAAATC-AGTTTAACTCTCTGTCA
1 CCATGAACTTCCCAGGGTCTGAACCTAAGATCTCTAAATTGGAAATCGA-TTTAA--CTCTGTCA
*
91341701 TCCTCTAAC
63 TACTCTAAC
* * *
91341710 CCATGAACTTCCCAGGGTCTAAACCTAATATCTCTAAATTGGAAATCGATTTAACTCAGTCATAC
1 CCATGAACTTCCCAGGGTCTGAACCTAAGATCTCTAAATTGGAAATCGATTTAACTCTGTCATAC
91341775 TCTAAC
66 TCTAAC
* *
91341781 CCATGAACTTCCCAGGGTCTGAACCTAATATCTCTAAATTGGAAATCGATTTAACTCTGTCATTC
1 CCATGAACTTCCCAGGGTCTGAACCTAAGATCTCTAAATTGGAAATCGATTTAACTCTGTCATAC
*
91341846 TCTAAA
66 TCTAAC
** * * *
91341852 TTATGTACTT-CCAGGGTTTGAACCTAAGATTTCTAAA
1 CCATGAACTTCCCAGGGTCTGAACCTAAGATCTCTAAA
91341889 AGTCACATCA
Statistics
Matches: 158, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
70 24 0.15
71 89 0.56
73 44 0.28
74 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.33
Consensus pattern (71 bp):
CCATGAACTTCCCAGGGTCTGAACCTAAGATCTCTAAATTGGAAATCGATTTAACTCTGTCATAC
TCTAAC
Found at i:91343849 original size:19 final size:19
Alignment explanation
Indices: 91343825--91343861 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
91343815 TTAATACTGC
91343825 TAATCATCATGCCTGATTT
1 TAATCATCATGCCTGATTT
91343844 TAATCATCATGCCTGATT
1 TAATCATCATGCCTGATT
91343862 CTTTCTACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.41
Consensus pattern (19 bp):
TAATCATCATGCCTGATTT
Found at i:91345249 original size:22 final size:24
Alignment explanation
Indices: 91345224--91345278 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
91345214 TTTAGGCTCG
91345224 TTTATATTA-TTATTTAATTTT-T
1 TTTATATTATTTATTTAATTTTAT
* * *
91345246 TTTAAAATATTTATTTTATTTTAT
1 TTTATATTATTTATTTAATTTTAT
91345270 TTTAATATT
1 TTT-ATATT
91345279 TCATAATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 7 0.28
23 11 0.44
24 4 0.16
25 3 0.12
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTATATTATTTATTTAATTTTAT
Found at i:91347114 original size:35 final size:35
Alignment explanation
Indices: 91346995--91347125 Score: 136
Period size: 35 Copynumber: 3.6 Consensus size: 35
91346985 CCTCATTGAA
* * ***
91346995 ATACCATACCTACATTTTACAACTCGGTATGGGCA
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
* **
91347030 ATGCCATACCTACATTTCTTAACTCAGTATGGATTTG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--TG
*
91347067 ATAATACCATACCTACATATCACAACTCAGTATGGATG
1 ---ATACCATACCTACATTTCACAACTCAGTATGGATG
91347105 ATACCATACCTACATTTCACA
1 ATACCATACCTACATTTCACA
91347126 CTTTTCCATG
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
35 47 0.60
38 2 0.03
40 29 0.37
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:91354558 original size:35 final size:35
Alignment explanation
Indices: 91354439--91354569 Score: 127
Period size: 35 Copynumber: 3.6 Consensus size: 35
91354429 CCTCATTGAA
* * ***
91354439 ATACCATACCTACATTTTACAACTCGGTATGGGCA
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
* ** *
91354474 ATGCCATACCTACATTTCTTAACTCAGAATGGATTTG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--TG
*
91354511 ATAATACCATACCTACATATCACAACTCAGTATGGATG
1 ---ATACCATACCTACATTTCACAACTCAGTATGGATG
91354549 ATACCATACCTACATTTCACA
1 ATACCATACCTACATTTCACA
91354570 CTTTGCCATG
Statistics
Matches: 76, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
35 46 0.61
38 2 0.03
40 28 0.37
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:91357111 original size:9 final size:9
Alignment explanation
Indices: 91357097--91357129 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
91357087 TTTGTGAACT
91357097 TTTTTTAAA
1 TTTTTTAAA
91357106 TTTTTTAAA
1 TTTTTTAAA
91357115 -TTTTTAAA
1 TTTTTTAAA
*
91357123 TATTTTA
1 TTTTTTA
91357130 TTAATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:91360449 original size:271 final size:270
Alignment explanation
Indices: 91359949--91360488 Score: 679
Period size: 271 Copynumber: 2.0 Consensus size: 270
91359939 GATCCAAACA
* * * *
91359949 TTTCTAGGTTGAAATATTTTTATATCGATCGAAGAGCTATTTGTTAGCTTCAAAATATACTTTGA
1 TTTCTAGGTTGAAATATTTTTATATCGATCGAAGAGCTATCTATTAGCTTCAAAATACACTTTAA
* * * *
91360014 ATCACTCGATTTCGAGTTTGGGAGCTTAAGTCATGGCCATTTTATTGAAGATTGCATAAGTAAAA
66 ATCACTCGATTTCGAGTTGGGGAGCTCAAGTCATGGCCATTTTAATGAAGATTGCAGAAGTAAAA
* *
91360079 TTTATAGACAAGATTATTACAACTTTTGGGCTTTAATTCAAGTTTAAATTCGATTTGAAGGCTTA
131 TTTATAGACAAGATTATTACAACTTTCGGACTTTAATTCAAGTTTAAATTCGATTTGAAGGCTTA
* * * *
91360144 ATTTTGATTATATATGAGTTCAATATTATATTTATTAGGTTTTGCATTATTTATTTATTCAAAAT
196 ATTTTAATTATATACGAGCTCAATATTATATTTATTAGGTTTTACATTATTTATTTATTCAAAAT
91360209 TTTAGGATAT
261 TTTAGGATAT
* * * *
91360219 TTTCTAGGTTGAGATTTTTTTTATATCGATCGAAGAGCTATCTATTAGCTTTAAAATGCACTTTA
1 TTTCTAGGTTGA-AATATTTTTATATCGATCGAAGAGCTATCTATTAGCTTCAAAATACACTTTA
* * * * ***
91360284 AATTATTCGGTTTCGAGTTGGGGAGCTCAAGTTATGGTTGTTTTAATGAAGATTGCACGAA-TAA
65 AATCACTCGATTTCGAGTTGGGGAGCTCAAGTCATGGCCATTTTAATGAAGATTGCA-GAAGTAA
* * *** ** * * * *
91360348 AATTTTTGGGTGAGATTATTATGAGTTTCGGACTTTAATTCGAGTTTAAATTTGATTTTAAGGCT
129 AATTTATAGACAAGATTATTACAACTTTCGGACTTTAATTCAAGTTTAAATTCGATTTGAAGGCT
* * * *
91360413 TAATTTTAATTATATGCGAGC-CTAATATTGTATTTATTAGGTTTTATATTATTTATTTATTCCA
194 TAATTTTAATTATATACGAGCTC-AATATTATATTTATTAGGTTTTACATTATTTATTTATTCAA
91360477 AATTTTAGGATA
258 AATTTTAGGATA
91360489 ATTTAAAATA
Statistics
Matches: 227, Mismatches: 40, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
270 13 0.06
271 212 0.93
272 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.44
Consensus pattern (270 bp):
TTTCTAGGTTGAAATATTTTTATATCGATCGAAGAGCTATCTATTAGCTTCAAAATACACTTTAA
ATCACTCGATTTCGAGTTGGGGAGCTCAAGTCATGGCCATTTTAATGAAGATTGCAGAAGTAAAA
TTTATAGACAAGATTATTACAACTTTCGGACTTTAATTCAAGTTTAAATTCGATTTGAAGGCTTA
ATTTTAATTATATACGAGCTCAATATTATATTTATTAGGTTTTACATTATTTATTTATTCAAAAT
TTTAGGATAT
Found at i:91362328 original size:433 final size:433
Alignment explanation
Indices: 91361522--91362387 Score: 1723
Period size: 433 Copynumber: 2.0 Consensus size: 433
91361512 AACCTAATCT
91361522 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
1 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
91361587 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
66 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
91361652 ATTTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
131 ATTTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
91361717 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
196 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
91361782 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
261 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
91361847 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
326 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
91361912 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
391 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
91361955 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
1 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
91362020 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
66 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
91362085 ATTTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
131 ATTTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
91362150 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
196 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
91362215 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
261 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
91362280 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
326 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
*
91362345 ATGTAATATTATAGATCAAGAAAAACAAGGTTTAGACCTAAAA
391 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
91362388 CGAGGGAAAA
Statistics
Matches: 432, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
433 432 1.00
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.36
Consensus pattern (433 bp):
ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
ATTTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
Found at i:91363805 original size:12 final size:12
Alignment explanation
Indices: 91363784--91363821 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
91363774 GGGCCCATGC
*
91363784 AAACACAAAACA
1 AAACAAAAAACA
91363796 AAACAAAAAAC-
1 AAACAAAAAACA
*
91363807 AAACTAAAAACA
1 AAACAAAAAACA
91363819 AAA
1 AAA
91363822 AAATAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.79, C:0.18, G:0.00, T:0.03
Consensus pattern (12 bp):
AAACAAAAAACA
Found at i:91367031 original size:261 final size:263
Alignment explanation
Indices: 91366593--91367083 Score: 711
Period size: 261 Copynumber: 1.9 Consensus size: 263
91366583 AAGGCGATGT
* * *
91366593 TCGATATTTGGCAATTCGCGGAATTGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAA
1 TCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCCCGTTCGCTCAA
* * * * *
91366658 AATAATCGAATGTCCCTTTAGAATTTTATTCATGTTTTCTAAAAACTCTTTAAAACGAAGGAAAT
66 AATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTCTAAAAACTCTCTAAAACGAAGGAAAT
* * *
91366723 GTTCGATGTTTGGCAATTCGGGGAGTCGTGCCCTATCGTGTTGGGTTGCAATTTCCCGTTCGTTC
131 GTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATATCCCGTTCGTTC
*
91366788 AAAATAATCGAATACTCCTTTGGAATTTCACTCATATCTTTAAAAATTCTCCAAAATGAAGGTAA
196 AAAATAATCGAATACTCCTTTAGAATTTCACTCATATCTTTAAAAATTCTCCAAAATGAAGGTAA
91366853 TAC
261 TAC
* * * *
91366856 TCGATGTTTGGCAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCCGTTCGTTCAA
1 TCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCCCGTTCGCTCAA
* * * *
91366920 AATAATCGAATATTCCTTT-GAAATTTCAC-CTATGTCTT-TAAAAATTCTCTAAAATGAAGGTA
66 AATAATCGAATATCCCTTTAG-AATTTCACTC-ATGTCTTCTAAAAACTCTCTAAAACGAAGGAA
* * * *
91366982 ATGTTCGATGTTTGGCAATTCGGGGAATTGTGCCCTATCGTGCTGGGTTGCGATATCCTGTTTGT
129 ATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATATCCCGTTCGT
*
91367047 TCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
194 TCAAAATAATCGAATACTCCTTTAGAATTTCACTCAT
91367084 GTTCTCTAAA
Statistics
Matches: 201, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
261 115 0.57
262 69 0.34
263 17 0.08
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (263 bp):
TCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCCCGTTCGCTCAA
AATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTCTAAAAACTCTCTAAAACGAAGGAAAT
GTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATATCCCGTTCGTTC
AAAATAATCGAATACTCCTTTAGAATTTCACTCATATCTTTAAAAATTCTCCAAAATGAAGGTAA
TAC
Found at i:91367076 original size:131 final size:131
Alignment explanation
Indices: 91366589--91367085 Score: 676
Period size: 130 Copynumber: 3.8 Consensus size: 131
91366579 AACGAAGGCG
* * * * * * *
91366589 ATGTTCGATATTTGGCAATTCGCGGAATTGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGC
1 ATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGT
* * * * * * * *
91366654 TCAAAATAATCGAATGTCCCTTTAGAATTTTATTCATGTTTTCTAAAAACTCTTTAAAACGAAGG
66 TCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTT-TAAAAATTCTCTAAAATGAAGG
*
91366719 AA
130 TA
* *
91366721 ATGTTCGATGTTTGGCAATTCGGGGAGTCGTGCCCTATCGTGTTGGGTTGCAATTTCCCGTTCGT
1 ATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGT
* * * *
91366786 TCAAAATAATCGAATACTCCTTTGGAATTTCACTCATATCTTTAAAAATTCTCCAAAATGAAGGT
66 TCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTAAAAATTCTCTAAAATGAAGGT
91366851 A
131 A
** *
91366852 ATACTCGATGTTTGGCAATTC-GGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCCGTTCGT
1 ATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGT
91366916 TCAAAATAATCGAATATTCCTTT-GAAATTTCAC-CTATGTCTTTAAAAATTCTCTAAAATGAAG
66 TCAAAATAATCGAATATTCCTTTAG-AATTTCACTC-ATGTCTTTAAAAATTCTCTAAAATGAAG
91366979 GTA
129 GTA
* * * * *
91366982 ATGTTCGATGTTTGGCAATTCGGGGAATTGTGCCCTATCGTGCTGGGTTGCGATATCCTGTTTGT
1 ATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGT
91367047 TCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
66 TCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
91367086 TCTCTAAATT
Statistics
Matches: 324, Mismatches: 36, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
129 2 0.01
130 118 0.36
131 112 0.35
132 92 0.28
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (131 bp):
ATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGT
TCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTAAAAATTCTCTAAAATGAAGGT
A
Found at i:91381931 original size:133 final size:133
Alignment explanation
Indices: 91381736--91382278 Score: 750
Period size: 133 Copynumber: 4.1 Consensus size: 133
91381726 AACTGATTCT
* * *
91381736 GATCTTGTCTCCCTAAAGTTGA-AGCGGAACAGATTGAAGACGGCAAATCTAGTCTTTCTGAAGT
1 GATCTTGTCTCCCTGAAGTT-ACAGCGGAACAGATCGAAGACGGCAAATCTAGTCTTCCTGAAGT
* * * * *
91381800 TACAGTGAAACAGATTTAAGCTACTATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAGAT
65 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
91381865 TGTA
130 TGTA
* *
91381869 GATCTTGTCTCCCTGAAGTTACAGCGGAGCAGATCGAAGACGGCAAATCTAGTCTTCTTGAAGTT
1 GATCTTGTCTCCCTGAAGTTACAGCGGAACAGATCGAAGACGGCAAATCTAGTCTTCCTGAAGTT
* *
91381934 GCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGAAGTAGGCTAAAGATT
66 GCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATT
91381999 GTA
131 GTA
* ** * *
91382002 GATCCTGTCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGG-AGAATCTAGTCTTCCTGAAGT
1 GATCTTGTCTCCCTGAAGTTACAGCGGAACAGATCGAAGACGGCA-AATCTAGTCTTCCTGAAGT
* *
91382066 TGTAGTGAAGCAGATTTAAGCCACCGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
65 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
91382131 TGTA
130 TGTA
* ** * * ** * * *
91382135 GATCTTG-CTTCCCTGAAGTTGCAATGGAACAGATCAAAAACAACGAATCTTGTCTTCCTAAAGT
1 GATCTTGTC-TCCCTGAAGTTACAGCGGAACAGATCGAAGACGGCAAATCTAGTCTTCCTGAAGT
*
91382199 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
65 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
*
91382264 TGCA
130 TGTA
*
91382268 GATCTCGTCTC
1 GATCTTGTCTC
91382279 TAGTGGAGCA
Statistics
Matches: 368, Mismatches: 37, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
132 3 0.01
133 364 0.99
134 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (133 bp):
GATCTTGTCTCCCTGAAGTTACAGCGGAACAGATCGAAGACGGCAAATCTAGTCTTCCTGAAGTT
GCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATT
GTA
Found at i:91382642 original size:12 final size:12
Alignment explanation
Indices: 91382625--91382650 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91382615 GGGCCTATGC
91382625 AAACACAAAACA
1 AAACACAAAACA
91382637 AAACACAAAACA
1 AAACACAAAACA
91382649 AA
1 AA
91382651 CCAAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (12 bp):
AAACACAAAACA
Found at i:91385764 original size:130 final size:130
Alignment explanation
Indices: 91385411--91385933 Score: 634
Period size: 131 Copynumber: 4.0 Consensus size: 130
91385401 TAATTATTCA
* * * * * *
91385411 TTTAAAAATTCTTTGAAACGAATGTGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAAC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTATC
* * * * * * *
91385476 GTGCTGAGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCATTCATGT
65 GTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
*
91385541 T
130 C
* * * * *
91385542 TTCTAAAAACTCTTTAAAATGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAGTCGTGCCCTAT
1 TT-TAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTC-GGGAATCGTGCCCTAT
* *
91385607 CGTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATA-TCTCTTTGGAATTTCACTCAT
64 CGTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTC-CTTTAGAATTTCACTCAT
91385671 GTC
128 GTC
* ** *
91385674 TTTAAAAATTCTCCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGAATCGTACCCTATCG
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
* * * * * * *
91385739 TGTTGGGTTGCGATTTCCCGTTCGTTAAAAAGAATTGAATATTCCTTTGGAATTTCACCCATGTC
66 TGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTC
* *
91385804 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGAAATTTGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAA-TTCGGGAATCGTGCCCTATC
* * * * * *
91385869 ATGCTGGGTTGCGATCTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCATTCATGT
65 GTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
91385934 TCTCCAAATT
Statistics
Matches: 335, Mismatches: 52, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
130 111 0.33
131 115 0.34
132 108 0.32
133 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (130 bp):
TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
TGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTC
Found at i:91385877 original size:261 final size:263
Alignment explanation
Indices: 91385441--91385933 Score: 677
Period size: 261 Copynumber: 1.9 Consensus size: 263
91385431 AATGTGATGT
* * * *
91385441 TCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTGAGTTGCAATTTCTCGTTTGCTCAA
1 TCGATATTTGGCAATTCGCGGAATCGTACCCTAACGTGCTGAGTTGCAATTTCCCGTTCGCTAAA
* * ** * * *
91385506 AATAATCGAATGTCCCTTTAGAATTTCATTCATGTTTTCTAAAAACTCTTTAAAATGAAGGAAAT
66 AAGAATCGAATATCCCTTTAGAATTTCACCCATGTCTTCTAAAAACTCTCTAAAACGAAGGAAAT
* * * *
91385571 GTTCGATGTTTGGCAATTCGGGGAGTCGTGCCCTATCGTGCTGGGTTGCAATTTCCTGTTCGTTC
131 GTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATCATGCTGGGTTGCAATCTCCTGTTCGTTC
*
91385636 AAAATAATCGAATA-TCTCTTTGGAATTTCACTCATGTCTTTAAAAATTCTCCAAAACGAAGGTA
196 AAAATAATCGAATATTC-CTTTAGAATTTCACTCATGTCTTTAAAAATTCTCCAAAACGAAGGTA
91385700 ATAC
260 ATAC
* * * * * *
91385704 TCGATGTTTGGCAATTCG-GGAATCGTACCCTATCGTGTTGGGTTGCGATTTCCCGTTCGTTAAA
1 TCGATATTTGGCAATTCGCGGAATCGTACCCTAACGTGCTGAGTTGCAATTTCCCGTTCGCTAAA
* * * * *
91385768 AAGAATTGAATATTCCTTTGGAATTTCACCCATGTCTT-TAAAAATTCTCTAAAACGAAGGTAAT
66 AAGAATCGAATATCCCTTTAGAATTTCACCCATGTCTTCTAAAAACTCTCTAAAACGAAGGAAAT
* * *
91385832 GTTCGATGTTTGGAAATTTGGGGAATCGTGCCCTATCATGCTGGGTTGCGATCTCCTGTTTGTTC
131 GTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATCATGCTGGGTTGCAATCTCCTGTTCGTTC
*
91385897 AAAATAATCGAATATTCCTTTAGAATTTCATTCATGT
196 AAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
91385934 TCTCCAAATT
Statistics
Matches: 198, Mismatches: 31, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
261 112 0.57
262 69 0.35
263 17 0.09
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (263 bp):
TCGATATTTGGCAATTCGCGGAATCGTACCCTAACGTGCTGAGTTGCAATTTCCCGTTCGCTAAA
AAGAATCGAATATCCCTTTAGAATTTCACCCATGTCTTCTAAAAACTCTCTAAAACGAAGGAAAT
GTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATCATGCTGGGTTGCAATCTCCTGTTCGTTC
AAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTAAAAATTCTCCAAAACGAAGGTAA
TAC
Found at i:91385926 original size:131 final size:131
Alignment explanation
Indices: 91385411--91385933 Score: 647
Period size: 130 Copynumber: 4.0 Consensus size: 131
91385401 TAATTATTCA
* * * * * * *
91385411 TTTAAAAATTCTTTGAAACGAATGTGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAAC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * * *
91385476 GTGCTGAGTTGCAATTT-CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCATTCATG
66 GTGCTGGGTTGCAATTTCCT-GTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATG
*
91385540 TT
130 TC
* * * * *
91385542 TTCTAAAAACTCTTTAAAATGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAGTCGTGCCCTAT
1 TT-TAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
*
91385607 CGTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATA-TCTCTTTGGAATTTCACTCAT
65 CGTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATTC-CTTTAGAATTTCACTCAT
91385671 GTC
129 GTC
* ** *
91385674 TTTAAAAATTCTCCAAAACGAAGGTAATACTCGATGTTTGGCAATTC-GGGAATCGTACCCTATC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * * * * *
91385738 GTGTTGGGTTGCGATTTCCCGTTCGTTAAAAAGAATTGAATATTCCTTTGGAATTTCACCCATGT
66 GTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
91385803 C
131 C
* *
91385804 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGAAATTTGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * *
91385869 ATGCTGGGTTGCGATCTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCATTCATGT
66 GTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
91385934 TCTCCAAATT
Statistics
Matches: 336, Mismatches: 51, Indels: 10
0.85 0.13 0.03
Matches are distributed among these distances:
130 113 0.34
131 113 0.34
132 108 0.32
133 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
C
Found at i:91391932 original size:19 final size:18
Alignment explanation
Indices: 91391906--91391954 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
91391896 TAGGGTTCTT
*
91391906 GGTTTTTTTTTGGGGTTA
1 GGTTTTTTTTTTGGGTTA
91391924 GGTTTTTTTTTTGGGTTA
1 GGTTTTTTTTTTGGGTTA
91391942 GGTTTTTTCTTTT
1 GGTTTTTT-TTTT
91391955 TCTTTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 25 0.86
19 4 0.14
ACGTcount: A:0.04, C:0.02, G:0.27, T:0.67
Consensus pattern (18 bp):
GGTTTTTTTTTTGGGTTA
Found at i:91392837 original size:30 final size:30
Alignment explanation
Indices: 91392801--91392862 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
91392791 TTTTGAAAAA
91392801 CAGAAATTAAAAGAC-TCAACTCAACTCTCG
1 CAGAAATTAAAA-ACATCAACTCAACTCTCG
*
91392831 CAGAAATTAAAAACATCAACTCACCTCTCG
1 CAGAAATTAAAAACATCAACTCAACTCTCG
91392861 CA
1 CA
91392863 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 2 0.07
30 28 0.93
ACGTcount: A:0.44, C:0.29, G:0.08, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAACATCAACTCAACTCTCG
Found at i:91392982 original size:14 final size:14
Alignment explanation
Indices: 91392959--91392993 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
91392949 TGAGTTGATT
91392959 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
91392972 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
91392986 TTTGAAAA
1 TTTGAAAA
91392994 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:91393187 original size:78 final size:76
Alignment explanation
Indices: 91393013--91393296 Score: 296
Period size: 78 Copynumber: 3.8 Consensus size: 76
91393003 ATGTGACCCG
* * * *
91393013 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTG--AAAATACCT
* * *
91393078 TAGTGTGTGATCTGA
63 CAG-GCGTGATCTCA
* *
91393093 A-GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAATAGCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAA-ACAGAAATTGAAAATACCTC
*
91393157 AGCGCGTGAGC-CA
64 AG-GCGTGATCTCA
*
91393170 AGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAG
* **
91393233 ACGTG-TCTTG
66 GCGTGATCTCA
** *
91393243 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACA-AAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA
91393297 ATGGAAATTG
Statistics
Matches: 178, Mismatches: 22, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
71 10 0.06
72 12 0.07
73 33 0.19
75 20 0.11
76 10 0.06
77 2 0.01
78 44 0.25
79 30 0.17
80 17 0.10
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAG
GCGTGATCTCA
Found at i:91393428 original size:84 final size:86
Alignment explanation
Indices: 91393241--91393729 Score: 405
Period size: 84 Copynumber: 5.7 Consensus size: 86
91393231 CAACGTGTCT
** * *
91393241 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACA-AAATTGAAAAATGGAAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAA--CAAA
*
91393304 TTGAAAATACCTCGGCGTGTGATC
64 AT-AAAATACCTCGGCGTGTGATC
* * * **
91393328 TGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAATATAAATTGAAGTA-AAAA-
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAAAAT
* *
91393391 AAAATACCTCAGTGTGTGATC
66 AAAATACCTCGGCGTGTGATC
* *
91393412 TGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAAACGAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAAAC-AA
*
91393477 AATTGAAAATACTTCGGCGTGTGATC
63 AA-T-AAAATACCTCGGCGTGTGATC
* *
91393503 TGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTGAAAGACAGAAATTG-----------
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAAAAT
* * * *
91393557 AAAATAGCTCAGCGCGTGAGC
66 AAAATACCTCGGCGTGTGATC
** ** **
91393578 CAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTTGAAAGGCAGAAATTGAAAAAC
1 TGAGGCTCAACTCACCTCTCGCAATATGAG-----TTGATTTTTGAAAAACAGAAATTGAAAAAC
* *
91393643 GGAAATTGAAAATACCTCGGCGTGTGACC
61 --AAAAT-AAAATACCTCGGCGTGTGATC
* * * ** *
91393672 TGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTTACAACAGAAATTGAAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAA
91393730 TTACCTCGTG
Statistics
Matches: 324, Mismatches: 49, Indels: 55
0.76 0.11 0.13
Matches are distributed among these distances:
75 43 0.13
80 21 0.06
84 51 0.16
86 23 0.07
87 36 0.11
88 9 0.03
89 31 0.10
90 18 0.06
91 50 0.15
94 42 0.13
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (86 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAAAAT
AAAATACCTCGGCGTGTGATC
Found at i:91393512 original size:91 final size:88
Alignment explanation
Indices: 91393206--91393560 Score: 440
Period size: 84 Copynumber: 4.1 Consensus size: 88
91393196 AGTTGATTTT
* * **
91393206 TTGAAAACAG-AAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCGCAATAT
1 TTGAAAA-AGAAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
*
91393268 GAGTTGAATTTTGAAA-ACA-AAA
65 GAGTTGATTTTTGAAAGACAGAAA
* *
91393290 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAA-GAAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
91393355 AAGTTGATTTTTGAAAAATATAAA
65 GAGTTGATTTTTGAAAGACAGAAA
** * *
91393379 TTGAAGTA-AAAA---AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAAGAAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATG
91393440 AGTTGATTTTTTTGAAAGACAGAAA
66 AGTTGA--TTTTTGAAAGACAGAAA
* * *
91393465 TTGAAAAACGAAAATTGAAAATACTTCGGCGTGTGATCTGAGGCTCAACTCACCTATCGCAATAT
1 TTGAAAAA-GAAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
91393530 GAGTTGATTTTTGAAAGACAGAAA
65 GAGTTGATTTTTGAAAGACAGAAA
91393554 TTGAAAA
1 TTGAAAA
91393561 TAGCTCAGCG
Statistics
Matches: 233, Mismatches: 25, Indels: 21
0.84 0.09 0.08
Matches are distributed among these distances:
83 1 0.00
84 59 0.25
85 21 0.09
86 21 0.09
87 42 0.18
88 6 0.03
89 33 0.14
91 50 0.21
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (88 bp):
TTGAAAAAGAAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGAAAGACAGAAA
Found at i:91393711 original size:94 final size:94
Alignment explanation
Indices: 91393540--91393713 Score: 224
Period size: 94 Copynumber: 1.9 Consensus size: 94
91393530 GAGTTGATTT
* * * *
91393540 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATAC
*
91393605 GAGTCAATTTTTTTTTTGAAAGGCAGAAA
66 GAGTCAACTTTTTTTTTGAAAGGCAGAAA
* * * * *
91393634 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCGCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCGCTCGCAATA
**
91393698 CGAGTTGACTTTTTTT
65 CGAGTCAACTTTTTTT
91393714 ACAACAGAAA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
93 2 0.03
94 65 0.97
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (94 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATAC
GAGTCAACTTTTTTTTTGAAAGGCAGAAA
Found at i:91394024 original size:77 final size:77
Alignment explanation
Indices: 91393795--91394103 Score: 444
Period size: 77 Copynumber: 4.0 Consensus size: 77
91393785 AAGGCAGAAA
* * * * * *
91393795 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
91393860 GAGTTGATTTTT
66 GAGTTGATTTTT
* *
91393872 TTGACA-ACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
91393934 GAGTTGATTTTTTT
66 GAGTTGA--TTTTT
* *
91393948 TTGAAAGACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
91394013 GAGTTGATTTTT
66 GAGTTGATTTTT
* * * * *
91394025 TTGAAAGACAGAAACTGAAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
91394090 GAGTTGATTTTT
66 GAGTTGATTTTT
91394102 TT
1 TT
91394104 TTGAAAAGCA
Statistics
Matches: 210, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
74 33 0.16
76 34 0.16
77 108 0.51
79 35 0.17
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (77 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTT
Found at i:91394156 original size:323 final size:318
Alignment explanation
Indices: 91393130--91394701 Score: 1578
Period size: 323 Copynumber: 4.7 Consensus size: 318
91393120 TTGATTTTTT
* * * * * * * *
91393130 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCACTCGCAATA
** * * **
91393194 TAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTC
65 CGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*** * *
91393259 TCGCAATATGAGTTGAATTTTGAAAACAAAATTGAAAAATGGAAATTGAAAATACCTCGGCGTGT
130 TCGCAATATGAGTTG-ATTTT-------TTTTTGAAAGACGGAAATTGAAAATACCTCGGCGTGT
* * ** * *
91393324 GATCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAATATAAATTGAAGTAAA
187 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATT---G----
* *
91393389 AAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
245 --AAAATACCTCAGCGCGTGATCT-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
91393453 GAAAGACAGAAA
307 GAAAGACAGAAA
* * * *
91393465 TTGAAAAACGAAAATTGAAAATACTTCGGCGTGTGATCTGAGGCTCAACTCACCTA-TCGCAATA
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCC-ACTCGCAATA
* * * *
91393529 TGAGTTGA-TTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCA
65 CGAGTTGATTTTTTGAAA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCA
**
91393592 CCTCTCGCAATATGAGTCAATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATA
126 CCTCTCGCAATATGAGTTGA-TTTTTTTTT--------GAAA--G----ACGGAAATTGAAAATA
* * * *
91393657 CCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTTACAACAGA
176 CCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTAAAACAGA
* *
91393722 AATTGAAATTACCT-----CGTG-TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
240 AATTGAAAATACCTCAGCGCGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
91393781 TTGAAAGGCAGAAA
305 TTGAAAGACAGAAA
91393795 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
* *
91393860 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* *
91393925 TCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCGGCGTGTGATCTGAG
130 TCGCAATATGAGTTGATTTTTTTTTGAAAGACGGAAATTGAAAATACCTCGGCGTGTGACCTGAG
* *
91393990 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAACTGAAAATAGCTCAGC
195 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-AAA-ACAGAAATTGAAAATACCTCAGC
*
91394055 GCGTGAGCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAA-AGCAGAAA
258 GCGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGA-CAGAAA
* *
91394118 TTAAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
* *
91394183 GAGTTGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
91394248 TCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGG
130 TCGCAATATGAGTTGA-TTTTTTT------------TTGAAAGACGGAAATTGAAAATACCTCGG
* * *
91394313 CGTGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGA
182 CGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-AAAACAGAAATTGA
* * *
91394378 AATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTA
246 AAATACCTCAGCGCGTGAT-CTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGA
91394440 AAGACAGAAA
309 AAGACAGAAA
* *
91394450 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
* *
91394515 GAGTTGATTCTTTCAAAAACATAATAATGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAG
66 GAGTTGA---TTT--------T--T--TGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAG
* * *
91394580 ACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAATG-AAGACAGAAATT
116 GCTCAACTCACCTCTCGCAATATGAGTTGATT-TTT--------T--T-TTGAAAGACGGAAATT
*
91394644 GAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
169 GAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
91394702 GAAAAAGTAG
Statistics
Matches: 1067, Mismatches: 92, Indels: 149
0.82 0.07 0.11
Matches are distributed among these distances:
313 7 0.01
314 62 0.06
315 16 0.01
318 1 0.00
320 8 0.01
321 34 0.03
323 160 0.15
324 7 0.01
328 11 0.01
329 37 0.03
330 118 0.11
331 22 0.02
332 94 0.09
333 40 0.04
334 14 0.01
335 96 0.09
336 86 0.08
337 35 0.03
338 5 0.00
342 43 0.04
344 84 0.08
345 19 0.02
346 66 0.06
354 1 0.00
356 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (318 bp):
TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
GAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTTTTTGAAAGACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGG
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTGAAAATACCTCAGCGCG
TGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
Found at i:91394253 original size:74 final size:76
Alignment explanation
Indices: 91394128--91394456 Score: 224
Period size: 74 Copynumber: 4.1 Consensus size: 76
91394118 TTAAAAAACG
* *
91394128 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGA-CT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATCT
91394192 TTTTTGACAA-CA
65 TTTTTGA-AAGCA
* * * *
91394204 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATCTT
91394268 TTTTGAAAGGCA
66 TTTTGAAA-GCA
** *** * * * *
91394280 GAAATTGAAAA-A-CGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCACTCG
1 GAAATTGAAAATACCTCAGCGTG----TACCT----GAG-G--CTCA---AC---TCACCGCTCG
91394343 CAATACGAGTTGAT-TTTTTTGACAA-CA
49 CAATACGAGTTGATCTTTTTTGA-AAGCA
* * * *
91394370 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATCTT
*
91394434 TTTTTAAAGACA
66 TTTTGAAAG-CA
91394446 GAAATTGAAAA
1 GAAATTGAAAA
91394457 ATGGAAATTG
Statistics
Matches: 196, Mismatches: 30, Indels: 54
0.70 0.11 0.19
Matches are distributed among these distances:
74 63 0.32
75 16 0.08
76 46 0.23
77 1 0.01
78 1 0.01
79 3 0.02
80 3 0.02
82 1 0.01
83 4 0.02
84 1 0.01
86 3 0.02
87 3 0.02
88 1 0.01
89 1 0.01
90 12 0.06
91 9 0.05
92 28 0.14
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (76 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATCTT
TTTTGAAAGCA
Found at i:91394323 original size:166 final size:164
Alignment explanation
Indices: 91393130--91394701 Score: 1816
Period size: 166 Copynumber: 9.5 Consensus size: 164
91393120 TTGATTTTTT
* * * * * *
91393130 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATA
** * * **
91393194 TAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTC
65 CGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
91393259 TCGCAATATGAGTTGA--ATTTTGAAA-ACA-AAA
130 TCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
* * *
91393290 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* * * * * *
91393355 AAGTTGA-TTTTTGAAAAATATAAATTGAAGTAAAAAAAAATACCTCAGTGTGTGATCTGAAGCT
66 GAGTTGATTTTTTG-AAAACAGAAATT---G------AAAATACCTCAGCGTGT--CCTGAGGCT
91393419 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
119 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
* * * * *
91393465 TTGAAAAACGAAAATTGAAAATACTTCGGCGTGTGATCTGAGGCTCAACTCACCTATCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* * *
91393530 GAGTTGA-TTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCAC
66 GAGTTGATTTTTTGAAA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCAC
** *
91393593 CTCTCGCAATATGAGTCAATTTTTTTTTTGAAAGGCAGAAA
127 CTCTCGCAATATGAGT---TGATTTTTTTGAAAGACAGAAA
* *
91393634 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* * *
91393699 GAGTTGACTTTTTTTACAACAGAAATTGAAATTACCT---CGTGT-CTGAGGCTCAACTCACCTC
66 GAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
91393760 TCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAA
130 TCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
* *
91393795 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* *
91393860 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
91393925 TCGCAATATGAGTTGATTTTTTT------------
130 TCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
* * * *
91393948 TTGAAAGACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* * ** *
91394013 GAGTTGATTTTTTTGAAAGACAGAAACTGAAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCAC
66 GAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACCTCA--GCGTGTCCTGAGGCTCAACTCAC
91394078 CTCTCGCAATATGAGTTGATTTTTTTTTGAAA-AGCAGAAA
127 CTCTCGCAATATGAGTTGA--TTTTTTTGAAAGA-CAGAAA
* * *
91394118 TTAAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* *
91394183 GAGTTGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
91394248 TCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAA
130 TCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAA
*
91394284 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCACTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* *
91394349 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
91394414 TCGCAATATGAGTTGATTTTTTTTTAAAGACAGAAA
130 TCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAA
* *
91394450 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* *
91394515 GAGTTGATTCTTTCAAAAACATAATAATGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAG
66 GAGTTGA---TTT--------T--T--TGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAG
* * * * *
91394580 ACTCAACTCACCTCTCGCAATATGAGTTGA-TTCTTTCAAAAACATAATA
116 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAA-A
* * * *
91394629 ATG-AAGACAGAAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
*
91394691 GAGCTGATTTT
66 GAGTTGATTTT
91394702 GAAAAAGTAG
Statistics
Matches: 1241, Mismatches: 107, Indels: 123
0.84 0.07 0.08
Matches are distributed among these distances:
153 76 0.06
154 18 0.01
156 39 0.03
158 7 0.01
159 7 0.01
160 72 0.06
161 119 0.10
163 2 0.00
164 34 0.03
165 47 0.04
166 285 0.23
167 40 0.03
168 7 0.01
169 117 0.09
170 91 0.07
171 38 0.03
172 1 0.00
173 11 0.01
174 6 0.00
175 83 0.07
176 38 0.03
178 37 0.03
179 3 0.00
180 63 0.05
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (164 bp):
TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
GAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
Found at i:91394359 original size:92 final size:88
Alignment explanation
Indices: 91394204--91394701 Score: 289
Period size: 88 Copynumber: 5.7 Consensus size: 88
91394194 TTTGACAACA
* * *
91394204 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGA-TTTT
91394269 TTTGA-AAGGCAGAAATTGAAAAACG
65 TTTGACAA--CAGAAATTGAAAAACG
*
91394294 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
* *
91394359 TTTTGACAACAGAAATTGAAATTACCT
64 TTTTGACAACAGAAATTGAAA--AACG
* *** * * * * * * * * *
91394386 CAGCGTG----T-CCT--GAG-G--CTCA-ACTCACCTCTCGCAATATG-AGT-TGA-TT--TTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC-CACT-CGCAATACGAGTTGATTT
* *
91394435 TTTTAA-AGACAGAAATTGAAAAATG
64 TTTTGACA-ACAGAAATTGAAAAACG
* * * *
91394460 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTC
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
** * * * *
91394525 TTTCAAAAACATAATAATG-AAAACA
64 TTTTGACAACAGAA-ATTGAAAAACG
* * * * * *
91394550 GAAATTGAAAATACCTCGGCGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
** * * * * *
91394615 TCAAAAACATAATAATG-AAGACA
66 TTGACAACAGAA-ATTGAAAAACG
* * * * *
91394638 GAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
91394702 GAAAAAGTAG
Statistics
Matches: 329, Mismatches: 51, Indels: 58
0.75 0.12 0.13
Matches are distributed among these distances:
74 4 0.01
75 1 0.00
76 21 0.06
78 3 0.01
79 13 0.04
80 8 0.02
81 3 0.01
82 1 0.00
84 1 0.00
85 3 0.01
86 7 0.02
87 13 0.04
88 124 0.38
90 73 0.22
91 13 0.04
92 41 0.12
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (88 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
TTGACAACAGAAATTGAAAAACG
Found at i:91394388 original size:489 final size:486
Alignment explanation
Indices: 91392972--91394689 Score: 1953
Period size: 489 Copynumber: 3.5 Consensus size: 486
91392962 GAAAACAGAA
** * * * * * *
91392972 TTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATG
1 TTTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATA
* * * * * * * *
91393037 TGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTTAGTGTGTGATCTGAA-GCTCAAC
66 TGAGTTGATTTTTTTGAAAGACAGAAATTG--AAAATAGCTCAGCGCGTGAGCT-AAGGCTCAAC
* *
91393101 TCATCTCTCGCAATATGAGTTGA-TTTTTTTTG--AA--AG---------ACAGAAATTGAAAAT
128 TCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAGCAGAAATTAAAAACGGAAATTGAAAAT
* * * * * * ** *
91393152 AGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTGAAAACA
193 ACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTGACAACA
* * ** *
91393215 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATT
257 GAAATTGAAATTACCTC-ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
91393278 TTGAAA-ACA-AAATTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTC
321 TTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTC
* ** * * * * *
91393341 ACCTCTCGCAATATAAGTTGA--TTTTTGAAAAATATAAATTGAAGTAAAAAAAAATACCTCAGT
386 ACCACTCGCAATACGAGTTGATTTTTTTG-ACAACAGAAATT---G------AAATTACCTCAGC
* *
91393404 GTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
441 GTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
91393452 TGAAAGACAGAAATTGAAAAAC-GAAAATTGAAAATACTTCGGCGTGTGATCTGAGGCTCAACTC
1 T------------TTGAAAAACAG-AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTC
* *
91393516 ACCTATCGCAATATGAGTTGA--TTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC
53 ACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCT
** *
91393579 AAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTTGAAAGGCAGAAATTGAAAAACG
118 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTGAAAAGCAGAAATT-AAAAACG
91393644 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTT
181 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTT
*
91393709 TTTTTACAACAGAAATTGAAATTACCT--CGTGT-CTGAGGCTCAACTCACCTCTCGCAATATGA
246 TTTTGACAACAGAAATTGAAATTACCTCACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
91393771 GTTGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGA
311 GTTGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGA
*
91393836 GGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGC
376 GGCTCAACTCACCACTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGC
91393901 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
441 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
91393947 TTTGAAAGACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATA
*
91394012 TGAGTTGATTTTTTTGAAAGACAGAAACTGAAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCA
66 TGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCA
91394077 CCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAGCAGAAATTAAAAAACGGAAATTGAAAATAC
131 CCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAGCAGAAATT-AAAAACGGAAATTGAAAATAC
91394142 CTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTGACAACAGAA
195 CTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTGACAACAGAA
91394207 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
260 ATTGAAATTACCTCA-CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT
91394272 GAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCAC
323 GAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCAC
91394337 CACTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
388 CACTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
91394402 TCAACTCACCTCTCGCAATATGAGTTGATTTTTT
453 TCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* *
91394436 TTTAAAGACAGAAATTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTC
1 TTT-------G-AA---AAACA--GAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTC
* * *
91394501 GCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAAA-ACAGAAATTGAAAATACC
53 ACCTCTCGCAATATGAGTTGA-T-TTT--------T--T--TGAAAGACAGAAATTGAAAATAGC
* * * * * * *
91394565 TC-G-GCGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTGA---TTCTTTCAAAAACAT
104 TCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAGCAG
* * * * * *
91394625 AATAATGAAGACAGAAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAA
169 AA-ATTAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAA
91394688 TA
233 TA
91394690 TGAGCTGATT
Statistics
Matches: 1080, Mismatches: 84, Indels: 120
0.84 0.07 0.09
Matches are distributed among these distances:
480 1 0.00
483 67 0.06
484 121 0.11
485 71 0.07
487 7 0.01
488 78 0.07
489 173 0.16
490 26 0.02
491 1 0.00
492 61 0.06
494 2 0.00
495 41 0.04
496 1 0.00
497 17 0.02
500 3 0.00
501 32 0.03
502 64 0.06
503 12 0.01
504 58 0.05
505 95 0.09
506 9 0.01
507 6 0.01
508 30 0.03
510 37 0.03
511 2 0.00
512 1 0.00
513 39 0.04
514 2 0.00
515 18 0.02
516 5 0.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (486 bp):
TTTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCA
CCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAGCAGAAATTAAAAACGGAAATTGAAAATACC
TCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTGACAACAGAAA
TTGAAATTACCTCACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
AGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCAC
TCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTT
Found at i:91394436 original size:76 final size:75
Alignment explanation
Indices: 91394294--91394456 Score: 231
Period size: 76 Copynumber: 2.1 Consensus size: 75
91394284 TTGAAAAACG
*
91394294 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
*
91394359 TTTTGACA-ACA
65 TTTT-AAAGACA
* * *
91394370 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGA--TT
91394434 TTTTTAAAGACA
64 TTTTTAAAGACA
91394446 GAAATTGAAAA
1 GAAATTGAAAA
91394457 ATGGAAATTG
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
74 34 0.44
75 2 0.03
76 42 0.54
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTAAAGACA
Found at i:91394594 original size:88 final size:88
Alignment explanation
Indices: 91394366--91394699 Score: 483
Period size: 88 Copynumber: 3.8 Consensus size: 88
91394356 TTTTTTTGAC
* * *
91394366 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* * * * *
91394431 TTTTTTTTAAAGACAGAA-ATTGAA
65 -TTCTTTCAAAAACATAATAATGAA
* *
91394455 AA-ATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AACA--GAAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
91394519 TGATTCTTTCAAAAACATAATAATGAA
62 TGATTCTTTCAAAAACATAATAATGAA
*
91394546 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
91394611 TCTTTCAAAAACATAATAATGAA
66 TCTTTCAAAAACATAATAATGAA
* *
91394634 GACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
91394699 T
66 T
91394700 TTGAAAAAGT
Statistics
Matches: 223, Mismatches: 16, Indels: 13
0.88 0.06 0.05
Matches are distributed among these distances:
88 125 0.56
89 2 0.01
90 51 0.23
91 7 0.03
92 38 0.17
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (88 bp):
AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TCTTTCAAAAACATAATAATGAA
Found at i:91394605 original size:180 final size:176
Alignment explanation
Indices: 91394366--91394699 Score: 483
Period size: 180 Copynumber: 1.9 Consensus size: 176
91394356 TTTTTTTGAC
* * *
91394366 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTGA-
* * * *
91394431 TTTTTTTTAAAGACAGAA-ATTGAA-AAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGC
65 -TTCTTTCAAAAACAGAATAATGAAGAAA--GAAATTGAAAATACCTCGGC--GTGACCTGAGGC
* *
91394494 TCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAA
125 TCAACTCACCTCTCGCAATACGAGCTGATTCTTTCAAAAACATAATAATGAA
*
91394546 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
* *
91394611 TCTTTCAAAAACATAATAATGAAGACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
66 TCTTTCAAAAACAGAATAATGAAGAAAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
*
91394676 CACCTCTCGCAATATGAGCTGATT
131 CACCTCTCGCAATACGAGCTGATT
91394700 TTGAAAAAGT
Statistics
Matches: 139, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
176 39 0.28
178 33 0.24
179 5 0.04
180 62 0.45
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (176 bp):
AACAGAAATTGAAAATACCTCAGCGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
TCTTTCAAAAACAGAATAATGAAGAAAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
CACCTCTCGCAATACGAGCTGATTCTTTCAAAAACATAATAATGAA
Found at i:91394874 original size:72 final size:73
Alignment explanation
Indices: 91394724--91394918 Score: 227
Period size: 72 Copynumber: 2.7 Consensus size: 73
91394714 ATTAAAAGGT
* * ** * * * * * *
91394724 TCAACCCACCTCTTGCAATATGAGTTGATTCTTGACAAACAGAAATTGAGATTACCTCATCGTGT
1 TCAACTCACCTCTAGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGC
*
91394789 CCTGAGGC
66 CCCGAGGC
*
91394797 TCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATACCTCAGCGTG
1 TCAACTCACCTCTAGCAATATGAGTTGATAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGTG
91394860 CCCCGAGGC
65 CCCCGAGGC
* *
91394869 TCAACTCACCTCTAGCAATATGAGTTGAT-TTTGAAAAATAAAAATT-AAAA
1 TCAACTCACCTCTAGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAA
91394919 GGCTTAACTC
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
71 7 0.07
72 68 0.65
73 30 0.29
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (73 bp):
TCAACTCACCTCTAGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGC
CCCGAGGC
Found at i:91409673 original size:22 final size:22
Alignment explanation
Indices: 91409645--91409693 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 22
91409635 AAGGGCAGCA
91409645 TAATAAAATAAA-ATAATAATAG
1 TAATAAAATAAAGA-AATAATAG
91409667 TAATAAAATAAAGAAATAATAG
1 TAATAAAATAAAGAAATAATAG
91409689 TAATA
1 TAATA
91409694 CTAGTAGTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (22 bp):
TAATAAAATAAAGAAATAATAG
Found at i:91410004 original size:21 final size:22
Alignment explanation
Indices: 91409978--91410028 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 22
91409968 TATACAAAAC
*
91409978 AAAATATACACATAATATA-TT
1 AAAATATACACATAATATACGT
*
91409999 AAAATATATACATAATATACGT
1 AAAATATACACATAATATACGT
91410021 AAAATATA
1 AAAATATA
91410029 TGTAATGTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.59, C:0.08, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATATACACATAATATACGT
Found at i:91412034 original size:27 final size:26
Alignment explanation
Indices: 91411997--91412108 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
91411987 AGCATCGCTG
* *
91411997 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
91412023 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
91412051 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
91412078 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
91412105 CCAG
1 CCAG
91412109 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.07
27 54 0.71
28 17 0.22
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:91412056 original size:54 final size:54
Alignment explanation
Indices: 91411997--91412108 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
91411987 AGCATCGCTG
*
91411997 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
** * * *
91412051 CCAGAACAGATATATGTGGTAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
91412105 CCAG
1 CCAG
91412109 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:91413737 original size:26 final size:26
Alignment explanation
Indices: 91413707--91413788 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
91413697 TGAAATGCCC
91413707 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
91413733 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
91413759 ATCATGGAAA-ATTTACCTAACCCATT
1 ATCAT-GAAACATTTACCTAACCCATT
91413785 ATCA
1 ATCA
91413789 ATTTTTATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 50 0.94
27 3 0.06
ACGTcount: A:0.38, C:0.26, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:91414819 original size:16 final size:16
Alignment explanation
Indices: 91414798--91414829 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
91414788 CGCCATCACC
91414798 ACATCTGAATTTGCTT
1 ACATCTGAATTTGCTT
91414814 ACATCTGAATTTGCTT
1 ACATCTGAATTTGCTT
91414830 CCTTATTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (16 bp):
ACATCTGAATTTGCTT
Found at i:91420367 original size:18 final size:18
Alignment explanation
Indices: 91420329--91420368 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
91420319 TTATTTTTAT
* *
91420329 TTAATATTAATATTAATA
1 TTAATATTAATATAAAAA
91420347 TTAATATTAATATAAAAA
1 TTAATATTAATATAAAAA
91420365 TTAA
1 TTAA
91420369 AATTTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAATATTAATATAAAAA
Found at i:91420372 original size:6 final size:6
Alignment explanation
Indices: 91420302--91420359 Score: 64
Period size: 6 Copynumber: 9.5 Consensus size: 6
91420292 GGGGGATTTT
* **
91420302 TATTAA TACTAA TA-TAA TTATTTT TATTTAA TATTAA TATTAA TATTAA
1 TATTAA TATTAA TATTAA -TATTAA TA-TTAA TATTAA TATTAA TATTAA
91420351 TATTAA TAT
1 TATTAA TAT
91420360 AAAAATTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
5 3 0.07
6 36 0.82
7 5 0.11
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (6 bp):
TATTAA
Found at i:91433436 original size:14 final size:13
Alignment explanation
Indices: 91433396--91433437 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
91433386 CATGGTCCGT
91433396 ATTATGATAGAAA
1 ATTATGATAGAAA
91433409 TATTAT-AT-GAAA
1 -ATTATGATAGAAA
91433421 ATTATGATAAGAAA
1 ATTATGAT-AGAAA
91433435 ATT
1 ATT
91433438 TTATCAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 5 0.20
12 6 0.24
13 2 0.08
14 12 0.48
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (13 bp):
ATTATGATAGAAA
Found at i:91441489 original size:22 final size:22
Alignment explanation
Indices: 91441464--91441505 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
91441454 TAACTTTTAA
*
91441464 ATAAAAT-ATATTTATAAATAAC
1 ATAAAATCAT-TTTAAAAATAAC
91441486 ATAAAATCATTTTAAAAATA
1 ATAAAATCATTTTAAAAATA
91441506 TTTTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (22 bp):
ATAAAATCATTTTAAAAATAAC
Found at i:91443333 original size:12 final size:11
Alignment explanation
Indices: 91443311--91443379 Score: 50
Period size: 12 Copynumber: 5.8 Consensus size: 11
91443301 GTACACATTA
91443311 TTTATATTATT
1 TTTATATTATT
91443322 TTTATGATTATT
1 TTTAT-ATTATT
91443334 ATTGTAT-TTATT
1 -TT-TATATTATT
*
91443346 TTTACTACTATT
1 TTTA-TATTATT
*
91443358 ATTATATTTATT
1 TTTATA-TTATT
*
91443370 ATTAGTATTA
1 TTTA-TATTA
91443380 GTATTATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
10 2 0.04
11 10 0.21
12 29 0.60
13 4 0.08
14 3 0.06
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (11 bp):
TTTATATTATT
Found at i:91443366 original size:24 final size:23
Alignment explanation
Indices: 91443307--91443387 Score: 83
Period size: 24 Copynumber: 3.4 Consensus size: 23
91443297 TCATGTACAC
91443307 ATTATT-TATATTATTTTTATGATT
1 ATTATTATAT-TTATTTTTAT-ATT
* *
91443331 ATTATTGTATTTATTTTTACTACT
1 ATTATTATATTTATTTTTA-TATT
*
91443355 ATTATTATATTTATTATTAGTATT
1 ATTATTATATTTATTTTTA-TATT
*
91443379 AGTATTATA
1 ATTATTATA
91443388 ATTACTATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
24 45 0.92
25 4 0.08
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (23 bp):
ATTATTATATTTATTTTTATATT
Found at i:91443619 original size:18 final size:18
Alignment explanation
Indices: 91443593--91443652 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
91443583 TAATACCATA
*
91443593 TTATGTATATATTTTATG
1 TTATATATATATTTTATG
* *
91443611 TTATATATATATTTTTTA
1 TTATATATATATTTTATG
91443629 TT-TAT-TATATTCTTATG
1 TTATATATATATT-TTATG
91443646 -TATATAT
1 TTATATAT
91443653 TTTTAATATC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
16 7 0.21
17 9 0.26
18 18 0.53
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (18 bp):
TTATATATATATTTTATG
Found at i:91443627 original size:20 final size:18
Alignment explanation
Indices: 91443598--91443638 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
91443588 CCATATTATG
91443598 TATATATTTTATGTTATATA
1 TATATATTTTAT-TTAT-TA
*
91443618 TATATTTTTTATTTATTA
1 TATATATTTTATTTATTA
91443636 TAT
1 TAT
91443639 TCTTATGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 4 0.20
20 11 0.55
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (18 bp):
TATATATTTTATTTATTA
Found at i:91443669 original size:25 final size:23
Alignment explanation
Indices: 91443569--91443677 Score: 53
Period size: 25 Copynumber: 4.5 Consensus size: 23
91443559 ATGTGTATGT
* *
91443569 ATTA-TATATATTTTTAATACCAT
1 ATTATTATATATTTTTAATA-TAC
** *
91443592 ATTATGTATATATTTTATGTTATAT
1 ATTAT-TATATATTTT-TAATATAC
* * *
91443617 ATATATTTTTTATTTATT-ATATTC
1 AT-TATTATATATTT-TTAATATAC
91443641 -TTATGTATATATTTTTAATATCAC
1 ATTAT-TATATATTTTTAATAT-AC
91443665 ATTATTCATATAT
1 ATTATT-ATATAT
91443678 ATATTTTATA
Statistics
Matches: 65, Mismatches: 11, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
22 5 0.08
23 16 0.25
24 5 0.08
25 32 0.49
26 7 0.11
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.58
Consensus pattern (23 bp):
ATTATTATATATTTTTAATATAC
Found at i:91443925 original size:24 final size:25
Alignment explanation
Indices: 91443885--91443931 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
91443875 CATACTTCTA
91443885 ATATCATTATTATATATATGTGTGT
1 ATATCATTATTATATATATGTGTGT
*
91443910 ATAT-ATTATGTA-ATATTTGTGT
1 ATATCATTAT-TATATATATGTGT
91443932 TTCAATACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53
Consensus pattern (25 bp):
ATATCATTATTATATATATGTGTGT
Found at i:91445734 original size:17 final size:17
Alignment explanation
Indices: 91445708--91445741 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
91445698 GAACCCTTAA
91445708 CAAAAACCCCTAGTGTG
1 CAAAAACCCCTAGTGTG
* *
91445725 CAAAACCCCCTTGTGTG
1 CAAAAACCCCTAGTGTG
91445742 TGAAAACCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (17 bp):
CAAAAACCCCTAGTGTG
Found at i:91448161 original size:2 final size:2
Alignment explanation
Indices: 91448148--91448178 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
91448138 TAAAAGATAA
*
91448148 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91448179 AAGCGGAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:91456385 original size:67 final size:67
Alignment explanation
Indices: 91456277--91456415 Score: 251
Period size: 67 Copynumber: 2.1 Consensus size: 67
91456267 CGTTAAAGTC
*
91456277 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTTAACTTATTCA
1 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
91456342 TA
66 TA
* *
91456344 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCCCATTCAACTTGTTCA
1 ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
91456409 TA
66 TA
91456411 ATGAC
1 ATGAC
91456416 TAATTAATTT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.35
Consensus pattern (67 bp):
ATGACAACTTTACTGTAAAAGAACCTATGAAGAAATATATTTAATTTCCACATTCAACTTATTCA
TA
Found at i:91457058 original size:15 final size:15
Alignment explanation
Indices: 91457038--91457072 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
91457028 AGTTAGGCTC
91457038 TGAATTCCTTTATTA
1 TGAATTCCTTTATTA
91457053 TGAATTCCTTTATTA
1 TGAATTCCTTTATTA
91457068 TGAAT
1 TGAAT
91457073 GTTGCTACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (15 bp):
TGAATTCCTTTATTA
Found at i:91465195 original size:20 final size:20
Alignment explanation
Indices: 91465154--91465195 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
91465144 CTAAACATTG
* *
91465154 AACCCCAAACTAGAGTCTTA
1 AACCCCAAACTAGAATCCTA
*
91465174 AACCCCAAACTCGAATCCTA
1 AACCCCAAACTAGAATCCTA
91465194 AA
1 AA
91465196 TCCTTAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.43, C:0.33, G:0.07, T:0.17
Consensus pattern (20 bp):
AACCCCAAACTAGAATCCTA
Found at i:91473413 original size:38 final size:40
Alignment explanation
Indices: 91473329--91473401 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 40
91473319 ATATATATAA
*
91473329 TATTATAAATTTATAATTAAAAATTAAAAATAATATCAATT
1 TATTA-AAATTTATAATTAAAAATTAAAAATAATAACAATT
91473370 T-TTAAAATTT-TAA-TAAAAA-TAAAAA-AATAACA
1 TATTAAAATTTATAATTAAAAATTAAAAATAATAACA
91473402 TTTTTTATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
35 6 0.19
36 6 0.19
37 6 0.19
38 3 0.10
39 6 0.19
40 3 0.10
41 1 0.03
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (40 bp):
TATTAAAATTTATAATTAAAAATTAAAAATAATAACAATT
Found at i:91483131 original size:18 final size:18
Alignment explanation
Indices: 91483105--91483146 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
91483095 AAAAATTGTT
*
91483105 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
91483123 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
91483141 TTTATA
1 TTTATA
91483147 CTTTAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:91483401 original size:30 final size:30
Alignment explanation
Indices: 91483365--91483424 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
91483355 ATTTTTGGAC
91483365 TAAAGTTCATACCAGACAATAATATACAAA
1 TAAAGTTCATACCAGACAATAATATACAAA
91483395 TAAAGTTCATACCAGACAATAATATACAAA
1 TAAAGTTCATACCAGACAATAATATACAAA
91483425 GAAGGAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.23
Consensus pattern (30 bp):
TAAAGTTCATACCAGACAATAATATACAAA
Found at i:91486097 original size:24 final size:24
Alignment explanation
Indices: 91486041--91486087 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
91486031 TAAGCCCTCC
91486041 AAAAAAAAAAAAAAACCTAACCCA
1 AAAAAAAAAAAAAAACCTAACCCA
*
91486065 AAAAAAAAAGAAAAACCTAACCC
1 AAAAAAAAAAAAAAACCTAACCC
91486088 CCCAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.72, C:0.21, G:0.02, T:0.04
Consensus pattern (24 bp):
AAAAAAAAAAAAAAACCTAACCCA
Found at i:91486108 original size:27 final size:23
Alignment explanation
Indices: 91486042--91486098 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 23
91486032 AAGCCCTCCA
*
91486042 AAAAAAAAAAAAAACCTAACCCA
1 AAAAAAAAAAAAAACCTAACCCC
91486065 AAAAAAAAAGAAAAACCTAACCCC
1 AAAAAAAAA-AAAAACCTAACCCC
**
91486089 CCAAAAAAAA
1 AAAAAAAAAA
91486099 CCAAGAAACC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 10 0.33
24 20 0.67
ACGTcount: A:0.72, C:0.23, G:0.02, T:0.04
Consensus pattern (23 bp):
AAAAAAAAAAAAAACCTAACCCC
Found at i:91488514 original size:12 final size:12
Alignment explanation
Indices: 91488497--91488532 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
91488487 ATTCATTTGA
91488497 CATTCATGCATT
1 CATTCATGCATT
91488509 CATTCATGCATT
1 CATTCATGCATT
*
91488521 CATTCATACATT
1 CATTCATGCATT
91488533 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:91497438 original size:13 final size:13
Alignment explanation
Indices: 91497420--91497444 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91497410 CACCCGAGGT
91497420 ATTTTCAATTTCC
1 ATTTTCAATTTCC
91497433 ATTTTCAATTTC
1 ATTTTCAATTTC
91497445 TGCTTTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTTCAATTTCC
Found at i:91497438 original size:84 final size:84
Alignment explanation
Indices: 91497204--91497526 Score: 345
Period size: 84 Copynumber: 3.8 Consensus size: 84
91497194 TACTTTTCAA
* *
91497204 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGA-GTA-TTTCAAGTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAG-TGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
*
91497267 CTTCATTATAGTTTTGAAAG
65 TTTCATTATAGTTTTGAAAG
*
91497287 AATCAACTCATATTGCGAGAGGTGAGTGAGTCTCAGGTCACGCCGAGGTATTTTCAATTTCTGTT
1 AATCAACTCATATTGCGAGAGGTGAGTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGTT
91497352 TTCATTATATGTTTTGAAAG
66 TTCATTATA-GTTTTGAAAG
* * * **
91497372 AATCAA-TCGTATTGCGAGAGGCGAGTGAG-CTCAGGTCACACCCGAGGTATTTTCAATTTCCAT
1 AATCAACTCATATTGCGAGAGGTGAGTGAGCCTCAGGTCAC-GCCGAGGTATTTTCAATTTCTGT
* ** *
91497435 TTTCAATT-TCTGCTTTAAAAAAA
65 TTTC-ATTAT-AG-TTT-TGAAAG
* * *
91497458 AATCAACTCA-ATT-CGAGAAGGTGAGTTGAGCCTCAAGGACAACGCTGAGGTACATTTCAATTT
1 AATCAACTCATATTGCGAG-AGGTGAG-TGAGCCTC-AGGTC-ACGCCGAGGTA-TTTTCAATTT
91497521 CTGTTT
61 CTGTTT
91497527 GTCAAAAAAA
Statistics
Matches: 204, Mismatches: 21, Indels: 23
0.82 0.08 0.09
Matches are distributed among these distances:
82 19 0.09
83 38 0.19
84 68 0.33
85 26 0.13
86 18 0.09
87 6 0.03
88 3 0.01
89 11 0.05
90 15 0.07
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (84 bp):
AATCAACTCATATTGCGAGAGGTGAGTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGTT
TTCATTATAGTTTTGAAAG
Found at i:91497604 original size:164 final size:158
Alignment explanation
Indices: 91497384--91498152 Score: 492
Period size: 164 Copynumber: 4.9 Consensus size: 158
91497374 TCAATCGTAT
* *
91497384 TGCGAGAGGCGAG-TGAGCTCAGGT-CACAC-CCGAGGTATTTTCAATTTCCATTTTCAATTTCT
1 TGCGAGCGGCGAGTTGAGCTCAGGTCCACACGCCGA-GTATTTTCAATTTCCGTTTTCAATTTCT
*
91497446 GCTTTAAAAAAAAATCAACTCA-ATT-CGAGAAGGTGAGTTGAGCCTCAAGGACAACGCTGAGGT
65 GCTTTAAAAAAAAATCAACTCATATTGCGAG-AGCTGAGTT-AGCCTC-AGGAC-ACGCTGAGGT
91497509 ACATTTCAATTTCTGTTTGTCAAAAAAATCACTTCG-
126 A-ATTTCAATTTCTG-TTGTC-AAAAAATCAC-TCGA
* *
91497545 TGCGATAGTGGTGA-TTGAGCCTCAGGTCCACACGCCGAGTATTTTCAA-TTCCGTTTTCAATTT
1 TGCG--AGCGGCGAGTTGAG-CTCAGGTCCACACGCCGAGTATTTTCAATTTCCGTTTTCAATTT
* *
91497608 CTGCCTTCAAAAAAAATCAACTCATATTGCGAGAGCTGAGTTAGCCTCAGGACACGCTGAGGTAA
63 CTGCTTTAAAAAAAAATCAACTCATATTGCGAGAGCTGAGTTAGCCTCAGGACACGCTGAGGTAA
*
91497673 TTTCAATTTCTGTTGTCAAAAAGTCACTCGA
128 TTTCAATTTCTGTTGTCAAAAAATCACTCGA
* ** *
91497704 TGCGAGCGGCGAGTTGAGCTCA-GTCCA-TCGCCGAGTATTCCCCAATTTCCGTTTTTAATTT-T
1 TGCGAGCGGCGAGTTGAGCTCAGGTCCACACGCCGAGTATT-TTCAATTTCCGTTTTCAATTTCT
* * * * * **
91497766 GCTTTCACCAAAAAAATCAAAC-CATA-TGC-AGCAGGTGAGTTTGACTTAGCCTCACCGCTGAA
65 GCTTT-A-AAAAAAAATC-AACTCATATTGCGAG-AGCTGAGTTAGCCTCAG-GACA-CGCTG-A
* * * *
91497828 GCTATTTTCAGTTTTCT-TT-TCAAAAAAAATCAACTCATA
123 GGTAATTTCA-ATTTCTGTTGTC--AAAAAATC-ACTC-GA
* * * * * *
91497867 TAGCTGAGAGGTGA-TTTACCTCAGAT-C-CACGCCGAG---------GTT--G-TTTC-ATTTC
1 T-GC-GAGCGGCGAGTTGAGCTCAGGTCCACACGCCGAGTATTTTCAATTTCCGTTTTCAATTTC
* * *
91497916 TGTTTTTAAAAAAAATCAAC-CATATTTGCG-GAG-T-AGTTGAAGCCTCAGGACACGCTGAAGT
64 TGCTTTAAAAAAAAATCAACTCATA-TTGCGAGAGCTGAGTT--AGCCTCAGGACACGCTGAGGT
91497977 AATTTCAATTTCTGTTGTCAAAAAATGCAACTCGA
126 AATTTCAATTTCTGTTGTCAAAAAAT-C-ACTCGA
* *
91498012 TTGCGCATAGTGGCGA--TGAGCCTCA-GTTCACACGCCGGAGTATTTTTCAATTTCCTATAGTT
1 -TGCG---AGCGGCGAGTTGAG-CTCAGGTCCACACGCC-GAGTA-TTTTCAATTTCC----GTT
* *
91498074 TTCAATTTC-GCCTTTCAAAAAAAATCACACT-ATATTGC-A-AGGTGAGTTGAGCCTCAGGACA
55 TTCAATTTCTG-CTTTAAAAAAAAATCA-ACTCATATTGCGAGAGCTGAGTT-AGCCTCAGGACA
91498135 CGCTGAGGTAA-TTCAATT
117 CGCTGAGGTAATTTCAATT
91498153 GCTCTGTGGT
Statistics
Matches: 481, Mismatches: 58, Indels: 133
0.72 0.09 0.20
Matches are distributed among these distances:
144 1 0.00
145 15 0.03
146 20 0.04
147 22 0.05
148 16 0.03
149 19 0.04
150 8 0.02
151 8 0.02
152 1 0.00
154 2 0.00
155 11 0.02
156 15 0.03
157 40 0.08
158 23 0.05
159 25 0.05
160 16 0.03
161 29 0.06
162 15 0.03
163 17 0.04
164 66 0.14
165 35 0.07
166 22 0.05
167 46 0.10
168 9 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (158 bp):
TGCGAGCGGCGAGTTGAGCTCAGGTCCACACGCCGAGTATTTTCAATTTCCGTTTTCAATTTCTG
CTTTAAAAAAAAATCAACTCATATTGCGAGAGCTGAGTTAGCCTCAGGACACGCTGAGGTAATTT
CAATTTCTGTTGTCAAAAAATCACTCGA
Found at i:91499922 original size:29 final size:29
Alignment explanation
Indices: 91499885--91499941 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
91499875 AGCCCTCCCC
91499885 AAAAAAAAAAACCTAA-CCAAAAAAAAAG
1 AAAAAAAAAAACCTAACCCAAAAAAAAAG
91499913 AAAAAGAAAAAACCTAACCCAAAAAAAAA
1 AAAAA-AAAAAACCTAACCCAAAAAAAAA
91499942 ACCTTTAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 5 0.19
29 11 0.41
30 11 0.41
ACGTcount: A:0.77, C:0.16, G:0.04, T:0.04
Consensus pattern (29 bp):
AAAAAAAAAAACCTAACCCAAAAAAAAAG
Found at i:91499942 original size:20 final size:20
Alignment explanation
Indices: 91499913--91499966 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 20
91499903 AAAAAAAAAG
91499913 AAAAAGAAAAAACC-TAACCC
1 AAAAA-AAAAAACCTTAACCC
91499933 -AAAAAAAAAACCTTTAACCCC
1 AAAAAAAAAAACC-TTAA-CCC
91499954 AAAAAAAAAAACC
1 AAAAAAAAAAACC
91499967 AAGAAACCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 8 0.27
19 4 0.13
20 3 0.10
21 3 0.10
22 12 0.40
ACGTcount: A:0.67, C:0.24, G:0.02, T:0.07
Consensus pattern (20 bp):
AAAAAAAAAAACCTTAACCC
Done.