Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 28 of 311
Found at i:8015540 original size:18 final size:19
Alignment explanation
Indices: 8015491--8015540 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
8015481 TATAATATAA
8015491 TTATTTAATTAATAAATATC
1 TTATTTAA-TAATAAATATC
8015511 TT-TTATAAAATAATAAATAT-
1 TTATT-T--AATAATAAATATC
8015531 TTATTTAATA
1 TTATTTAATA
8015541 TCTAATACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
18 4 0.15
19 2 0.08
20 6 0.23
21 12 0.46
22 2 0.08
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TTATTTAATAATAAATATC
Found at i:8015588 original size:24 final size:24
Alignment explanation
Indices: 8015561--8015611 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
8015551 GTATTACAAA
*
8015561 TGTATGTATT-TTTATCCATACATT
1 TGTATATATTATTTA-CCATACATT
* *
8015585 TGTATATTTTATTTACTATACATT
1 TGTATATATTATTTACCATACATT
8015609 TGT
1 TGT
8015612 CTTTGTACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.57
Consensus pattern (24 bp):
TGTATATATTATTTACCATACATT
Found at i:8018056 original size:24 final size:24
Alignment explanation
Indices: 8018024--8018073 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
8018014 TCACTAAAGA
8018024 TTCACTCAAATCACTCGAGGTATT
1 TTCACTCAAATCACTCGAGGTATT
*
8018048 TTCACTCAAATCACTCGAGGTGTT
1 TTCACTCAAATCACTCGAGGTATT
8018072 TT
1 TT
8018074 AAAGACAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (24 bp):
TTCACTCAAATCACTCGAGGTATT
Found at i:8029263 original size:26 final size:26
Alignment explanation
Indices: 8029198--8029266 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 26
8029188 TTATGGATTC
*
8029198 TCTGAAGCTAGTGTTAGCAGCATCGA
1 TCTGAAGCTAGTGTTAGCAACATCGA
* * * *
8029224 ACT-AAGCTAGTGTTAGTAACCTTGA
1 TCTGAAGCTAGTGTTAGCAACATCGA
8029249 TCTGAAGCTAGTGTTAGC
1 TCTGAAGCTAGTGTTAGC
8029267 GGCCTGAGTA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
25 20 0.57
26 15 0.43
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
TCTGAAGCTAGTGTTAGCAACATCGA
Found at i:8029397 original size:25 final size:25
Alignment explanation
Indices: 8029358--8029427 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
8029348 GCGGATTCTT
*
8029358 TGAAGCTAGTATTAGCAGCAT-TGAAC
1 TGAAGCTAGTGTTAGCA--ATCTGAAC
*
8029384 T-AAGCTAGTGTTAGCAATCCTGATC
1 TGAAGCTAGTGTTAGCAAT-CTGAAC
8029409 TGAAGCTAGTGTTAGCAAT
1 TGAAGCTAGTGTTAGCAAT
8029428 TCAAATACAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
23 2 0.05
25 19 0.49
26 18 0.46
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (25 bp):
TGAAGCTAGTGTTAGCAATCTGAAC
Found at i:8032218 original size:58 final size:61
Alignment explanation
Indices: 8032105--8032220 Score: 166
Period size: 61 Copynumber: 2.0 Consensus size: 61
8032095 AGTGATTATC
* * * * *
8032105 TTAATATTAAATTTAATTTAATATTTACTTTGTAGATAAATATTTTATTAATTTAATAGAT
1 TTAATATCAAATTTAATGTAATACTTACTCTGTAGATAAATATTATATTAATTTAATAGAT
8032166 TTAATATCAAATTTAATGTAATACTTA-TCT-T-GATAAATATTATATTAATTTAATA
1 TTAATATCAAATTTAATGTAATACTTACTCTGTAGATAAATATTATATTAATTTAATA
8032221 TTAAAATGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 23 0.46
59 1 0.02
60 2 0.04
61 24 0.48
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.50
Consensus pattern (61 bp):
TTAATATCAAATTTAATGTAATACTTACTCTGTAGATAAATATTATATTAATTTAATAGAT
Found at i:8034930 original size:21 final size:21
Alignment explanation
Indices: 8034878--8034918 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
8034868 AGAGCTAAAC
8034878 GGAAACCCATAAGGGTTGAAA
1 GGAAACCCATAAGGGTTGAAA
8034899 GGAAACCCATAAGGGTTGAA
1 GGAAACCCATAAGGGTTGAA
8034919 CAGAAACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
GGAAACCCATAAGGGTTGAAA
Found at i:8035695 original size:30 final size:30
Alignment explanation
Indices: 8035661--8035726 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
8035651 AGGATATCAT
8035661 AAAACCCCTAATAAAATAGAAATTTAATAC
1 AAAACCCCTAATAAAATAGAAATTTAATAC
*
8035691 AAAACCCTTAATAAAATAGAAATTTAATAC
1 AAAACCCCTAATAAAATAGAAATTTAATAC
*
8035721 CAAACC
1 AAAACC
8035727 ATAATATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.56, C:0.18, G:0.03, T:0.23
Consensus pattern (30 bp):
AAAACCCCTAATAAAATAGAAATTTAATAC
Found at i:8037085 original size:11 final size:11
Alignment explanation
Indices: 8037065--8037122 Score: 62
Period size: 11 Copynumber: 5.1 Consensus size: 11
8037055 TTATATACTA
8037065 AATAAAATAAT
1 AATAAAATAAT
*
8037076 AATAATATAAT
1 AATAAAATAAT
*
8037087 AATAAAATATCT
1 AATAAAATA-AT
* *
8037099 CATTAAAATATT
1 -AATAAAATAAT
8037111 AATAAAATAAT
1 AATAAAATAAT
8037122 A
1 A
8037123 TTTATCTAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
11 28 0.74
12 2 0.05
13 8 0.21
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:8038905 original size:23 final size:22
Alignment explanation
Indices: 8038868--8038940 Score: 56
Period size: 23 Copynumber: 3.1 Consensus size: 22
8038858 CGAACACACC
* * *
8038868 ATAGCTCGCAAGAGCGTCCTGAT
1 ATAGCTCACATGAGCAT-CTGAT
8038891 ATAGCTCACATGAGCATCTCGAT
1 ATAGCTCACATGAGCATCT-GAT
* * *
8038914 ATAAGCTCTCTTGAGCTTTCTGAT
1 AT-AGCTCACATGAGC-ATCTGAT
8038938 ATA
1 ATA
8038941 TGGTTCTTCC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
22 2 0.05
23 20 0.49
24 16 0.39
25 3 0.07
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (22 bp):
ATAGCTCACATGAGCATCTGAT
Found at i:8038938 original size:24 final size:23
Alignment explanation
Indices: 8038886--8038940 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
8038876 CAAGAGCGTC
8038886 CTGATAT-AGCTCACATGAGCAT
1 CTGATATAAGCTCACATGAGCAT
* * *
8038908 CTCGATATAAGCTCTCTTGAGCTTT
1 CT-GATATAAGCTCACATGAGC-AT
8038933 CTGATATA
1 CTGATATA
8038941 TGGTTCTTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 2 0.07
23 5 0.19
24 17 0.63
25 3 0.11
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (23 bp):
CTGATATAAGCTCACATGAGCAT
Found at i:8044734 original size:25 final size:26
Alignment explanation
Indices: 8044706--8044757 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
8044696 AAGTTGTAAA
8044706 TAAAACAATATCTCTAGA-AATTTTC
1 TAAAACAATATCTCTAGATAATTTTC
* * *
8044731 TAAAATAATTTCTTTAGATAATTTTC
1 TAAAACAATATCTCTAGATAATTTTC
8044757 T
1 T
8044758 CTCCACAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.44
Consensus pattern (26 bp):
TAAAACAATATCTCTAGATAATTTTC
Found at i:8044939 original size:59 final size:61
Alignment explanation
Indices: 8044866--8044983 Score: 168
Period size: 62 Copynumber: 2.0 Consensus size: 61
8044856 ATCACTATAA
* * *
8044866 TATTAAATTGATATAATACTTA-T-CAAGATAAATATTAGATTAAATTTAATATTAAGTCT
1 TATTAAATTAATATAATACTTACTACAAGATAAATATTAAAATAAATTTAATATTAAGTCT
* *
8044925 TATTAAATTAATATAATATTTATCTACAAGATAAATATTAAAATAATTTTAATATTAAG
1 TATTAAATTAATATAATACTTA-CTACAAGATAAATATTAAAATAAATTTAATATTAAG
8044984 ATAATAACTT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
59 20 0.39
61 1 0.02
62 30 0.59
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.42
Consensus pattern (61 bp):
TATTAAATTAATATAATACTTACTACAAGATAAATATTAAAATAAATTTAATATTAAGTCT
Found at i:8049608 original size:29 final size:29
Alignment explanation
Indices: 8049566--8049625 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
8049556 TTCTTTTGGC
*
8049566 ATGGAAGTATTGCTCTATTCCCAATAAGA
1 ATGGAAGTATTGCTCCATTCCCAATAAGA
8049595 ATGGAAGTATTGCTCCATTCCCAATAAGA
1 ATGGAAGTATTGCTCCATTCCCAATAAGA
8049624 AT
1 AT
8049626 TTGTCCACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (29 bp):
ATGGAAGTATTGCTCCATTCCCAATAAGA
Found at i:8051380 original size:14 final size:14
Alignment explanation
Indices: 8051356--8051388 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8051346 AATTTGTGTG
8051356 TTTTTTATTTTAT-
1 TTTTTTATTTTATA
8051369 TTTTTTATTTTTATA
1 TTTTTTA-TTTTATA
8051384 TTTTT
1 TTTTT
8051389 CACAAATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 6 0.33
15 5 0.28
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTTATTTTATA
Found at i:8055331 original size:71 final size:71
Alignment explanation
Indices: 8055247--8055390 Score: 288
Period size: 71 Copynumber: 2.0 Consensus size: 71
8055237 ATGTATATTT
8055247 GAGGTATTCTAAATATTCTGTTTGATATGTATTCCTCTTGAATGTCTCCATCCTTTCTACATAAA
1 GAGGTATTCTAAATATTCTGTTTGATATGTATTCCTCTTGAATGTCTCCATCCTTTCTACATAAA
8055312 ATTTTA
66 ATTTTA
8055318 GAGGTATTCTAAATATTCTGTTTGATATGTATTCCTCTTGAATGTCTCCATCCTTTCTACATAAA
1 GAGGTATTCTAAATATTCTGTTTGATATGTATTCCTCTTGAATGTCTCCATCCTTTCTACATAAA
8055383 ATTTTA
66 ATTTTA
8055389 GA
1 GA
8055391 AGGGAGTTTA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (71 bp):
GAGGTATTCTAAATATTCTGTTTGATATGTATTCCTCTTGAATGTCTCCATCCTTTCTACATAAA
ATTTTA
Found at i:8058075 original size:12 final size:13
Alignment explanation
Indices: 8058058--8058090 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
8058048 AAACAAATAC
8058058 AATAATATATAA-
1 AATAATATATAAT
8058070 AATAATA-ATAAT
1 AATAATATATAAT
8058082 AATAATATA
1 AATAATATA
8058091 GTAACATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.21
12 14 0.74
13 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
AATAATATATAAT
Found at i:8058494 original size:21 final size:21
Alignment explanation
Indices: 8058470--8058514 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
8058460 ATAATGTATA
8058470 ATATAA-ATAAATATATAAGAT
1 ATATAAGATAAA-ATATAAGAT
* *
8058491 ATATAAGTTAAAATATAATAT
1 ATATAAGATAAAATATAAGAT
8058512 ATA
1 ATA
8058515 ATAATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
ATATAAGATAAAATATAAGAT
Found at i:8058909 original size:18 final size:17
Alignment explanation
Indices: 8058873--8059005 Score: 185
Period size: 18 Copynumber: 7.5 Consensus size: 17
8058863 AATCATATCT
8058873 TCTAAGATTGTATATCATA
1 TCTAAGATTG-A-ATCATA
8058892 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
8058910 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
8058927 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
8058945 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
8058962 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
8058980 TTTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
8058997 TCTAAGATT
1 TCTAAGATT
8059006 ACATATCATT
Statistics
Matches: 104, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
17 46 0.44
18 47 0.45
19 11 0.11
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (17 bp):
TCTAAGATTGAATCATA
Found at i:8058931 original size:35 final size:35
Alignment explanation
Indices: 8058873--8059014 Score: 239
Period size: 35 Copynumber: 4.0 Consensus size: 35
8058863 AATCATATCT
8058873 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
8058910 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
8058945 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
8058980 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
8059015 TGAAGATTAT
Statistics
Matches: 102, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
35 87 0.85
36 5 0.05
37 10 0.10
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:8059537 original size:83 final size:83
Alignment explanation
Indices: 8059398--8059666 Score: 468
Period size: 83 Copynumber: 3.2 Consensus size: 83
8059388 TTCGATTTGT
* * *
8059398 AAGGATGTCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
8059463 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
8059481 AAGGATGCCTAAACCATCTTGAGTC-GTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
8059545 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
*
8059564 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
8059629 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
8059647 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
8059667 GATCTGCTTC
Statistics
Matches: 177, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
82 15 0.08
83 148 0.84
84 14 0.08
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:8060186 original size:119 final size:119
Alignment explanation
Indices: 8059590--8060183 Score: 1062
Period size: 119 Copynumber: 5.0 Consensus size: 119
8059580 CTTGAGTCTG
* * * * * *
8059590 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
8059655 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
8059709 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
8059774 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
8059828 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
8059893 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
8059947 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
8060012 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
8060066 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
8060131 CAAATCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
8060184 CTTCGATCTG
Statistics
Matches: 459, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
119 459 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:8060223 original size:44 final size:44
Alignment explanation
Indices: 8060175--8060354 Score: 179
Period size: 44 Copynumber: 4.1 Consensus size: 44
8060165 TGAAGGTTAG
8060175 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
8060219 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * ** * * *
8060261 ATGCTGAAATCTTCAATCTGCTTCGC-AGAGAGCGTAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATA-AACACAGGGATGCCAA
*
8060307 ATCTACTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
8060351 ATCT
1 ATCT
8060355 TGTTTCTTTG
Statistics
Matches: 105, Mismatches: 23, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
42 2 0.02
43 15 0.14
44 71 0.68
45 15 0.14
46 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:8061270 original size:11 final size:10
Alignment explanation
Indices: 8061233--8061272 Score: 53
Period size: 11 Copynumber: 3.8 Consensus size: 10
8061223 GCCTCTCCAT
8061233 TTTTTTTTCTC
1 TTTTTTTT-TC
8061244 TTTTTCTTTTC
1 TTTTT-TTTTC
*
8061255 TTTTTTTATC
1 TTTTTTTTTC
8061265 TTTTTTTT
1 TTTTTTTT
8061273 GAAATAGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
10 11 0.42
11 12 0.46
12 3 0.12
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:8067189 original size:21 final size:21
Alignment explanation
Indices: 8067157--8067221 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
8067147 TAAGTTTTTA
*
8067157 AAAT-AATGTATAATATAAAT
1 AAATAAATATATAATATAAAT
* *
8067177 AAATAAATATATAAGATATAT
1 AAATAAATATATAATATAAAT
*
8067198 AAGTTAAA-ATATAATATATAAT
1 AA-ATAAATATATAATATA-AAT
8067220 AA
1 AA
8067222 TTTACAAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 4 0.11
21 24 0.67
22 8 0.22
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.34
Consensus pattern (21 bp):
AAATAAATATATAATATAAAT
Found at i:8067190 original size:28 final size:29
Alignment explanation
Indices: 8067159--8067219 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
8067149 AGTTTTTAAA
8067159 ATAATGTATAATATAA-AT-AAATA-AATAT
1 ATAATG-AT-ATATAAGATAAAATATAATAT
*
8067187 ATAA-GATATATAAGTTAAAATATAATAT
1 ATAATGATATATAAGATAAAATATAATAT
8067215 ATAAT
1 ATAAT
8067220 AATTTACAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 6 0.21
26 3 0.11
27 6 0.21
28 13 0.46
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (29 bp):
ATAATGATATATAAGATAAAATATAATAT
Found at i:8067230 original size:23 final size:21
Alignment explanation
Indices: 8067165--8067223 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
8067155 TAAAATAATG
*
8067165 TATAATATA-AATAAATAAATA
1 TATAATATATAATAATTAAA-A
*
8067186 TATAAGATAT-ATAAGTTAAAA
1 TATAATATATAATAA-TTAAAA
8067207 TATAATATATAATAATT
1 TATAATATATAATAATT
8067224 TACAAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 24 0.75
22 8 0.25
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.37
Consensus pattern (21 bp):
TATAATATATAATAATTAAAA
Found at i:8067257 original size:12 final size:13
Alignment explanation
Indices: 8067240--8067268 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8067230 TTTTGAAAAT
8067240 ATAAATAATATA-
1 ATAAATAATATAC
8067252 ATAAATAATATAC
1 ATAAATAATATAC
8067265 ATAA
1 ATAA
8067269 TAAATTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAAATAATATAC
Found at i:8067277 original size:21 final size:20
Alignment explanation
Indices: 8067235--8067281 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
8067225 ACAAATTTTG
8067235 AAAATATAAATAATATAATA
1 AAAATATAAATAATATAATA
*
8067255 AATAATATACATAATA-AATTA
1 AA-AATATAAATAATATAA-TA
8067276 AAAATA
1 AAAATA
8067282 AGTTTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAATATAAATAATATAATA
Found at i:8067612 original size:18 final size:17
Alignment explanation
Indices: 8067576--8067708 Score: 176
Period size: 18 Copynumber: 7.5 Consensus size: 17
8067566 AATCATATCT
8067576 TCTAAGATTGTATATCATA
1 TCTAAGATTG-A-ATCATA
8067595 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
8067613 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
*
8067630 TCTAATATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
8067648 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
8067665 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
8067683 TTTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
8067700 TCTAAGATT
1 TCTAAGATT
8067709 ATATATCATT
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
17 45 0.44
18 46 0.45
19 11 0.11
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.40
Consensus pattern (17 bp):
TCTAAGATTGAATCATA
Found at i:8067634 original size:35 final size:35
Alignment explanation
Indices: 8067576--8067708 Score: 230
Period size: 35 Copynumber: 3.7 Consensus size: 35
8067566 AATCATATCT
8067576 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
*
8067613 TCTAAGATTGTATCATATCTAATATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
8067648 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
8067683 TTTAAGATTGTATCATATCTAAGATT
1 TCTAAGATTGTATCATATCTAAGATT
8067709 ATATATCATT
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
35 83 0.89
37 10 0.11
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.40
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:8071738 original size:43 final size:43
Alignment explanation
Indices: 8071677--8071781 Score: 174
Period size: 43 Copynumber: 2.4 Consensus size: 43
8071667 TTTAAATTTT
8071677 ATGACCTTTAGCGGCGTTTGAGGGAAAAGCGCCGCTAAAGGTC
1 ATGACCTTTAGCGGCGTTTGAGGGAAAAGCGCCGCTAAAGGTC
* * *
8071720 ATGACCTTTAACGACGTTTGTGGGAAAAGCGCCGCTAAAGGTC
1 ATGACCTTTAGCGGCGTTTGAGGGAAAAGCGCCGCTAAAGGTC
*
8071763 ATGCCCTTTAGCGGCGTTT
1 ATGACCTTTAGCGGCGTTT
8071782 TTTAAAATAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (43 bp):
ATGACCTTTAGCGGCGTTTGAGGGAAAAGCGCCGCTAAAGGTC
Found at i:8077365 original size:41 final size:41
Alignment explanation
Indices: 8077290--8077367 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
8077280 ATTTTGAGTC
*
8077290 CACACGAGCTGGCACACGGGCGTGTGATAAGACCGTGGAGA
1 CACACGAGCTGGCACACGGGCATGTGATAAGACCGTGGAGA
* *
8077331 CACACG-GCTTGCACACGGGTATGTTGA-AATGACCGTG
1 CACACGAGCTGGCACACGGGCATG-TGATAA-GACCGTG
8077368 TGTCCCCTGC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 16 0.50
41 16 0.50
ACGTcount: A:0.26, C:0.24, G:0.33, T:0.17
Consensus pattern (41 bp):
CACACGAGCTGGCACACGGGCATGTGATAAGACCGTGGAGA
Found at i:8083334 original size:10 final size:10
Alignment explanation
Indices: 8083321--8083345 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8083311 GCAAATACAA
8083321 ATAAATAAAG
1 ATAAATAAAG
8083331 ATAAATAAAG
1 ATAAATAAAG
8083341 ATAAA
1 ATAAA
8083346 AGCTAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:8087167 original size:24 final size:24
Alignment explanation
Indices: 8087023--8087166 Score: 227
Period size: 24 Copynumber: 6.0 Consensus size: 24
8087013 GCTTTATCAT
*
8087023 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
8087048 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
8087072 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
8087096 ATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
8087120 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
8087144 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
8087167 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
24 101 0.89
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:8087260 original size:20 final size:21
Alignment explanation
Indices: 8087216--8087272 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
8087206 TTATGATTAC
* *
8087216 ATCATGTGCATTTCTTA-CAT
1 ATCATGTGCATATCATATCAT
8087236 ATCATGTGCATATCATATCAT
1 ATCATGTGCATATCATATCAT
8087257 -TCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
8087273 CCACGTATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 10 0.29
20 21 0.62
21 3 0.09
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.42
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAT
Found at i:8092698 original size:12 final size:12
Alignment explanation
Indices: 8092643--8092709 Score: 52
Period size: 12 Copynumber: 5.7 Consensus size: 12
8092633 CTGTAAAATA
8092643 AAAAT-AAA-AT
1 AAAATAAAAGAT
*
8092653 AAAATAAAAGAG
1 AAAATAAAAGAT
*
8092665 AAGATAAAAGA-
1 AAAATAAAAGAT
*
8092676 AAAACGAAAAAGAT
1 AAAA--TAAAAGAT
8092690 AAAATAAAA-AT
1 AAAATAAAAGAT
8092701 AAAAATAAA
1 -AAAATAAA
8092710 TGGACCCAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
10 5 0.11
11 8 0.17
12 23 0.50
13 6 0.13
14 4 0.09
ACGTcount: A:0.78, C:0.01, G:0.09, T:0.12
Consensus pattern (12 bp):
AAAATAAAAGAT
Found at i:8098968 original size:10 final size:10
Alignment explanation
Indices: 8098953--8098986 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
8098943 ACTTTGGAAT
8098953 GCCCAAAATA
1 GCCCAAAATA
8098963 GCCCAAAATA
1 GCCCAAAATA
8098973 GCCCAAAATTA
1 GCCCAAAA-TA
8098984 GCC
1 GCC
8098987 TTTTCTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.78
11 5 0.22
ACGTcount: A:0.44, C:0.32, G:0.12, T:0.12
Consensus pattern (10 bp):
GCCCAAAATA
Found at i:8099570 original size:26 final size:26
Alignment explanation
Indices: 8099534--8099605 Score: 108
Period size: 26 Copynumber: 2.7 Consensus size: 26
8099524 TCTTCAAGCG
8099534 AAATTCTCAACTCACAATTAAAATTA
1 AAATTCTCAACTCACAATTAAAATTA
8099560 AAATTCTCAACTCACAATTAAAATTA
1 AAATTCTCAACTCACAATTAAAATTA
* * *
8099586 AACTTTCTCAATTCATAATT
1 AA-ATTCTCAACTCACAATT
8099606 CTCATCAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 28 0.67
27 14 0.33
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (26 bp):
AAATTCTCAACTCACAATTAAAATTA
Found at i:8101197 original size:6 final size:6
Alignment explanation
Indices: 8101171--8101234 Score: 83
Period size: 6 Copynumber: 10.5 Consensus size: 6
8101161 GAAGTCTAAG
* * * *
8101171 AAAATA CAAATA AATAGA AAAATA AAAATA AAAACTA AGAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA-TA AAAATA AAAATA
8101220 AAAATA AAAATA AAA
1 AAAATA AAAATA AAA
8101235 GAAAACAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
6 44 0.90
7 5 0.10
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:8102867 original size:10 final size:11
Alignment explanation
Indices: 8102849--8102916 Score: 63
Period size: 10 Copynumber: 6.1 Consensus size: 11
8102839 AATAGAGAAC
8102849 AATAGATAATAA
1 AATA-ATAATAA
8102861 AA-AATAAATAA
1 AATAAT-AATAA
8102872 AATAA-AATAA
1 AATAATAATAA
8102882 AATAACTAAT--
1 AATAA-TAATAA
8102892 AATAATAATAAA
1 AATAATAAT-AA
8102904 AATAAATAATAA
1 AAT-AATAATAA
8102916 A
1 A
8102917 GAAAATAGGG
Statistics
Matches: 48, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
9 4 0.08
10 17 0.35
11 8 0.17
12 13 0.27
13 6 0.12
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.24
Consensus pattern (11 bp):
AATAATAATAA
Found at i:8102877 original size:16 final size:16
Alignment explanation
Indices: 8102856--8102923 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 16
8102846 AACAATAGAT
8102856 AATAAAAAATAAATAA
1 AATAAAAAATAAATAA
*
8102872 AATAAAATA-AAATAA
1 AATAAAAAATAAATAA
*
8102887 CTAAT-AATAAT-AATAAA
1 --AATAAAAAATAAAT-AA
* *
8102904 AATAAATAATAAAGAA
1 AATAAAAAATAAATAA
8102920 AATA
1 AATA
8102924 GGGTAATGGG
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
15 9 0.21
16 26 0.62
17 7 0.17
ACGTcount: A:0.75, C:0.01, G:0.01, T:0.22
Consensus pattern (16 bp):
AATAAAAAATAAATAA
Found at i:8102896 original size:3 final size:3
Alignment explanation
Indices: 8102849--8102915 Score: 54
Period size: 3 Copynumber: 22.7 Consensus size: 3
8102839 AATAGAGAAC
8102849 AAT AGAT AAT AA- AA- AAT AAAT AA- AAT AA- AAT AA- AAT AACT AAT
1 AAT A-AT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AA-T AAT
*
8102892 AAT AAT AAT AAA AAT AAAT AAT AA
1 AAT AAT AAT AAT AAT -AAT AAT AA
8102916 AGAAAATAGG
Statistics
Matches: 54, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
2 10 0.19
3 32 0.59
4 12 0.22
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.24
Consensus pattern (3 bp):
AAT
Found at i:8102923 original size:22 final size:21
Alignment explanation
Indices: 8102860--8102923 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
8102850 ATAGATAATA
*
8102860 AAAAATAAATAA-AATAAAAT
1 AAAAATAAATAATAAAAAAAT
* *
8102880 -AAAATAACTAATAATAATAAT
1 AAAAATAAATAATAA-AAAAAT
8102901 AAAAATAAATAATAAAGAAAAT
1 AAAAATAAATAATAAA-AAAAT
8102923 A
1 A
8102924 GGGTAATGGG
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 10 0.29
20 2 0.06
21 5 0.14
22 18 0.51
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (21 bp):
AAAAATAAATAATAAAAAAAT
Found at i:8118167 original size:47 final size:47
Alignment explanation
Indices: 8118098--8118189 Score: 166
Period size: 47 Copynumber: 2.0 Consensus size: 47
8118088 CATTAAAGCT
*
8118098 TAGTAAGTCCATATGCAAATAACATGCTACCTAAACAAGTATTTACC
1 TAGTAAGTCCATATGCAAATAACATGCTACCTAAAAAAGTATTTACC
*
8118145 TAGTAAGTCCATATGCAAATAACATGCTACTTAAAAAAGTATTTA
1 TAGTAAGTCCATATGCAAATAACATGCTACCTAAAAAAGTATTTA
8118190 ACATACACAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.29
Consensus pattern (47 bp):
TAGTAAGTCCATATGCAAATAACATGCTACCTAAAAAAGTATTTACC
Found at i:8130826 original size:34 final size:33
Alignment explanation
Indices: 8130783--8130848 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 33
8130773 GCATTATTGA
*
8130783 TATTGTACTG-AATTGGGCTAAGGCTCACACTGT
1 TATTGTACTGTAA-TGGGCTAAGGCCCACACTGT
8130816 TATTGCTACTGTAATGGGCTAAGGCCCACACTG
1 TATTG-TACTGTAATGGGCTAAGGCCCACACTG
8130849 ATACTACTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 5 0.17
34 23 0.77
35 2 0.07
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (33 bp):
TATTGTACTGTAATGGGCTAAGGCCCACACTGT
Found at i:8130869 original size:34 final size:33
Alignment explanation
Indices: 8130788--8130858 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 33
8130778 ATTGATATTG
* *
8130788 TACTG-AATTGGGCTAAGGCTCACACTGTTATTGC
1 TACTGTAA-TGGGCTAAGGCCCACACTG-TATTAC
8130822 TACTGTAATGGGCTAAGGCCCACACTG-A-TAC
1 TACTGTAATGGGCTAAGGCCCACACTGTATTAC
8130853 TACTGT
1 TACTGT
8130859 GGATATGGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 8 0.24
32 1 0.03
34 23 0.68
35 2 0.06
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (33 bp):
TACTGTAATGGGCTAAGGCCCACACTGTATTAC
Found at i:8149468 original size:19 final size:18
Alignment explanation
Indices: 8149446--8149481 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8149436 AATAAAAGAA
8149446 AAACTAGAAAACAAAAATT
1 AAACTA-AAAACAAAAATT
*
8149465 AAACTAAAAATAAAAAT
1 AAACTAAAAACAAAAAT
8149482 AAAATGCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.72, C:0.08, G:0.03, T:0.17
Consensus pattern (18 bp):
AAACTAAAAACAAAAATT
Found at i:8156908 original size:43 final size:44
Alignment explanation
Indices: 8156859--8157025 Score: 216
Period size: 43 Copynumber: 3.9 Consensus size: 44
8156849 GATTACCGAG
* *
8156859 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCGTTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
8156903 -TGTGATTGCGTGTAAGACCATGTCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
8156945 ATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
8156988 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
8157026 TGTACGAGCT
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 7 0.06
43 102 0.94
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:8159950 original size:11 final size:12
Alignment explanation
Indices: 8159934--8159963 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
8159924 ATGTGGTAGG
8159934 CCGTGTGTC-AC
1 CCGTGTGTCTAC
8159945 CCGTGTGTCTAC
1 CCGTGTGTCTAC
8159957 CCGTGTG
1 CCGTGTG
8159964 GACGAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.50
12 9 0.50
ACGTcount: A:0.07, C:0.33, G:0.30, T:0.30
Consensus pattern (12 bp):
CCGTGTGTCTAC
Found at i:8160683 original size:53 final size:52
Alignment explanation
Indices: 8160616--8160781 Score: 172
Period size: 52 Copynumber: 3.1 Consensus size: 52
8160606 TCTTACACGG
* **
8160616 ATCACATATCATACCGATGCCATATCCCATATATGGTCTTATACGGAGGCACATT
1 ATCACAT-T-ATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGGCACA-T
* * * *
8160671 ATCACATTATACCAATGCCATAGCCCAGCCATGGTCTTATATGG-GAGTACAT
1 ATCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAG-GCACAT
* ** * * *
8160723 ATCACAATGCACAGATGCCATAGCCAAGCTATGGTCTTATACGGATGCACAT
1 ATCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGGCACAT
8160775 ATCACAT
1 ATCACAT
8160782 CTATTCCGTC
Statistics
Matches: 91, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
52 49 0.54
53 34 0.37
54 1 0.01
55 7 0.08
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (52 bp):
ATCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGGCACAT
Found at i:8163872 original size:12 final size:12
Alignment explanation
Indices: 8163857--8163890 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8163847 TATGTTTTAT
8163857 TATATATGTATA
1 TATATATGTATA
*
8163869 TATACATGTATA
1 TATATATGTATA
*
8163881 TATTTATGTA
1 TATATATGTA
8163891 GTTTTATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (12 bp):
TATATATGTATA
Found at i:8163965 original size:13 final size:13
Alignment explanation
Indices: 8163930--8164005 Score: 50
Period size: 13 Copynumber: 6.0 Consensus size: 13
8163920 ATTATTTCTA
* *
8163930 ATATGTATATATT
1 ATATATATATTTT
* *
8163943 ATGTAAATATTTT
1 ATATATATATTTT
*
8163956 A-ATACTATATTAT
1 ATATA-TATATTTT
8163969 ATATATATA-TTT
1 ATATATATATTTT
*
8163981 ACATAT-TATTTT
1 ATATATATATTTT
**
8163993 ACGTATATATTTT
1 ATATATATATTTT
8164006 TTAATAACTA
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
11 2 0.04
12 17 0.35
13 27 0.55
14 3 0.06
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (13 bp):
ATATATATATTTT
Found at i:8164066 original size:25 final size:25
Alignment explanation
Indices: 8163937--8164125 Score: 142
Period size: 25 Copynumber: 7.7 Consensus size: 25
8163927 CTAATATGTA
*
8163937 TATATTATGTAAATA-TTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* * *
8163961 TATATTATATATATATATTTACATAT
1 TATATTATGTATATATTTTTA-ATAC
* *
8163987 TATTTTACGTATATATTTTTTAATAAC
1 TATATTATGTATATA-TTTTTAAT-AC
* **
8164014 TATATTATGTATGTATTTTTAACGC
1 TATATTATGTATATATTTTTAATAC
*
8164039 TATATTATGTACATATTTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* ** * *
8164064 TAT-GTA--TATA-ACATTTATTCC
1 TATATTATGTATATATTTTTAATAC
*
8164085 TATTATTACGTATATA-TTTTAATAC
1 TA-TATTATGTATATATTTTTAATAC
8164110 -ATA-TATGTATATATTT
1 TATATTATGTATATATTT
8164126 ATATATCGTT
Statistics
Matches: 126, Mismatches: 29, Indels: 21
0.72 0.16 0.12
Matches are distributed among these distances:
21 9 0.07
22 13 0.10
23 6 0.05
24 16 0.13
25 39 0.31
26 25 0.20
27 18 0.14
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (25 bp):
TATATTATGTATATATTTTTAATAC
Found at i:8166851 original size:240 final size:239
Alignment explanation
Indices: 8166422--8166885 Score: 820
Period size: 240 Copynumber: 1.9 Consensus size: 239
8166412 CATCCGAGCT
* * * *
8166422 AGAAGTAACAAGACACGAATTTGAACGTGAAAAGGCTAAGTTGTTATGGGATATCAGCTCTCTTC
1 AGAAGTAACAAGACACAAATTTGAACATGAAAAGACTAAGTTGTTACGGGATATCAGCTCTCTTC
*
8166487 AAGAGGAAAACTACCAGCTAAAGATCGATGTTCAGATTGAAAAGTCCCAAACCGTGAAAATCCAA
66 AAGAGGAAAACTACCAGCTAAAGATCGATATTCAGATTGAAAAGTCCCAAACCGTGAAAATCCAA
8166552 AAAGAAGCTGAGATCGTGAGAAATGACTTAAGGGACCTTCATTTGGAAAATAAGAAATTAAGAAG
131 AAAGAAGCTGAGATCGTGAGAAATGACTTAAGGGACCTTCATTTGGAAAATAAGAAATTAAGAAG
8166617 CACTATTAAAAAATAGTGGGTTGGGCAAATTAAGAAGCACTATTA
196 CACTA-TAAAAAATAGTGGGTTGGGCAAATTAAGAAGCACTATTA
* * *
8166662 AGAAGTACCAAGACACAAATTTGAACATGAAAAGACTAATTTGTTACGGGATATCAGCTCTCTTT
1 AGAAGTAACAAGACACAAATTTGAACATGAAAAGACTAAGTTGTTACGGGATATCAGCTCTCTTC
8166727 AAGAGGAAAACTACCAGCTAAAGATCGATATTCAGATTGAAAAGTCCCAAACCGTGAAAATCCAA
66 AAGAGGAAAACTACCAGCTAAAGATCGATATTCAGATTGAAAAGTCCCAAACCGTGAAAATCCAA
* * *
8166792 AGAGAAGCTGAGATCGTGAGAAATGACTTAATGGACCTTCATTTGGAAAATAGGAAATTAAGAAG
131 AAAGAAGCTGAGATCGTGAGAAATGACTTAAGGGACCTTCATTTGGAAAATAAGAAATTAAGAAG
8166857 CACTATAAAAAATAGTGGGTTGGGCAAAT
196 CACTATAAAAAATAGTGGGTTGGGCAAAT
8166886 CGTCGGCAGA
Statistics
Matches: 213, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
239 24 0.11
240 189 0.89
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.23
Consensus pattern (239 bp):
AGAAGTAACAAGACACAAATTTGAACATGAAAAGACTAAGTTGTTACGGGATATCAGCTCTCTTC
AAGAGGAAAACTACCAGCTAAAGATCGATATTCAGATTGAAAAGTCCCAAACCGTGAAAATCCAA
AAAGAAGCTGAGATCGTGAGAAATGACTTAAGGGACCTTCATTTGGAAAATAAGAAATTAAGAAG
CACTATAAAAAATAGTGGGTTGGGCAAATTAAGAAGCACTATTA
Found at i:8175879 original size:75 final size:75
Alignment explanation
Indices: 8175799--8176370 Score: 662
Period size: 75 Copynumber: 7.3 Consensus size: 75
8175789 TTTCTGTTTC
* *
8175799 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
8175864 TGTCTTTCAA
66 TGTCTTTCAA
* * *
8175874 AAAAATCAACTCATATTGCGAGAGGTAAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
8175939 TGTCTTTCAA
66 TGTCTTTCAA
* * * *
8175949 AAAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
8176014 TGTCTTT-AA
66 TGTCTTTCAA
* *
8176023 AAAAACTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTTTAATT
1 AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAATT
8176088 TCTGTCTTTCAA
64 TCTGTCTTTCAA
* * * *
8176100 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-TGCTCACATGCTGTGGTGTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGCTGAGGTATTTTCAAT
*
8176164 TTCTGTTTTTCAA
63 TTCTGTCTTTCAA
* * *
8176177 TTTCTGTTCGTCAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCATGACACGCTGAGGTA
1 -----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA
* * ***
8176242 TTTTCAATTTTCATTTTTTATGTTTC
55 TTTTCAA-TTTC--TGTCT-T-TCAA
* **
8176268 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* *
8176333 TGTTTTTTTAA
66 TG-TCTTTCAA
8176344 AAAAATCAAGCTCATATTGCGAGAGGT
1 AAAAATCAA-CTCATATTGCGAGAGGT
8176371 CATACGCTGA
Statistics
Matches: 435, Mismatches: 37, Indels: 48
0.84 0.07 0.09
Matches are distributed among these distances:
74 7 0.02
75 186 0.43
76 60 0.14
77 44 0.10
78 13 0.03
79 4 0.01
80 56 0.13
86 17 0.04
87 4 0.01
88 36 0.08
89 6 0.01
90 1 0.00
91 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
TGTCTTTCAA
Found at i:8176175 original size:14 final size:14
Alignment explanation
Indices: 8176156--8176184 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8176146 TGCTGTGGTG
8176156 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
8176170 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
8176184 T
1 T
8176185 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:8176295 original size:80 final size:76
Alignment explanation
Indices: 8176189--8176370 Score: 256
Period size: 80 Copynumber: 2.3 Consensus size: 76
8176179 TCTGTTCGTC
*
8176189 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCATGACACGCTGAGGTATTTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCATGACACGCTGAGGTATTTTCAA-TTTC
**
8176254 ATTTTTTATGTTTCA
65 -TTTTTT-T-TTAAA
* **
8176269 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCATGACACGCTGAGGTATTTTCAATTTCT
*
8176334 GTTTTTTTAAA
66 TTTTTTTTAAA
8176345 AAAATCAAGCTCATATTGCGAGAGGT
1 AAAATCAA-CTCATATTGCGAGAGGT
8176371 CATACGCTGA
Statistics
Matches: 93, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
76 11 0.12
77 17 0.18
78 5 0.05
79 4 0.04
80 56 0.60
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCATGACACGCTGAGGTATTTTCAATTTCT
TTTTTTTTAAA
Found at i:8177458 original size:28 final size:28
Alignment explanation
Indices: 8177427--8177520 Score: 77
Period size: 28 Copynumber: 3.2 Consensus size: 28
8177417 TATGTATATA
8177427 TTATGTAAATATTTTAATACTATATTAT
1 TTATGTAAATATTTTAATACTATATTAT
*
8177455 TTATATATATATATTTT--TAC-ATATTATT
1 TTATGTA-A-ATATTTTAATACTATATTA-T
* *
8177483 TTATGCATATATTTTTTAATAACTATATTAT
1 TTATG--TAAATATTTTAAT-ACTATATTAT
*
8177514 GTATGTA
1 TTATGTA
8177521 TTTTTAACGC
Statistics
Matches: 52, Mismatches: 5, Indels: 17
0.70 0.07 0.23
Matches are distributed among these distances:
27 6 0.12
28 20 0.38
29 3 0.06
30 10 0.19
31 7 0.13
32 6 0.12
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.55
Consensus pattern (28 bp):
TTATGTAAATATTTTAATACTATATTAT
Found at i:8177463 original size:13 final size:13
Alignment explanation
Indices: 8177421--8177483 Score: 51
Period size: 14 Copynumber: 4.9 Consensus size: 13
8177411 TTCTAATATG
*
8177421 TATATATTATGTA
1 TATATATTATTTA
*
8177434 -A-ATATT-TTAA
1 TATATATTATTTA
8177444 TACTATATTATTTA
1 TA-TATATTATTTA
*
8177458 TATATATATATTTT
1 TATATAT-TATTTA
*
8177472 TACATATTATTT
1 TATATATTATTT
8177484 TATGCATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
10 2 0.05
11 6 0.15
12 1 0.03
13 15 0.38
14 16 0.40
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (13 bp):
TATATATTATTTA
Found at i:8177511 original size:32 final size:30
Alignment explanation
Indices: 8177435--8177513 Score: 94
Period size: 28 Copynumber: 2.7 Consensus size: 30
8177425 TATTATGTAA
8177435 ATATTTTAATACTATATTATTTATATATAT
1 ATATTTTAATACTATATTATTTATATATAT
8177465 ATATTTT--TAC-ATATTATTT-TATGCATAT
1 ATATTTTAATACTATATTATTTATAT--ATAT
*
8177493 ATTTTTTAATAACTATATTAT
1 ATATTTTAAT-ACTATATTAT
8177514 GTATGTATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
26 3 0.07
27 9 0.21
28 13 0.31
30 8 0.19
31 2 0.05
32 7 0.17
ACGTcount: A:0.37, C:0.05, G:0.01, T:0.57
Consensus pattern (30 bp):
ATATTTTAATACTATATTATTTATATATAT
Found at i:8177558 original size:25 final size:25
Alignment explanation
Indices: 8177462--8177617 Score: 112
Period size: 25 Copynumber: 6.4 Consensus size: 25
8177452 TATTTATATA
* *
8177462 TATATATTTTTACATATTATTTTATG
1 TATATATTTTTA-ATACTATATTATG
*
8177488 CATATATTTTTTAATAACTATATTATG
1 TATATA-TTTTTAAT-ACTATATTATG
* **
8177515 TATGTATTTTTAACGCTATATTATG
1 TATATATTTTTAATACTATATTATG
*
8177540 TACATATTTTTAATAC-----TATG
1 TATATATTTTTAATACTATATTATG
* * * *
8177560 TATATACCTTTTATTCCTATTATTACG
1 TATATA-TTTTTAATACTA-TATTATG
8177587 TATATA-TTTTAATAC-ATA-TATG
1 TATATATTTTTAATACTATATTATG
8177609 TATATATTT
1 TATATATTT
8177618 ATATATCGTT
Statistics
Matches: 101, Mismatches: 19, Indels: 23
0.71 0.13 0.16
Matches are distributed among these distances:
20 9 0.09
21 7 0.07
22 9 0.09
23 4 0.04
24 1 0.01
25 29 0.29
26 14 0.14
27 28 0.28
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (25 bp):
TATATATTTTTAATACTATATTATG
Found at i:8177659 original size:18 final size:18
Alignment explanation
Indices: 8177627--8177670 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
8177617 TATATATCGT
* * *
8177627 TATTATTAGTTTTTTTTA
1 TATTATTACTGTTTTTAA
8177645 TATTATTACTGTTTTTAA
1 TATTATTACTGTTTTTAA
8177663 TATATATT
1 TAT-TATT
8177671 GTATATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (18 bp):
TATTATTACTGTTTTTAA
Found at i:8184219 original size:20 final size:21
Alignment explanation
Indices: 8184194--8184232 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8184184 TCGTTATTAT
*
8184194 TATTATTAGTA-TATTTTTAC
1 TATTATTAGAATTATTTTTAC
8184214 TATTATTAGAATTATTTTT
1 TATTATTAGAATTATTTTT
8184233 TTTAGTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (21 bp):
TATTATTAGAATTATTTTTAC
Found at i:8184453 original size:10 final size:10
Alignment explanation
Indices: 8184438--8184462 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8184428 TATGTTTTAT
8184438 TATATATGTA
1 TATATATGTA
8184448 TATATATGTA
1 TATATATGTA
8184458 TATAT
1 TATAT
8184463 TTATGTAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TATATATGTA
Found at i:8184650 original size:25 final size:25
Alignment explanation
Indices: 8184517--8184709 Score: 118
Period size: 25 Copynumber: 7.7 Consensus size: 25
8184507 CTAATATGTA
* *
8184517 TATATTAAGTAAATA-TTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* *
8184541 TATATTATTTATATATATATATT-CTAC
1 TATATTATGTATATAT-T-T-TTAATAC
8184568 ATATTATTTATGTATATATTTTTTAATAAC
1 -TA-TA-TTATGTATATA-TTTTTAAT-AC
* **
8184598 TATATTATGTATGTATTTTTAACGC
1 TATATTATGTATATATTTTTAATAC
*
8184623 TATATTATGTACATATTTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* * *
8184648 -----TATGTATATACCTTTTATTCC
1 TATATTATGTATATA-TTTTTAATAC
*
8184669 TATTATTACGTATATA-TTTTAATAC
1 TA-TATTATGTATATATTTTTAATAC
8184694 -ATA-TATGTATATATTT
1 TATATTATGTATATATTT
8184710 ATATATCGTT
Statistics
Matches: 130, Mismatches: 21, Indels: 37
0.69 0.11 0.20
Matches are distributed among these distances:
20 9 0.07
21 7 0.05
22 9 0.07
23 4 0.03
24 13 0.10
25 29 0.22
26 8 0.06
27 23 0.18
28 8 0.06
29 6 0.05
30 13 0.10
31 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (25 bp):
TATATTATGTATATATTTTTAATAC
Found at i:8194261 original size:52 final size:52
Alignment explanation
Indices: 8194152--8194282 Score: 151
Period size: 52 Copynumber: 2.5 Consensus size: 52
8194142 TCCCATATAT
* *
8194152 GGTCTTATAC-GGAGACACATTATCAC-AT-CATACCGATGCCATAACCCAGCCAT
1 GGTCTTATACGGGAG-CACA-TATCACAATGC--ACCGATGCCATAACCCAACCAA
* *
8194205 GGTCTTATACGGGAGTACATATCACAATGCACCGATGCCATAGCCCAACCAA
1 GGTCTTATACGGGAGCACATATCACAATGCACCGATGCCATAACCCAACCAA
* *
8194257 GGTCTTATATGGGTGCACATATCACA
1 GGTCTTATACGGGAGCACATATCACA
8194283 CCTATTCCGT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
52 48 0.71
53 15 0.22
54 5 0.07
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (52 bp):
GGTCTTATACGGGAGCACATATCACAATGCACCGATGCCATAACCCAACCAA
Found at i:8196161 original size:24 final size:24
Alignment explanation
Indices: 8196134--8196186 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
8196124 ATTATTTCAT
* * *
8196134 TTATTATTATGATTAGTGTTATTA
1 TTATTACTATGATTAGTCTAATTA
*
8196158 TTATTACTATTATTAGTCTAATTA
1 TTATTACTATGATTAGTCTAATTA
8196182 TTATT
1 TTATT
8196187 GTGTTGATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.30, C:0.04, G:0.08, T:0.58
Consensus pattern (24 bp):
TTATTACTATGATTAGTCTAATTA
Found at i:8209419 original size:19 final size:18
Alignment explanation
Indices: 8209397--8209432 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8209387 AATAAAAGAA
8209397 AAACTAGAAAACAAAAATT
1 AAACTA-AAAACAAAAATT
*
8209416 AAACTAAAAATAAAAAT
1 AAACTAAAAACAAAAAT
8209433 AAAATGCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.72, C:0.08, G:0.03, T:0.17
Consensus pattern (18 bp):
AAACTAAAAACAAAAATT
Found at i:8214717 original size:12 final size:13
Alignment explanation
Indices: 8214692--8214720 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8214682 ATTATTTTCC
8214692 GTGTTTATAGTAT
1 GTGTTTATAGTAT
8214705 GTGTTTA-AGTAT
1 GTGTTTATAGTAT
8214717 GTGT
1 GTGT
8214721 GAACGTATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.52
Consensus pattern (13 bp):
GTGTTTATAGTAT
Found at i:8215123 original size:44 final size:41
Alignment explanation
Indices: 8215072--8215214 Score: 139
Period size: 44 Copynumber: 3.3 Consensus size: 41
8215062 GTATGTGAAA
*
8215072 TCGTGTAAGACCACATCTGGGACGTTGGCATCGATTTGGTTTT
1 TCGTGTAAGACCACATCTGGGACGTTGGCATCGATTT-G-ATT
* *
8215115 TACGTGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACATCTGGGACGTTGGCATCG-ATTTGATT
*
8215158 TCGTGTAAGACC-CTATCTGAGACAG-TGGCATCGATATTTGATT
1 TCGTGTAAGACCAC-ATCTGGGAC-GTTGGCATCG--ATTTGATT
*
8215201 AT-ATGTAAGACCAC
1 -TCGTGTAAGACCAC
8215215 GTCTAGGATG
Statistics
Matches: 86, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 25 0.29
43 23 0.27
44 33 0.38
45 4 0.05
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (41 bp):
TCGTGTAAGACCACATCTGGGACGTTGGCATCGATTTGATT
Found at i:8215231 original size:43 final size:42
Alignment explanation
Indices: 8215075--8215231 Score: 135
Period size: 44 Copynumber: 3.7 Consensus size: 42
8215065 TGTGAAATCG
* * *
8215075 TGTAAGACCACATCTGGGACGTTGGCATCGAT-TTGGTTTTTA
1 TGTAAGACCACATCTAGGACGTTGGCATCGATATTTG-ATTTA
* *
8215117 CGTGTAAGACCACGTCTAGGACGTTGGCATCG-TATTTGATTTCG
1 --TGTAAGACCACATCTAGGACGTTGGCATCGATATTTGATTT-A
8215161 TGTAAGACC-CTATCT-GAGACAG-TGGCATCGATATTTGATTATA
1 TGTAAGACCAC-ATCTAG-GAC-GTTGGCATCGATATTTGATT-TA
* * *
8215204 TGTAAGACCACGTCTAGGATGTCGGCAT
1 TGTAAGACCACATCTAGGACGTTGGCAT
8215232 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
41 2 0.02
42 24 0.26
43 33 0.35
44 34 0.37
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACATCTAGGACGTTGGCATCGATATTTGATTTA
Found at i:8215246 original size:86 final size:85
Alignment explanation
Indices: 8215072--8215239 Score: 198
Period size: 85 Copynumber: 2.0 Consensus size: 85
8215062 GTATGTGAAA
* * *
8215072 TCGTGTAAGACCACATCTGGGACGTTGGCATCGATTTGGTTTTTACGTGTAAGACCACGTCTAGG
1 TCGTGTAAGACCACATCTGAGACGTTGGCATCGATTTGGATTATAC-TGTAAGACCACGTCTAGG
* **
8215137 ACGTTGGCATCGTATTTGATT
65 ACGTCGGCATCGTATGAGATT
*
8215158 TCGTGTAAGACC-CTATCTGAGACAG-TGGCATCGATATTTGATTATA-TGTAAGACCACGTCTA
1 TCGTGTAAGACCAC-ATCTGAGAC-GTTGGCATCGAT-TTGGATTATACTGTAAGACCACGTCTA
* *
8215220 GGATGTCGGCATTGTATGAG
63 GGACGTCGGCATCGTATGAG
8215240 CTTTTCGAGC
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
85 32 0.46
86 30 0.43
87 8 0.11
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (85 bp):
TCGTGTAAGACCACATCTGAGACGTTGGCATCGATTTGGATTATACTGTAAGACCACGTCTAGGA
CGTCGGCATCGTATGAGATT
Found at i:8221778 original size:15 final size:15
Alignment explanation
Indices: 8221750--8221787 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
8221740 CTTTATTTTC
8221750 TTTATTTT-CTTTAT
1 TTTATTTTACTTTAT
8221764 TTTATTTTACTTTAT
1 TTTATTTTACTTTAT
*
8221779 TTTAGTTTA
1 TTTATTTTA
8221788 ATTCTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTATTTTACTTTAT
Found at i:8221782 original size:10 final size:9
Alignment explanation
Indices: 8221727--8221766 Score: 71
Period size: 9 Copynumber: 4.3 Consensus size: 9
8221717 TTGGTTCTTC
8221727 TTTCATTTAT
1 TTTC-TTTAT
8221737 TTTCTTTAT
1 TTTCTTTAT
8221746 TTTCTTTAT
1 TTTCTTTAT
8221755 TTTCTTTAT
1 TTTCTTTAT
8221764 TTT
1 TTT
8221767 ATTTTACTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 26 0.87
10 4 0.13
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTCTTTAT
Found at i:8221787 original size:10 final size:10
Alignment explanation
Indices: 8221732--8221787 Score: 55
Period size: 9 Copynumber: 5.9 Consensus size: 10
8221722 TCTTCTTTCA
8221732 TTTATTTT-C
1 TTTATTTTAC
8221741 TTTATTTT-C
1 TTTATTTTAC
8221750 TTTATTTT-C
1 TTTATTTTAC
*
8221759 TTTATTTTAT
1 TTTATTTTAC
* *
8221769 TTTACTTTAT
1 TTTATTTTAC
*
8221779 TTTAGTTTA
1 TTTATTTTA
8221788 ATTCTTTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
9 26 0.60
10 17 0.40
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (10 bp):
TTTATTTTAC
Found at i:8227078 original size:13 final size:13
Alignment explanation
Indices: 8227060--8227084 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8227050 CTTCAATTTC
8227060 AGTATTTTCCAAA
1 AGTATTTTCCAAA
8227073 AGTATTTTCCAA
1 AGTATTTTCCAA
8227085 CTCTTATCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
AGTATTTTCCAAA
Found at i:8233411 original size:33 final size:32
Alignment explanation
Indices: 8233362--8233425 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
8233352 CTCGTTGCAA
* *
8233362 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
8233395 TCTGGTGGCCTAGCCACAATATTTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
8233426 GTGACTTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:8235619 original size:21 final size:21
Alignment explanation
Indices: 8235580--8235619 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8235570 CTGTGTTTAG
* *
8235580 AGGTTCGACAGTCTTGATGCA
1 AGGTTCGACAGTATCGATGCA
8235601 AGGTTCGACAGTATCGATG
1 AGGTTCGACAGTATCGATG
8235620 AAACTTTGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (21 bp):
AGGTTCGACAGTATCGATGCA
Found at i:8235723 original size:6 final size:6
Alignment explanation
Indices: 8235712--8235751 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
8235702 AGTCCACTTA
* *
8235712 TTTTAT TTTTAT TTTTAT TTTTAT CTTT-C TTTTAT TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
8235752 AAAACTTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 3 0.10
6 26 0.90
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:8236728 original size:4 final size:4
Alignment explanation
Indices: 8236721--8236766 Score: 83
Period size: 4 Copynumber: 11.5 Consensus size: 4
8236711 CTTAAAAAAA
*
8236721 ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
8236767 TTTAGTAGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (4 bp):
ATAC
Found at i:8240762 original size:12 final size:12
Alignment explanation
Indices: 8240745--8240769 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8240735 TTGTGTGTTC
8240745 TTTATTTTATTT
1 TTTATTTTATTT
8240757 TTTATTTTATTT
1 TTTATTTTATTT
8240769 T
1 T
8240770 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:8242992 original size:11 final size:11
Alignment explanation
Indices: 8242972--8243001 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8242962 TCCTCTGTTT
8242972 CTTCACCGTCC
1 CTTCACCGTCC
*
8242983 CTTCATCGTCC
1 CTTCACCGTCC
8242994 CTTCACCG
1 CTTCACCG
8243002 CCGTCTACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.10, C:0.50, G:0.10, T:0.30
Consensus pattern (11 bp):
CTTCACCGTCC
Found at i:8243075 original size:5 final size:5
Alignment explanation
Indices: 8243065--8243116 Score: 50
Period size: 5 Copynumber: 9.6 Consensus size: 5
8243055 TTTTTTGTTG
* *
8243065 TATTT TATTT TATTT AATATTA TATTT TTTTAT TATTT TATTT TATTAT
1 TATTT TATTT TATTT --TATTT TATTT TATT-T TATTT TATTT TATT-T
8243114 TAT
1 TAT
8243117 GATGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
5 27 0.69
6 8 0.21
7 4 0.10
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (5 bp):
TATTT
Found at i:8243100 original size:13 final size:13
Alignment explanation
Indices: 8243069--8243114 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 13
8243059 TTGTTGTATT
8243069 TTATTTTATTTAATA
1 TTATTTTATTT--TA
8243084 TTATATTT-TTTTA
1 TTAT-TTTATTTTA
8243097 TTATTTTATTTTA
1 TTATTTTATTTTA
8243110 TTATT
1 TTATT
8243115 ATGATGATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 3 0.10
13 16 0.55
15 7 0.24
16 3 0.10
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:8243101 original size:16 final size:16
Alignment explanation
Indices: 8243065--8243116 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
8243055 TTTTTTGTTG
*
8243065 TATTTTATTTTATTTAA
1 TATTTTATTTT-TTTAT
*
8243082 TATTATATTTTTTTAT
1 TATTTTATTTTTTTAT
*
8243098 TATTTTATTTTATTAT
1 TATTTTATTTTTTTAT
8243114 TAT
1 TAT
8243117 GATGATGTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 21 0.68
17 10 0.32
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TATTTTATTTTTTTAT
Found at i:8247066 original size:8 final size:8
Alignment explanation
Indices: 8247053--8247083 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
8247043 TTTATTTTAT
8247053 TTTATTTC
1 TTTATTTC
8247061 TTTATTTC
1 TTTATTTC
8247069 TTTATTTC
1 TTTATTTC
8247077 TTTATTT
1 TTTATTT
8247084 GTTTGTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTATTTC
Found at i:8247336 original size:9 final size:9
Alignment explanation
Indices: 8247294--8247336 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
8247284 ATTAATCTAT
*
8247294 TTTTTATTA
1 TTTTTATTG
8247303 TTTGTTCATTG
1 TTT-TT-ATTG
8247314 TTTTTATTG
1 TTTTTATTG
*
8247323 CTTTTATTG
1 TTTTTATTG
8247332 TTTTT
1 TTTTT
8247337 GTTCTTAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 19 0.66
10 4 0.14
11 6 0.21
ACGTcount: A:0.12, C:0.05, G:0.09, T:0.74
Consensus pattern (9 bp):
TTTTTATTG
Found at i:8248470 original size:17 final size:17
Alignment explanation
Indices: 8248450--8248482 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8248440 CAACTCGCTC
8248450 GACACTTCAATCTTCTT
1 GACACTTCAATCTTCTT
*
8248467 GACACTTCGATCTTCT
1 GACACTTCAATCTTCT
8248483 CAACACACCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.30, G:0.09, T:0.39
Consensus pattern (17 bp):
GACACTTCAATCTTCTT
Found at i:8253540 original size:15 final size:16
Alignment explanation
Indices: 8253510--8253549 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
8253500 TTCCAGTTCA
8253510 TTAATTA-TTAATTTT
1 TTAATTATTTAATTTT
*
8253525 TTATTTATTTAA-TTT
1 TTAATTATTTAATTTT
8253540 TTAATTATTT
1 TTAATTATTT
8253550 TTATTACTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTAATTATTTAATTTT
Found at i:8253578 original size:14 final size:15
Alignment explanation
Indices: 8253543--8253584 Score: 68
Period size: 14 Copynumber: 2.8 Consensus size: 15
8253533 TTAATTTTTA
8253543 ATTATTTTTATTACTG
1 ATTA-TTTTATTACTG
8253559 ATTATTTTATTACT-
1 ATTATTTTATTACTG
8253573 ATTATTTTATTA
1 ATTATTTTATTA
8253585 ATTAATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 12 0.46
15 10 0.38
16 4 0.15
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (15 bp):
ATTATTTTATTACTG
Found at i:8255214 original size:6 final size:6
Alignment explanation
Indices: 8255183--8255264 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
8255173 ATAAGGATCA
* * * *
8255183 TTTA-T TTTATT TATT-TT CTTTTTT TTTATT TTTA-T TTTATG TCTATG
1 TTTATT TTTATT T-TTATT -TTTATT TTTATT TTTATT TTTATT TTTATT
8255230 TTTATT TTTATT TTTAATTGT TTTATT TTTATT TT
1 TTTATT TTTATT TTT-A-T-T TTTATT TTTATT TT
8255265 CTTAGACTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
5 9 0.14
6 42 0.66
7 7 0.11
8 2 0.03
9 4 0.06
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:8255264 original size:5 final size:5
Alignment explanation
Indices: 8255183--8255243 Score: 52
Period size: 5 Copynumber: 11.6 Consensus size: 5
8255173 ATAAGGATCA
* * *
8255183 TTTAT TTTA- TTTAT TTTCT TTTTT TTTATT TTTAT TTTAT GTCTAT GTTTATT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT -TTTAT -TTTA-T
8255236 TTTAT TTT
1 TTTAT TTT
8255244 TAATTGTTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
4 4 0.09
5 25 0.53
6 17 0.36
7 1 0.02
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:8255302 original size:26 final size:25
Alignment explanation
Indices: 8255230--8255310 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
8255220 TATGTCTATG
*
8255230 TTTATTTTTA-TTT-TT-AA-TTGT
1 TTTATTTTTATTTTCTTAAACTTAT
*
8255251 TTTATTTTTATTTTCTTAGACTTAT
1 TTTATTTTTATTTTCTTAAACTTAT
*
8255276 TTTGTTTATTATTTT-TTAAACTATATT
1 TTTATTT-TTATTTTCTTAAACT-TA-T
8255303 TTTATTTT
1 TTTATTTT
8255311 GATGGTTGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
21 10 0.21
22 3 0.06
23 2 0.04
24 1 0.02
25 15 0.31
26 10 0.21
27 7 0.15
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTATTTTTATTTTCTTAAACTTAT
Found at i:8257439 original size:102 final size:102
Alignment explanation
Indices: 8257259--8257462 Score: 383
Period size: 102 Copynumber: 2.0 Consensus size: 102
8257249 ACTAAACTGA
*
8257259 TAACATTTGCAAACTTTGGGAAACTTGGAAAATTGTCAAACATTTAAGGGTCACATGCCCGTGTG
1 TAACATTTGCAAACTTTGGGAAACTTAGAAAATTGTCAAACATTTAAGGGTCACATGCCCGTGTG
8257324 AACAAGCCGTGTGACCAGACACGCCCGTGTCACAGGC
66 AACAAGCCGTGTGACCAGACACGCCCGTGTCACAGGC
8257361 TAACATTTGCAAACTTTGGGAAACTTAGAAAATTGTCAAACATTTAAGGGTCACATGCCCGTGTG
1 TAACATTTGCAAACTTTGGGAAACTTAGAAAATTGTCAAACATTTAAGGGTCACATGCCCGTGTG
8257426 AACAAGACC-TGTGACCAGACACGCCCGTGTCACAGGC
66 AACAAG-CCGTGTGACCAGACACGCCCGTGTCACAGGC
8257463 CATGTGAAAA
Statistics
Matches: 100, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
102 98 0.98
103 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (102 bp):
TAACATTTGCAAACTTTGGGAAACTTAGAAAATTGTCAAACATTTAAGGGTCACATGCCCGTGTG
AACAAGCCGTGTGACCAGACACGCCCGTGTCACAGGC
Found at i:8258813 original size:43 final size:43
Alignment explanation
Indices: 8258713--8258867 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 43
8258703 CAATGCCATA
* ** * * *
8258713 TCCCAGATATGGTCTTACATGTTATC--ACATATCAATGCCACTA
1 TCCCAGACATGGTCTTACATGAAATCTGA-ATA-CAAGGCCAATG
* * *
8258756 TCCCAGACAGGGTCTTACATGAAATC-GATTAACGAGGCCAATG
1 TCCCAGACATGGTCTTACATGAAATCTGAAT-ACAAGGCCAATG
* * * * *
8258799 TCTCAGATATGGTCTTACACGTAATCTGAATACAATGCCAATG
1 TCCCAGACATGGTCTTACATGAAATCTGAATACAAGGCCAATG
*
8258842 TCCCAGACATGGTCTTACATGCAATC
1 TCCCAGACATGGTCTTACATGAAATC
8258868 AAATCTTGAT
Statistics
Matches: 88, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
43 83 0.94
44 5 0.06
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGAAATCTGAATACAAGGCCAATG
Found at i:8263002 original size:4 final size:4
Alignment explanation
Indices: 8262993--8263029 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
8262983 AACTTAAGCC
8262993 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
8263030 GTACAAGCAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:8266932 original size:13 final size:13
Alignment explanation
Indices: 8266914--8266939 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8266904 AATCTCACAC
8266914 GCCCGTGTGGACT
1 GCCCGTGTGGACT
8266927 GCCCGTGTGGACT
1 GCCCGTGTGGACT
8266940 CACACACTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (13 bp):
GCCCGTGTGGACT
Found at i:8266979 original size:24 final size:24
Alignment explanation
Indices: 8266952--8267006 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
8266942 CACACTCGTG
8266952 TGGCCCACACGGCCCAAATCAGTC
1 TGGCCCACACGGCCCAAATCAGTC
*
8266976 TGGCCCACACGGTCCAAATCAGTC
1 TGGCCCACACGGCCCAAATCAGTC
8267000 TGGCCCA
1 TGGCCCA
8267007 TGTGTCACAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.24, C:0.40, G:0.22, T:0.15
Consensus pattern (24 bp):
TGGCCCACACGGCCCAAATCAGTC
Found at i:8268258 original size:12 final size:12
Alignment explanation
Indices: 8268243--8268272 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
8268233 ATTAATTAAA
8268243 TAAATTGGAAAT
1 TAAATTGGAAAT
8268255 TAAATTGGAAAT
1 TAAATTGGAAAT
8268267 TAAATT
1 TAAATT
8268273 TGAATTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (12 bp):
TAAATTGGAAAT
Found at i:8269033 original size:47 final size:48
Alignment explanation
Indices: 8268979--8269076 Score: 180
Period size: 48 Copynumber: 2.1 Consensus size: 48
8268969 ACTGACACAT
*
8268979 CAAATTGGAAGG-AAAAAAGTAATTCTTATTTAATTCCAAATGAATTC
1 CAAATTGGAAGGAAAAAAAGTAATTCTTATTTAATTCCAAATGAAGTC
8269026 CAAATTGGAAGGAAAAAAAGTAATTCTTATTTAATTCCAAATGAAGTC
1 CAAATTGGAAGGAAAAAAAGTAATTCTTATTTAATTCCAAATGAAGTC
8269074 CAA
1 CAA
8269077 TGTCAAATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 12 0.24
48 37 0.76
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (48 bp):
CAAATTGGAAGGAAAAAAAGTAATTCTTATTTAATTCCAAATGAAGTC
Found at i:8277841 original size:23 final size:23
Alignment explanation
Indices: 8277811--8277855 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8277801 TCTAAATTTG
*
8277811 ATAATTTAGTACAAAATTGTTTA
1 ATAATTTAGTACAAAAATGTTTA
* *
8277834 ATAATTTATTATAAAAATGTTT
1 ATAATTTAGTACAAAAATGTTT
8277856 TATTGATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (23 bp):
ATAATTTAGTACAAAAATGTTTA
Found at i:8278009 original size:20 final size:20
Alignment explanation
Indices: 8277948--8278010 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
8277938 AGAATTTTAT
* *
8277948 GTATTCCCTCATAATTTTTG
1 GTATTCTCTCATTATTTTTG
* * *
8277968 GCACTCTCTCATGT-TTATTG
1 GTATTCTCTCAT-TATTTTTG
8277988 GTATTCTCTCATTATTTTTG
1 GTATTCTCTCATTATTTTTG
8278008 GTA
1 GTA
8278011 CACACCTCAT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.17, C:0.19, G:0.13, T:0.51
Consensus pattern (20 bp):
GTATTCTCTCATTATTTTTG
Found at i:8278519 original size:24 final size:20
Alignment explanation
Indices: 8278466--8278536 Score: 63
Period size: 20 Copynumber: 3.3 Consensus size: 20
8278456 ACACTCATAC
8278466 TTTTTGGTACTTTCTTATAAT
1 TTTTTGGTA-TTTCTTATAAT
8278487 TTTTT-GTATTCTCTTATAATGT
1 TTTTTGGTATT-TCTTATAA--T
* *
8278509 ATTTTTGGTATTTCGTCATTAT
1 -TTTTTGGTATTTC-TTATAAT
8278531 TTTTTG
1 TTTTTG
8278537 TACTCTCGTG
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
19 2 0.05
20 11 0.26
21 11 0.26
22 2 0.05
23 7 0.17
24 9 0.21
ACGTcount: A:0.17, C:0.08, G:0.11, T:0.63
Consensus pattern (20 bp):
TTTTTGGTATTTCTTATAAT
Found at i:8283875 original size:17 final size:17
Alignment explanation
Indices: 8283853--8283886 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8283843 TTCTGCTTAC
8283853 AATTAAACCTAAACTAT
1 AATTAAACCTAAACTAT
8283870 AATTAAACCTAAACTAT
1 AATTAAACCTAAACTAT
8283887 GTCACTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (17 bp):
AATTAAACCTAAACTAT
Found at i:8293995 original size:17 final size:17
Alignment explanation
Indices: 8293947--8294013 Score: 62
Period size: 17 Copynumber: 3.9 Consensus size: 17
8293937 TAAATTTTAG
**
8293947 AAAAATTATTAAATTTT
1 AAAAATTATTAAAAATT
* *
8293964 AATAAAATATAAAAAATT
1 AA-AAATTATTAAAAATT
8293982 AAAAATTATTAAAAATT
1 AAAAATTATTAAAAATT
* * *
8293999 AGAATTTTTTAAAAA
1 AAAAATTATTAAAAA
8294014 AATTGTAAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
17 27 0.68
18 13 0.32
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (17 bp):
AAAAATTATTAAAAATT
Found at i:8294269 original size:12 final size:13
Alignment explanation
Indices: 8294250--8294283 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
8294240 CAACCCATAT
8294250 TAATTTTTT-ATA
1 TAATTTTTTAATA
*
8294262 TGATTTTTTAATA
1 TAATTTTTTAATA
8294275 TAATTTTTT
1 TAATTTTTT
8294284 TAAATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (13 bp):
TAATTTTTTAATA
Found at i:8294340 original size:25 final size:24
Alignment explanation
Indices: 8294311--8294366 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
8294301 CATAAAAAAA
8294311 CTAAAAACATT-AAAATAAATGTTTT
1 CTAAAAA-ATTAAAAATAAAT-TTTT
8294336 CTAAAAAATTAAAAATAAA-TTTT
1 CTAAAAAATTAAAAATAAATTTTT
8294359 -TAAAAAAT
1 CTAAAAAAT
8294367 ATGTATATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.27
23 4 0.13
24 3 0.10
25 15 0.50
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (24 bp):
CTAAAAAATTAAAAATAAATTTTT
Found at i:8294904 original size:9 final size:8
Alignment explanation
Indices: 8294890--8294956 Score: 53
Period size: 9 Copynumber: 7.6 Consensus size: 8
8294880 CTTTATAAAA
8294890 TTTTATACT
1 TTTTATA-T
8294899 TTTTATAT
1 TTTTATAT
*
8294907 TTCTATAT
1 TTTTATAT
8294915 ATTTTATAATT
1 -TTTTAT-A-T
*
8294926 TTTTACAAT
1 TTTTA-TAT
8294935 TTTTATATT
1 TTTTATA-T
*
8294944 TTTTTTAT
1 TTTTATAT
8294952 TTTTA
1 TTTTA
8294957 ATAACTTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
8 14 0.30
9 25 0.53
10 7 0.15
11 1 0.02
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.70
Consensus pattern (8 bp):
TTTTATAT
Found at i:8295030 original size:36 final size:36
Alignment explanation
Indices: 8294940--8295033 Score: 95
Period size: 36 Copynumber: 2.6 Consensus size: 36
8294930 ACAATTTTTA
*
8294940 TATTTTTTTT-ATTTTTAATAACTTTTTAATAATTT
1 TATTTTTTTTAATTTTTAATAACTATTTAATAATTT
* ** *
8294975 AATTTTTTATTAAAATTTAATAA-TATTT-ATAGCTTT
1 TATTTTTT-TTAATTTTTAATAACTATTTAATA-ATTT
8295011 TATTTTTTTCTAATTTTTAATAA
1 TATTTTTTT-TAATTTTTAATAA
8295034 AAGCAGGGCT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
35 11 0.23
36 27 0.57
37 9 0.19
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (36 bp):
TATTTTTTTTAATTTTTAATAACTATTTAATAATTT
Found at i:8295154 original size:90 final size:91
Alignment explanation
Indices: 8295048--8295212 Score: 244
Period size: 90 Copynumber: 1.8 Consensus size: 91
8295038 AGGGCTTAAA
* * * * *
8295048 TTTTTTTTTGAAAAGGTTTGAGGGTCTTTTTGATGCATTTTGAAAGATCAAGT-GCCTAATTGAG
1 TTTTTTTTTGAAAAGGTTTAAGAGCCTTTTTGACGCATTTTGAAAGATCAAGTAGCC-AAATGAG
8295112 TGCAAAAAAAAGGGGAGGCTTAATTTC
65 TGCAAAAAAAAGGGGAGGCTTAATTTC
* *
8295139 TTTTTTTTT-AAAAGGTTTAAGAGCCTTTTTGACGCATTTTGAAAGTTCAAGTATCCAAATGAGT
1 TTTTTTTTTGAAAAGGTTTAAGAGCCTTTTTGACGCATTTTGAAAGATCAAGTAGCCAAATGAGT
8295203 GCAAAAAAAA
66 GCAAAAAAAA
8295213 AAAGTTGGGG
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
90 55 0.83
91 11 0.17
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.37
Consensus pattern (91 bp):
TTTTTTTTTGAAAAGGTTTAAGAGCCTTTTTGACGCATTTTGAAAGATCAAGTAGCCAAATGAGT
GCAAAAAAAAGGGGAGGCTTAATTTC
Found at i:8295236 original size:90 final size:89
Alignment explanation
Indices: 8295050--8295248 Score: 231
Period size: 90 Copynumber: 2.2 Consensus size: 89
8295040 GGCTTAAATT
* * * * *
8295050 TTTTTTTGAAAAGGTTTGAGGGTCTTTTTGATGCATTTTGAAAGATCAAGTGCCTAATTGAGTGC
1 TTTTTTTGAAAAGGTTTAAGAGCCTTTTTGACGCATTTTGAAAGATCAAGTGCCTAAATGAGTGC
*
8295115 AAAAAAAAGGGGAGGCTTAATTTC
66 AAAAAAAAGGGGAGGCTTAATTGC
* * *
8295139 TTTTTTTTTAAAAGGTTTAAGAGCCTTTTTGACGCATTTTGAAAGTTCAAGTATCC-AAATGAGT
1 -TTTTTTTGAAAAGGTTTAAGAGCCTTTTTGACGCATTTTGAAAGATCAAGT-GCCTAAATGAGT
*
8295203 GCAAAAAAAAAAAGTTGG-GGCTTAATTGC
64 GC---AAAAAAAAG-GGGAGGCTTAATTGC
*
8295232 TTTTTTTGAAAATGTTT
1 TTTTTTTGAAAAGGTTT
8295249 GAGTGCTTTT
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
90 54 0.59
91 2 0.02
92 15 0.16
93 19 0.21
94 2 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (89 bp):
TTTTTTTGAAAAGGTTTAAGAGCCTTTTTGACGCATTTTGAAAGATCAAGTGCCTAAATGAGTGC
AAAAAAAAGGGGAGGCTTAATTGC
Found at i:8296206 original size:40 final size:40
Alignment explanation
Indices: 8296111--8296208 Score: 142
Period size: 40 Copynumber: 2.5 Consensus size: 40
8296101 CTTTTCAGGT
* * * *
8296111 CAAATCCTATCCACCTTAAGTTACTATAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAATTACCATAGTGAATCAAGAA
* *
8296151 TAAATCCTATTCACTTTAAATTACCATAGTGAATCAAGAA
1 CAAATCCTATCCACTTTAAATTACCATAGTGAATCAAGAA
8296191 CAAATCCTATCCACTTTA
1 CAAATCCTATCCACTTTA
8296209 TATTCTCGAG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (40 bp):
CAAATCCTATCCACTTTAAATTACCATAGTGAATCAAGAA
Found at i:8304008 original size:46 final size:46
Alignment explanation
Indices: 8303958--8304133 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
8303948 TGGTTGAGCA
8303958 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
8304004 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
8304049 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
8304097 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8304134 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8304114 original size:93 final size:93
Alignment explanation
Indices: 8303955--8304126 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
8303945 GGATGGTTGA
* *
8303955 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8304020 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
8304048 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8304113 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
8304127 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:8311583 original size:46 final size:46
Alignment explanation
Indices: 8311533--8311661 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
8311523 TGGTTGAGCA
*
8311533 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
8311579 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
8311625 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8311662 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:8315069 original size:79 final size:79
Alignment explanation
Indices: 8314936--8315156 Score: 327
Period size: 79 Copynumber: 2.8 Consensus size: 79
8314926 AAGTCACATC
* * * *
8314936 TCATGTAACAGTAGTAAATCAGGATTA-CCTTTTCAGGTCAAATCCTACCCACCTTAAGTTATCA
1 TCATGTAACCGTAGCAAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCA
*
8315000 TAAGGAATCATGTA
66 TAAGGAATCATATA
* * * *
8315014 TCGTGTAACCGTAGCGAATTAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAGGTTACCA
1 TCATGTAACCGTAGCAAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCA
*
8315079 TAATGAATCATATA
66 TAAGGAATCATATA
* *
8315093 TCATGTAACCGTAGCAAATCAAGATTACCCTTTTCAGGTCAAATCCTATCCGCCTTAAGTTACC
1 TCATGTAACCGTAGCAAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACC
8315157 GTAGTGAAAC
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
78 22 0.17
79 104 0.83
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (79 bp):
TCATGTAACCGTAGCAAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCA
TAAGGAATCATATA
Found at i:8315315 original size:40 final size:40
Alignment explanation
Indices: 8315251--8315388 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 40
8315241 CTTTTCAGGT
* * * *
8315251 CAAATCCTATTCGCCTTAAGTTACCGTAGTGAATCAAGAA
1 CAAATCCTATTCACTTTAAATTACCATAGTGAATCAAGAA
*
8315291 TAAATCCTATTCACTTTAAATTACCATAGTGAATCAAGAA
1 CAAATCCTATTCACTTTAAATTACCATAGTGAATCAAGAA
* * ** ** *
8315331 CAAATCCTATCCACTTTGAGGTATTATAGTGAATCAGGAA
1 CAAATCCTATTCACTTTAAATTACCATAGTGAATCAAGAA
* *
8315371 CGAATCCTATCCACTTTA
1 CAAATCCTATTCACTTTA
8315389 TATTCTCGAG
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.30
Consensus pattern (40 bp):
CAAATCCTATTCACTTTAAATTACCATAGTGAATCAAGAA
Found at i:8315326 original size:119 final size:119
Alignment explanation
Indices: 8315054--8315326 Score: 438
Period size: 119 Copynumber: 2.3 Consensus size: 119
8315044 TTTTCAGGTC
* * ** *
8315054 AAATCCTATCCACCTTAGGTTACCATAATGAATCATATATCATGTAACCGTAGCAAATCAAGATT
1 AAATCCTATTCACTTTAAATTACCATAATGAATCATATATCATGTAACCATAGCAAATCAAGATT
8315119 ACCCTTTTCAGGTCAAATCCTATCCGCCTTAAGTTACCGTAGTGAAACAAGAAT
66 ACCCTTTTCAGGTCAAATCCTATCCGCCTTAAGTTACCGTAGTGAAACAAGAAT
* * * *
8315173 AAATCCTATTCACTTTAAATTACCATAATAAATCATATATCATGTAACCATCGCGAATCAGGATT
1 AAATCCTATTCACTTTAAATTACCATAATGAATCATATATCATGTAACCATAGCAAATCAAGATT
* *
8315238 ACCCTTTTCAGGTCAAATCCTATTCGCCTTAAGTTACCGTAGTGAATCAAGAAT
66 ACCCTTTTCAGGTCAAATCCTATCCGCCTTAAGTTACCGTAGTGAAACAAGAAT
*
8315292 AAATCCTATTCACTTTAAATTACCATAGTGAATCA
1 AAATCCTATTCACTTTAAATTACCATAATGAATCA
8315327 AGAACAAATC
Statistics
Matches: 141, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
119 141 1.00
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (119 bp):
AAATCCTATTCACTTTAAATTACCATAATGAATCATATATCATGTAACCATAGCAAATCAAGATT
ACCCTTTTCAGGTCAAATCCTATCCGCCTTAAGTTACCGTAGTGAAACAAGAAT
Found at i:8317039 original size:11 final size:10
Alignment explanation
Indices: 8317023--8317056 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
8317013 TTATATATTA
8317023 AATAAATTAAT
1 AATAAA-TAAT
8317034 AATAAAATAAT
1 AAT-AAATAAT
8317045 AATAAATAAT
1 AATAAATAAT
8317055 AA
1 AA
8317057 AATATCTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.41
11 10 0.45
12 3 0.14
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
AATAAATAAT
Done.