Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 281 of 311
Found at i:91951776 original size:31 final size:32
Alignment explanation
Indices: 91951741--91951819 Score: 97
Period size: 31 Copynumber: 2.4 Consensus size: 32
91951731 TAATGGTAGT
*
91951741 AAATATATATAAAATAATAATAA-CAGTAATA
1 AAATATATATAAAATAATAATAATAAGTAATA
* * *
91951772 AAATAAATGTAATATAATAATAATAAGTAATA
1 AAATATATATAAAATAATAATAATAAGTAATA
91951804 AAATATAATATTAAAA
1 AAATAT-ATA-TAAAA
91951820 ATATTAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
31 20 0.53
32 12 0.32
33 2 0.05
34 4 0.11
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (32 bp):
AAATATATATAAAATAATAATAATAAGTAATA
Found at i:91953752 original size:52 final size:51
Alignment explanation
Indices: 91953562--91953755 Score: 148
Period size: 52 Copynumber: 3.8 Consensus size: 51
91953552 CACACCGAAA
* * * * *
91953562 CCATAGCCCTGCCATGGTCTTACACGG-ACCACATAT--CAT-AC-CGATG
1 CCATAGCCCGGCTATGGTCTTATACGGAATCACGTATCACATCACACGATG
* * * *
91953608 CCATATCCCGGATATGGTCTTATACAGAATCACATAATCACATCACACTGATG
1 CCATAGCCCGGCTATGGTCTTATACGGAATCACGT-ATCACATCACAC-GATG
* * * * ***
91953661 CCATAGCCCAGCTATAGTCTTATACGGGGAT-ACGAATCACATGGTATCGATG
1 CCATAGCCCGGCTATGGTCTTATAC-GGAATCACGTATCACATCACA-CGATG
* *
91953713 CCATAGCCCGGCTATGGTCTTATATGGAATCATGTATCACATC
1 CCATAGCCCGGCTATGGTCTTATACGGAATCACGTATCACATC
91953756 TTTTCCGTCA
Statistics
Matches: 113, Mismatches: 25, Indels: 14
0.74 0.16 0.09
Matches are distributed among these distances:
46 21 0.19
47 6 0.05
48 2 0.02
50 3 0.03
51 6 0.05
52 44 0.39
53 28 0.25
54 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (51 bp):
CCATAGCCCGGCTATGGTCTTATACGGAATCACGTATCACATCACACGATG
Found at i:91960791 original size:19 final size:19
Alignment explanation
Indices: 91960767--91960812 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
91960757 AACACACACA
91960767 AGTAAGCTTATTGAAGCTT
1 AGTAAGCTTATTGAAGCTT
91960786 AGTAAGCTTATTGAAGCTT
1 AGTAAGCTTATTGAAGCTT
91960805 AGTAAGCT
1 AGTAAGCT
91960813 CTTAGGCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.35
Consensus pattern (19 bp):
AGTAAGCTTATTGAAGCTT
Found at i:91960794 original size:9 final size:9
Alignment explanation
Indices: 91960767--91960812 Score: 56
Period size: 10 Copynumber: 4.9 Consensus size: 9
91960757 AACACACACA
91960767 AGTAAGCTT
1 AGTAAGCTT
*
91960776 ATTGAAGCTT
1 AGT-AAGCTT
91960786 AGTAAGCTT
1 AGTAAGCTT
*
91960795 ATTGAAGCTT
1 AGT-AAGCTT
91960805 AGTAAGCT
1 AGTAAGCT
91960813 CTTAGGCATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 15 0.48
10 16 0.52
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.35
Consensus pattern (9 bp):
AGTAAGCTT
Found at i:91963888 original size:21 final size:21
Alignment explanation
Indices: 91963862--91963902 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
91963852 AGACGAGCGA
* *
91963862 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
91963883 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
91963903 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:91966578 original size:52 final size:52
Alignment explanation
Indices: 91966422--91966581 Score: 196
Period size: 52 Copynumber: 3.1 Consensus size: 52
91966412 CGGACCACAT
* * *
91966422 ATCATACCGATGCCATATCCCGGATATGGTCTTATACGGAATCACATAATCAC
1 ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCACGT-ATCAC
* * * *
91966475 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGCGAT-ACGAATCAC
1 ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGG-AATCACGTATCAC
** * *
91966527 ATGGTACCGATGCCATAGCCCGGCTATAGTCTTATACGGAATCATGTATCAC
1 ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCACGTATCAC
91966579 ATC
1 ATC
91966582 TTTTCCGTCA
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
51 2 0.02
52 48 0.54
53 37 0.42
54 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (52 bp):
ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCACGTATCAC
Found at i:91968874 original size:13 final size:13
Alignment explanation
Indices: 91968856--91968894 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
91968846 CCAAATTGTA
*
91968856 ATTTTAGTAAAGT
1 ATTTTAGTAAAAT
91968869 ATTTTAGTAAAAT
1 ATTTTAGTAAAAT
*
91968882 ATTTTTGTAAAAT
1 ATTTTAGTAAAAT
91968895 CGAGAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (13 bp):
ATTTTAGTAAAAT
Found at i:91969896 original size:25 final size:25
Alignment explanation
Indices: 91969862--91969937 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
91969852 ATTTTTTTAT
91969862 ATTTTATATTTTAAAAAATTTAAATA
1 ATTTT-TATTTTAAAAAATTTAAATA
** * *
91969888 ATTTTTATTTTTCATAATTTATATA
1 ATTTTTATTTTAAAAAATTTAAATA
*
91969913 ATTTTTATTTTTAAAAACTTTAAAT
1 ATTTTTA-TTTTAAAAAATTTAAAT
91969938 TTTATTTAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 23 0.57
26 17 0.43
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (25 bp):
ATTTTTATTTTAAAAAATTTAAATA
Found at i:91971537 original size:17 final size:18
Alignment explanation
Indices: 91971515--91971548 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
91971505 AAATGAACCC
*
91971515 AAATTAGCCC-AACTACT
1 AAATTAACCCAAACTACT
91971532 AAATTAACCCAAACTAC
1 AAATTAACCCAAACTAC
91971549 CTACTCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.47, C:0.29, G:0.03, T:0.21
Consensus pattern (18 bp):
AAATTAACCCAAACTACT
Found at i:91972940 original size:13 final size:14
Alignment explanation
Indices: 91972895--91972943 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
91972885 ACTTATTACT
91972895 TTATTAT-TAATTAA
1 TTATTATCT-ATTAA
*
91972909 TTTAGTAT-TATTAA
1 -TTATTATCTATTAA
91972923 TTATTATCTATT-A
1 TTATTATCTATTAA
91972936 TTATTATC
1 TTATTATC
91972944 CTTATTAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 15 0.48
14 9 0.29
15 7 0.23
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (14 bp):
TTATTATCTATTAA
Found at i:91973039 original size:3 final size:3
Alignment explanation
Indices: 91973033--91973107 Score: 73
Period size: 3 Copynumber: 25.7 Consensus size: 3
91973023 TTGTTGTGTC
* * * *
91973033 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATC ACT A-T ATT GTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
91973080 ATT ATT ACT ATC A-T ATT ATC ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
91973108 ACTATTTTTA
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
2 3 0.05
3 54 0.95
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:91973302 original size:15 final size:14
Alignment explanation
Indices: 91973250--91973311 Score: 54
Period size: 15 Copynumber: 4.2 Consensus size: 14
91973240 TATTCGTTAG
*
91973250 TATCATTATTAATTT
1 TATCATTATT-TTTT
*
91973265 TATCTTTATTTTCTT
1 TATCATTATTTT-TT
91973280 TA-CAATTATTTTTAT
1 TATC-ATTATTTTT-T
*
91973295 TATCATTATTTATT
1 TATCATTATTTTTT
91973309 TAT
1 TAT
91973312 TTATTTATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
14 7 0.18
15 31 0.79
16 1 0.03
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (14 bp):
TATCATTATTTTTT
Found at i:91974433 original size:37 final size:37
Alignment explanation
Indices: 91974363--91974433 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
91974353 CATTAGTAGA
* *
91974363 ATTTAACCATTTTTTATATATTTAAATTGAAACTAAT
1 ATTTAACCATCTTTTATATATTTAAATTCAAACTAAT
**
91974400 ATTTAACCATCTTTTATATATTTGGATTCAAACT
1 ATTTAACCATCTTTTATATATTTAAATTCAAACT
91974434 TCAAAAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.48
Consensus pattern (37 bp):
ATTTAACCATCTTTTATATATTTAAATTCAAACTAAT
Found at i:91974470 original size:25 final size:24
Alignment explanation
Indices: 91974436--91974500 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 24
91974426 TTCAAACTTC
*
91974436 AAAAATTAAAATTAAATTAGAATAT
1 AAAAAATAAAATTAAATTA-AATAT
* * *
91974461 AAAAAATAAATTTGTAACTTACATAT
1 AAAAAATAAA-AT-TAAATTAAATAT
91974487 AAAAAA-AAAATTAA
1 AAAAAATAAAATTAA
91974501 TAGATTGGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
23 3 0.09
24 1 0.03
25 12 0.36
26 11 0.33
27 6 0.18
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (24 bp):
AAAAAATAAAATTAAATTAAATAT
Found at i:91976058 original size:17 final size:17
Alignment explanation
Indices: 91976056--91976090 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
91976046 AAATTTATAA
*
91976056 TTTATAATTTTTAATAAT
1 TTTAT-ATTTTTAAAAAT
91976074 TTTATATTTTTAAAAAT
1 TTTATATTTTTAAAAAT
91976091 AGTTTTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTATATTTTTAAAAAT
Found at i:91978573 original size:100 final size:101
Alignment explanation
Indices: 91978400--91978588 Score: 317
Period size: 100 Copynumber: 1.9 Consensus size: 101
91978390 ACATTGGAGA
* * * *
91978400 ATCGATGAATTTCGACTACCCATTCAATTCTACACTCTACATAATTCTAAGGTACCATTATTTTT
1 ATCGATGAATTTCGACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTAT
* *
91978465 ATTTAAGA-TAATTAAGTATATATATTTATGTATTT
66 ATATAAGATTAATTAAATATATATATTTATGTATTT
91978500 ATCGATGAATTTCGACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTAT
1 ATCGATGAATTTCGACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTAT
91978565 ATATAAGATTAATTAAATATATAT
66 ATATAAGATTAATTAAATATATAT
91978589 TCATGCATTT
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
100 68 0.83
101 14 0.17
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.40
Consensus pattern (101 bp):
ATCGATGAATTTCGACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTAT
ATATAAGATTAATTAAATATATATATTTATGTATTT
Found at i:91978758 original size:14 final size:15
Alignment explanation
Indices: 91978734--91978763 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
91978724 ATATGAAAAT
91978734 TAAATTATATTTTTA
1 TAAATTATATTTTTA
91978749 TAAA-TATATTTTTA
1 TAAATTATATTTTTA
91978763 T
1 T
91978764 TTTTATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TAAATTATATTTTTA
Found at i:91981459 original size:22 final size:22
Alignment explanation
Indices: 91981409--91981459 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
91981399 CTTTATGCAT
91981409 TATTCATTTTAAATTATTTTATTA
1 TATT-ATTTTAAA-TATTTTATTA
91981433 T-TTATTTTAAA-ATTTTATATA
1 TATTATTTTAAATATTTTAT-TA
91981454 TATTAT
1 TATTAT
91981460 CAATTTCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 7 0.28
21 3 0.12
22 12 0.48
23 2 0.08
24 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
TATTATTTTAAATATTTTATTA
Found at i:91981584 original size:26 final size:25
Alignment explanation
Indices: 91981546--91981649 Score: 73
Period size: 26 Copynumber: 4.0 Consensus size: 25
91981536 CAAGTTTCTT
* *
91981546 TTTACATAATATTTATTTTAAACTC
1 TTTATATATTATTTATTTTAAACTC
* ** *
91981571 ATTTATATATTATTTATCTTAATTTTT
1 -TTTATATATTATTTATTTTAA-ACTC
* *
91981598 TTTATATATTGTTCATTTTAAACTC
1 TTTATATATTATTTATTTTAAACTC
* *
91981623 TTTCCCGTATATTATTTATTTCAAACT
1 TTT---ATATATTATTTATTTTAAACT
91981650 TTCGCCTATA
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
25 4 0.07
26 36 0.62
27 1 0.02
28 17 0.29
ACGTcount: A:0.30, C:0.12, G:0.02, T:0.57
Consensus pattern (25 bp):
TTTATATATTATTTATTTTAAACTC
Found at i:91981601 original size:52 final size:54
Alignment explanation
Indices: 91981522--91981622 Score: 127
Period size: 52 Copynumber: 1.9 Consensus size: 54
91981512 AGATGTCTTG
*
91981522 TATATTACTTATTTCAAGTTTCTTTTTACATAATATTTATTTTAAACTCATTTA
1 TATATTACTTATTTCAAGTTTCTTTTTACATAATATTCATTTTAAACTCATTTA
* * * *
91981576 TATATTATTTATCTT-AA-TTT-TTTTTATATATTGTTCATTTTAAACTC
1 TATATTACTTAT-TTCAAGTTTCTTTTTACATAATATTCATTTTAAACTC
91981623 TTTCCCGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
52 23 0.56
53 3 0.07
54 13 0.32
55 2 0.05
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.58
Consensus pattern (54 bp):
TATATTACTTATTTCAAGTTTCTTTTTACATAATATTCATTTTAAACTCATTTA
Found at i:91981668 original size:26 final size:26
Alignment explanation
Indices: 91981622--91981678 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
91981612 ATTTTAAACT
**
91981622 CTTTCCCGTATATTATTTATTTCAAA
1 CTTTCCCGTATATTACCTATTTCAAA
*
91981648 CTTTCGCC-TATATTACCTATTTTAAA
1 CTTTC-CCGTATATTACCTATTTCAAA
*
91981674 ATTTC
1 CTTTC
91981679 TTATACATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.04, T:0.49
Consensus pattern (26 bp):
CTTTCCCGTATATTACCTATTTCAAA
Found at i:91981714 original size:29 final size:27
Alignment explanation
Indices: 91981664--91981719 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
91981654 CCTATATTAC
91981664 CTATTTTAAAATTTCTTATACATATATT
1 CTATTTTAAAATTTCTTATACAT-TATT
* * *
91981692 CTATTTTTAAATTGTTTTGTACATTATT
1 CTATTTTAAAATT-TCTTATACATTATT
91981720 GATATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.30, C:0.09, G:0.04, T:0.57
Consensus pattern (27 bp):
CTATTTTAAAATTTCTTATACATTATT
Found at i:91982987 original size:35 final size:35
Alignment explanation
Indices: 91982940--91983012 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
91982930 TTAAGTGAGA
*
91982940 GTAAGAAACTATTCCTTCGTGAGGTCTTGACCTCT
1 GTAAGAAACTATTCCTTCGTGAGGTCTTCACCTCT
*
91982975 GTAAGAAGCTATTCCTTCGTGAGGTCTTCACCTCT
1 GTAAGAAACTATTCCTTCGTGAGGTCTTCACCTCT
91983010 GTA
1 GTA
91983013 TAGGATAGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (35 bp):
GTAAGAAACTATTCCTTCGTGAGGTCTTCACCTCT
Found at i:91987119 original size:65 final size:65
Alignment explanation
Indices: 91987013--91987144 Score: 246
Period size: 65 Copynumber: 2.0 Consensus size: 65
91987003 TATAGGGAGC
* *
91987013 TTTACCAAAATCTGTTTGATGCGCATGTGGTGTCCCCATTTTGCCTAAAACCCAAGCAACCTCCA
1 TTTACCAAAATCTGTTTGATGCGCATGTGGTGTCCCAATTTTACCTAAAACCCAAGCAACCTCCA
91987078 TTTACCAAAATCTGTTTGATGCGCATGTGGTGTCCCAATTTTACCTAAAACCCAAGCAACCTCCA
1 TTTACCAAAATCTGTTTGATGCGCATGTGGTGTCCCAATTTTACCTAAAACCCAAGCAACCTCCA
91987143 TT
1 TT
91987145 CCCTAAGTGG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.30
Consensus pattern (65 bp):
TTTACCAAAATCTGTTTGATGCGCATGTGGTGTCCCAATTTTACCTAAAACCCAAGCAACCTCCA
Found at i:91989000 original size:93 final size:93
Alignment explanation
Indices: 91988841--91989020 Score: 351
Period size: 93 Copynumber: 1.9 Consensus size: 93
91988831 ATGTGCCTCC
91988841 AATATCATTATTTCAATAAAAAATGCATTTTTGCGTATCATTTTGAGCAAATATTCTTTTATTCT
1 AATATCATTATTTCAATAAAAAATGCATTTTTGCGTATCATTTTGAGCAAATATTCTTTTATTCT
91988906 TTCTACTTCATTCATAATCATATGTCCA
66 TTCTACTTCATTCATAATCATATGTCCA
*
91988934 AATATCGTTATTTCAATAAAAAATGCATTTTTGCGTATCATTTTGAGCAAATATTCTTTTATTCT
1 AATATCATTATTTCAATAAAAAATGCATTTTTGCGTATCATTTTGAGCAAATATTCTTTTATTCT
91988999 TTCTACTTCATTCATAATCATA
66 TTCTACTTCATTCATAATCATA
91989021 CCATACAAAT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 86 1.00
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.46
Consensus pattern (93 bp):
AATATCATTATTTCAATAAAAAATGCATTTTTGCGTATCATTTTGAGCAAATATTCTTTTATTCT
TTCTACTTCATTCATAATCATATGTCCA
Found at i:91990317 original size:21 final size:21
Alignment explanation
Indices: 91990292--91990360 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
91990282 TATAATGATT
91990292 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
91990313 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
91990333 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
91990353 ATTATTAT
1 ATTATTAT
91990361 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:91990373 original size:15 final size:14
Alignment explanation
Indices: 91990347--91990377 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
91990337 TATGGTTTTA
91990347 TATTAGATTATTAT
1 TATTAGATTATTAT
91990361 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
91990376 TA
1 TA
91990378 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:91990716 original size:14 final size:14
Alignment explanation
Indices: 91990692--91990724 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
91990682 AAGAATTAAG
91990692 GAAACAAAGAAACA
1 GAAACAAAGAAACA
91990706 -AAACAAAAGAAACA
1 GAAAC-AAAGAAACA
91990720 GAAAC
1 GAAAC
91990725 GAAGCAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
GAAACAAAGAAACA
Found at i:91990750 original size:18 final size:18
Alignment explanation
Indices: 91990716--91990758 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
91990706 AAACAAAAGA
*
91990716 AACAGAAACGAAGCAGGG
1 AACAGAAACGAAACAGGG
91990734 AACA-AAACGAAAACAGGG
1 AACAGAAACG-AAACAGGG
91990752 AA-AGAAA
1 AACAGAAA
91990759 ATAAAAAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.60, C:0.14, G:0.26, T:0.00
Consensus pattern (18 bp):
AACAGAAACGAAACAGGG
Found at i:91992458 original size:47 final size:47
Alignment explanation
Indices: 91992306--91992482 Score: 184
Period size: 47 Copynumber: 3.8 Consensus size: 47
91992296 TGTAACCAGC
* * *
91992306 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
*
91992352 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-AGTTCACAT
* * * * *
91992402 -C-TCA-CGAACTGGGACTCAACTTAACGAGTTCGGACATTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
* *
91992446 CCATAAGGGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91992483 TGTTCAACCA
Statistics
Matches: 107, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
43 3 0.03
44 5 0.05
45 1 0.01
46 36 0.34
47 52 0.49
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
Found at i:91992478 original size:94 final size:93
Alignment explanation
Indices: 91992314--91992484 Score: 252
Period size: 94 Copynumber: 1.8 Consensus size: 93
91992304 GCCCATAAGT
* * *
91992314 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGGGAACTCAGACTCAACTCAA
91992379 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
91992407 GAACTGGGACTCAACTTAACGAGTTCGGACATTTCACATCCATAAGGGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGAC-GTTCACATCCATAAGGGAACTCAGACTCAACTCA
*
91992472 ATGAGTTCGGATG
65 ACGAGTTCGGATG
91992485 TTCAACCATC
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
93 26 0.38
94 42 0.62
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGGGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92000588 original size:21 final size:21
Alignment explanation
Indices: 92000563--92000631 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
92000553 TATAATGATT
92000563 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
92000584 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
** *
92000604 A-CGTTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
92000624 ATTATTAT
1 ATTATTAT
92000632 TATTAGCATT
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
18 3 0.09
19 9 0.26
20 3 0.09
21 17 0.49
22 3 0.09
ACGTcount: A:0.35, C:0.01, G:0.09, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:92000644 original size:15 final size:14
Alignment explanation
Indices: 92000618--92000648 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
92000608 TATGGTTTTA
92000618 TATTAGATTATTAT
1 TATTAGATTATTAT
92000632 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
92000647 TA
1 TA
92000649 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:92001055 original size:12 final size:13
Alignment explanation
Indices: 92001013--92001042 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
92001003 GGAACAAAAT
92001013 GAAAACAGGGAAA
1 GAAAACAGGGAAA
92001026 GAAAA-AGGGAAA
1 GAAAACAGGGAAA
92001038 GAAAA
1 GAAAA
92001043 TAAAAAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.67, C:0.03, G:0.30, T:0.00
Consensus pattern (13 bp):
GAAAACAGGGAAA
Found at i:92005782 original size:29 final size:30
Alignment explanation
Indices: 92005735--92005802 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
92005725 TGGCCCAATA
* *
92005735 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
92005765 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
92005795 GAAAATAT
1 GTAAATAT
92005803 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:92008278 original size:46 final size:46
Alignment explanation
Indices: 92008226--92008454 Score: 370
Period size: 46 Copynumber: 5.0 Consensus size: 46
92008216 AGTGTGCTCT
92008226 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
92008272 CTGATATGAAATGTGTAAGATCATGGTTGGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTT-GAAAGATACCATGGCAAC
92008319 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
92008365 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
92008411 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
92008455 TCATGTCAAA
Statistics
Matches: 173, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
45 1 0.01
46 127 0.73
47 45 0.26
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:92008390 original size:93 final size:92
Alignment explanation
Indices: 92008226--92008454 Score: 370
Period size: 93 Copynumber: 2.5 Consensus size: 92
92008216 AGTGTGCTCT
92008226 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
*
92008291 ATCATGGTTGGAAAGATACCATGGCAAC
66 ACCATGGTT-GAAAGATACCATGGCAAC
92008319 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
92008384 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
92008411 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
92008455 TCATGTCAAA
Statistics
Matches: 128, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
91 1 0.01
92 54 0.42
93 73 0.57
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (92 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
ACCATGGTTGAAAGATACCATGGCAAC
Found at i:92010171 original size:44 final size:44
Alignment explanation
Indices: 92010105--92010221 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 44
92010095 AATCACCATG
* *
92010105 GCGAATCTTGTCTCCTTGAAGTTGCAGTGGAGCAGATTCAAGTC
1 GCGAATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTCAAGTC
* ** * * *
92010149 GCGAATCTTATCTCCTTAAAGTTACAGAAGAGTAGATTGAAGTT
1 GCGAATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTCAAGTC
* *
92010193 AC-AGATCTTATCTCCCTAAAGTTGCAGTG
1 GCGA-ATCTTATCTCCTTAAAGTTGCAGTG
92010222 AAATAGATCA
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
43 1 0.02
44 58 0.98
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (44 bp):
GCGAATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTCAAGTC
Found at i:92010229 original size:44 final size:47
Alignment explanation
Indices: 92010152--92010266 Score: 123
Period size: 44 Copynumber: 2.6 Consensus size: 47
92010142 TCAAGTCGCG
* * ** *
92010152 AATCTTATCTCCTTAAAGTTACA--GAAGAGTAGATTGAAGTTA-CA
1 AATCTTATCTCCCTAAAGTTGCAGTGAAGAGTAGATCAAAGATAGCA
*
92010196 GATCTTATCTCCCTAAAGTTGCAGTGAA-A-TAGATCAAAGATAGCA
1 AATCTTATCTCCCTAAAGTTGCAGTGAAGAGTAGATCAAAGATAGCA
* *
92010241 AACCTTATCCCCCTAAAGTTGCAGTG
1 AATCTTATCTCCCTAAAGTTGCAGTG
92010267 GGGCAGGTTA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
44 30 0.51
45 26 0.44
46 3 0.05
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (47 bp):
AATCTTATCTCCCTAAAGTTGCAGTGAAGAGTAGATCAAAGATAGCA
Found at i:92010346 original size:45 final size:45
Alignment explanation
Indices: 92010226--92010356 Score: 140
Period size: 45 Copynumber: 2.9 Consensus size: 45
92010216 GCAGTGAAAT
* * **
92010226 AGATCAAAGATAGCAAACCTTATCCCCCT-AAAGTTGCAGTGGGGC
1 AGATTAAAGATAGCAAATCTTATTTCCCTGAAA-TTGCAGTGGGGC
* * * *
92010271 AGGTTAAAGTTA-CAAGTCTTATTTACCTGAAATTGCAGTGGGGC
1 AGATTAAAGATAGCAAATCTTATTTCCCTGAAATTGCAGTGGGGC
* * *
92010315 AGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTAGTGG
1 AGATTAAAGATAGCAAATCTTATTTCCCTGAAATTGCAGTGG
92010357 AACAAATTAA
Statistics
Matches: 69, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
44 32 0.46
45 37 0.54
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (45 bp):
AGATTAAAGATAGCAAATCTTATTTCCCTGAAATTGCAGTGGGGC
Found at i:92012791 original size:26 final size:26
Alignment explanation
Indices: 92012745--92012801 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
92012735 ATTTTAAACT
**
92012745 CTTTCCCGTATATTATTTATTTCAAA
1 CTTTCCCGTATATTACCTATTTCAAA
*
92012771 CTTTCGCC-TATATTACCTATTTTAAA
1 CTTTC-CCGTATATTACCTATTTCAAA
*
92012797 ATTTC
1 CTTTC
92012802 TTATACATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.04, T:0.49
Consensus pattern (26 bp):
CTTTCCCGTATATTACCTATTTCAAA
Found at i:92012837 original size:29 final size:27
Alignment explanation
Indices: 92012787--92012842 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
92012777 CCTATATTAC
92012787 CTATTTTAAAATTTCTTATACATATATT
1 CTATTTTAAAATTTCTTATACAT-TATT
* * *
92012815 CTATTTTTAAATTGTTTTGTACATTATT
1 CTATTTTAAAATT-TCTTATACATTATT
92012843 GATATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.30, C:0.09, G:0.04, T:0.57
Consensus pattern (27 bp):
CTATTTTAAAATTTCTTATACATTATT
Found at i:92014655 original size:18 final size:18
Alignment explanation
Indices: 92014628--92014662 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92014618 TCTATTGTAT
92014628 TATATAAATAGTATATAA
1 TATATAAATAGTATATAA
* *
92014646 TATATTAATAGTTTATA
1 TATATAAATAGTATATA
92014663 TGTATACAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (18 bp):
TATATAAATAGTATATAA
Found at i:92015076 original size:6 final size:6
Alignment explanation
Indices: 92015067--92015091 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
92015057 TTTAGATTTT
92015067 ATATTA ATATTA ATATTA ATATTA A
1 ATATTA ATATTA ATATTA ATATTA A
92015092 ATAAATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATATTA
Found at i:92019849 original size:3 final size:3
Alignment explanation
Indices: 92019837--92020062 Score: 146
Period size: 3 Copynumber: 75.0 Consensus size: 3
92019827 TTATTTTTGC
* * *
92019837 TAT T-T TAT TAT TAA AAT TAAT TAT TAT TAT TAT T-T TAT TAT CAT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
92019881 T-T GTAT TCAT TAT TAT TAT TTT TAT TAC TGT TAT TAT TAT ATAT TAT
1 TAT -TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* *
92019928 TACT TAT TAT TAT TA- TATT TAT T-T TAT TAT TGT TAC TAT TAT T-T
1 TA-T TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
92019972 TA- TAT ATATT TAT TAA CAT TATT TATT TAT TAT TAT TGT TAG TAA CA-
1 TAT TAT -TA-T TAT TAT TAT TA-T TA-T TAT TAT TAT TAT TAT TAT TAT
* * *
92020019 TAT TGT TAT TTT TAT TAT T-T TAT TAT TAT TAT TCT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92020063 CATGGTACTA
Statistics
Matches: 173, Mismatches: 32, Indels: 36
0.72 0.13 0.15
Matches are distributed among these distances:
2 16 0.09
3 130 0.75
4 26 0.15
5 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:92023835 original size:23 final size:25
Alignment explanation
Indices: 92023809--92023855 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
92023799 TATCATTCAT
*
92023809 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
92023832 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
92023856 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:92024293 original size:46 final size:46
Alignment explanation
Indices: 92024126--92024297 Score: 220
Period size: 46 Copynumber: 3.7 Consensus size: 46
92024116 TGTCATAGTG
* * * *
92024126 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
* ** * * *
92024172 TCTTTCAACCATGGTTTTATTCTTTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
92024218 TCTTTCAACCATGGTCTTTCACATCTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
92024264 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
92024298 AGAGCACACT
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
45 4 0.04
46 106 0.96
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:92041831 original size:46 final size:47
Alignment explanation
Indices: 92041778--92041875 Score: 189
Period size: 46 Copynumber: 2.1 Consensus size: 47
92041768 TTTAATACAT
92041778 TTCATGTTCATATGCAACATTCTCTATAATTCAACTATTATTT-TAG
1 TTCATGTTCATATGCAACATTCTCTATAATTCAACTATTATTTATAG
92041824 TTCATGTTCATATGCAACATTCTCTATAATTCAACTATTATTTATAG
1 TTCATGTTCATATGCAACATTCTCTATAATTCAACTATTATTTATAG
92041871 TTCAT
1 TTCAT
92041876 TCAAAGCTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 43 0.84
47 8 0.16
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (47 bp):
TTCATGTTCATATGCAACATTCTCTATAATTCAACTATTATTTATAG
Found at i:92047680 original size:40 final size:40
Alignment explanation
Indices: 92047595--92047717 Score: 147
Period size: 40 Copynumber: 3.1 Consensus size: 40
92047585 CTCGAGAATA
* ** *
92047595 TAAAGTGGATAGGATTCGTTCCTGATTCACTATAATACCT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* * *
92047635 CAAAGTGGATAGGATTTGTTACTGATTCACTATGGTAATT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* * * *
92047675 TAAAGTGAATAGGATTTATTCCTGATTGACTACGGTAACT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
92047715 TAA
1 TAA
92047718 GGCAAATAGG
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.36
Consensus pattern (40 bp):
TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
Found at i:92047726 original size:40 final size:40
Alignment explanation
Indices: 92047643--92047731 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
92047633 CTCAAAGTGG
* * * **
92047643 ATAGGATTTGTTACTGATTCACTATGGTAATTTAAAGTGA
1 ATAGGATTTATTACTGATTCACTACGGTAACTTAAAGCAA
* * *
92047683 ATAGGATTTATTCCTGATTGACTACGGTAACTTAAGGCAA
1 ATAGGATTTATTACTGATTCACTACGGTAACTTAAAGCAA
92047723 ATAGGATTT
1 ATAGGATTT
92047732 GACCTGAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (40 bp):
ATAGGATTTATTACTGATTCACTACGGTAACTTAAAGCAA
Found at i:92048443 original size:13 final size:13
Alignment explanation
Indices: 92048425--92048452 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
92048415 TCTTGGAGGA
92048425 GCACAATGTAGTT
1 GCACAATGTAGTT
92048438 GCACAATGTAGTT
1 GCACAATGTAGTT
92048451 GC
1 GC
92048453 TGCATAAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (13 bp):
GCACAATGTAGTT
Found at i:92050581 original size:12 final size:12
Alignment explanation
Indices: 92050564--92050588 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92050554 GTTGAAATCT
92050564 ACCTCAGCCTCG
1 ACCTCAGCCTCG
92050576 ACCTCAGCCTCG
1 ACCTCAGCCTCG
92050588 A
1 A
92050589 GCTCCTCGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.48, G:0.16, T:0.16
Consensus pattern (12 bp):
ACCTCAGCCTCG
Found at i:92053079 original size:25 final size:24
Alignment explanation
Indices: 92053035--92053103 Score: 88
Period size: 25 Copynumber: 2.9 Consensus size: 24
92053025 ATTTAATTTT
* * *
92053035 TTAA-AAATTA-TAAAAATATAAT
1 TTAATAAATTAGTGAAATTATAAC
92053057 TTAATAAATTAGTGAAATCTATAAC
1 TTAATAAATTAGTGAAAT-TATAAC
92053082 TTAATAAATTAGTGAAATTATA
1 TTAATAAATTAGTGAAATTATA
92053104 TATTAATTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
22 4 0.10
23 6 0.15
24 8 0.20
25 23 0.56
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.38
Consensus pattern (24 bp):
TTAATAAATTAGTGAAATTATAAC
Found at i:92053110 original size:24 final size:25
Alignment explanation
Indices: 92053051--92053103 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
92053041 ATTATAAAAA
*
92053051 TATAATTTAATAAATTAGTGAAATC
1 TATAACTTAATAAATTAGTGAAATC
92053076 TATAACTTAATAAATTAGTGAAAT-
1 TATAACTTAATAAATTAGTGAAATC
92053100 TATA
1 TATA
92053104 TATTAATTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.40
Consensus pattern (25 bp):
TATAACTTAATAAATTAGTGAAATC
Found at i:92056123 original size:17 final size:16
Alignment explanation
Indices: 92056087--92056140 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
92056077 GATTATTTAG
92056087 AATAATTGTTGCTCAA
1 AATAATTGTTGCTCAA
*
92056103 AATAATTGTTGTCTGAA
1 AATAATTGTTG-CTCAA
* *
92056120 AATAACTG-TGTTCAA
1 AATAATTGTTGCTCAA
92056135 AATAAT
1 AATAAT
92056141 CATATTCAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
15 8 0.25
16 13 0.41
17 11 0.34
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (16 bp):
AATAATTGTTGCTCAA
Found at i:92057223 original size:23 final size:23
Alignment explanation
Indices: 92057178--92057224 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
92057168 ATTATATTAA
*
92057178 AATTAAAATATAAATATAAATAT
1 AATTAAAATATAAAAATAAATAT
*
92057201 AATTAAAA-ATAAAAAATATATAT
1 AATTAAAATAT-AAAAATAAATAT
92057224 A
1 A
92057225 TTTATTAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (23 bp):
AATTAAAATATAAAAATAAATAT
Found at i:92057249 original size:5 final size:5
Alignment explanation
Indices: 92057239--92057269 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
92057229 TTAGATAATT
92057239 CGGGC CGGGC CGGGC CGGGC CGGGC CGGGC C
1 CGGGC CGGGC CGGGC CGGGC CGGGC CGGGC C
92057270 AAAAAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.00, C:0.42, G:0.58, T:0.00
Consensus pattern (5 bp):
CGGGC
Found at i:92060817 original size:127 final size:125
Alignment explanation
Indices: 92060685--92061158 Score: 519
Period size: 127 Copynumber: 3.7 Consensus size: 125
92060675 CTCTAGCATA
92060685 AGGCAATATTTCGTGTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
1 AGGCAATATTTCGTGTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
* * * *
92060750 TTCGGCTAAAATACGGAATAT-C-TTTTGGAAATTTCGTCCATGCTTTTTAAAAAATTAAAAGG
66 TTCGACTAAAATACGGAATATCCTTTTTTGAAATTTCATCCA-GCTTTTT--AAAA-TAAAACG
* * * * * * * ** *
92060812 AGGCAATATTTCGTATTTGGGGAGTTTGAGAGATTGTGTCCAATCGTGCTGGGTTTCGTTTTGTT
1 AGGCAATATTTCGT-GTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTT-TC
* *
92060877 CATTCGACT-AAATATGGAATATCCTTTTTTTTAAA-TTCATCC-GCGTTTTCTTAAAATAAAAC
64 CATTCGACTAAAATACGGAATATCC-TTTTTTGAAATTTCATCCAGC--TTT-TTAAAATAAAAC
92060939 G
125 G
* * * *
92060940 AGGCAATATTTCGTGTTTGAAAGTTTGGGAAGTCGTGCCCAATCGTGTTGGGCTTCAATTTTCCA
1 AGGCAATATTTCGTGTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
* * *
92061005 CTCGACTAAAATATGGAATATCCTTTTTTAAAATTTCATCCACGCTTTCTTAAAATAAAACG
66 TTCGACTAAAATACGGAATATCCTTTTTTGAAATTTCATCCA-GCTTT-TTAAAATAAAACG
* * * ** *
92061067 AGGTAATATTTCATGCTT-GGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTTGATTTTTC
1 AGGCAATATTTCGTG-TTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCC
*
92061131 ATTCGACTAAAATACAGAATATCCTTTT
65 ATTCGACTAAAATACGGAATATCCTTTT
92061159 GAAATTCCAT
Statistics
Matches: 290, Mismatches: 44, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
126 18 0.06
127 164 0.57
128 74 0.26
129 16 0.06
130 9 0.03
131 9 0.03
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (125 bp):
AGGCAATATTTCGTGTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
TTCGACTAAAATACGGAATATCCTTTTTTGAAATTTCATCCAGCTTTTTAAAATAAAACG
Found at i:92060855 original size:128 final size:125
Alignment explanation
Indices: 92060685--92061243 Score: 515
Period size: 127 Copynumber: 4.4 Consensus size: 125
92060675 CTCTAGCATA
* *
92060685 AGGCAATATTTCGTGTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
1 AGGCAATATTTCGTGTTTGGAAGTTTGGGAGATCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
* * * *
92060750 TTCGGCTAAAATACGGAATAT-C-TTTTGGAAATTTCGTCCATGCTTTTTAAAAAATTAAAAGG
66 TTCGACTAAAATACGGAATATCCTTTTTTGAAATTTCATCCA-GCTTTTT--AAAA-TAAAACG
* * * * * * ** *
92060812 AGGCAATATTTCGTATTTGGGGAGTTTGAGAGATTGTGTCCAATCGTGCTGGGTTTCGTTTTGTT
1 AGGCAATATTTCGTGTTT-GGAAGTTTGGGAGATCGTGCCCAATCGTGCTGGGCTTCAATTT-TC
* *
92060877 CATTCGACT-AAATATGGAATATCCTTTTTTTTAAA-TTCATCC-GCGTTTTCTTAAAATAAAAC
64 CATTCGACTAAAATACGGAATATCC-TTTTTTGAAATTTCATCCAGC--TTT-TTAAAATAAAAC
92060939 G
125 G
* *
92060940 AGGCAATATTTCGTGTTTGAAAGTTTGGGA-AGTCGTGCCCAATCGTGTTGGGCTTCAATTTTCC
1 AGGCAATATTTCGTGTTTGGAAGTTTGGGAGA-TCGTGCCCAATCGTGCTGGGCTTCAATTTTCC
* * *
92061004 ACTCGACTAAAATATGGAATATCCTTTTTTAAAATTTCATCCACGCTTTCTTAAAATAAAACG
65 ATTCGACTAAAATACGGAATATCCTTTTTTGAAATTTCATCCA-GCTTT-TTAAAATAAAACG
* * * * * ** *
92061067 AGGTAATATTTCATGCTTGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTTGATTTTTCA
1 AGGCAATATTTCGTGTTTGGAAGTTTGGGAGATCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
* * * ** *
92061132 TTCGACTAAAATACAGAATATCC--TTTTGAAATTCCATCGATG-TTTTCTCAATTTAAAATG
66 TTCGACTAAAATACGGAATATCCTTTTTTGAAATTTCATCCA-GCTTTT-T-AAAATAAAACG
* * * * * ** *
92061192 TGGCAATGTTTCGTATTTGGAAATTCGATAAATCGTGCCCAATCGTGCTGGG
1 AGGCAATATTTCGTGTTTGGAAGTTTGGGAGATCGTGCCCAATCGTGCTGGG
92061244 TTTCGGTTTA
Statistics
Matches: 354, Mismatches: 62, Indels: 34
0.79 0.14 0.08
Matches are distributed among these distances:
123 1 0.00
124 4 0.01
125 63 0.18
126 19 0.05
127 161 0.45
128 72 0.20
129 16 0.05
130 9 0.03
131 9 0.03
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (125 bp):
AGGCAATATTTCGTGTTTGGAAGTTTGGGAGATCGTGCCCAATCGTGCTGGGCTTCAATTTTCCA
TTCGACTAAAATACGGAATATCCTTTTTTGAAATTTCATCCAGCTTTTTAAAATAAAACG
Found at i:92072695 original size:45 final size:45
Alignment explanation
Indices: 92072637--92073254 Score: 328
Period size: 45 Copynumber: 13.8 Consensus size: 45
92072627 TTCAGCCACT
*
92072637 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGTAGATAGCA
1 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCA
* * * *
92072682 AGTTTTATCTTCCTGAAGTTGCAA-GAAGCAGACTAAAAGTTA-C-
1 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACT-GAAGATAGCA
* * * *
92072725 AGATCTTATC-TCCATGTA-TCAGCTATGGAGCAGA-TCGAAAAT-GACA
1 AG-TCTTATCTTCC-TGAAGT-TGCAATGGAGCAGACT-GAAGATAG-CA
* * *
92072771 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGTAGATAGCA
1 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCA
*
92072816 AGTCTTATCTTCCTGAAGTTGC-A-GGAAGCAGACTGAAAATTA-C-
1 AGTCTTATCTTCCTGAAGTTGCAATGG-AGCAGACTGAAGA-TAGCA
* * * *
92072859 AGATCTTATC-TCCATGTA-TCGACTATGGAGCAGA-TCGAAAAT-GACA
1 AG-TCTTATCTTCC-TGAAGTTG-CAATGGAGCAGACT-GAAGATAG-CA
* * *
92072905 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCA
1 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCA
* * * *
92072950 AGTCTTATCTTCCTGAAGATGC-A-GGAAGCAAACTAAAAGTTA-C-
1 AGTCTTATCTTCCTGAAGTTGCAATGG-AGCAGACT-GAAGATAGCA
* * * * *
92072993 AGATCTTATC-TCCATGTA-TCGGCTATGGAGCAGA-T-AAAAAATGACA
1 AG-TCTTATCTTCC-TGAAGT-TGCAATGGAGCAGACTGAAGATA-G-CA
* * * * **
92073039 AGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGACGGCA
1 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCA
* *
92073084 AGTCTTATCTTCCTAAAGTTGC-A-GGAAGCAGACTGAAAATTA-C-
1 AGTCTTATCTTCCTGAAGTTGCAATGG-AGCAGACTGAAGA-TAGCA
* ** * * *
92073127 AGATCTTATC-TCCATGTA-TCAACTATGGAGCAGA-TCGAAAATAACA
1 AG-TCTTATCTTCC-TGAAGT-TGCAATGGAGCAGACT-GAAGATAGCA
* * * **
92073173 AGTCTTATCTCCCTGAAGTTGCAGTTGAGCAGACTGAAGACGGCA
1 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCA
*
92073218 AGTATTATCTTCCTGAAGTTGC-A-GGAAGCAGACTGAA
1 AGTCTTATCTTCCTGAAGTTGCAATGG-AGCAGACTGAA
92073255 AATTACAGAT
Statistics
Matches: 434, Mismatches: 83, Indels: 113
0.69 0.13 0.18
Matches are distributed among these distances:
42 3 0.01
43 31 0.07
44 109 0.25
45 254 0.59
46 34 0.08
47 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (45 bp):
AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCA
Found at i:92072732 original size:89 final size:89
Alignment explanation
Indices: 92072637--92073271 Score: 347
Period size: 89 Copynumber: 7.1 Consensus size: 89
92072627 TTCAGCCACT
* * *
92072637 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGTAGATAGCAAGTTTTATCTTCCTGAAGTT
1 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGAAAATAGCAAGTCTTATCTTCCTGAAGTT
*
92072702 GCAAGAAGCAGACTAAAAGTTAC-
66 GCATGAAGCAGACTAAAAGTTACA
* * * *
92072725 AGATCTTATC-TCCATGTA-TCAGCTATGGAGCAGA-TCGAAAAT-GACAAGTCTTATCTCCCTG
1 AG-TCTTATCTTCC-TGAAGT-TGCAATGGAGCAGACT-GAAAATAG-CAAGTCTTATCTTCCTG
* ** *
92072786 AAGTTGCAGTGGAGCAGACT-GTAGATAGCA
61 AAGTTGCA-TGAAGCAGACTAAAAGTTA-CA
*
92072816 AGTCTTATCTTCCTGAAGTTGC-A-GGAAGCAGACTGAAAATTA-C-AGATCTTATC-TCCATGT
1 AGTCTTATCTTCCTGAAGTTGCAATGG-AGCAGACTGAAAA-TAGCAAG-TCTTATCTTCC-TGA
* * * *
92072876 A-TCGACTATGGAGCAGATCGAAAA-TGACA
62 AGTTG-C-ATGAAGCAGA-CTAAAAGTTACA
* * * * *
92072905 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTATCTTCCTGAAGAT
1 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGAAAATAGCAAGTCTTATCTTCCTGAAGTT
* *
92072970 GCAGGAAGCAAACTAAAAGTTAC-
66 GCATGAAGCAGACTAAAAGTTACA
* * * * * *
92072993 AGATCTTATC-TCCATGTA-TCGGCTATGGAGCAGA-T-AAAAAATGACAAGTCTTATCTCCCTA
1 AG-TCTTATCTTCC-TGAAGT-TGCAATGGAGCAGACTGAAAATA-G-CAAGTCTTATCTTCCTG
* * * *
92073054 AAGTTGTAGTGGAGCAGACTGAAGACG--GCA
61 AAGTTGCA-TGAAGCAGACT-AA-AAGTTACA
* *
92073084 AGTCTTATCTTCCTAAAGTTGC-A-GGAAGCAGACTGAAAATTA-C-AGATCTTATC-TCCATGT
1 AGTCTTATCTTCCTGAAGTTGCAATGG-AGCAGACTGAAAA-TAGCAAG-TCTTATCTTCC-TGA
** * * *
92073144 A-TCAACTATGGAGCAGATCGAAAA-TAACA
62 AGT-TGC-ATGAAGCAGA-CTAAAAGTTACA
* * * * ** *
92073173 AGTCTTATCTCCCTGAAGTTGCAGTTGAGCAGACTGAAGACGGCAAGTATTATCTTCCTGAAGTT
1 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGAAAATAGCAAGTCTTATCTTCCTGAAGTT
*
92073238 GCAGGAAGCAGACTGAAAA-TTAC-
66 GCATGAAGCAGACT-AAAAGTTACA
92073261 AGATCTTATCT
1 AG-TCTTATCT
92073272 CCATGTATCG
Statistics
Matches: 412, Mismatches: 78, Indels: 113
0.68 0.13 0.19
Matches are distributed among these distances:
87 4 0.01
88 39 0.09
89 235 0.57
90 97 0.24
91 34 0.08
92 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (89 bp):
AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGAAAATAGCAAGTCTTATCTTCCTGAAGTT
GCATGAAGCAGACTAAAAGTTACA
Found at i:92072792 original size:134 final size:133
Alignment explanation
Indices: 92072637--92073295 Score: 1052
Period size: 134 Copynumber: 4.9 Consensus size: 133
92072627 TTCAGCCACT
* * * * *
92072637 AGTCTTATCTTCCTGAAGTTGCAATGGAGCAGACTGTAGATAGCAAGTTTTATCTTCCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTATCTTCCTGAAGTT
*
92072702 GCAAGAAGCAGACT-AAAAGTTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGATCGAAAA
66 GCAGGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATGTATC-GCTATGGAGCAGATCGAAAA
92072766 TGACA
129 TGACA
* *
92072771 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGTAGATAGCAAGTCTTATCTTCCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTATCTTCCTGAAGTT
92072836 GCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGACTATGGAGCAGATCGAAAAT
66 GCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCG-CTATGGAGCAGATCGAAAAT
92072901 GACA
130 GACA
*
92072905 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTATCTTCCTGAAGAT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTATCTTCCTGAAGTT
* **
92072970 GCAGGAAGCAAACT-AAAAGTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAAAAAA
66 GCAGGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATGTATC-GCTATGGAGCAGATCGAAAA
92073034 TGACA
129 TGACA
* * * *
92073039 AGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGACGGCAAGTCTTATCTTCCTAAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTATCTTCCTGAAGTT
*
92073104 GCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCAACTATGGAGCAGATCGAAAAT
66 GCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATC-GCTATGGAGCAGATCGAAAAT
*
92073169 AACA
130 GACA
* * *
92073173 AGTCTTATCTCCCTGAAGTTGCAGTTGAGCAGACTGAAGACGGCAAGTATTATCTTCCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTATCTTCCTGAAGTT
92073238 GCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGACTATGGAGCAGAT
66 GCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCG-CTATGGAGCAGAT
92073296 TTTGGCCATC
Statistics
Matches: 492, Mismatches: 27, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
133 5 0.01
134 478 0.97
135 9 0.02
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (133 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCAAGTCTTATCTTCCTGAAGTT
GCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGCTATGGAGCAGATCGAAAATG
ACA
Found at i:92072848 original size:178 final size:178
Alignment explanation
Indices: 92072517--92072850 Score: 462
Period size: 178 Copynumber: 1.9 Consensus size: 178
92072507 CTTATTGTCT
* *
92072517 TGAAGTTGCAGGAAGCAGACTAAAAATTACAGATTTTATCTCCATGTATCAGCTATGGAGCAGAT
1 TGAAGTTGCAAGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGAT
* * * * * *
92072582 CAGAAATGGCGAGTCTTATCTCCATGTACCGGCTATGGAGCAGATTTCAGCCACTAGTCTTATCT
66 CAGAAATGACAAGTCTTATCTCCATGAACCGGCTATGGAGCAGATGTCAGACACAAGTCTTATCT
92072647 TCCTGAAGTTGCAATGGAGCAGACTGTAGATAGCAAGTTTTATCTTCC
131 TCCTGAAGTTGCAATGGAGCAGACTGTAGATAGCAAGTTTTATCTTCC
*
92072695 TGAAGTTGCAAGAAGCAGACTAAAAGTTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGAT
1 TGAAGTTGCAAGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGAT
* *** *
92072760 C-GAAAATGACAAGTCTTATCTCCCTGAAGTTGC-AGTGGAGCAGACTGT-AGATAGCAAGTCTT
66 CAG-AAATGACAAGTCTTATCTCCATGAACCGGCTA-TGGAGCAGA-TGTCAGACA-CAAGTCTT
92072822 ATCTTCCTGAAGTTGC-A-GGAAGCAGACTG
127 ATCTTCCTGAAGTTGCAATGG-AGCAGACTG
92072851 AAAATTACAG
Statistics
Matches: 137, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
177 4 0.03
178 108 0.79
179 25 0.18
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (178 bp):
TGAAGTTGCAAGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGAT
CAGAAATGACAAGTCTTATCTCCATGAACCGGCTATGGAGCAGATGTCAGACACAAGTCTTATCT
TCCTGAAGTTGCAATGGAGCAGACTGTAGATAGCAAGTTTTATCTTCC
Found at i:92075404 original size:127 final size:124
Alignment explanation
Indices: 92075271--92075753 Score: 452
Period size: 127 Copynumber: 3.8 Consensus size: 124
92075261 AGGATAATGA
*
92075271 AATATTTCGTGTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCATTCG
1 AATATTTCATGTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCATTCG
* * * * *
92075336 GCTAAAATACGGAATATCCTTTGGAAATTTCGTCCATACTTTTTAAAAAATTAAAAGGAGGC
66 ACTAAAATACGGAATATCCTTTTGAAATTTCATCCACACTTTTT--AAAA-TAAAACGAGGC
* * * * ** * * ** *
92075398 AATATTTCATATTTGGGGAGTTTGAGAGATAATGTCCAATCGTGCTGGGTTTCGTTTTGTTCATT
1 AATATTTCAT-GTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTT-TCCATT
* * *
92075463 CGACTAAATATA--GAATATCTTTTTTTTTAAA-TTCATCCACATTTTCTTAAAATAAAACGAGG
64 CGACTAAA-ATACGGAATATC---CTTTTGAAATTTCATCCACACTTT-TTAAAATAAAACGAGG
92075525 C
124 C
* * * * * *
92075526 AATATTTCATGTTTGGAAGTTTGGGAAGTCGTGCCCAATTGTGATGGGCTTCAAATTTCCACTCG
1 AATATTTCATGTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCATTCG
* * * *
92075591 ACTAAAATATGGAATATCCTTTTTTAAAATTTCATCCACGCTTTCTTAAAATAAAACGAGGT
66 ACTAAAATACGGAATATCC--TTTTGAAATTTCATCCACACTTT-TTAAAATAAAACGAGGC
** * ** * *
92075653 AATATTTTGTGCTT-GGAAGTTTGGGAGGTCGTGCCTAATCGTGCTGGATTTCGATTTTTCATTC
1 AATATTTCATG-TTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCATTC
* * *
92075717 GACTAAAATACAGAATATCTTTTTGAAATTCCATCCA
65 GACTAAAATACGGAATATCCTTTTGAAATTTCATCCA
92075754 TGTTTTCTCA
Statistics
Matches: 284, Mismatches: 59, Indels: 28
0.77 0.16 0.08
Matches are distributed among these distances:
125 18 0.06
126 19 0.07
127 143 0.50
128 66 0.23
129 16 0.06
130 14 0.05
131 8 0.03
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (124 bp):
AATATTTCATGTTGGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCATTCG
ACTAAAATACGGAATATCCTTTTGAAATTTCATCCACACTTTTTAAAATAAAACGAGGC
Found at i:92076651 original size:3 final size:3
Alignment explanation
Indices: 92076643--92076735 Score: 64
Period size: 3 Copynumber: 29.3 Consensus size: 3
92076633 CAAGACAATT
** *
92076643 TAA TAA TAA TAA TAA TAA TAA TAA TAA GCA -AA TGAA TAGA TAA CCAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TA-A TAA -TAA
* *
92076690 GTAGA CTAA TGAA TAA -AA TAA TAA TAA TAC TAA TAA CAA TAA TAA T
1 -TA-A -TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
92076736 GAGAAAGACA
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
2 3 0.04
3 53 0.74
4 13 0.18
5 3 0.04
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:92076828 original size:31 final size:32
Alignment explanation
Indices: 92076793--92076878 Score: 129
Period size: 31 Copynumber: 2.6 Consensus size: 32
92076783 TTATGAGAAG
92076793 TGAAATAATAATAAATAAACAAATATGGGGA-
1 TGAAATAATAATAAATAAACAAATATGGGGAT
92076824 TGAAATAATAATAAATAAACAAATATGGGGATT
1 TGAAATAATAATAAATAAACAAATATGGGGA-T
92076857 TGAGAATAAATAAATAAATAAA
1 TGA-AAT-AAT-AATAAATAAA
92076879 TAGACGAACG
Statistics
Matches: 50, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
31 31 0.62
33 3 0.06
34 3 0.06
35 3 0.06
36 10 0.20
ACGTcount: A:0.59, C:0.02, G:0.14, T:0.24
Consensus pattern (32 bp):
TGAAATAATAATAAATAAACAAATATGGGGAT
Found at i:92078722 original size:16 final size:16
Alignment explanation
Indices: 92078701--92078733 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
92078691 AGCAAAATCC
92078701 ATCTCCACAAACTTTT
1 ATCTCCACAAACTTTT
92078717 ATCTCCACAAACTTTT
1 ATCTCCACAAACTTTT
92078733 A
1 A
92078734 ACAAATGGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (16 bp):
ATCTCCACAAACTTTT
Found at i:92080350 original size:12 final size:12
Alignment explanation
Indices: 92080333--92080358 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
92080323 CAATTTTAAT
92080333 AATAAATGAACA
1 AATAAATGAACA
92080345 AATAAATGAACA
1 AATAAATGAACA
92080357 AA
1 AA
92080359 AGAGGAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (12 bp):
AATAAATGAACA
Found at i:92081316 original size:31 final size:30
Alignment explanation
Indices: 92081245--92081316 Score: 74
Period size: 31 Copynumber: 2.4 Consensus size: 30
92081235 TTCGTTAAAA
* *
92081245 AATATC-AATTGAACTATTTTTAAAATGTT
1 AATATCAAATTCAACTATTTTTAAAATATT
* * *
92081274 AATAATTAAATTCAACTTTTTTTGAAATATT
1 AAT-ATCAAATTCAACTATTTTTAAAATATT
92081305 GAATATCAAATT
1 -AATATCAAATT
92081317 TAGCTTAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
29 3 0.09
30 2 0.06
31 26 0.76
32 3 0.09
ACGTcount: A:0.43, C:0.07, G:0.06, T:0.44
Consensus pattern (30 bp):
AATATCAAATTCAACTATTTTTAAAATATT
Found at i:92081464 original size:16 final size:16
Alignment explanation
Indices: 92081445--92081493 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
92081435 GCATTACCAA
*
92081445 ATTTTAAAATTAATGT
1 ATTTTAAAATTAATAT
*
92081461 ATTTTAAATAATAATAT
1 ATTTTAAA-ATTAATAT
*
92081478 ATTGTTAAAATAAATA
1 ATT-TTAAAATTAATA
92081494 AATTAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 8 0.30
17 14 0.52
18 5 0.19
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (16 bp):
ATTTTAAAATTAATAT
Found at i:92084993 original size:21 final size:21
Alignment explanation
Indices: 92084964--92085010 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
92084954 CAGCTTCTTT
*
92084964 GCAGTGATGACAAACTGTTCC
1 GCAGCGATGACAAACTGTTCC
*
92084985 GCAGCGATGACAAACTGTTCT
1 GCAGCGATGACAAACTGTTCC
92085006 GCAGC
1 GCAGC
92085011 CTTTAAGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.21
Consensus pattern (21 bp):
GCAGCGATGACAAACTGTTCC
Found at i:92105689 original size:30 final size:31
Alignment explanation
Indices: 92105613--92105691 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 31
92105603 TAGATAAGTT
* *
92105613 TTTTTAATTATTTAAATAATGAAAAATAATG
1 TTTTTCATTATTTAAATAATGAAAAATAATA
*
92105644 TTATTTCA--A-TTAAATAAT-AAAAATATTA
1 TT-TTTCATTATTTAAATAATGAAAAATAATA
92105672 TTTTTCATTATTTAAATAAT
1 TTTTTCATTATTTAAATAAT
92105692 TTTAAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
27 5 0.12
28 10 0.24
29 10 0.24
30 10 0.24
31 2 0.05
32 4 0.10
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (31 bp):
TTTTTCATTATTTAAATAATGAAAAATAATA
Found at i:92111608 original size:34 final size:32
Alignment explanation
Indices: 92111561--92111627 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 32
92111551 TATTGAAAAA
92111561 TATTAAATATAAATAT-TTCAATAATAAATATT
1 TATTAAATATAAATATATT-AATAATAAATATT
92111593 TATTAAAATTATAAATATATTAATAATAAATATT
1 TATT-AAA-TATAAATATATTAATAATAAATATT
92111627 T
1 T
92111628 TGTAGTATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
32 4 0.12
33 3 0.09
34 23 0.72
35 2 0.06
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (32 bp):
TATTAAATATAAATATATTAATAATAAATATT
Found at i:92111623 original size:15 final size:16
Alignment explanation
Indices: 92111560--92111625 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 16
92111550 TTATTGAAAA
92111560 ATATTAAAT-ATAAAT
1 ATATTAAATAATAAAT
*
92111575 AT-TTCAATAATAAAT
1 ATATTAAATAATAAAT
*
92111590 ATTTATTAAAATTATAAAT
1 A--TATT-AAATAATAAAT
92111609 ATATT-AATAATAAAT
1 ATATTAAATAATAAAT
92111624 AT
1 AT
92111626 TTTGTAGTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
14 5 0.12
15 20 0.48
17 5 0.12
18 2 0.05
19 10 0.24
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATTAAATAATAAAT
Found at i:92117797 original size:23 final size:26
Alignment explanation
Indices: 92117770--92117820 Score: 72
Period size: 23 Copynumber: 2.1 Consensus size: 26
92117760 TATAGTCCGG
*
92117770 GTAAGCTTCCTG-AT-A-GGCTCTTT
1 GTAAGCTTCCCGAATAATGGCTCTTT
92117793 GTAAGCTTCCCGAATAATGGCTCTTT
1 GTAAGCTTCCCGAATAATGGCTCTTT
92117819 GT
1 GT
92117821 GCACTTCTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 11 0.46
24 2 0.08
25 1 0.04
26 10 0.42
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTAAGCTTCCCGAATAATGGCTCTTT
Found at i:92119853 original size:27 final size:27
Alignment explanation
Indices: 92119823--92119884 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
92119813 AAAATATGAA
*
92119823 TATTTTAATTATATAAAGATGAGTATT
1 TATTTTAATAATATAAAGATGAGTATT
* * ** *
92119850 TATTTAAATAATTTTTAGCTGAGTATT
1 TATTTTAATAATATAAAGATGAGTATT
92119877 TATTTTAA
1 TATTTTAA
92119885 CTTTTATTTA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.52
Consensus pattern (27 bp):
TATTTTAATAATATAAAGATGAGTATT
Found at i:92124813 original size:20 final size:20
Alignment explanation
Indices: 92124768--92124814 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
92124758 TATTTTTCTC
**
92124768 TATTTTTGAATCTATTATTA
1 TATTTTTGAAAATATTATTA
*
92124788 TGTTTTTGAAAATATT-TATA
1 TATTTTTGAAAATATTAT-TA
92124808 TATTTTT
1 TATTTTT
92124815 ATATATTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (20 bp):
TATTTTTGAAAATATTATTA
Found at i:92124822 original size:50 final size:51
Alignment explanation
Indices: 92124725--92124822 Score: 144
Period size: 50 Copynumber: 1.9 Consensus size: 51
92124715 ATAAAGTTTA
* * *
92124725 AATCTATTATTATAGTGTTTGAAAATATCTATCTATTTTTCTCTATTTTTG
1 AATCTATTATTATAGTGTTTGAAAATATCTATATATTTTTATATATTTTTG
* *
92124776 AATCTATTATTAT-GTTTTTGAAAATATTTATATATTTTTATATATTT
1 AATCTATTATTATAGTGTTTGAAAATATCTATATATTTTTATATATTT
92124823 ATTTGATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 29 0.69
51 13 0.31
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (51 bp):
AATCTATTATTATAGTGTTTGAAAATATCTATATATTTTTATATATTTTTG
Found at i:92138261 original size:33 final size:33
Alignment explanation
Indices: 92138224--92138347 Score: 230
Period size: 33 Copynumber: 3.8 Consensus size: 33
92138214 CTCTGTTTCA
92138224 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
92138257 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
92138290 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
92138323 GGTTGCTGGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
92138348 CAAGAAGAAA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.18, C:0.10, G:0.43, T:0.30
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:92140614 original size:16 final size:18
Alignment explanation
Indices: 92140581--92140631 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
92140571 ATTCTCTTTT
92140581 ATCCTCTTTCTCAACAAA
1 ATCCTCTTTCTCAACAAA
*
92140599 ATCCT-TTTCTC-CCAAA
1 ATCCTCTTTCTCAACAAA
*
92140615 ATTTCTCTTTCTCAACA
1 A-TCCTCTTTCTCAACA
92140632 GTATTCTCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
16 5 0.19
17 9 0.33
18 11 0.41
19 2 0.07
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.39
Consensus pattern (18 bp):
ATCCTCTTTCTCAACAAA
Found at i:92156028 original size:9 final size:9
Alignment explanation
Indices: 92156014--92156084 Score: 61
Period size: 9 Copynumber: 7.3 Consensus size: 9
92156004 AAAAAATTGC
92156014 TTTTTTAAT
1 TTTTTTAAT
92156023 TTTTTTAAT
1 TTTTTTAAT
*
92156032 AATTTTTAAT
1 -TTTTTTAAT
**
92156042 TTTAAAATAAT
1 TTT--TTTAAT
92156053 TTTTTTATATT
1 TTTTTTA-A-T
92156064 TTTTTTAAT
1 TTTTTTAAT
*
92156073 TTTTTAAAT
1 TTTTTTAAT
92156082 TTT
1 TTT
92156085 AAAAAATATT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
9 25 0.50
10 10 0.20
11 15 0.30
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:92156083 original size:40 final size:39
Alignment explanation
Indices: 92155986--92156090 Score: 131
Period size: 42 Copynumber: 2.6 Consensus size: 39
92155976 CATTATCTAA
92155986 TTAATTATTTTAATTTTAAAAAAATTGCTTTTTTAATTTTT
1 TTAATT-TTTTAATTTTAAAAAAATT-CTTTTTTAATTTTT
* *
92156027 TTAATAATTTTTAATTTTAAAATAATT-TTTTTATATTTTTT
1 TTAAT--TTTTTAATTTTAAAAAAATTCTTTTT-TAATTTTT
92156068 TTAATTTTTTAAATTTTAAAAAA
1 TTAATTTTTT-AATTTTAAAAAA
92156091 TATTAATTCA
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
39 5 0.09
40 16 0.28
41 17 0.30
42 18 0.32
43 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (39 bp):
TTAATTTTTTAATTTTAAAAAAATTCTTTTTTAATTTTT
Found at i:92156242 original size:13 final size:14
Alignment explanation
Indices: 92156219--92156247 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
92156209 GTTTGAGAGC
92156219 TAAAAAGATAAAAA
1 TAAAAAGATAAAAA
92156233 TAAAAA-ATAAAAA
1 TAAAAAGATAAAAA
92156246 TA
1 TA
92156248 GAGAGCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (14 bp):
TAAAAAGATAAAAA
Found at i:92243174 original size:28 final size:29
Alignment explanation
Indices: 92243112--92243187 Score: 68
Period size: 28 Copynumber: 2.7 Consensus size: 29
92243102 TTTTTAAATT
* * * *
92243112 ATAAGAATATTAAAATTTATTTGAAAATTT
1 ATAA-AATATTAAAATATATTTAAAAACTC
92243142 A-AAAATATTAAAATAT-TTTAAAAACTC
1 ATAAAATATTAAAATATATTTAAAAACTC
*
92243169 ATAAAA-ATTTACAATATAT
1 ATAAAATA-TTAAAATATAT
92243188 AAAAATTGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
27 10 0.26
28 24 0.63
29 3 0.08
30 1 0.03
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.38
Consensus pattern (29 bp):
ATAAAATATTAAAATATATTTAAAAACTC
Found at i:92243220 original size:17 final size:19
Alignment explanation
Indices: 92243200--92243259 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
92243190 AAATTGTAAC
*
92243200 TTTTTAAAT-ATGAAAA-A
1 TTTTTAAATCATAAAAATA
*
92243217 TTTTAAAATCATAAAAATA
1 TTTTTAAATCATAAAAATA
92243236 TTTTTACAATC-TAAAAATA
1 TTTTTA-AATCATAAAAATA
92243255 TTTTT
1 TTTTT
92243260 TTTCAATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 8 0.22
18 6 0.16
19 19 0.51
20 4 0.11
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (19 bp):
TTTTTAAATCATAAAAATA
Found at i:92243492 original size:24 final size:22
Alignment explanation
Indices: 92243464--92243522 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 22
92243454 TTTTAGAACT
* *
92243464 TTTTAATATTTTTAAATAATATA
1 TTTTAAAATTTTTAAA-AATAAA
* *
92243487 TATTTATAGATTTTTTAAAATAAA
1 T-TTTA-AAATTTTTAAAAATAAA
92243511 TTTTAAAATTTT
1 TTTTAAAATTTT
92243523 ACATAGTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 6 0.20
23 5 0.17
24 10 0.33
25 9 0.30
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTTAAAATTTTTAAAAATAAA
Found at i:92244081 original size:22 final size:21
Alignment explanation
Indices: 92244056--92244126 Score: 70
Period size: 24 Copynumber: 3.1 Consensus size: 21
92244046 TATTATTAAT
92244056 TTTAATATTTTTGAAATATATA
1 TTTAATATTTTT-AAATATATA
*
92244078 TTTAAAATATTTTATTAATATATA
1 TTT--AATATTTT-TAAATATATA
* *
92244102 TTTTAAAATTTTAAAATATATA
1 -TTTAATATTTTTAAATATATA
92244124 TTT
1 TTT
92244127 TTAAATTACT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
21 3 0.07
22 11 0.27
23 7 0.17
24 16 0.39
25 4 0.10
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (21 bp):
TTTAATATTTTTAAATATATA
Found at i:92244085 original size:13 final size:12
Alignment explanation
Indices: 92244059--92244110 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
92244049 TATTAATTTT
*
92244059 AATAT-TTTTGA
1 AATATATTTTAA
92244070 AATATATATTTAA
1 AATATAT-TTTAA
*
92244083 AATATTTTATTAA
1 AATATATT-TTAA
*
92244096 TATATATTTTAA
1 AATATATTTTAA
92244108 AAT
1 AAT
92244111 TTTAAAATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
11 5 0.15
12 8 0.24
13 20 0.61
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (12 bp):
AATATATTTTAA
Found at i:92244097 original size:24 final size:22
Alignment explanation
Indices: 92244064--92244126 Score: 81
Period size: 24 Copynumber: 2.8 Consensus size: 22
92244054 ATTTTAATAT
*
92244064 TTTTGAAATATATATTTAAAATA
1 TTTTAAAATATATATTTAAAA-A
* *
92244087 TTTTATTAATATATATTTTAAAA
1 TTTTA-AAATATATATTTAAAAA
92244110 TTTTAAAATATATATTT
1 TTTTAAAATATATATTT
92244127 TTAAATTACT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 11 0.31
23 10 0.29
24 14 0.40
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TTTTAAAATATATATTTAAAAA
Found at i:92244127 original size:22 final size:22
Alignment explanation
Indices: 92244054--92244133 Score: 88
Period size: 22 Copynumber: 3.5 Consensus size: 22
92244044 ATTATTATTA
* *
92244054 ATTTTAATATTTTTGAAATATAT
1 ATTTTAA-AATTTTAAAATATAT
* *
92244077 ATTTAAAATATTTTATTAATATAT
1 ATTTTAAA-ATTTTA-AAATATAT
92244101 ATTTTAAAATTTTAAAATATAT
1 ATTTTAAAATTTTAAAATATAT
*
92244123 ATTTTTAAATT
1 ATTTTAAAATT
92244134 ACTTTTTTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 18 0.38
23 16 0.33
24 14 0.29
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (22 bp):
ATTTTAAAATTTTAAAATATAT
Found at i:92244148 original size:22 final size:20
Alignment explanation
Indices: 92244123--92244180 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 20
92244113 TAAAATATAT
92244123 ATTTTTAAATTACTTTTTTTAA
1 ATTTTTAAATTA-TTTTTTT-A
*
92244145 ATTTTAAATATTATTTTTTTA
1 ATTTTTAA-ATTATTTTTTTA
*
92244166 ATATTTAAA-TATTTT
1 ATTTTTAAATTATTTT
92244181 AAACTTTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 6 0.19
20 1 0.03
21 7 0.22
22 14 0.44
23 4 0.12
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTTTAAATTATTTTTTTA
Found at i:92244180 original size:31 final size:33
Alignment explanation
Indices: 92244137--92244259 Score: 96
Period size: 31 Copynumber: 3.8 Consensus size: 33
92244127 TTAAATTACT
* *
92244137 TTTTTTAA-ATTTTAAA-TATTATTT-TTTTAA
1 TTTTATAATATTTTAAACTATTATTTATTTTAG
* *
92244167 TATTTA-AATATTTTAAACTTTTAAATTTGTTATTAG
1 T-TTTATAATATTTTAAACTATT--ATTTATT-TTAG
* *
92244203 TTTTATAATAATTTAAA-TATTATTTAATTT-G
1 TTTTATAATATTTTAAACTATTATTTATTTTAG
* *
92244234 TTTTATAATATTTTAAATTATAATTT
1 TTTTATAATATTTTAAACTATTATTT
92244260 TTAAATTATT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
30 3 0.04
31 28 0.37
32 12 0.16
33 5 0.07
34 4 0.05
35 9 0.12
36 14 0.19
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (33 bp):
TTTTATAATATTTTAAACTATTATTTATTTTAG
Found at i:92244182 original size:67 final size:65
Alignment explanation
Indices: 92244077--92244273 Score: 179
Period size: 67 Copynumber: 2.9 Consensus size: 65
92244067 TGAAATATAT
* *
92244077 ATTTAAAATATTTTATTAATATATATTTTAAA-ATTTTAAAATATATATTTTTAAATTACTTTTT
1 ATTT-AAATATTAT-TTAAT-T-TATTTTAAATATTTTAAATTATA-ATTTTTAAATTA-TTTTT
*
92244141 TTAA-A
60 ATAATA
* * * *
92244146 TTTTAAATATTATTT-TTTTAATATTTAAATATTTTAAACTTTTAAATTTGTT--ATTAGTTTTA
1 ATTTAAATATTATTTAATTT-AT-TTTAAATATTTTAAA-TTAT-AATTT-TTAAATTATTTTTA
92244208 TAATA
61 TAATA
*
92244213 ATTTAAATATTATTTAATTTGTTTTATAATATTTTAAATTATAATTTTTAAATTATTTTTA
1 ATTTAAATATTATTTAATTTATTTTA-AATATTTTAAATTATAATTTTTAAATTATTTTTA
92244274 AAGATATTCA
Statistics
Matches: 105, Mismatches: 12, Indels: 25
0.74 0.08 0.18
Matches are distributed among these distances:
64 3 0.03
65 8 0.08
66 30 0.29
67 41 0.39
68 17 0.16
69 6 0.06
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (65 bp):
ATTTAAATATTATTTAATTTATTTTAAATATTTTAAATTATAATTTTTAAATTATTTTTATAATA
Found at i:92244261 original size:14 final size:15
Alignment explanation
Indices: 92244236--92244268 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
92244226 TTAATTTGTT
92244236 TTATAATATTTTAAA
1 TTATAATATTTTAAA
92244251 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
92244265 TTAT
1 TTAT
92244269 TTTTAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:92245154 original size:208 final size:208
Alignment explanation
Indices: 92244791--92245261 Score: 879
Period size: 208 Copynumber: 2.3 Consensus size: 208
92244781 TTAATTTTAA
* *
92244791 TAATGCATACTTCATCCGGATAAAGTATGCATTAATAAAATTAAATTAAAATATTAAATAAGAAA
1 TAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAA
** *
92244856 TAAAATTATAAAACAATATGTTATTTGGAAAATAATTATTATTGTAATGAGATACATGTTTTATT
66 TAAAATTATAAAACAATATGTTATTTGGAAAATAAAAATTATTATAATGAGATACATGTTTTATT
92244921 AGGTATAAGTATTTAAAATTTTATTTTTGTAATGTGATACATGCGTAAATATATATATAATCATA
131 AGGTATAAGTATTTAAAATTTTATTTTTGTAATGTGATACATGCGTAAATATATATATAATCATA
92244986 TTACTGAATCTGC
196 TTACTGAATCTGC
92244999 TAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAA
1 TAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAA
*
92245064 TAAAATTATAAAATAATATGTTATTTGGAAAATAAAAATTATTATAATGAGATACATGTTTTATT
66 TAAAATTATAAAACAATATGTTATTTGGAAAATAAAAATTATTATAATGAGATACATGTTTTATT
92245129 AGGTATAAGTATTTAAAATTTTATTTTTGTAATGTGATACATGCGTAAATATATATATAATCATA
131 AGGTATAAGTATTTAAAATTTTATTTTTGTAATGTGATACATGCGTAAATATATATATAATCATA
92245194 TTACTGAATCTGC
196 TTACTGAATCTGC
*
92245207 TAATACATACTTCATCTGGATAAAGTATGCATTATTAAAATTAAATTAAAATATT
1 TAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATATT
92245262 TTTTAAAAAC
Statistics
Matches: 256, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
208 256 1.00
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (208 bp):
TAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAA
TAAAATTATAAAACAATATGTTATTTGGAAAATAAAAATTATTATAATGAGATACATGTTTTATT
AGGTATAAGTATTTAAAATTTTATTTTTGTAATGTGATACATGCGTAAATATATATATAATCATA
TTACTGAATCTGC
Found at i:92245808 original size:31 final size:28
Alignment explanation
Indices: 92245772--92245847 Score: 84
Period size: 31 Copynumber: 2.7 Consensus size: 28
92245762 TAAAAATCAT
92245772 AATTTAAAATGTTATAAAACAAATTAAACA
1 AATTTAAAATGTTATAAAACAAA-T-AACA
* * *
92245802 ATATTTAAATTATTATAAAACTAATAACA
1 A-ATTTAAAATGTTATAAAACAAATAACA
92245831 AATTTAAAA-GTT-TAAAA
1 AATTTAAAATGTTATAAAA
92245848 TATTTAAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 5 0.12
27 2 0.05
28 7 0.17
29 5 0.12
30 2 0.05
31 19 0.47
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (28 bp):
AATTTAAAATGTTATAAAACAAATAACA
Found at i:92245854 original size:17 final size:17
Alignment explanation
Indices: 92245832--92245864 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
92245822 CTAATAACAA
92245832 ATTTAAA-AGTTTAAAAT
1 ATTTAAATA-TTTAAAAT
92245849 ATTTAAATATTTAAAA
1 ATTTAAATATTTAAAA
92245865 AATGATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
ATTTAAATATTTAAAAT
Found at i:92245901 original size:22 final size:23
Alignment explanation
Indices: 92245847--92245888 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
92245837 AAAGTTTAAA
92245847 ATATTT-AAATATTTAAAAAATG
1 ATATTTAAAATATTTAAAAAATG
92245869 ATATTTAAAAT-TTTAAAAAA
1 ATATTTAAAATATTTAAAAAA
92245889 GTAATTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
ATATTTAAAATATTTAAAAAATG
Found at i:92245952 original size:26 final size:23
Alignment explanation
Indices: 92245897--92245955 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 23
92245887 AAGTAATTTC
*
92245897 AAAATATATATTTTAAAATTTTA
1 AAAATATATATTATAAAATTTTA
92245920 AAAATATATATTAATAAAATGTTT-
1 AAAATATATATT-ATAAAAT-TTTA
*
92245944 TAAATATATATT
1 AAAATATATATT
92245956 TCAAAAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 12 0.38
24 17 0.53
25 3 0.09
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
AAAATATATATTATAAAATTTTA
Found at i:92245962 original size:24 final size:21
Alignment explanation
Indices: 92245898--92245968 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 21
92245888 AGTAATTTCA
*
92245898 AAATATATATTTTAAAATTTT
1 AAATATATATTTAAAAATTTT
*
92245919 AAAAATATATATTAATAAAATGTTTT
1 --AAATATATATT--TAAAA-ATTTT
*
92245945 AAATATATATTTCAAAAAATTT
1 AAATATATATTT-AAAAATTTT
92245967 AA
1 AA
92245969 GATTAATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
22 6 0.15
23 15 0.38
24 11 0.28
25 4 0.10
26 4 0.10
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (21 bp):
AAATATATATTTAAAAATTTT
Found at i:92246714 original size:17 final size:17
Alignment explanation
Indices: 92246682--92246723 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
92246672 TCTAAAATAA
92246682 AATAATATTTTAATTTT
1 AATAATATTTTAATTTT
*
92246699 AATACATATTTTATTTTT
1 AATA-ATATTTTAATTTT
92246717 AA-AATAT
1 AATAATAT
92246724 AATTATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 4 0.17
17 5 0.22
18 14 0.61
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (17 bp):
AATAATATTTTAATTTT
Found at i:92262135 original size:25 final size:25
Alignment explanation
Indices: 92262096--92262151 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
92262086 TTCACTTTAT
** * *
92262096 TTATTATTTGTATTAAATTTAAGTA
1 TTATTATTTAAATTAAAATTAAATA
92262121 TTATTATTTAAATTAAAATTAAATA
1 TTATTATTTAAATTAAAATTAAATA
*
92262146 TAATTA
1 TTATTA
92262152 ATAATTATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.52
Consensus pattern (25 bp):
TTATTATTTAAATTAAAATTAAATA
Found at i:92265219 original size:12 final size:12
Alignment explanation
Indices: 92265181--92265219 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
92265171 CTAGCACTAC
92265181 AAGAAGAAGAGG
1 AAGAAGAAGAGG
* *
92265193 AAGAGGAATAGG
1 AAGAAGAAGAGG
*
92265205 AAGAAGAAGAAG
1 AAGAAGAAGAGG
92265217 AAG
1 AAG
92265220 GTGAGAGAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.03
Consensus pattern (12 bp):
AAGAAGAAGAGG
Found at i:92270017 original size:16 final size:15
Alignment explanation
Indices: 92269980--92270014 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
92269970 CACTTATTAA
*
92269980 ATTTTTGTATTATAT
1 ATTTTTGTATGATAT
92269995 ATTTTTGTATGATA-
1 ATTTTTGTATGATAT
92270009 ATTTTT
1 ATTTTT
92270015 TTGAAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (15 bp):
ATTTTTGTATGATAT
Found at i:92270113 original size:28 final size:28
Alignment explanation
Indices: 92270054--92270115 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
92270044 TAAAAAAATT
* * *
92270054 ATTTTATAATAAATAATATTTTATATAG
1 ATTTAATAATAAATAATATTTAATATAA
*
92270082 ATTTAATAATAATTAATATTTAAT-TAAA
1 ATTTAATAATAAATAATATTTAATAT-AA
92270110 ATTTAA
1 ATTTAA
92270116 CTTTGAAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (28 bp):
ATTTAATAATAAATAATATTTAATATAA
Found at i:92270344 original size:20 final size:20
Alignment explanation
Indices: 92270307--92270349 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
92270297 ACAATTTCAA
92270307 TAAAATATTAAAAATATTAAT
1 TAAAATATTAAAAATATT-AT
* *
92270328 TAAAAT-TTAAGATTATTAT
1 TAAAATATTAAAAATATTAT
92270347 TAA
1 TAA
92270350 TGTTAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 9 0.45
21 6 0.30
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
TAAAATATTAAAAATATTAT
Found at i:92290916 original size:25 final size:25
Alignment explanation
Indices: 92290880--92290934 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
92290870 CTTGGGTCTC
* *
92290880 ATTTTATCTTTTTAATTTTA-TTTA
1 ATTTTATCTTTTTAAATTAATTTTA
*
92290904 ATTTTCATTTTTTTAAATTAATTTTA
1 ATTTT-ATCTTTTTAAATTAATTTTA
92290930 ATTTT
1 ATTTT
92290935 TTATTTTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 5 0.19
25 12 0.46
26 9 0.35
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (25 bp):
ATTTTATCTTTTTAAATTAATTTTA
Found at i:92290941 original size:26 final size:24
Alignment explanation
Indices: 92290881--92290941 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 24
92290871 TTGGGTCTCA
* *
92290881 TTTTATCTTTTTAATTTTATTTAAT
1 TTTTAT-TTTTTAAATTAATTTAAT
*
92290906 TTTCATTTTTTTAAATTAATTTTAATT
1 TTTTA-TTTTTTAAATTAA-TTTAA-T
92290933 TTTTATTTT
1 TTTTATTTT
92290942 ATAGAAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
25 14 0.48
26 10 0.34
27 5 0.17
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTTATTTTTTAAATTAATTTAAT
Found at i:92291096 original size:22 final size:23
Alignment explanation
Indices: 92291071--92291120 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
92291061 ATTACTTAGG
92291071 TTTTTATAGAAAAA-ATTTTAAT
1 TTTTTATAGAAAAACATTTTAAT
* *
92291093 TTTTTATAGAAAAACCTTTTTAT
1 TTTTTATAGAAAAACATTTTAAT
92291116 TTTTT
1 TTTTT
92291121 TAATTTCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 14 0.56
23 11 0.44
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTTTATAGAAAAACATTTTAAT
Found at i:92293005 original size:17 final size:18
Alignment explanation
Indices: 92292983--92293021 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
92292973 TTTATTTTTT
92292983 TCTTTTTC-ATTTTAATA
1 TCTTTTTCTATTTTAATA
92293000 TC-TTTTCTATTTTAATA
1 TCTTTTTCTATTTTAATA
92293017 -CTTTT
1 TCTTTT
92293022 CATATCCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.21, C:0.13, G:0.00, T:0.67
Consensus pattern (18 bp):
TCTTTTTCTATTTTAATA
Found at i:92293020 original size:16 final size:16
Alignment explanation
Indices: 92292986--92293024 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
92292976 ATTTTTTTCT
92292986 TTTTCATTTTAATATC
1 TTTTCATTTTAATATC
92293002 TTTTCTATTTTAATA-C
1 TTTTC-ATTTTAATATC
92293018 TTTTCAT
1 TTTTCAT
92293025 ATCCATGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.09
16 11 0.50
17 9 0.41
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTCATTTTAATATC
Found at i:92296671 original size:11 final size:11
Alignment explanation
Indices: 92296657--92296696 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
92296647 TAGCCCATCA
92296657 TTAATTATAAT
1 TTAATTATAAT
92296668 TTAATTATAAT
1 TTAATTATAAT
* *
92296679 TTGATTAGAAT
1 TTAATTATAAT
*
92296690 TCAATTA
1 TTAATTA
92296697 CTAGAGTATC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (11 bp):
TTAATTATAAT
Found at i:92299343 original size:21 final size:20
Alignment explanation
Indices: 92299300--92299347 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
92299290 CATGTTTTTA
*
92299300 AAATG-ATTTGATTTCTACC
1 AAATGTATTTGATTTATACC
*
92299319 AAATGTATTTGAGTTTATTCC
1 AAATGTATTTGA-TTTATACC
92299340 AAAT-TATT
1 AAATGTATT
92299348 ATAAAGAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.20
20 10 0.40
21 10 0.40
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.46
Consensus pattern (20 bp):
AAATGTATTTGATTTATACC
Found at i:92301301 original size:21 final size:21
Alignment explanation
Indices: 92301272--92301321 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
92301262 GATCTTGAAA
*
92301272 TATCCATACTTACCCTAAAAG
1 TATCTATACTTACCCTAAAAG
* * * *
92301293 TATTTATACTTTCCTTAAAGG
1 TATCTATACTTACCCTAAAAG
92301314 TATCTATA
1 TATCTATA
92301322 ATTTCTTGTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.40
Consensus pattern (21 bp):
TATCTATACTTACCCTAAAAG
Found at i:92301326 original size:21 final size:21
Alignment explanation
Indices: 92301287--92301326 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
92301277 ATACTTACCC
* *
92301287 TAAAAGTATTTATACTTTCCT
1 TAAAAGTATCTATAATTTCCT
*
92301308 TAAAGGTATCTATAATTTC
1 TAAAAGTATCTATAATTTC
92301327 TTGTTTCTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.45
Consensus pattern (21 bp):
TAAAAGTATCTATAATTTCCT
Found at i:92303657 original size:6 final size:6
Alignment explanation
Indices: 92303609--92303655 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
92303599 TATCTTGCCC
* *
92303609 TCCCAG TCCCAG TCCCAG TCCCAG TCCCAG TCCCAC TCCCAC TCCCA
1 TCCCAG TCCCAG TCCCAG TCCCAG TCCCAG TCCCAG TCCCAG TCCCA
92303656 CTGCTACCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.17, C:0.55, G:0.11, T:0.17
Consensus pattern (6 bp):
TCCCAG
Found at i:92307436 original size:346 final size:347
Alignment explanation
Indices: 92307065--92307758 Score: 1345
Period size: 346 Copynumber: 2.0 Consensus size: 347
92307055 CAACCAACCA
92307065 CACAATTACAATGAAAAAAAAAAGGATTATTGCCCCAACCTTTCCTAAGAAAGAAAAATACTTTC
1 CACAATTACAATGAAAAAAAAAAGGATTATTGCCCCAACCTTTCCTAAGAAAGAAAAATACTTTC
92307130 TATAACTAACATTTATAGCTGACACTAAACATAAGAGAAACCATCAACAAGATGTTTGCAGTACA
66 TATAACTAACATTTATAGCTGACACTAAACATAAGAGAAACCATCAACAAGATGTTTGCAGTACA
92307195 TAAAATCATCTCTCACTAAAAAAATGCCAGATTTTTATCCTCCTAGACATCTTTAACCAAAATAA
131 TAAAATCATCTCTCACTAAAAAAATGCCAGATTTTTATCCTCCTAGACATCTTTAACCAAAATAA
92307260 AGCATAGAGATGAAAATAACAG-TAATAATAATAATAACAACAACAATAACAACAACCACCTTTT
196 AGCATAGAGATGAAAATAACAGATAATAATAATAATAACAACAACAATAACAACAACCACCTTTT
92307324 TCACCATAAATTAGAAATTAGAAAGTTCTTCATATAAGCGCTAAACCATTAAATACTACACTAAC
261 TCACCATAAATTAGAAATTAGAAAGTTCTTCATATAAGCGCTAAACCATTAAATACTACACTAAC
92307389 AAGTTTCAAGCAATTCAAAAAT
326 AAGTTTCAAGCAATTCAAAAAT
92307411 CACAATTACAATGAAAAAAAAAAGGATTATTGCCCCAACCTTTCCTAAGAAAGAAAAATACTTTC
1 CACAATTACAATGAAAAAAAAAAGGATTATTGCCCCAACCTTTCCTAAGAAAGAAAAATACTTTC
92307476 TATAACTAACATTTATAGCTGACACTAAACATAAGAGAAACCATCAACAAGATGTTTGCAGTACA
66 TATAACTAACATTTATAGCTGACACTAAACATAAGAGAAACCATCAACAAGATGTTTGCAGTACA
*
92307541 TAAAATCATCTCTCACTAAAAAAATGCCAGATTTTTATCCTCCTAGACATCTTTAACCAACATAA
131 TAAAATCATCTCTCACTAAAAAAATGCCAGATTTTTATCCTCCTAGACATCTTTAACCAAAATAA
92307606 AGCATAGAGATGAAAATAACAGTAATAATAATAATAATAACAACAACAATAACAACAACCACCTT
196 AGCATAGAGATGAAAATAACAG--ATAATAATAATAATAACAACAACAATAACAACAACCACCTT
*
92307671 TTTCACCATAAATTAGAAATTAGAAAGTTCTTCATATAAGCGCTGAACCATTAAATACTACACTA
259 TTTCACCATAAATTAGAAATTAGAAAGTTCTTCATATAAGCGCTAAACCATTAAATACTACACTA
92307736 ACAAGTTTCAAGCAATTCAAAAA
324 ACAAGTTTCAAGCAATTCAAAAA
92307759 ACCCAAACCT
Statistics
Matches: 343, Mismatches: 2, Indels: 3
0.99 0.01 0.01
Matches are distributed among these distances:
346 216 0.63
349 127 0.37
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.25
Consensus pattern (347 bp):
CACAATTACAATGAAAAAAAAAAGGATTATTGCCCCAACCTTTCCTAAGAAAGAAAAATACTTTC
TATAACTAACATTTATAGCTGACACTAAACATAAGAGAAACCATCAACAAGATGTTTGCAGTACA
TAAAATCATCTCTCACTAAAAAAATGCCAGATTTTTATCCTCCTAGACATCTTTAACCAAAATAA
AGCATAGAGATGAAAATAACAGATAATAATAATAATAACAACAACAATAACAACAACCACCTTTT
TCACCATAAATTAGAAATTAGAAAGTTCTTCATATAAGCGCTAAACCATTAAATACTACACTAAC
AAGTTTCAAGCAATTCAAAAAT
Found at i:92311145 original size:176 final size:175
Alignment explanation
Indices: 92310798--92311370 Score: 753
Period size: 176 Copynumber: 3.3 Consensus size: 175
92310788 TTAAATCTTT
* * * * * *
92310798 TCCATTGCCGATACATGGAGATAAGATTCGCCATCCTCGA--TGCTCCACAACTGCTTAGGGAAA
1 TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCAATCTGCTCCGCTACTGCTTAGAGAGA
* * ** *
92310861 T-AGATCTTCAATCTTTAGTCTGCTTTCTTGTTACCTCAGGAAGATAAGACTACAATCGGCAACA
66 TAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGGAAGATAAGACT-CAATCTTCAACC
92310925 TGCTCTCTTGCTACCTTAGAGAGATAAGGCTAGTGGCTAAAATCTGC
130 TGCTCTCTTGCTACCTTAGAGAGATAAGGCTAGT-GCTAAAATCTGC
* * *
92310972 TCCATTACCGATACATGGAGATAAGACTCGCCATCTTCGATCTGCTCCGCTACTGCTTAGAGAGA
1 TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCAATCTGCTCCGCTACTGCTTAGAGAGA
* *
92311037 TAAGATCTTCAATCTCCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCT
66 TAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCT
* * *
92311102 ACTCTCTTGCTACCTCAGAGAGATAAGGCCAGTAGCTAAAATCTGC
131 GCTCTCTTGCTACCTTAGAGAGATAAGGCTAGT-GCTAAAATCTGC
* * *
92311148 TCCATTGCCTG-TACATGGAGAGAAGATTCGCCATTTTCAATATGCTCCGCTACTGCTTA-AGGA
1 TCCATTGCC-GATACATGGAGATAAGATTCGCCATCTTCAATCTGCTCCGCTACTGCTTAGA-GA
* * * * *
92311211 GATAAGATCTTTAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTTAAC
64 GATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAAC
* * * *
92311276 CTGCTCTCTTGCTACGTTAGAGAGATAAGGCTTGGTGGTAAAATTTGC
129 CTGCTCTCTTGCTACCTTAGAGAGATAAGGC-TAGTGCTAAAATCTGC
*
92311324 TCCATTGCCGATACATGGAGATAA-ATTTCACCATCTTCAATCTGCTC
1 TCCATTGCCGATACATGGAGATAAGA-TTCGCCATCTTCAATCTGCTC
92311371 TACTGCAACT
Statistics
Matches: 349, Mismatches: 42, Indels: 14
0.86 0.10 0.03
Matches are distributed among these distances:
174 37 0.11
175 3 0.01
176 260 0.74
177 49 0.14
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (175 bp):
TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCAATCTGCTCCGCTACTGCTTAGAGAGA
TAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCT
GCTCTCTTGCTACCTTAGAGAGATAAGGCTAGTGCTAAAATCTGC
Found at i:92311787 original size:176 final size:173
Alignment explanation
Indices: 92311399--92311788 Score: 443
Period size: 172 Copynumber: 2.2 Consensus size: 173
92311389 ATAAATCTTA
* * * * * *
92311399 GGGCTTAAACCTGTTCCATTGCCGATACATAGAGATAAGATCCACCTCTTTCGATCTACTCCGCT
1 GGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCTCTCTCAATCTACTCCGCT
* * *
92311464 TCTGTTCAGGGAAATAAGATCTTCAATCTTTAGTCTGCTTCCTTACTACCTCAGGAAGATAAGAC
66 ACTGTTCAGGGAAATAAGATATTCAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGAC
* * *
92311529 TACAATCACCAACTTGTTACTACTTCAGAGAGATAAGGTCAAT
131 TACAATCACCAACCTGTTACTACCTCAGAGAGACAAGGTCAAT
* * * *
92311572 -AGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT-TCTCAATCTGCTCCGC
1 GGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACC-TCTCTCAATCTACTCCGC
* * *
92311635 TACTGCTT-AGGGAGATAAGATATTCAATCTTCAGTCTGTTTCCTTGCTACCTCAGGAAGATAAG
65 TACTG-TTCAGGGAAATAAGATATTCAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAG
* ** *
92311699 ACT-CATTCTTCAACCTGCTCT-CTTGTTACCTCAGAGAGACAAGG-C-TT
129 ACTACAATCACCAACCTG-T-TAC----TACCTCAGAGAGACAAGGTCAAT
92311746 GGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATT
1 -GGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATT
92311789 TGCCTGTTCC
Statistics
Matches: 182, Mismatches: 25, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
171 10 0.05
172 111 0.61
173 4 0.02
174 1 0.01
175 1 0.01
176 55 0.30
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (173 bp):
GGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCTCTCTCAATCTACTCCGCT
ACTGTTCAGGGAAATAAGATATTCAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGAC
TACAATCACCAACCTGTTACTACCTCAGAGAGACAAGGTCAAT
Found at i:92311891 original size:147 final size:147
Alignment explanation
Indices: 92311657--92312040 Score: 689
Period size: 147 Copynumber: 2.6 Consensus size: 147
92311647 AGATAAGATA
* *
92311657 TTCAATCTTCAGTCTGTTTCCTTGCTACCTCAGGAAGATAAGAC-TCATTCTTCAACCTGCTCTC
1 TTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCTC
* *
92311721 TTGTTACCTCAGAGAGACAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAG
66 TTGCTACCTCAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAG
*
92311786 ATTTGCCTGTTCCAATC
131 ATTTGCCTCTTCCAATC
*
92311803 TTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGACAAGACTTCAATCTTCAACCTGCTCTC
1 TTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCTC
92311868 TTGCTACCTCAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAG
66 TTGCTACCTCAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAG
92311933 ATTTGCCTCTTCCAATC
131 ATTTGCCTCTTCCAATC
* *
92311950 TTCAATCTTCAGTCTGCTTCCTTGCTACCTAAGGAAGATAAGACTTCAATCTTCATCCTGCTCTC
1 TTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCTC
92312015 TTGCTACCTCAGAGAGATAAGGCTTG
66 TTGCTACCTCAGAGAGATAAGGCTTG
92312041 TAATCTTTGA
Statistics
Matches: 228, Mismatches: 9, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
146 42 0.18
147 186 0.82
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (147 bp):
TTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCTC
TTGCTACCTCAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAG
ATTTGCCTCTTCCAATC
Done.