Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 283 of 311
Found at i:92612888 original size:14 final size:14
Alignment explanation
Indices: 92612869--92612897 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
92612859 AGCTTAATAG
92612869 TATATTTTAAAAAA
1 TATATTTTAAAAAA
92612883 TATATTTTAAAAAA
1 TATATTTTAAAAAA
92612897 T
1 T
92612898 TTGAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATTTTAAAAAA
Found at i:92613058 original size:13 final size:13
Alignment explanation
Indices: 92612987--92613058 Score: 54
Period size: 13 Copynumber: 5.2 Consensus size: 13
92612977 ATTATGTACT
*
92612987 AAAATAATATAAA
1 AAAATAAAATAAA
92613000 AAAATAAAATACAA
1 AAAATAAAATA-AA
** *
92613014 AAATAGTATATTTTAA
1 AAA-A-TA-AAATAAA
**
92613030 AAAATAAAATCCA
1 AAAATAAAATAAA
92613043 AAAATAAAATAAA
1 AAAATAAAATAAA
92613056 AAA
1 AAA
92613059 CAAACGGCCA
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
13 27 0.60
14 7 0.16
15 2 0.04
16 7 0.16
17 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.22
Consensus pattern (13 bp):
AAAATAAAATAAA
Found at i:92613482 original size:13 final size:12
Alignment explanation
Indices: 92613462--92613497 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
92613452 TAGTATATTT
92613462 TAAAAAATAAAA
1 TAAAAAATAAAA
*
92613474 TCCAAAAATAAAA
1 T-AAAAAATAAAA
92613487 TAAAAAATAAA
1 TAAAAAATAAA
92613498 CAGCCAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.17
Consensus pattern (12 bp):
TAAAAAATAAAA
Found at i:92613586 original size:12 final size:13
Alignment explanation
Indices: 92613562--92613604 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
92613552 TTGAAACATT
*
92613562 ATATACTAAAATA
1 ATATACAAAAATA
92613575 ATATA-AAAAATA
1 ATATACAAAAATA
* *
92613587 AAATACGAAAATA
1 ATATACAAAAATA
92613600 ATATA
1 ATATA
92613605 TTTTAAAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (13 bp):
ATATACAAAAATA
Found at i:92613597 original size:25 final size:25
Alignment explanation
Indices: 92613564--92613643 Score: 88
Period size: 25 Copynumber: 3.0 Consensus size: 25
92613554 GAAACATTAT
*
92613564 ATACTAAAATAATATAAAAAATAAA
1 ATACGAAAATAATATAAAAAATAAA
92613589 ATACGAAAATAATATATTTTAAAAAGTAAA
1 ATACGAAAATAATATA----AAAAA-TAAA
* *
92613619 ATCCGAAAATAAAATAAAAAATAAA
1 ATACGAAAATAATATAAAAAATAAA
92613644 CGGCCAAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
25 19 0.40
26 5 0.11
29 5 0.11
30 18 0.38
ACGTcount: A:0.68, C:0.05, G:0.04, T:0.24
Consensus pattern (25 bp):
ATACGAAAATAATATAAAAAATAAA
Found at i:92613734 original size:12 final size:13
Alignment explanation
Indices: 92613717--92613752 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
92613707 ATTATGTACT
92613717 AAAATAATATA-A
1 AAAATAATATACA
*
92613729 AAAATAAAATACA
1 AAAATAATATACA
92613742 AAAATAATATA
1 AAAATAATATA
92613753 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAATAATATACA
Found at i:92613773 original size:54 final size:55
Alignment explanation
Indices: 92613680--92613784 Score: 133
Period size: 54 Copynumber: 1.9 Consensus size: 55
92613670 ATTAATATAA
* * * *
92613680 AAAATACAAAAATAATACATTTGAAACATTATGTACT-AAAATAATATAAAAAAT
1 AAAATACAAAAATAATACATTTGAAAAAATATGAACTAAAAATAAAATAAAAAAT
* *
92613734 AAAATACAAAAATAATATATTTTAAAAAATA-GAATCTAAAAATAAAATAAA
1 AAAATACAAAAATAATACATTTGAAAAAATATGAA-CTAAAAATAAAATAAA
92613785 TACCAAAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
53 2 0.05
54 29 0.67
55 12 0.28
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.27
Consensus pattern (55 bp):
AAAATACAAAAATAATACATTTGAAAAAATATGAACTAAAAATAAAATAAAAAAT
Found at i:92613776 original size:148 final size:148
Alignment explanation
Indices: 92612864--92613784 Score: 1354
Period size: 147 Copynumber: 6.3 Consensus size: 148
92612854 AGAATAGCTT
** ** * *
92612864 AATAGTATATTTTAAAAAATATATTTTAAAAAATTTGAAAATAAAATAAAAA-GACCAAAATTAG
1 AATAGTATATTTTAAAAAATA-AAATCCAAAAA--T-AAAATAAAA-AAAAACGGCCAAAATCAG
* *
92612928 AGTTTTTTACTAAATTAATAT-AAATATACTAAAATAATACATATGAAACATTATGTACTAAAAT
61 AGTTTTTTACTAAATTAATATAAAAAATACTAAAATAATACATTTGAAACATTATGTACTAAAAT
*
92612992 AATATAAAAAAATAAAATACAAA
126 AATATAAAAAAATAAAATACGAA
92613015 AATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAACAAACGGCCAAAATCAGAGTT
1 AATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAA-AAACGGCCAAAATCAGAGTT
92613080 TTTTACTAAATTAATATAAAAAAT--TAAAATAATACATTTGAAACATTATGTACTAAAATAATA
65 TTTTACTAAATTAATATAAAAAATACTAAAATAATACATTTGAAACATTATGTACTAAAATAATA
92613143 TAAAAAAATAAAATACGAA
130 TAAAAAAATAAAATACGAA
* * *
92613162 AATAGTATATTTTAAAAAATAAAATCCAAAAATAAAAT---AAAAAAGGGCCAAAATCACAGATT
1 AATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAAAAACGGCCAAAATCAGAGTTT
*
92613224 TTTACTAAATTAATATAAAAAAAACTAAAATAATACA--TGAAACATTATGTACTAAAATAATAT
66 TTTACTAAATTAATATAAAAAATACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT
92613287 -AAAAAATAAAATACGAA
131 AAAAAAATAAAATACGAA
* * * *
92613304 AATAGTATATTTTAAAAAATAAAATCCGAAAAT-AAA-AATATAAAAGGGCCAAAATCAGAGTTT
1 AATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAAAAACGGCCAAAATCAGAG-TT
* * *
92613367 TTTTTCTAAATTAATATAAAAAA-ACTAAAATAATACATTTGAAATATTATTTACTAAAATAATA
65 TTTTACTAAATTAATATAAAAAATACTAAAATAATACATTTGAAACATTATGTACTAAAATAATA
92613431 TAAAAAAATAAAATACGAA
130 TAAAAAAATAAAATACGAA
* *
92613450 AATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAATAAACAGCCAAAACCAGAGTT
1 AATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAA-AAACGGCCAAAATCAGAGTT
* *
92613515 TTTTACTAAATTAATAT-AAAAA-ACTAAAAAAATACATTTGAAACATTATATACTAAAATAATA
65 TTTTACTAAATTAATATAAAAAATACTAAAATAATACATTTGAAACATTATGTACTAAAATAATA
92613578 T-AAAAAATAAAATACGAA
130 TAAAAAAATAAAATACGAA
* * *
92613596 AATAATATATTTTAAAAAGTAAAATCCGAAAATAAAATAAAAAATAAACGGCCAAAATCAGAGTT
1 AATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAA-AAACGGCCAAAATCAGAGTT
*
92613661 TTTTACTAAATTAATATAAAAAATACAAAAATAATACATTTGAAACATTATGTACTAAAATAATA
65 TTTTACTAAATTAATATAAAAAATACTAAAATAATACATTTGAAACATTATGTACTAAAATAATA
*
92613726 T-AAAAAATAAAATACAAA
130 TAAAAAAATAAAATACGAA
* * *
92613744 AATAATATATTTTAAAAAATAGAATCTAAAAATAAAATAAA
1 AATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAA
92613785 TACCAAAATA
Statistics
Matches: 710, Mismatches: 43, Indels: 37
0.90 0.05 0.05
Matches are distributed among these distances:
141 3 0.00
142 49 0.07
143 99 0.14
144 26 0.04
145 36 0.05
146 145 0.20
147 158 0.22
148 146 0.21
149 20 0.03
150 7 0.01
151 21 0.03
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (148 bp):
AATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAAAAACGGCCAAAATCAGAGTTT
TTTACTAAATTAATATAAAAAATACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT
AAAAAAATAAAATACGAA
Found at i:92613793 original size:435 final size:429
Alignment explanation
Indices: 92612901--92613793 Score: 1401
Period size: 435 Copynumber: 2.1 Consensus size: 429
92612891 AAAAAATTTG
* * *
92612901 AAAATAAAATAAAAAGACCAAAATTAGAGTTTTTTACTAAATTAATATAAATATACTAAAATAAT
1 AAAATAAAAT-AAAA-ACCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAAATAAT
92612966 ACATATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACAAAAATAGTATATTTTAAA
64 ACATATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACAAAAATAGTATATTTTAAA
* *
92613031 AAATAAAATCCAAAAATAAAATAAAAAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATA
129 AAATAAAATCCAAAAATAAAATAAAAAACAAACAGCCAAAACCAGAGTTTTTTACTAAATTAATA
* * *
92613096 TAAAAAATTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGA
194 TAAAAAACTAAAAAAATACATTTGAAACATTATATACTAAAATAATATAAAAAAATAAAATACGA
* *
92613161 AAATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAAGGGCCAAAATCACAGATTTT
259 AAATAATATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAACGGCCAAAATCACAGATTTT
*
92613226 TACTAAATTAATATAAAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAA
324 TACTAAATTAATATAAAAAAAACAAAAATAATACATGAAACATTATGTACTAAAATAATATAAAA
* * *
92613291 AATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCG
389 AATAAAATACAAAAATAATATATTTTAAAAAATAAAATCCA
*
92613332 AAAATAAAAATATAAAAGGGCCAAAATCAGAGTTTTTTTTCTAAATTAATATAAAAAAACTAAAA
1 AAAAT-AAAATA-AAAA---CCAAAATCAGAG-TTTTTTACTAAATTAATATAAAAAAACTAAAA
* * * *
92613397 TAATACATTTGAAATATTATTTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATATTT
60 TAATACATATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACAAAAATAGTATATTT
*
92613462 TAAAAAATAAAATCCAAAAATAAAATAAAAAATAAACAGCCAAAACCAGAGTTTTTTACTAAATT
125 TAAAAAATAAAATCCAAAAATAAAATAAAAAACAAACAGCCAAAACCAGAGTTTTTTACTAAATT
92613527 AATATAAAAAACTAAAAAAATACATTTGAAACATTATATACTAAAATAATAT-AAAAAATAAAAT
190 AATATAAAAAACTAAAAAAATACATTTGAAACATTATATACTAAAATAATATAAAAAAATAAAAT
* *
92613591 ACGAAAATAATATATTTTAAAAAGTAAAATCCGAAAATAAAATAAAAAATAAACGGCCAAAATCA
255 ACGAAAATAATATATTTTAAAAAATAAAATCCAAAAATAAAAT---AAA-AAACGGCCAAAATCA
* * *
92613656 GAGTTTTTTACTAAATTAATATAAAAAATACAAAAATAATACATTTGAAACATTATGTACTAAAA
316 CAGATTTTTACTAAATTAATATAAAAAAAACAAAAATAATACA--TGAAACATTATGTACTAAAA
* *
92613721 TAATATAAAAAATAAAATACAAAAATAATATATTTTAAAAAATAGAATCTA
379 TAATATAAAAAATAAAATACAAAAATAATATATTTTAAAAAATAAAATCCA
*
92613772 AAAATAAAATAAATACCAAAAT
1 AAAATAAAATAAAAACCAAAAT
92613794 ATATTAAACT
Statistics
Matches: 422, Mismatches: 28, Indels: 20
0.90 0.06 0.04
Matches are distributed among these distances:
431 7 0.02
432 8 0.02
434 63 0.15
435 208 0.49
437 3 0.01
438 56 0.13
439 6 0.01
440 71 0.17
ACGTcount: A:0.60, C:0.08, G:0.05, T:0.27
Consensus pattern (429 bp):
AAAATAAAATAAAAACCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAAATAATAC
ATATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACAAAAATAGTATATTTTAAAAA
ATAAAATCCAAAAATAAAATAAAAAACAAACAGCCAAAACCAGAGTTTTTTACTAAATTAATATA
AAAAACTAAAAAAATACATTTGAAACATTATATACTAAAATAATATAAAAAAATAAAATACGAAA
ATAATATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAACGGCCAAAATCACAGATTTTTA
CTAAATTAATATAAAAAAAACAAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAA
TAAAATACAAAAATAATATATTTTAAAAAATAAAATCCA
Found at i:92620118 original size:22 final size:22
Alignment explanation
Indices: 92620092--92620133 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
92620082 AAAATTACCT
92620092 TTTCTTTTCTTTCT-TCTTCTCC
1 TTTC-TTTCTTTCTATCTTCTCC
92620114 TTTCTTTCTTTCTATCTTCT
1 TTTCTTTCTTTCTATCTTCT
92620134 TCTTCTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTCTTTCTTTCTATCTTCTCC
Found at i:92620266 original size:27 final size:27
Alignment explanation
Indices: 92620232--92620284 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
92620222 AGGCACCGCT
92620232 GGTGCCGCCTGTAGGGTACCCTCCACC
1 GGTGCCGCCTGTAGGGTACCCTCCACC
* *
92620259 GGTGCCGCTTGTGGGGTACCCTCCAC
1 GGTGCCGCCTGTAGGGTACCCTCCAC
92620285 TAATATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.09, C:0.38, G:0.32, T:0.21
Consensus pattern (27 bp):
GGTGCCGCCTGTAGGGTACCCTCCACC
Found at i:92620829 original size:10 final size:9
Alignment explanation
Indices: 92620803--92620849 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
92620793 TCTCCTTTCC
*
92620803 TTTTCTATT
1 TTTTCTCTT
92620812 TATTTCT-TT
1 T-TTTCTCTT
*
92620821 CTTTCTCTT
1 TTTTCTCTT
92620830 TTTTCCTCTT
1 TTTT-CTCTT
92620840 TTTTCTCTT
1 TTTTCTCTT
92620849 T
1 T
92620850 CTTTTTTCCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
8 5 0.15
9 14 0.42
10 14 0.42
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTTCTCTT
Found at i:92620869 original size:22 final size:23
Alignment explanation
Indices: 92620826--92620886 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
92620816 TCTTTCTTTC
* **
92620826 TCTTTTTTCCTCTTTTTTCTCTT
1 TCTTTTTTCCTCTTCTCGCTCTT
92620849 TCTTTTTTCC-CTTCTCGCTCTT
1 TCTTTTTTCCTCTTCTCGCTCTT
* * *
92620871 TCCTTCTTCTTCTTCT
1 TCTTTTTTCCTCTTCT
92620887 TCTCTTCTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
22 16 0.52
23 15 0.48
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.66
Consensus pattern (23 bp):
TCTTTTTTCCTCTTCTCGCTCTT
Found at i:92623903 original size:15 final size:15
Alignment explanation
Indices: 92623885--92623916 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
92623875 ATCGTAACTT
92623885 ATATTCAATGATCTC
1 ATATTCAATGATCTC
*
92623900 ATATTGAATGATCTC
1 ATATTCAATGATCTC
92623915 AT
1 AT
92623917 GCTATTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.41
Consensus pattern (15 bp):
ATATTCAATGATCTC
Found at i:92625928 original size:101 final size:103
Alignment explanation
Indices: 92625810--92626017 Score: 303
Period size: 105 Copynumber: 2.0 Consensus size: 103
92625800 ATTTTTAACT
*
92625810 AATTTGCATGAAATAATAGTAATAGAAATATT-AAAAAAAAA-TTATAAAGTTAGTTTGTTATTG
1 AATTTGCATGAAATAATAGTAATAGAAATATTAAAAAAAAAAGTTATAAAGTTAGTTTGTTAATG
* ** * *
92625873 TACATTCTAATGTAAGTCAACTGCAAATTAGATTTATA
66 GACATTCTAACATAAGTCAACTACAAATTAGATATATA
* * *
92625911 AATTTGCATGAAATAATAGTTATCGAAATATTAAAAAAAAAAAAGTTATAAAGTTGGTTTGTTAA
1 AATTTGCATGAAATAATAGTAATAGAAATATT--AAAAAAAAAAGTTATAAAGTTAGTTTGTTAA
92625976 TGGACATTCTAACATAAGTCAACTACAAATTAGATATATA
64 TGGACATTCTAACATAAGTCAACTACAAATTAGATATATA
92626016 AA
1 AA
92626018 ATCTATTATA
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
101 30 0.32
104 9 0.10
105 55 0.59
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (103 bp):
AATTTGCATGAAATAATAGTAATAGAAATATTAAAAAAAAAAGTTATAAAGTTAGTTTGTTAATG
GACATTCTAACATAAGTCAACTACAAATTAGATATATA
Found at i:92629011 original size:18 final size:19
Alignment explanation
Indices: 92628974--92629010 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
92628964 TTGGTGGGAA
92628974 TATAAAT-TTTAGAGTTTT
1 TATAAATATTTAGAGTTTT
*
92628992 TATAAATATTTTGAGTTTT
1 TATAAATATTTAGAGTTTT
92629011 AAAAATAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (19 bp):
TATAAATATTTAGAGTTTT
Found at i:92629016 original size:18 final size:20
Alignment explanation
Indices: 92628979--92629017 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
92628969 GGGAATATAA
*
92628979 ATTTTAGAGTTTTTATAAAT
1 ATTTTAGAGTTTTTAAAAAT
92628999 ATTTT-GAG-TTTTAAAAAT
1 ATTTTAGAGTTTTTAAAAAT
92629017 A
1 A
92629018 ACATTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 3 0.17
20 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.51
Consensus pattern (20 bp):
ATTTTAGAGTTTTTAAAAAT
Found at i:92629980 original size:19 final size:19
Alignment explanation
Indices: 92629950--92629990 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
92629940 GGAAAGAAAG
92629950 AAAGAAAGGAAGAAAGGAGA
1 AAAGAAAGGAAGAAAGG-GA
92629970 AAAGAAA-GAAGAAAGGGA
1 AAAGAAAGGAAGAAAGGGA
92629988 AAA
1 AAA
92629991 TTGAAGGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 9 0.43
20 7 0.33
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (19 bp):
AAAGAAAGGAAGAAAGGGA
Found at i:92631056 original size:6 final size:6
Alignment explanation
Indices: 92631047--92631079 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
92631037 TGTGTACCGC
*
92631047 TACTGC TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
92631080 CCTTACAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:92631085 original size:18 final size:18
Alignment explanation
Indices: 92631047--92631085 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
92631037 TGTGTACCGC
**
92631047 TACTGCTACTGTTACTGT
1 TACTGCTACTGTTACCCT
*
92631065 TACTGTTACTGTTACCCT
1 TACTGCTACTGTTACCCT
92631083 TAC
1 TAC
92631086 AGTGTATTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.44
Consensus pattern (18 bp):
TACTGCTACTGTTACCCT
Found at i:92631493 original size:18 final size:18
Alignment explanation
Indices: 92631472--92631508 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
92631462 TGAATGTCTT
*
92631472 TCAGATACTGAACACAAG
1 TCAGATACTAAACACAAG
92631490 TCAGATACTAAACACAAG
1 TCAGATACTAAACACAAG
92631508 T
1 T
92631509 TATTACTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.19
Consensus pattern (18 bp):
TCAGATACTAAACACAAG
Found at i:92638587 original size:39 final size:39
Alignment explanation
Indices: 92638533--92638705 Score: 287
Period size: 39 Copynumber: 4.5 Consensus size: 39
92638523 CCTTGTGTGA
* * *
92638533 GGGCTAAGTCCCGAAGGCATTCATGCTGATGTTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCC
92638572 GGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCC
92638611 GGGCT-A-TCCCGAAGGCATTCGTGCTGGTATTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCC
* *
92638648 GGGCTATGTCCCGAAGGCATTCGTGCTGGTGTTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCC
92638687 GGGCTAAGTCCCGAAGGCA
1 GGGCTAAGTCCCGAAGGCA
92638706 ATTGTGTTGG
Statistics
Matches: 126, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
37 36 0.29
38 1 0.01
39 89 0.71
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCC
Found at i:92638667 original size:76 final size:78
Alignment explanation
Indices: 92638533--92638705 Score: 287
Period size: 76 Copynumber: 2.2 Consensus size: 78
92638523 CCTTGTGTGA
*
92638533 GGGCTAAGTCCCGAAGGCATTCATGCTGATGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 GGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
92638598 TGGTATTATATCC
66 TGGTATTATATCC
* * *
92638611 GGGCT-A-TCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTATGTCCCGAAGGCATTCGTGC
1 GGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
92638674 TGGTGTTATATCC
66 TGGTATTATATCC
92638687 GGGCTAAGTCCCGAAGGCA
1 GGGCTAAGTCCCGAAGGCA
92638706 ATTGTGTTGG
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
76 70 0.80
77 2 0.02
78 16 0.18
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (78 bp):
GGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
TGGTATTATATCC
Found at i:92644262 original size:22 final size:22
Alignment explanation
Indices: 92644212--92644263 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
92644202 ATACTTGTTA
92644212 AAATTTT-TATAATTTATATTT
1 AAATTTTCTATAATTTATATTT
* *
92644233 AAACTTTCTATACTTTATATTT
1 AAATTTTCTATAATTTATATTT
*
92644255 ATATTTTCT
1 AAATTTTCT
92644264 CATCAACCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.60
Consensus pattern (22 bp):
AAATTTTCTATAATTTATATTT
Found at i:92644901 original size:11 final size:11
Alignment explanation
Indices: 92644885--92644914 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
92644875 AATTTATATT
92644885 TAAAAATTATA
1 TAAAAATTATA
*
92644896 TAAAAATAATA
1 TAAAAATTATA
92644907 TAAAAATT
1 TAAAAATT
92644915 TAATATGGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:92645172 original size:13 final size:13
Alignment explanation
Indices: 92645151--92645185 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
92645141 TGGTTAATTG
*
92645151 AATGAAAGAACAA
1 AATGGAAGAACAA
92645164 AATGGAAGAACAA
1 AATGGAAGAACAA
92645177 AATGGAAGA
1 AATGGAAGA
92645186 TATTGTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.63, C:0.06, G:0.23, T:0.09
Consensus pattern (13 bp):
AATGGAAGAACAA
Found at i:92645512 original size:25 final size:27
Alignment explanation
Indices: 92645484--92645537 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
92645474 TTTTTGAAAT
92645484 ATTAAATA-TTA-AATTTTAATCACTC
1 ATTAAATATTTATAATTTTAATCACTC
*
92645509 ATTAAATATTTTATAATTTTAGTCACTC
1 ATTAAATA-TTTATAATTTTAATCACTC
92645537 A
1 A
92645538 ACTATCCAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 8 0.32
27 3 0.12
28 14 0.56
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.46
Consensus pattern (27 bp):
ATTAAATATTTATAATTTTAATCACTC
Found at i:92645732 original size:30 final size:31
Alignment explanation
Indices: 92645680--92645747 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
92645670 AATAGTCGCT
* * *
92645680 CAACTATTCAGTTTGTTCTATTTTGGTCACC
1 CAACTATTCACTTTGTTATATTTTAGTCACC
*
92645711 CAACTATT-ACTTTGTTATATTTTAGTCACT
1 CAACTATTCACTTTGTTATATTTTAGTCACC
92645741 CAACTAT
1 CAACTAT
92645748 CCAATTAACG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
30 25 0.76
31 8 0.24
ACGTcount: A:0.25, C:0.21, G:0.09, T:0.46
Consensus pattern (31 bp):
CAACTATTCACTTTGTTATATTTTAGTCACC
Found at i:92647567 original size:24 final size:25
Alignment explanation
Indices: 92647540--92647590 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
92647530 ATTGGCTCGC
92647540 ATGAGCTTCCTGATTATG-ACTTTT
1 ATGAGCTTCCTGATTATGTACTTTT
* *
92647564 ATGAGCTTCCTGTTTATGTGCTTTT
1 ATGAGCTTCCTGATTATGTACTTTT
92647589 AT
1 AT
92647591 AAGCACTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.18, C:0.16, G:0.18, T:0.49
Consensus pattern (25 bp):
ATGAGCTTCCTGATTATGTACTTTT
Found at i:92648416 original size:20 final size:18
Alignment explanation
Indices: 92648391--92648427 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
92648381 ATTGCTAAGT
92648391 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
92648411 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
92648428 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:92650271 original size:50 final size:50
Alignment explanation
Indices: 92650213--92650317 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
92650203 TTTTAATGTG
92650213 AGTA-TGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
92650262 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
92650312 AGTATT
1 AGTATT
92650318 AGTCATGTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 4 0.07
50 51 0.93
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (50 bp):
AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
Found at i:92651861 original size:46 final size:44
Alignment explanation
Indices: 92651757--92651925 Score: 151
Period size: 46 Copynumber: 3.7 Consensus size: 44
92651747 ATGAGATTTG
* * *
92651757 TGTGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCATTGAGA
1 TGTGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCATCGAGA
* * * * *
92651803 CGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA
1 --TGTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCATCGAGA
* * * *
92651849 TGTTAGCCAGTGTCAGACATGTCTAGGAAATGCGTCGG-TTACGAGA
1 TG-T-GCCAGTGTAAGACATGTCTAGGACATGCATCGGCAT-CGAGA
*
92651895 TGTGCTAGTGTAAGACATGTCTAGGACATGC
1 TGTGCCAGTGTAAGACATGTCTAGGACATGC
92651926 GTCAGCACGG
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
44 26 0.26
45 2 0.02
46 48 0.48
47 13 0.13
48 12 0.12
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.24
Consensus pattern (44 bp):
TGTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCATCGAGA
Found at i:92651918 original size:44 final size:46
Alignment explanation
Indices: 92651808--92651928 Score: 158
Period size: 46 Copynumber: 2.7 Consensus size: 46
92651798 TGAGACGAGG
* *
92651808 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCTAGTGTAAGACATGTCTAGGACATGCGTCGGCCTCGAGATGTTA
* * * *
92651854 GCCAGTGTCAGACATGTCTAGGAAATGCGTCGG-TTACGAGATG-T-
1 GCTAGTGTAAGACATGTCTAGGACATGCGTCGGCCT-CGAGATGTTA
92651898 GCTAGTGTAAGACATGTCTAGGACATGCGTC
1 GCTAGTGTAAGACATGTCTAGGACATGCGTC
92651929 AGCACGGTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 28 0.43
45 2 0.03
46 35 0.54
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCGTCGGCCTCGAGATGTTA
Found at i:92654781 original size:20 final size:18
Alignment explanation
Indices: 92654756--92654792 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
92654746 ATTGCTAAGT
92654756 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
92654776 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
92654793 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:92657601 original size:40 final size:42
Alignment explanation
Indices: 92657515--92657602 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
92657505 AGACACGGGC
* * * *
92657515 GTGTGTCTCAGCCATGTGTGGCACACGGCCTGGCACATGGAT
1 GTGTGTCTCAACCATGTGTGGCACACAGCCTAGCACATGGAG
**
92657557 GTGTGTCTCAACTGTGTGTGGCACACAGCCTAGCAC-TGG-G
1 GTGTGTCTCAACCATGTGTGGCACACAGCCTAGCACATGGAG
92657597 GTGTGT
1 GTGTGT
92657603 GGCTAGGCCA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 6 0.15
41 3 0.08
42 31 0.77
ACGTcount: A:0.16, C:0.24, G:0.34, T:0.26
Consensus pattern (42 bp):
GTGTGTCTCAACCATGTGTGGCACACAGCCTAGCACATGGAG
Found at i:92658998 original size:6 final size:6
Alignment explanation
Indices: 92658987--92659034 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
92658977 TATAATTTTT
*
92658987 TATTAA TATTAA TATTAA TATTAA T-TAAAA TAATT-A TATTAA TATTAA
1 TATTAA TATTAA TATTAA TATTAA TAT-TAA T-ATTAA TATTAA TATTAA
92659035 AAAGAATTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
5 4 0.11
6 31 0.86
8 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TATTAA
Found at i:92681034 original size:22 final size:22
Alignment explanation
Indices: 92680986--92681053 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
92680976 AATGTTCTAA
* *
92680986 TTTTTTTATAATAATTTATTAGA
1 TTTTTTTATAAT-ATTTATAAGT
*
92681009 TTTTTTTATAATATTCATAAGT
1 TTTTTTTATAATATTTATAAGT
* *
92681031 TTTTATTATAATTTTTATAAGT
1 TTTTTTTATAATATTTATAAGT
92681053 T
1 T
92681054 AATATCAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
22 27 0.69
23 12 0.31
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (22 bp):
TTTTTTTATAATATTTATAAGT
Found at i:92681121 original size:22 final size:22
Alignment explanation
Indices: 92681025--92681122 Score: 58
Period size: 22 Copynumber: 4.4 Consensus size: 22
92681015 TATAATATTC
*
92681025 ATAAGTTTTTATTAT-AATTTTT
1 ATAA-TTTTTAATATAAATTTTT
* * *
92681047 ATAA--GTTAATATCAATTTTA
1 ATAATTTTTAATATAAATTTTT
* *
92681067 ATACTTTTTAATATTTAATAATCTTT
1 ATAATTTTTAATA--T-A-AATTTTT
* *
92681093 ATGATTTTTAATATATATTTTT
1 ATAATTTTTAATATAAATTTTT
92681115 ATAATTTT
1 ATAATTTT
92681123 ATGATTTTTT
Statistics
Matches: 56, Mismatches: 13, Indels: 14
0.67 0.16 0.17
Matches are distributed among these distances:
19 6 0.11
20 9 0.16
22 22 0.39
23 1 0.02
24 2 0.04
26 16 0.29
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (22 bp):
ATAATTTTTAATATAAATTTTT
Found at i:92681272 original size:20 final size:20
Alignment explanation
Indices: 92681234--92681272 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
92681224 TTTAATATTT
* * *
92681234 ATAAGTTTTTATTATTTTTC
1 ATAAGTTTATATCAATTTTC
92681254 ATAAGTTTATATCAATTTT
1 ATAAGTTTATATCAATTTT
92681273 AATATTTCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
ATAAGTTTATATCAATTTTC
Found at i:92684531 original size:38 final size:37
Alignment explanation
Indices: 92684455--92684536 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
92684445 GAAAATTACT
*
92684455 AATATAT-ATTTAAAAATAATATACAATAAATATTAA
1 AATATATAATTTAAAAATAATATACAATAAATATAAA
* * *
92684491 AATATATAATTTAAAATTAAT-TAATAATAACTTATAAA
1 AATATATAATTTAAAAATAATAT-ACAATAA-ATATAAA
92684529 AATATATA
1 AATATATA
92684537 CAATATCAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
36 8 0.21
37 18 0.46
38 13 0.33
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (37 bp):
AATATATAATTTAAAAATAATATACAATAAATATAAA
Found at i:92687464 original size:21 final size:21
Alignment explanation
Indices: 92687431--92687486 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
92687421 GTTAGGGCAG
*
92687431 CTTGTTGAGTTGGGGTACCCT
1 CTTGCTGAGTTGGGGTACCCT
* *
92687452 CTTGCTGATTTGGGGTAGCCT
1 CTTGCTGAGTTGGGGTACCCT
* *
92687473 GTTGCTAAGTTGGG
1 CTTGCTGAGTTGGG
92687487 ACACCAACTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.11, C:0.16, G:0.36, T:0.38
Consensus pattern (21 bp):
CTTGCTGAGTTGGGGTACCCT
Found at i:92688143 original size:40 final size:40
Alignment explanation
Indices: 92688036--92688143 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
92688026 AAAAAAATAC
*
92688036 TCACTGCATGCATATTAAAAAATAGGT-AACACACCAACAA
1 TCACTGCATGCATATTAAAAAATA-TTCAACACACCAACAA
92688076 TCACTGCATGCATATTAAAAAATATTCAACACACCAACAA
1 TCACTGCATGCATATTAAAAAATATTCAACACACCAACAA
* *
92688116 TCAGTGCATGCATATTAAAAAACATTCA
1 TCACTGCATGCATATTAAAAAATATTCA
92688144 CTAAAATAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
39 1 0.02
40 63 0.98
ACGTcount: A:0.46, C:0.22, G:0.08, T:0.23
Consensus pattern (40 bp):
TCACTGCATGCATATTAAAAAATATTCAACACACCAACAA
Found at i:92689811 original size:15 final size:15
Alignment explanation
Indices: 92689793--92689821 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92689783 ATGCATCACT
92689793 ATCACTACCAGACAC
1 ATCACTACCAGACAC
92689808 ATCACTACCAGACA
1 ATCACTACCAGACA
92689822 TGTTTTCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.38, G:0.07, T:0.14
Consensus pattern (15 bp):
ATCACTACCAGACAC
Found at i:92690199 original size:64 final size:64
Alignment explanation
Indices: 92690129--92690328 Score: 310
Period size: 64 Copynumber: 3.1 Consensus size: 64
92690119 TAGGAGCTTG
* * *
92690129 GATACAAACAATGACATATATACACAATAAACATCAGTTTGATCATGACATTCATACAATGGCA
1 GATACAAACAATGACAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCA
*
92690193 GATACAAACAATGACAGATATACACAATAAACATCAGTTTGATAATGGCATTTATACAATGGCA
1 GATACAAACAATGACAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCA
** * * *
92690257 GATACAAACAATGGTAGATATACATAATAAGCATCAGTTTGATAATGGCATTCGTACAATGGCA
1 GATACAAACAATGACAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCA
*
92690321 AATACAAA
1 GATACAAA
92690329 TAATAAAAAT
Statistics
Matches: 125, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 125 1.00
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.25
Consensus pattern (64 bp):
GATACAAACAATGACAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCA
Found at i:92690513 original size:30 final size:30
Alignment explanation
Indices: 92690449--92690513 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
92690439 AAGTAACCCT
* * * *
92690449 AAATCGAGATCAAAATTAAATTCTAATTCT
1 AAATCGAGATCAAAATGAAATTCGAAATCA
92690479 AAATCGAGATCAAAATCGAAATT-GAAATCA
1 AAATCGAGATCAAAAT-GAAATTCGAAATCA
92690509 AAATC
1 AAATC
92690514 TAAATCAGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.51, C:0.14, G:0.09, T:0.26
Consensus pattern (30 bp):
AAATCGAGATCAAAATGAAATTCGAAATCA
Found at i:92690525 original size:18 final size:17
Alignment explanation
Indices: 92690476--92690526 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
92690466 AAATTCTAAT
92690476 TCTAAATCGAGATCAAAA
1 TCTAAATCGA-ATCAAAA
* *
92690494 TCGAAATTGAAATCAAAA
1 TCTAAATCG-AATCAAAA
92690512 TCTAAATCAGAATCA
1 TCTAAATC-GAATCA
92690527 GTGAGTGCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 25 0.93
19 2 0.07
ACGTcount: A:0.51, C:0.16, G:0.10, T:0.24
Consensus pattern (17 bp):
TCTAAATCGAATCAAAA
Found at i:92690557 original size:6 final size:6
Alignment explanation
Indices: 92690546--92690607 Score: 72
Period size: 6 Copynumber: 10.3 Consensus size: 6
92690536 TCAAAATTGT
* *
92690546 AATCAA AATCAA AAT-AGA AATCGA AATCAA AATCAA AATCAA AATCGA
1 AATCAA AATCAA AATCA-A AATCAA AATCAA AATCAA AATCAA AATCAA
* *
92690594 AATTAA AATTAA AA
1 AATCAA AATCAA AA
92690608 CCGAAATAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
5 1 0.02
6 48 0.98
ACGTcount: A:0.65, C:0.11, G:0.05, T:0.19
Consensus pattern (6 bp):
AATCAA
Found at i:92690559 original size:18 final size:18
Alignment explanation
Indices: 92690536--92690607 Score: 72
Period size: 18 Copynumber: 4.0 Consensus size: 18
92690526 AGTGAGTGCT
*
92690536 TCAAAATTGTAATCAAAA
1 TCAAAATTGAAATCAAAA
* *
92690554 TCAAAATAGAAATCGAAA
1 TCAAAATTGAAATCAAAA
**
92690572 TCAAAATCAAAATCAAAA
1 TCAAAATTGAAATCAAAA
* * *
92690590 TCGAAATTAAAATTAAAA
1 TCAAAATTGAAATCAAAA
92690608 CCGAAATAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22
Consensus pattern (18 bp):
TCAAAATTGAAATCAAAA
Found at i:92690566 original size:24 final size:24
Alignment explanation
Indices: 92690546--92690607 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
92690536 TCAAAATTGT
92690546 AATCAAAATCAAAATAGAAATCGA
1 AATCAAAATCAAAATAGAAATCGA
92690570 AATCAAAATCAAAATCA-AAATCGA
1 AATCAAAATCAAAAT-AGAAATCGA
* *
92690594 AATTAAAATTAAAA
1 AATCAAAATCAAAA
92690608 CCGAAATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 34 0.97
25 1 0.03
ACGTcount: A:0.65, C:0.11, G:0.05, T:0.19
Consensus pattern (24 bp):
AATCAAAATCAAAATAGAAATCGA
Found at i:92690612 original size:18 final size:18
Alignment explanation
Indices: 92690575--92690614 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
92690565 ATCGAAATCA
*
92690575 AAATCAAAATCAAAATCG
1 AAATCAAAATCAAAACCG
* *
92690593 AAATTAAAATTAAAACCG
1 AAATCAAAATCAAAACCG
92690611 AAAT
1 AAAT
92690615 AAACCTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.12, G:0.05, T:0.20
Consensus pattern (18 bp):
AAATCAAAATCAAAACCG
Found at i:92693540 original size:105 final size:108
Alignment explanation
Indices: 92693417--92693668 Score: 343
Period size: 113 Copynumber: 2.3 Consensus size: 108
92693407 TTTATGTTGA
* * *
92693417 TTTTAATTTATTTTAAAGTTATTTTGTTAGTAA-CT-ATTA-TAAATTGTTTGTTTAGTTTAATG
1 TTTTAATTTATTTAAAAGTTATTTTGTTAGTAATCTGATTAGTAAATTATTTATTTAGTTTAATG
92693479 TTTATTGTGATTTGTTAGGTTATGAATGTAAAT-TTTTATTAAT
66 TTTATTGTGATTTGTTAGGTTATGAATGT-AATCTTTTATTAAT
* * *
92693522 TTTTAATTTATTTAAAAGTTATTTTATTAGTAATTTTTGTGATTAGGTTAATTATTTATTTAGTT
1 TTTTAATTTATTTAAAAGTTATTTTGTTAGTAA----TCTGATTA-GTAAATTATTTATTTAGTT
*
92693587 TAATGTTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTATTATT
61 TAATGTTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTATTAAT
92693635 TTTTAATTTATTTTAAAA-TTATTTTGTTAGTAAT
1 TTTTAATTTA-TTTAAAAGTTATTTTGTTAGTAAT
92693669 TTTTGTGATT
Statistics
Matches: 129, Mismatches: 8, Indels: 16
0.84 0.05 0.10
Matches are distributed among these distances:
105 31 0.24
109 1 0.01
110 1 0.01
111 4 0.03
112 3 0.02
113 82 0.64
114 7 0.05
ACGTcount: A:0.29, C:0.01, G:0.12, T:0.58
Consensus pattern (108 bp):
TTTTAATTTATTTAAAAGTTATTTTGTTAGTAATCTGATTAGTAAATTATTTATTTAGTTTAATG
TTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTATTAAT
Found at i:92693602 original size:113 final size:113
Alignment explanation
Indices: 92693458--92693700 Score: 418
Period size: 113 Copynumber: 2.2 Consensus size: 113
92693448 AACTATTATA
*
92693458 AATTGTTTGTTTAGTTTAATGTTTATTGTGATTTGTTAGGTTATGAATGTAAAT-TTTTATTAAT
1 AATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTAGGTTATGAATGT-AATCTTTTATTAAT
92693522 TTTTAATTTA-TTTAAAAGTTATTTTATTAGTAATTTTTGTGATTAGGTT
65 TTTTAATTTATTTTAAAA-TTATTTTATTAGTAATTTTTGTGATTAGGTT
* *
92693571 AATTATTTATTTAGTTTAATGTTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTATTATTT
1 AATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTATTAATT
*
92693636 TTTAATTTATTTTAAAATTATTTTGTTAGTAATTTTTGTGATTAGGTT
66 TTTAATTTATTTTAAAATTATTTTATTAGTAATTTTTGTGATTAGGTT
92693684 AATTATTTGTTTAGTTT
1 AATTATTTGTTTAGTTT
92693701 CACAAGATTC
Statistics
Matches: 123, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
112 3 0.02
113 113 0.92
114 7 0.06
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (113 bp):
AATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTATTAATT
TTTAATTTATTTTAAAATTATTTTATTAGTAATTTTTGTGATTAGGTT
Found at i:92695911 original size:40 final size:40
Alignment explanation
Indices: 92695855--92696072 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
92695845 CGGATGATAA
* *
92695855 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
92695895 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
92695935 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
92695975 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
92696015 CCGGGCTAAGTCCCGAAGGTATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
92696055 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
92696073 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:92698838 original size:13 final size:13
Alignment explanation
Indices: 92698822--92698846 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92698812 CTTTTCCCCC
92698822 TTTCTTTCTTTTG
1 TTTCTTTCTTTTG
92698835 TTTCTTTCTTTT
1 TTTCTTTCTTTT
92698847 TCTCCCCTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.80
Consensus pattern (13 bp):
TTTCTTTCTTTTG
Found at i:92701015 original size:46 final size:46
Alignment explanation
Indices: 92700752--92701015 Score: 343
Period size: 46 Copynumber: 5.7 Consensus size: 46
92700742 TGTCATAGTG
* * * * *
92700752 TCTTTCAACTATGGTCTTACTCCTTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTAC-ACATTTCATATCAGGTTGCCATGGTA
** * *
92700798 TCTTTCAACCATGGTCTTATTC-TTTGCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTT-CATATCAGGTTGCCATGGTA
** * *
92700844 TCTTTCAACCATGGTCTTATTCATTTCTTATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
92700890 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCACGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* * *
92700936 CCTTTCAACCATGATCTTACACATTTCATATCAGGTTGCCACGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
92700982 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
92701016 AGAGTACACT
Statistics
Matches: 200, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
44 3 0.01
45 2 0.01
46 192 0.96
47 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:92703163 original size:11 final size:11
Alignment explanation
Indices: 92703147--92703208 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
92703137 ATTTATATAC
92703147 TAATAA-AATAA
1 TAATAATAA-AA
92703158 TAATAATAAAA
1 TAATAATAAAA
92703169 TAATAATAAAA
1 TAATAATAAAA
* *
92703180 TATCTTATTAAAA
1 TA--ATAATAAAA
*
92703193 TATTAATAAAA
1 TAATAATAAAA
92703204 TAATA
1 TAATA
92703209 TTTATCTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
11 33 0.75
12 2 0.05
13 9 0.20
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:92703166 original size:14 final size:14
Alignment explanation
Indices: 92703147--92703177 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
92703137 ATTTATATAC
92703147 TAATAAAATAATAA
1 TAATAAAATAATAA
92703161 TAATAAAATAATAA
1 TAATAAAATAATAA
92703175 TAA
1 TAA
92703178 AATATCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
TAATAAAATAATAA
Found at i:92703499 original size:30 final size:31
Alignment explanation
Indices: 92703443--92703501 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
92703433 CACCCTTAAA
* * *
92703443 ATATTTACACTATTGATCCTTCAAATTTTTT
1 ATATTTACACTATTAACCCCTCAAATTTTTT
92703474 ATATTTACACT-TTAACCCCTCAAATTTT
1 ATATTTACACTATTAACCCCTCAAATTTT
92703502 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.31, C:0.20, G:0.02, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAACCCCTCAAATTTTTT
Found at i:92703509 original size:30 final size:31
Alignment explanation
Indices: 92703443--92703511 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
92703433 CACCCTTAAA
* * * *
92703443 ATATTTACACTATTGATCCTTCAAATTTTTT
1 ATATTTACACTATTAACCCCTCAAATTTTTG
92703474 ATATTTACACT-TTAACCCCTCAAA-TTTTG
1 ATATTTACACTATTAACCCCTCAAATTTTTG
92703503 AGTATTTAC
1 A-TATTTAC
92703512 TCTTGTGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.15
30 17 0.52
31 11 0.33
ACGTcount: A:0.30, C:0.19, G:0.04, T:0.46
Consensus pattern (31 bp):
ATATTTACACTATTAACCCCTCAAATTTTTG
Found at i:92705895 original size:24 final size:24
Alignment explanation
Indices: 92705868--92705919 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
92705858 AATCAAAGTC
* *
92705868 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
* *
92705892 AAATATATTATACTCATAAATACT
1 AAATAAATTATACTAATAAATACT
92705916 AAAT
1 AAAT
92705920 CTTCTATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:92708051 original size:50 final size:49
Alignment explanation
Indices: 92707996--92708098 Score: 129
Period size: 49 Copynumber: 2.1 Consensus size: 49
92707986 ATTTATATTT
*
92707996 TTAAAATATTATAAAAAAATT-T-AATTAATTAATTTTGAGATCTAAATAAG
1 TTAAAAT-TT-TAAAAAAATTCTAAAATAA-TAATTTTGAGATCTAAATAAG
** *
92708046 TTAAAATTTTAAAAATTTTCTAAAATAATAATTTTGGGATCTAAATAAG
1 TTAAAATTTTAAAAAAATTCTAAAATAATAATTTTGAGATCTAAATAAG
92708095 TTAA
1 TTAA
92708099 TTGGTTATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
48 8 0.17
49 27 0.57
50 12 0.26
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.41
Consensus pattern (49 bp):
TTAAAATTTTAAAAAAATTCTAAAATAATAATTTTGAGATCTAAATAAG
Found at i:92708268 original size:40 final size:40
Alignment explanation
Indices: 92708223--92708300 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
92708213 AGATTACATG
*
92708223 TTTAACTTTTTAGTTGTAAGGACCATTGTAGATAGACGTT
1 TTTAACTTTTTAGTTATAAGGACCATTGTAGATAGACGTT
92708263 TTTAACTTTTTAGTTATAAGGACCATTGTAGATAGACG
1 TTTAACTTTTTAGTTATAAGGACCATTGTAGATAGACG
92708301 GTGTGTTTAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.41
Consensus pattern (40 bp):
TTTAACTTTTTAGTTATAAGGACCATTGTAGATAGACGTT
Found at i:92710543 original size:16 final size:16
Alignment explanation
Indices: 92710510--92710543 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
92710500 ACCTCATGTT
* *
92710510 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
92710526 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
92710542 AA
1 AA
92710544 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:92713369 original size:21 final size:21
Alignment explanation
Indices: 92713343--92713383 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
92713333 AGACGAGCAA
* *
92713343 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
92713364 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
92713384 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:92715322 original size:16 final size:16
Alignment explanation
Indices: 92715289--92715322 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
92715279 GGAGATTGTT
* *
92715289 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
92715305 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
92715321 AA
1 AA
92715323 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:92724022 original size:10 final size:10
Alignment explanation
Indices: 92724007--92724072 Score: 53
Period size: 10 Copynumber: 6.2 Consensus size: 10
92723997 TGTTGGTTAA
92724007 ATATTAAATT
1 ATATTAAATT
92724017 ATATTATTAGATCAT
1 ATATTA--A-AT--T
*
92724032 ATTTTAAATT
1 ATATTAAATT
92724042 ATA-TAAATT
1 ATATTAAATT
*
92724051 ATATTATATT
1 ATATTAAATT
*
92724061 ATATTATATT
1 ATATTAAATT
92724071 AT
1 AT
92724073 TATAAATAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
9 9 0.19
10 26 0.55
12 3 0.06
13 3 0.06
15 6 0.13
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (10 bp):
ATATTAAATT
Found at i:92724058 original size:5 final size:5
Alignment explanation
Indices: 92724039--92724072 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
92724029 CATATTTTAA
*
92724039 ATTAT A-TAA ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
92724073 TATAAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 23 0.88
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
ATTAT
Found at i:92724068 original size:15 final size:14
Alignment explanation
Indices: 92724039--92724079 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
92724029 CATATTTTAA
92724039 ATTATATAAATTAT
1 ATTATATAAATTAT
*
92724053 ATTATATTATATTAT
1 ATTATA-TAAATTAT
92724068 ATTATTATAAAT
1 ATTA-TATAAAT
92724080 AAACTAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 6 0.26
15 15 0.65
16 2 0.09
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
ATTATATAAATTAT
Found at i:92725834 original size:38 final size:38
Alignment explanation
Indices: 92725792--92725867 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
92725782 ACTGGGTACC
*
92725792 ACTTTACTTTG-GCTAGGCCGATGAGACACTGGGTGTCA
1 ACTTTACTTTGAACTA-GCCGATGAGACACTGGGTGTCA
* * * *
92725830 ACTTTGCTTTGAACTATCTGATGAGGCACTGGGTGTCA
1 ACTTTACTTTGAACTAGCCGATGAGACACTGGGTGTCA
92725868 TTCTGGTGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 29 0.91
39 3 0.09
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (38 bp):
ACTTTACTTTGAACTAGCCGATGAGACACTGGGTGTCA
Found at i:92730223 original size:5 final size:5
Alignment explanation
Indices: 92730213--92730238 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
92730203 GGTCCACAAC
92730213 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
92730239 AGTCCATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:92734465 original size:78 final size:78
Alignment explanation
Indices: 92734331--92734487 Score: 215
Period size: 78 Copynumber: 2.0 Consensus size: 78
92734321 ATGCAAGTTT
* * * * *
92734331 CGAGTGTTGCTGTCTTACCAAAGGAAGCTAAGCCAAATAAGATAGAATCACCATTGCGAATTCAG
1 CGAGTGTCGCTGCCTTACCAAAGGAAGCTAAGCCAAATAAGATAGAATCACAATTGCAAATTCAC
92734396 TCCTCATTAACCC
66 TCCTCATTAACCC
* * * *
92734409 CGAGTGTCGCTGCCTTATCAATGGAAGCTAAGCCAATTAAGTTAGAATCACAATTGCAAATTCAC
1 CGAGTGTCGCTGCCTTACCAAAGGAAGCTAAGCCAAATAAGATAGAATCACAATTGCAAATTCAC
**
92734474 TCCTTGTTAACCC
66 TCCTCATTAACCC
92734487 C
1 C
92734488 TTGACTAATA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 68 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (78 bp):
CGAGTGTCGCTGCCTTACCAAAGGAAGCTAAGCCAAATAAGATAGAATCACAATTGCAAATTCAC
TCCTCATTAACCC
Found at i:92734674 original size:34 final size:34
Alignment explanation
Indices: 92734631--92734698 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
92734621 TTAAATGTAG
92734631 AACATTTGGGTTTTGCCCAAAGCAGATCGAGATT
1 AACATTTGGGTTTTGCCCAAAGCAGATCGAGATT
92734665 AACATTTGGGTTTTGCCCAAAGCAGATCGAGATT
1 AACATTTGGGTTTTGCCCAAAGCAGATCGAGATT
92734699 GAATTTCAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (34 bp):
AACATTTGGGTTTTGCCCAAAGCAGATCGAGATT
Found at i:92734714 original size:34 final size:34
Alignment explanation
Indices: 92734642--92734714 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
92734632 ACATTTGGGT
* **
92734642 TTTGCCCAAAGCAGATCGAGATTAACATTTGGGT
1 TTTGCCCAAAGCAGATCGAGATTAACATTTAGAA
*
92734676 TTTGCCCAAAGCAGATCGAGATTGA-ATTTCAGAA
1 TTTGCCCAAAGCAGATCGAGATTAACATTT-AGAA
92734710 TTTGC
1 TTTGC
92734715 ATGCTCGTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 4 0.12
34 30 0.88
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (34 bp):
TTTGCCCAAAGCAGATCGAGATTAACATTTAGAA
Found at i:92753304 original size:14 final size:14
Alignment explanation
Indices: 92753284--92753332 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
92753274 TTGGGTTTAG
92753284 GGTTTAAGACTT-GA
1 GGTTTAAGA-TTCGA
*
92753298 TGTTTAAGATTCGA
1 GGTTTAAGATTCGA
* *
92753312 GGTTTAAGGTTTGA
1 GGTTTAAGATTCGA
92753326 GGTTTAA
1 GGTTTAA
92753333 TGCACAAGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 2 0.07
14 28 0.93
ACGTcount: A:0.27, C:0.04, G:0.29, T:0.41
Consensus pattern (14 bp):
GGTTTAAGATTCGA
Found at i:92755914 original size:28 final size:28
Alignment explanation
Indices: 92755882--92755938 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
92755872 CCCATTTATG
92755882 AGGTAAAATCTCTCATTCATTATACAAA
1 AGGTAAAATCTCTCATTCATTATACAAA
*
92755910 AGGTAAAATCTCTCATTTATTATACAAA
1 AGGTAAAATCTCTCATTCATTATACAAA
92755938 A
1 A
92755939 TTTAATATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (28 bp):
AGGTAAAATCTCTCATTCATTATACAAA
Found at i:92758992 original size:15 final size:16
Alignment explanation
Indices: 92758972--92759005 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
92758962 ATGTTGAACC
*
92758972 ATTAACTGGA-GATTT
1 ATTAACTGCACGATTT
92758987 ATTAACTGCACGATTT
1 ATTAACTGCACGATTT
92759003 ATT
1 ATT
92759006 GATTGTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (16 bp):
ATTAACTGCACGATTT
Found at i:92763230 original size:134 final size:133
Alignment explanation
Indices: 92762965--92763350 Score: 497
Period size: 134 Copynumber: 2.9 Consensus size: 133
92762955 TCATTCATTC
* * * * *
92762965 AAAAATTCTTC-AAAACCAAGACGAGATTTGATATTTGGCAATCCGCGGAATCGTGCCCTAACGT
1 AAAAATTCTTCTAAAACGAAGACGAAATTCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGT
* * * ** * *
92763029 GTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTCCATTCATGTCT
66 GTTGGGTTGCAATTTCGCGTTTGCTTAAAATAATCGAATATCCCTTCAAAATTTCACCCACGCCT
92763094 TTT
131 TTT
**
92763097 AAAAATTCTCTCTAAAACGAAGACGAAATTCGATATTTGGCAATTCGCGGAATAGTGCATTAACG
1 AAAAATTCT-TCTAAAACGAAGACGAAATTCGATATTTGGCAATTCGCGGAATAGTGCCCTAACG
* *
92763162 TGTTGGGTTGCAATTTCGCGTTTACTTAAAATAATCGAATATCCCTTCAAGATTTCACCCACGCC
65 TGTTGGGTTGCAATTTCGCGTTTGCTTAAAATAATCGAATATCCCTTCAAAATTTCACCCACGCC
92763227 TTTT
130 TTTT
** ** * * * *
92763231 AAAAATTCTT-TAAAACGAAGGTGATGTGCGATATTTGGCAATTCGCAGAATTGTGCCCTAACAT
1 AAAAATTCTTCTAAAACGAAGACGAAATTCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGT
* * * *
92763295 GTTGGGTTGCAATTTCTCGGTTGCTTAAAATGATCAAATATCCCTTCAAAATTTCA
66 GTTGGGTTGCAATTTCGCGTTTGCTTAAAATAATCGAATATCCCTTCAAAATTTCA
92763351 TTCATGTCTC
Statistics
Matches: 220, Mismatches: 32, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
132 103 0.47
133 3 0.01
134 114 0.52
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (133 bp):
AAAAATTCTTCTAAAACGAAGACGAAATTCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGT
GTTGGGTTGCAATTTCGCGTTTGCTTAAAATAATCGAATATCCCTTCAAAATTTCACCCACGCCT
TTT
Found at i:92763366 original size:132 final size:132
Alignment explanation
Indices: 92762965--92763380 Score: 517
Period size: 132 Copynumber: 3.1 Consensus size: 132
92762955 TCATTCATTC
* * * ** * *
92762965 AAAAATTCTTCAAAACCAAGACGAGATTTGATATTTGGCAATCCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTTAAAACGAAGACGAAATGCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGTG
* * *
92763030 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTCCATTCATGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTTAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTCTT
92763095 TT
131 TT
* **
92763097 AAAAATTCTCTCTAAAACGAAGACGAAATTCGATATTTGGCAATTCGCGGAATAGTGCATTAACG
1 AAAAATTCT-T-TAAAACGAAGACGAAATGCGATATTTGGCAATTCGCGGAATAGTGCCCTAACG
* * ** * *
92763162 TGTTGGGTTGCAATTTCGCGTTTACTTAAAATAATCGAATATCCCTTCAAGATTTCACCCACGCC
64 TGTTGGGTTGCAATTTCGCGTTTGCTTAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTC
92763227 TTTT
129 TTTT
** ** * * *
92763231 AAAAATTCTTTAAAACGAAGGTGATGTGCGATATTTGGCAATTCGCAGAATTGTGCCCTAACATG
1 AAAAATTCTTTAAAACGAAGACGAAATGCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGTG
* * * * *
92763296 TTGGGTTGCAATTTCTCGGTTGCTTAAAATGATCAAATATCCCTTCAAAATTTCATTCATGTCTC
66 TTGGGTTGCAATTTCGCGTTTGCTTAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTCTT
*
92763361 CT
131 TT
*
92763363 AAAAATTATTTAAAACGA
1 AAAAATTCTTTAAAACGA
92763381 GGGCAACATT
Statistics
Matches: 242, Mismatches: 40, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
132 126 0.52
133 2 0.01
134 114 0.47
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (132 bp):
AAAAATTCTTTAAAACGAAGACGAAATGCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTTAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTCTT
TT
Found at i:92763743 original size:130 final size:129
Alignment explanation
Indices: 92763501--92763743 Score: 324
Period size: 130 Copynumber: 1.9 Consensus size: 129
92763491 ATTAAAAACA
* **
92763501 CTTTAAAACGAAGACGATGTTCAATGTTTGGCGATTTGAGAATCGTGCCCTACCGTGCTAGGTTG
1 CTTTAAAACGAAGACAATGTTCAATGTTTGGCGATTTGAGAATCGAACCCTACCGTGCTAGGTTG
* * * * *
92763566 CGCTTTTTCATTGGTCCGAAACAATTGCAGATCCCTTCGAAATTTCACTCACATTTTCTAAAAT
66 CGCTTTTTCATTGGTCCCAAACAATCGAACATCCCTCCGAAATTTCACTCACATTTTCTAAAAT
* * * *
92763630 CTTTCAAAATGAAGACAATGTTCAATGTTTGGTGATTTGAGAATCGAACCCTATCGTGCTGGGTT
1 CTTT-AAAACGAAGACAATGTTCAATGTTTGGCGATTTGAGAATCGAACCCTACCGTGCTAGGTT
* * * **
92763695 GCGCTTTTTCATTTGTCCCAAATAATCGAACATCTCTCCGGGATTTCAC
65 GCGCTTTTTCATTGGTCCCAAACAATCGAACATCCCTCCGAAATTTCAC
92763744 ACGTATTTTC
Statistics
Matches: 96, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
129 4 0.04
130 92 0.96
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (129 bp):
CTTTAAAACGAAGACAATGTTCAATGTTTGGCGATTTGAGAATCGAACCCTACCGTGCTAGGTTG
CGCTTTTTCATTGGTCCCAAACAATCGAACATCCCTCCGAAATTTCACTCACATTTTCTAAAAT
Found at i:92772928 original size:11 final size:11
Alignment explanation
Indices: 92772912--92772936 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
92772902 ACACCCAAGG
92772912 TTACTAAACTA
1 TTACTAAACTA
92772923 TTACTAAACTA
1 TTACTAAACTA
92772934 TTA
1 TTA
92772937 GTAAGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (11 bp):
TTACTAAACTA
Found at i:92773435 original size:30 final size:30
Alignment explanation
Indices: 92773395--92773495 Score: 132
Period size: 30 Copynumber: 3.4 Consensus size: 30
92773385 TTAAAAATAA
* * *
92773395 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCTTAAAC-TTTCATT
*
92773425 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
* *
92773455 AAATTTCACTTAGACCCTTAAACTTTCATT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
92773485 AAATTTCATTT
1 AAATTTCATTT
92773496 CAATCCTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
29 4 0.06
30 59 0.94
ACGTcount: A:0.30, C:0.22, G:0.04, T:0.45
Consensus pattern (30 bp):
AAATTTCATTTTGACCCTTAAACTTTCATT
Found at i:92774077 original size:3 final size:3
Alignment explanation
Indices: 92774071--92774133 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
92774061 AGCAGCAAAA
* *
92774071 AAG AAG AAG AAAG AAG CAG AA- AA- AAG AAG AAG AAAG AAG CAG AA-
1 AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG
*
92774115 AAA AAG AAG AAG AAAG AAG
1 AAG AAG AAG AAG -AAG AAG
92774134 CAGCCCACTT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
2 6 0.12
3 35 0.70
4 9 0.18
ACGTcount: A:0.70, C:0.03, G:0.27, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:92774083 original size:10 final size:10
Alignment explanation
Indices: 92774070--92774133 Score: 64
Period size: 10 Copynumber: 6.7 Consensus size: 10
92774060 AAGCAGCAAA
92774070 AAAGAAGAAG
1 AAAGAAGAAG
*
92774080 AAAGAAGCAG
1 AAAGAAGAAG
*
92774090 AAAAAAGAAG
1 AAAGAAGAAG
92774100 -AAGAAAGAAG
1 AAAG-AAGAAG
*
92774110 -CAGAA-AA-
1 AAAGAAGAAG
92774117 AAAGAAGAAG
1 AAAGAAGAAG
92774127 AAAGAAG
1 AAAGAAG
92774134 CAGCCCACTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
8 6 0.14
9 6 0.14
10 32 0.73
ACGTcount: A:0.70, C:0.03, G:0.27, T:0.00
Consensus pattern (10 bp):
AAAGAAGAAG
Found at i:92774094 original size:47 final size:47
Alignment explanation
Indices: 92774043--92774136 Score: 138
Period size: 47 Copynumber: 2.0 Consensus size: 47
92774033 CCAGCCCAAA
*
92774043 AAAAAACAAAGCAA-AAA-AAGCAGCAAAAAAGAAGAAGAAAGAAGCAG
1 AAAAAA-AAAG-AAGAAAGAAGCAGAAAAAAAGAAGAAGAAAGAAGCAG
*
92774090 AAAAAAGAAGAAGAAAGAAGCAGAAAAAAAGAAGAAGAAAGAAGCAG
1 AAAAAAAAAGAAGAAAGAAGCAGAAAAAAAGAAGAAGAAAGAAGCAG
92774137 CCCACTTTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
45 2 0.05
46 6 0.14
47 35 0.81
ACGTcount: A:0.70, C:0.07, G:0.22, T:0.00
Consensus pattern (47 bp):
AAAAAAAAAGAAGAAAGAAGCAGAAAAAAAGAAGAAGAAAGAAGCAG
Found at i:92774882 original size:16 final size:16
Alignment explanation
Indices: 92774834--92774882 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
92774824 TTTCTTTCTA
*
92774834 AAAAAATCGTGTTTTC
1 AAAAATTCGTGTTTTC
92774850 AAAAATTTCCGTG-TTTC
1 AAAAA-TT-CGTGTTTTC
92774867 AAAAATTCGTGTTTTC
1 AAAAATTCGTGTTTTC
92774883 GTGTTTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 4 0.14
16 11 0.38
17 10 0.34
18 4 0.14
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (16 bp):
AAAAATTCGTGTTTTC
Found at i:92774906 original size:20 final size:19
Alignment explanation
Indices: 92774881--92774918 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
92774871 ATTCGTGTTT
*
92774881 TCGTGTTTTTAAAAAAAATC
1 TCGTG-TTTCAAAAAAAATC
92774901 TCGTGTTTCAAAAAAAAT
1 TCGTGTTTCAAAAAAAAT
92774919 AAAAATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (19 bp):
TCGTGTTTCAAAAAAAATC
Found at i:92774928 original size:9 final size:9
Alignment explanation
Indices: 92774910--92774959 Score: 68
Period size: 9 Copynumber: 5.7 Consensus size: 9
92774900 CTCGTGTTTC
*
92774910 AAAAAAAAT
1 AAAAATAAT
92774919 AAAAATAAT
1 AAAAATAAT
92774928 -AAAATAAT
1 AAAAATAAT
92774936 AAAAATAAT
1 AAAAATAAT
92774945 AAAAAATAA-
1 -AAAAATAAT
92774954 AAAAAT
1 AAAAAT
92774960 TCTCGTGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
8 14 0.37
9 16 0.42
10 8 0.21
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAAATAAT
Found at i:92774956 original size:8 final size:8
Alignment explanation
Indices: 92774911--92774959 Score: 64
Period size: 8 Copynumber: 6.0 Consensus size: 8
92774901 TCGTGTTTCA
92774911 AAAAAAAT
1 AAAAAAAT
92774919 AAAAATAAT
1 AAAAA-AAT
*
92774928 AAAATAAT
1 AAAAAAAT
92774936 AAAAATAAT
1 AAAAA-AAT
92774945 -AAAAAAT
1 AAAAAAAT
92774952 AAAAAAAT
1 AAAAAAAT
92774960 TCTCGTGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
7 3 0.08
8 23 0.64
9 10 0.28
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (8 bp):
AAAAAAAT
Found at i:92774957 original size:17 final size:16
Alignment explanation
Indices: 92774912--92774956 Score: 81
Period size: 17 Copynumber: 2.8 Consensus size: 16
92774902 CGTGTTTCAA
92774912 AAAAAATAAAAATAAT
1 AAAAAATAAAAATAAT
92774928 AAAATAATAAAAATAAT
1 AAAA-AATAAAAATAAT
92774945 AAAAAATAAAAA
1 AAAAAATAAAAA
92774957 AATTCTCGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 12 0.43
17 16 0.57
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAATAAAAATAAT
Found at i:92775044 original size:18 final size:18
Alignment explanation
Indices: 92775023--92775461 Score: 183
Period size: 18 Copynumber: 25.0 Consensus size: 18
92775013 AAATTTTGTG
92775023 TTTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
92775041 TTTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
92775059 TCTTT-GTGTTTTCAGAAA
1 T-TTTCGTGTTTTCAAAAA
* * *
92775077 TTCTGGCG-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
**
92775094 TTTTCGTGTTTAAAAAAAAAA
1 TTTTCGTGTTT---TCAAAAA
* *
92775115 TTTACGTGTTTTCACAAA
1 TTTTCGTGTTTTCAAAAA
*
92775133 TTTTCGTG-TTTCACAAA
1 TTTTCGTGTTTTCAAAAA
*
92775150 TTCTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
* * *
92775168 -CTCCAGTG-TTTC-AAAG
1 TTTTC-GTGTTTTCAAAAA
* *
92775184 TTTCCATGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
* * **
92775202 TTCTCGCGTTTAAAAAAA
1 TTTTCGTGTTTTCAAAAA
**
92775220 AATTCGTG-TTTCAAAATA
1 TTTTCGTGTTTTCAAAA-A
* **
92775238 TTCTCG-CATTTC---AA
1 TTTTCGTGTTTTCAAAAA
**
92775252 TTTT--TGTTTT-TTAAA
1 TTTTCGTGTTTTCAAAAA
92775267 ---TCGTG-TTTCAAAAAA
1 TTTTCGTGTTTTC-AAAAA
* *
92775282 ATGTCGTGTTTT-AAAAA
1 TTTTCGTGTTTTCAAAAA
*
92775299 TTTTCGTG-TTTCTAAAA
1 TTTTCGTGTTTTCAAAAA
* *
92775316 TTTCCCTGTTTT-AAAAA
1 TTTTCGTGTTTTCAAAAA
**
92775333 TTCCCGTG-TTTCAAAAAAAAAA
1 TTTTCGTGTTTTC-----AAAAA
* *
92775355 ATGTCGTGTTTT-AAGAAA
1 TTTTCGTGTTTTCAA-AAA
* *
92775373 ATTTCGTTTTTTTCTAAAAA
1 TTTTCG-TGTTTTC-AAAAA
*
92775393 TTTTCGTG-TTTCTAAAA
1 TTTTCGTGTTTTCAAAAA
*
92775410 TTTTCGTG-TTT-ACAAA
1 TTTTCGTGTTTTCAAAAA
*
92775426 TTCTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
* *
92775444 TTCTCGTGTTTTTAAAAA
1 TTTTCGTGTTTTCAAAAA
92775462 AAAAACTTTC
Statistics
Matches: 316, Mismatches: 65, Indels: 80
0.69 0.14 0.17
Matches are distributed among these distances:
12 1 0.00
13 6 0.02
14 6 0.02
15 6 0.02
16 21 0.07
17 100 0.32
18 126 0.40
19 12 0.04
20 8 0.03
21 17 0.05
22 10 0.03
23 3 0.01
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.44
Consensus pattern (18 bp):
TTTTCGTGTTTTCAAAAA
Found at i:92775104 original size:17 final size:17
Alignment explanation
Indices: 92775023--92775454 Score: 168
Period size: 17 Copynumber: 24.6 Consensus size: 17
92775013 AAATTTTGTG
92775023 TTTTCGTGTTTTCAAAAA
1 TTTTCGTG-TTTCAAAAA
92775041 TTTTCGTGTTTTCAAAAA
1 TTTTCGTG-TTTCAAAAA
*
92775059 TCTTT-GTGTTTTCAGAAA
1 T-TTTCGTG-TTTCAAAAA
* * *
92775077 TTCTGGCGTTTCAAAAA
1 TTTTCGTGTTTCAAAAA
*
92775094 TTTTCGTGTTTAAAAAAAAAA
1 TTTTCGTGTTT----CAAAAA
* *
92775115 TTTACGTGTTTTCACAAA
1 TTTTCGTG-TTTCAAAAA
*
92775133 TTTTCGTGTTTCACAAA
1 TTTTCGTGTTTCAAAAA
*
92775150 TTCTCGTGTTTTCAAAAA
1 TTTTCGTG-TTTCAAAAA
* * *
92775168 -CTCCAGTGTTTC-AAAG
1 TTTTC-GTGTTTCAAAAA
* *
92775184 TTTCCATGTTTTCAAAAA
1 TTTTCGTG-TTTCAAAAA
* * *
92775202 TTCTCGCGTTTAAAAAAA
1 TTTTCGTGTTT-CAAAAA
**
92775220 AATTCGTGTTTCAAAATA
1 TTTTCGTGTTTCAAAA-A
* **
92775238 TTCTCGCATTTC---AA
1 TTTTCGTGTTTCAAAAA
***
92775252 TTTT--TGTTTTTTAAA
1 TTTTCGTGTTTCAAAAA
92775267 ---TCGTGTTTCAAAAAA
1 TTTTCGTGTTTC-AAAAA
* * *
92775282 ATGTCGTGTTTTAAAAA
1 TTTTCGTGTTTCAAAAA
*
92775299 TTTTCGTGTTTCTAAAA
1 TTTTCGTGTTTCAAAAA
* * *
92775316 TTTCCCTGTTTTAAAAA
1 TTTTCGTGTTTCAAAAA
**
92775333 TTCCCGTGTTTCAAAAAAAAAA
1 TTTTCGTGTTTC-----AAAAA
* * *
92775355 ATGTCGTGTTTTAAGAAA
1 TTTTCGTGTTTCAA-AAA
* *
92775373 ATTTCGTTTTTTTCTAAAAA
1 TTTTCG--TGTTTC-AAAAA
*
92775393 TTTTCGTGTTTCTAAAA
1 TTTTCGTGTTTCAAAAA
*
92775410 TTTTCGTGTTT-ACAAA
1 TTTTCGTGTTTCAAAAA
*
92775426 TTCTCGTGTTTTCAAAAA
1 TTTTCGTG-TTTCAAAAA
*
92775444 TTCTCGTGTTT
1 TTTTCGTGTTT
92775455 TTAAAAAAAA
Statistics
Matches: 311, Mismatches: 69, Indels: 69
0.69 0.15 0.15
Matches are distributed among these distances:
12 4 0.01
14 9 0.03
15 6 0.02
16 15 0.05
17 116 0.37
18 116 0.37
19 3 0.01
20 12 0.04
21 14 0.05
22 16 0.05
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.45
Consensus pattern (17 bp):
TTTTCGTGTTTCAAAAA
Found at i:92775144 original size:56 final size:53
Alignment explanation
Indices: 92775023--92775230 Score: 152
Period size: 56 Copynumber: 3.9 Consensus size: 53
92775013 AAATTTTGTG
** ** *
92775023 TTTTCGTGTTTTCAAAAATTTTCGTGTTTTCAAAAATCTTTGTGTTTTCAGAAA
1 TTTTCGTG-TTTCAAAAATTTTCGTGTTTAAAAAAAAATTTGTGTTTTCACAAA
* * *
92775077 TTCTGGCGTTTCAAAAATTTTCGTGTTTAAAAAAAAAATTTACGTGTTTTCACAAA
1 TTTTCGTGTTTCAAAAATTTTCGTGTTT-AAAAAAAAATTT--GTGTTTTCACAAA
* * ** * ** *
92775133 TTTTCGTGTTTCACAAATTCTCGTGTTT-TCAAAAACTCCAGTG-TTTCA-AAG
1 TTTTCGTGTTTCAAAAATTTTCGTGTTTAAAAAAAAAT-TTGTGTTTTCACAAA
* * * * *
92775184 TTTCCATGTTTTCAAAAATTCTCGCGTTTAAAAAAAAATTCGTGTTT
1 TTTTCGTG-TTTCAAAAATTTTCGTGTTTAAAAAAAAATTTGTGTTT
92775231 CAAAATATTC
Statistics
Matches: 119, Mismatches: 28, Indels: 15
0.73 0.17 0.09
Matches are distributed among these distances:
51 8 0.07
52 26 0.22
53 31 0.26
54 19 0.16
56 35 0.29
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.43
Consensus pattern (53 bp):
TTTTCGTGTTTCAAAAATTTTCGTGTTTAAAAAAAAATTTGTGTTTTCACAAA
Found at i:92775177 original size:74 final size:74
Alignment explanation
Indices: 92775036--92775178 Score: 175
Period size: 74 Copynumber: 1.9 Consensus size: 74
92775026 TCGTGTTTTC
* * * * *
92775036 AAAAATTTTCGTGTTTTCAAAAATCTTTGTGTTTTCAGAAATTCTGGCGTTTCAAAAATTTTCGT
1 AAAAATTTACGTGTTTTCAAAAATCTTTGTGTTTTCACAAATTCTCGCGTTTCAAAAATCTCCGT
92775101 GTTTAAAAA
66 GTTTAAAAA
* *
92775110 AAAAATTTACGTGTTTTCACAAAT-TTTCGTG-TTTCACAAATTCTCGTGTTTTCAAAAA-CTCC
1 AAAAATTTACGTGTTTTCAAAAATCTTT-GTGTTTTCACAAATTCTCGCG-TTTCAAAAATCTCC
92775172 AGTGTTT
64 -GTGTTT
92775179 CAAAGTTTCC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
73 19 0.32
74 40 0.68
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.43
Consensus pattern (74 bp):
AAAAATTTACGTGTTTTCAAAAATCTTTGTGTTTTCACAAATTCTCGCGTTTCAAAAATCTCCGT
GTTTAAAAA
Found at i:92775476 original size:94 final size:90
Alignment explanation
Indices: 92775267--92775463 Score: 215
Period size: 94 Copynumber: 2.2 Consensus size: 90
92775257 GTTTTTTAAA
* * *
92775267 TCGTGTTTCAAAAAAATGTCG--TGTTT-TAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTA
1 TCGTGTTTTAAAAAAATTTCGTTTTTTTCTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTA
*
92775329 AAAATTCCCGTGTTTCAAAAAAAAAAATG
66 AAAATTCCCGTGTTTC----AAAAAAATC
* * *
92775358 TCGTGTTTTAAGAAAATTTCGTTTTTTTCTAAAAATTTTCGTGTTTCTAAAATTTTCGTG-TTTA
1 TCGTGTTTTAAAAAAATTTCGTTTTTTTCTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTA
* * *
92775422 CAAATTCTCGTGTTTTC-AAAAATTC
66 AAAATTCCCGTG-TTTCAAAAAAATC
92775447 TCGTGTTTTTAAAAAAA
1 TCGTG-TTTTAAAAAAA
92775464 AAACTTTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
89 11 0.12
90 10 0.11
91 18 0.20
93 18 0.20
94 33 0.37
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (90 bp):
TCGTGTTTTAAAAAAATTTCGTTTTTTTCTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTA
AAAATTCCCGTGTTTCAAAAAAATC
Found at i:92803485 original size:128 final size:122
Alignment explanation
Indices: 92803341--92803768 Score: 421
Period size: 129 Copynumber: 3.4 Consensus size: 122
92803331 GAGTTGATCC
92803341 TAATTTCTGTTTTTTCAAAAATCAACTCATATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCC
1 TAATTTCTG-TTTTTC-AAAATCAACTC--ATATTGC-AGAAGTGAGTTGAGCCTCGGGCACGCC
92803406 AATTTGTGGGTATTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGA-GTGAGTTAAGCCTTT
61 AA--TGT-GGTATTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTT
* * *
92803470 TAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG-C--T
1 TAATTTCTGTTTTTCAAAATCAACTCATATTGC-AGAAGTGAGTTGAGCCTC-GGGCACGCCAAT
* * * ** *
92803532 GATGGTAATTTCAATTTCTGTTATTTTTCAAAAATCAACTC-TATTGCGAGAGGTGAGTTGAGCC
64 G-TGGT-ATTTTAGTTTATG----TTTT---AAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
92803596 TTT
120 TTT
*
92803599 TAATTTCTG-TTTTCAAAAATCAACTCATATTGCAGAAGTGAGTTGAGCCTAGGGGCACGCCAA-
1 TAATTTCTGTTTTTC-AAAATCAACTCATATTGCAGAAGTGAGTTGAGCCT-CGGGCACGCCAAT
92803662 --GGTATTTTTAGTTTATGTTTTTAAATTGA--CATAATTGCGAAGAGGTGAGTTAAGCCTTT
64 GTGGTA-TTTTAGTTTATG-TTTTAAATTGACTCAT-ATTGCG-AGAGGTGAGTTAAGCCTTT
* *
92803721 TAATTT-AGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGGTTGAG
1 TAATTTCTGTTTTTCAAAATCAACTCATATTGC-AGAAGTGA-GTTGAG
92803769 GCCTTCAGGA
Statistics
Matches: 254, Mismatches: 22, Indels: 52
0.77 0.07 0.16
Matches are distributed among these distances:
119 1 0.00
120 1 0.00
121 35 0.14
122 47 0.19
123 6 0.02
124 5 0.02
125 25 0.10
126 11 0.04
127 23 0.09
128 43 0.17
129 57 0.22
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.38
Consensus pattern (122 bp):
TAATTTCTGTTTTTCAAAATCAACTCATATTGCAGAAGTGAGTTGAGCCTCGGGCACGCCAATGT
GGTATTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTT
Found at i:92803734 original size:122 final size:119
Alignment explanation
Indices: 92803351--92803768 Score: 407
Period size: 122 Copynumber: 3.3 Consensus size: 119
92803341 TAATTTCTGT
* *
92803351 TTTTTCAAAAATCAACTCATATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCCAATTTGTGGG
1 TTTTTC-AAAATCAACTC--ATATTGCTAGAAGTGAGTTGAGCCTAGGGCACGCCAA------GG
92803416 TATTTTAGTTTATG-TTTTAAATTGAC-TCATATTGCGAGA-GTGAGTTAAGCCTTTTAATTTTT
57 TATTTTAGTTTATGTTTTTAAATTGACATCA-ATTGCGAGAGGTGAGTTAAGCCTTTTAA--TTT
92803478 G
119 G
* * * * *
92803479 TTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGATGGTAATTTC
1 TTTTTCAAAATCAACTCATATTGCTAGAAGTGAGTTGAGCCT-AGGGCACGC-CAAGGT-ATTTT
* * * * * * *
92803544 AATTTCTGTTATTTTTCAAAAATCA-ACTCTATTGCGAGAGGTGAGTTGAGCCTTTTAATTTC
63 AGTTTATG---TTTTT--AAATTGACA-TCAATTGCGAGAGGTGAGTTAAGCCTTTTAATTTG
92803606 TGTTTTCAAAAATCAACTCATATTGC-AGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTT
1 T-TTTTC-AAAATCAACTCATATTGCTAGAAGTGAGTTGAGCCTA-GGGCACGCCAAGGTA-TTT
92803670 TAGTTTATGTTTTTAAATTGACAT-AATTGCGAAGAGGTGAGTTAAGCCTTTTAATTTAG
62 TAGTTTATGTTTTTAAATTGACATCAATTGCG-AGAGGTGAGTTAAGCCTTTTAATTT-G
*
92803729 TTTTTCAAAATCAACTCATATTGCTAGAGGTGAGGTTGAG
1 TTTTTCAAAATCAACTCATATTGCTAGAAGTGA-GTTGAG
92803769 GCCTTCAGGA
Statistics
Matches: 242, Mismatches: 27, Indels: 47
0.77 0.09 0.15
Matches are distributed among these distances:
121 27 0.11
122 52 0.21
123 8 0.03
124 5 0.02
125 23 0.10
126 12 0.05
127 30 0.12
128 48 0.20
129 37 0.15
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (119 bp):
TTTTTCAAAATCAACTCATATTGCTAGAAGTGAGTTGAGCCTAGGGCACGCCAAGGTATTTTAGT
TTATGTTTTTAAATTGACATCAATTGCGAGAGGTGAGTTAAGCCTTTTAATTTG
Found at i:92804081 original size:71 final size:73
Alignment explanation
Indices: 92803730--92804249 Score: 537
Period size: 71 Copynumber: 7.1 Consensus size: 73
92803720 TTAATTTAGT
* ** *
92803730 TTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGGTTGAGGCCTTCAGGACACGCTGAAGGTAAT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGA-GTTGA-GCC-TCAAGACACGCTG-AGGTAA-
*
92803794 TTTTAA-TTCTG-
61 TTTCAATTTCTGC
* * * *
92803805 TTGTTAAAAAAAAATCAACTCATTATTGCCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGTTT
1 TT-TT---CAAAATTCAACTCA-TATTG-CGAGAAATGAGTTGAGCCTCAAGACACGCTGAG-GT
92803870 AATTTCAATTTCTG-
59 AATTTCAATTTCTGC
* * *
92803884 TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCGCTCAGGACACGCTGAGGTATTTTC
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGC-CTCAAGACACGCTGAGGTAATTTC
92803949 AATTTCTGC
65 AATTTCTGC
*
92803958 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-A-ACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
92804021 ATTTCTG-
66 ATTTCTGC
* * * *
92804028 TTTTCAAAATTCAACTCATATTGTGAG-AATGAGTTGAGCCTCAAGACAAGTTGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
92804092 ATTTCTGC
66 ATTTCTGC
** *
92804100 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG-CTC-AGACATACTTA-GT-ATTGTC
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT-TC
*
92804161 AATTT-TGTA
65 AATTTCTG-C
* * ** * *
92804170 TGTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGT-ATTTC
1 T-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
* *
92804234 CATTTCTGT
65 AATTTCTGC
92804243 TTTTCAA
1 TTTTCAA
92804250 TTTATGTTTT
Statistics
Matches: 389, Mismatches: 34, Indels: 47
0.83 0.07 0.10
Matches are distributed among these distances:
69 19 0.05
70 37 0.10
71 89 0.23
72 38 0.10
73 60 0.15
74 67 0.17
75 13 0.03
76 2 0.01
78 9 0.02
79 27 0.07
80 11 0.03
81 10 0.03
82 7 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (73 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCTGC
Found at i:92804315 original size:85 final size:86
Alignment explanation
Indices: 92804168--92804380 Score: 306
Period size: 85 Copynumber: 2.5 Consensus size: 86
92804158 GTCAATTTTG
* *
92804168 TATG-TTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTA-T
1 TATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
* **
92804231 TTCCATTTCTGTTTTTCAATT
66 TTCAATTTCTACTTTTCAATT
* * *
92804252 TATGTTTTCAAAAATCAATTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATT
1 TATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
92804317 TTCAATTTCTACTTTTCAATT
66 TTCAATTTCTACTTTTCAATT
* * *
92804338 TCTGTTTTC-AAAATCAACTCATATTGCGACAGGTGAGCTGAGC
1 TATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
92804381 TTTAATTTTG
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
84 4 0.04
85 83 0.73
86 27 0.24
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (86 bp):
TATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
TTCAATTTCTACTTTTCAATT
Found at i:92804476 original size:54 final size:53
Alignment explanation
Indices: 92804347--92804546 Score: 217
Period size: 54 Copynumber: 3.7 Consensus size: 53
92804337 TTCTGTTTTC
* * * * *
92804347 AAAATCAACTCATATTGCGACAGGTGAGCTGAGCTTTAATTTTGTTTTTCAAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT--TTCTATTTTTCAAAAA
*
92804402 AAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTCTATTTTTCAAAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTCTATTTTTC-AAAAA
* ***
92804456 AAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTTTTGCAAATTCTGTT--TTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT-C-TATT-T-TTCAAAAA
*
92804510 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
92804547 GGCTCACGTG
Statistics
Matches: 128, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
53 25 0.20
54 50 0.39
55 50 0.39
56 1 0.01
57 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.33
Consensus pattern (53 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTCTATTTTTCAAAAA
Found at i:92804870 original size:29 final size:30
Alignment explanation
Indices: 92804815--92804912 Score: 114
Period size: 30 Copynumber: 3.3 Consensus size: 30
92804805 TAAAAAATAA
*
92804815 AAATTGCATTTTGACCC-TAAACTTT-TCCT
1 AAATTTCATTTTGACCCTTAAACTTTCT-CT
*
92804844 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCTTAAACTTTCTCT
* *
92804874 AAATTTCACTTAGACCCTTAAACTTTCAT-T
1 AAATTTCATTTTGACCCTTAAACTTTC-TCT
92804904 AAA-TTCATT
1 AAATTTCATT
92804913 CAATCCTAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
29 21 0.34
30 38 0.62
31 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTTGACCCTTAAACTTTCTCT
Found at i:92805483 original size:3 final size:3
Alignment explanation
Indices: 92805477--92805538 Score: 54
Period size: 3 Copynumber: 20.0 Consensus size: 3
92805467 AAGCAGCAAA
* * * *
92805477 AAG AAG AAG AAAG AAG CAG AAA AAG AAG AAG AAAG AAG CAG AA- AAA
1 AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG
92805523 AAG AAG AAG AAAG AAG
1 AAG AAG AAG -AAG AAG
92805539 CAGCCCACTT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
2 2 0.04
3 37 0.77
4 9 0.19
ACGTcount: A:0.69, C:0.03, G:0.27, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:92805527 original size:14 final size:14
Alignment explanation
Indices: 92805474--92805534 Score: 59
Period size: 16 Copynumber: 4.1 Consensus size: 14
92805464 AAAAAGCAGC
92805474 AAAAAGAAGAAGAA
1 AAAAAGAAGAAGAA
* *
92805488 AGAAGCAGAAAAAGAA
1 A-AA-AAGAAGAAGAA
*
92805504 GAAGAAAGAAGCAGAA
1 -AA-AAAGAAGAAGAA
92805520 AAAAAGAAGAAGAA
1 AAAAAGAAGAAGAA
92805534 A
1 A
92805535 GAAGCAGCCC
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
14 13 0.35
15 4 0.11
16 18 0.49
17 2 0.05
ACGTcount: A:0.72, C:0.03, G:0.25, T:0.00
Consensus pattern (14 bp):
AAAAAGAAGAAGAA
Found at i:92805535 original size:10 final size:10
Alignment explanation
Indices: 92805476--92805538 Score: 64
Period size: 10 Copynumber: 6.7 Consensus size: 10
92805466 AAAGCAGCAA
92805476 AAAGAAGAAG
1 AAAGAAGAAG
*
92805486 AAAGAAGCAG
1 AAAGAAGAAG
92805496 AAA-AAGAAG
1 AAAGAAGAAG
92805505 -AAGAAAGAAG
1 AAAG-AAGAAG
*
92805515 -CAGAA-AA-
1 AAAGAAGAAG
92805522 AAAGAAGAAG
1 AAAGAAGAAG
92805532 AAAGAAG
1 AAAGAAG
92805539 CAGCCCACTT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
8 8 0.18
9 9 0.20
10 27 0.61
ACGTcount: A:0.70, C:0.03, G:0.27, T:0.00
Consensus pattern (10 bp):
AAAGAAGAAG
Found at i:92806283 original size:16 final size:16
Alignment explanation
Indices: 92806235--92806283 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
92806225 TTTCTTTCTA
*
92806235 AAAAAATCGTGTTTTC
1 AAAAATTCGTGTTTTC
92806251 AAAAATTTCCGTG-TTTC
1 AAAAA-TT-CGTGTTTTC
92806268 AAAAATTCGTGTTTTC
1 AAAAATTCGTGTTTTC
92806284 GTGTTTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 4 0.14
16 11 0.38
17 10 0.34
18 4 0.14
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (16 bp):
AAAAATTCGTGTTTTC
Found at i:92806307 original size:20 final size:19
Alignment explanation
Indices: 92806282--92806319 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
92806272 ATTCGTGTTT
*
92806282 TCGTGTTTTTAAAAAAAATC
1 TCGTG-TTTCAAAAAAAATC
92806302 TCGTGTTTCAAAAAAAAT
1 TCGTGTTTCAAAAAAAAT
92806320 AAAAATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (19 bp):
TCGTGTTTCAAAAAAAATC
Found at i:92806325 original size:6 final size:6
Alignment explanation
Indices: 92806314--92806355 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
92806304 GTGTTTCAAA
*
92806314 AAAAAT AAAAAT AATAAAT AATAAA- AATAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AA-AAAT AA-AAAT AAAAAT AAAAAT AAAAA
92806356 AATTCTCGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 2 0.06
6 20 0.62
7 10 0.31
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:92806329 original size:9 final size:9
Alignment explanation
Indices: 92806311--92806358 Score: 66
Period size: 9 Copynumber: 5.7 Consensus size: 9
92806301 CTCGTGTTTC
*
92806311 AAAAAAAAT
1 AAAAATAAT
92806320 AAAAATAAT
1 AAAAATAAT
92806329 --AAATAAT
1 AAAAATAAT
92806336 AAAAATAAT
1 AAAAATAAT
92806345 AAAAATAA-
1 AAAAATAAT
92806353 AAAAAT
1 AAAAAT
92806359 TCTCGTGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
7 7 0.19
8 6 0.17
9 23 0.64
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAAATAAT
Found at i:92806356 original size:16 final size:15
Alignment explanation
Indices: 92806314--92806355 Score: 75
Period size: 16 Copynumber: 2.7 Consensus size: 15
92806304 GTGTTTCAAA
92806314 AAAAATAAAAATAAT
1 AAAAATAAAAATAAT
92806329 AAATAATAAAAATAAT
1 AAA-AATAAAAATAAT
92806345 AAAAATAAAAA
1 AAAAATAAAAA
92806356 AATTCTCGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 11 0.42
16 15 0.58
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAAATAAAAATAAT
Found at i:92806443 original size:18 final size:18
Alignment explanation
Indices: 92806422--92806840 Score: 138
Period size: 18 Copynumber: 24.0 Consensus size: 18
92806412 AAATTTTGTG
92806422 TTTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
92806440 TTTTCGTATTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
92806458 TCTTT-GTGTTTTCAGAAA
1 T-TTTCGTGTTTTCAAAAA
* * * *
92806476 TTCTGGCG-TGTC-AAAA
1 TTTTCGTGTTTTCAAAAA
**
92806492 TTTTCGTGTTTAAAAAAAAAA
1 TTTTCGTGTTT---TCAAAAA
* *
92806513 TTTACGTGTTTTCACAAA
1 TTTTCGTGTTTTCAAAAA
*
92806531 TTTTCGTG-TTTCACAAA
1 TTTTCGTGTTTTCAAAAA
*
92806548 TTCTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
* *
92806566 -CTCCAGTG-TTTC-AAAA
1 TTTTC-GTGTTTTCAAAAA
* * *
92806582 TTCTCGCG-TTTAAAAAA
1 TTTTCGTGTTTTCAAAAA
**
92806599 AATTCGTG-TTTCAAAATA
1 TTTTCGTGTTTTCAAAA-A
* **
92806617 TTCTCG-CATTTC---AA
1 TTTTCGTGTTTTCAAAAA
**
92806631 TTTT--TGTTTT-TTAAA
1 TTTTCGTGTTTTCAAAAA
92806646 ---TCGTG-TTTCAAAAAA
1 TTTTCGTGTTTTC-AAAAA
* * *
92806661 ATGTCTTGTTTT-AAAAA
1 TTTTCGTGTTTTCAAAAA
*
92806678 TTTTCGTG-TTTCTAAAA
1 TTTTCGTGTTTTCAAAAA
* *
92806695 TTTCCCTGTTTT-AAAAA
1 TTTTCGTGTTTTCAAAAA
**
92806712 TTCCCGTG-TTTCAAAAAAAAAA
1 TTTTCGTGTTTTC-----AAAAA
* *
92806734 ATGTCGTGTTTT-AAGAAA
1 TTTTCGTGTTTTCAA-AAA
* *
92806752 ATTTCGTTTTTTTCTAAAAA
1 TTTTCG-TGTTTTC-AAAAA
*
92806772 TTTTCGTG-TTTCTAAAA
1 TTTTCGTGTTTTCAAAAA
*
92806789 TTTTCGTG-TTT-ACAAA
1 TTTTCGTGTTTTCAAAAA
*
92806805 TTCTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
* *
92806823 TTCTCGTGTTTTTAAAAA
1 TTTTCGTGTTTTCAAAAA
92806841 AAAAAACTTT
Statistics
Matches: 296, Mismatches: 65, Indels: 80
0.67 0.15 0.18
Matches are distributed among these distances:
12 1 0.00
13 6 0.02
14 6 0.02
15 6 0.02
16 33 0.11
17 93 0.31
18 102 0.34
19 12 0.04
20 8 0.03
21 16 0.05
22 10 0.03
23 3 0.01
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (18 bp):
TTTTCGTGTTTTCAAAAA
Found at i:92806544 original size:17 final size:17
Alignment explanation
Indices: 92806510--92806558 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
92806500 TTTAAAAAAA
*
92806510 AAATTTACGTGTTTTCAC
1 AAATTTTCGTG-TTTCAC
92806528 AAATTTTCGTGTTTCAC
1 AAATTTTCGTGTTTCAC
*
92806545 AAATTCTCGTGTTT
1 AAATTTTCGTGTTT
92806559 TCAAAAACTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 19 0.66
18 10 0.34
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.47
Consensus pattern (17 bp):
AAATTTTCGTGTTTCAC
Found at i:92806581 original size:90 final size:91
Alignment explanation
Indices: 92806426--92806600 Score: 219
Period size: 90 Copynumber: 1.9 Consensus size: 91
92806416 TTTGTGTTTT
* * * * **
92806426 CGTGTTTTCAAAAATTTTCGTATTTTCAAAAATCTTTGTGTTTTCAGAAATTCTGGCGTGTCAAA
1 CGTGTTTTCAAAAATTTTCGTAGTTTCAAAAATCTTCGTGTTTTCAAAAACTCCAGCGTGTCAAA
* *
92806491 ATTTTCGTGTTTAAAAAAAAAATTTA
66 ATTCTCGCGTTTAAAAAAAAAATTTA
* * * *
92806517 CGTGTTTTCACAAATTTTCGT-GTTTCACAAAT-TCTCGTGTTTTCAAAAACTCCAGTGTTTCAA
1 CGTGTTTTCAAAAATTTTCGTAGTTTCAAAAATCT-TCGTGTTTTCAAAAACTCCAGCGTGTCAA
92806580 AATTCTCGCGTTTAAAAAAAA
65 AATTCTCGCGTTTAAAAAAAA
92806601 TTCGTGTTTC
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
89 1 0.01
90 50 0.70
91 20 0.28
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.41
Consensus pattern (91 bp):
CGTGTTTTCAAAAATTTTCGTAGTTTCAAAAATCTTCGTGTTTTCAAAAACTCCAGCGTGTCAAA
ATTCTCGCGTTTAAAAAAAAAATTTA
Found at i:92806592 original size:16 final size:16
Alignment explanation
Indices: 92806517--92806615 Score: 67
Period size: 17 Copynumber: 5.8 Consensus size: 16
92806507 AAAAAATTTA
*
92806517 CGTGTTTTCACAAATTTT
1 CGTG-TTTCA-AAATTCT
92806535 CGTGTTTCACAAATTCT
1 CGTGTTTCA-AAATTCT
*
92806552 CGTGTTTTCAAAA-ACT
1 CGTG-TTTCAAAATTCT
92806568 CCAGTGTTTCAAAATTCT
1 -C-GTGTTTCAAAATTCT
* * *
92806586 CGCGTTTAAAAAAAAT-T
1 CGTGTTT--CAAAATTCT
92806603 CGTGTTTCAAAAT
1 CGTGTTTCAAAAT
92806616 ATTCTCGCAT
Statistics
Matches: 66, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
15 4 0.06
16 7 0.11
17 36 0.55
18 19 0.29
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (16 bp):
CGTGTTTCAAAATTCT
Found at i:92806608 original size:33 final size:33
Alignment explanation
Indices: 92806533--92806615 Score: 103
Period size: 34 Copynumber: 2.5 Consensus size: 33
92806523 TTCACAAATT
* ** *
92806533 TTCGTGTTTCACAAATTCTCGTGTTTTCAAAAAC
1 TTCGTGTTTCA-AAATTCTCGCGTTTAAAAAAAA
*
92806567 TCCAGTGTTTCAAAATTCTCGCGTTTAAAAAAAA
1 TTC-GTGTTTCAAAATTCTCGCGTTTAAAAAAAA
92806601 TTCGTGTTTCAAAAT
1 TTCGTGTTTCAAAAT
92806616 ATTCTCGCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
33 12 0.29
34 22 0.52
35 8 0.19
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (33 bp):
TTCGTGTTTCAAAATTCTCGCGTTTAAAAAAAA
Found at i:92806687 original size:17 final size:17
Alignment explanation
Indices: 92806667--92806840 Score: 102
Period size: 17 Copynumber: 9.6 Consensus size: 17
92806657 AAAAATGTCT
92806667 TGTTTTAAAAATTTTCG
1 TGTTTTAAAAATTTTCG
* *
92806684 TGTTTCT-AAAATTTCCC
1 TGTTT-TAAAAATTTTCG
**
92806701 TGTTTTAAAAATTCCCG
1 TGTTTTAAAAATTTTCG
* * *
92806718 TGTTTCAAAAAAAAAAATGTCG
1 TGTTT-----TAAAAATTTTCG
*
92806740 TGTTTTAAGAAAATTTCG
1 TGTTTTAA-AAATTTTCG
*
92806758 TTTTTTTCTAAAAATTTTCG
1 --TGTTT-TAAAAATTTTCG
92806778 TGTTTCT-AAAATTTTCG
1 TGTTT-TAAAAATTTTCG
* *
92806795 TG-TTTACAAATTCTCG
1 TGTTTTAAAAATTTTCG
*
92806811 TGTTTTCAAAAATTCTCG
1 TGTTTT-AAAAATTTTCG
92806829 TGTTTTTAAAAA
1 TG-TTTTAAAAA
92806841 AAAAAACTTT
Statistics
Matches: 126, Mismatches: 16, Indels: 29
0.74 0.09 0.17
Matches are distributed among these distances:
15 1 0.01
16 13 0.10
17 48 0.38
18 32 0.25
19 4 0.03
20 12 0.10
21 3 0.02
22 13 0.10
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.46
Consensus pattern (17 bp):
TGTTTTAAAAATTTTCG
Found at i:92810268 original size:20 final size:20
Alignment explanation
Indices: 92810245--92810282 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
92810235 TTTTCGATAA
* *
92810245 ATAAATGGTATTTGGTTTGG
1 ATAAATGGAAATTGGTTTGG
92810265 ATAAATGGAAATTGGTTT
1 ATAAATGGAAATTGGTTT
92810283 CGTAAGTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.42
Consensus pattern (20 bp):
ATAAATGGAAATTGGTTTGG
Found at i:92811187 original size:24 final size:22
Alignment explanation
Indices: 92811145--92811190 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
92811135 TAGTTTTTTT
*
92811145 TATTTTTAATTATTGATTTTAA
1 TATTTTTAATTATTAATTTTAA
92811167 TATTTTTAAATTTATTAATTTTAA
1 TATTTTT-AA-TTATTAATTTTAA
92811191 GTAAGGTGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.33
23 2 0.10
24 12 0.57
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TATTTTTAATTATTAATTTTAA
Found at i:92818154 original size:18 final size:19
Alignment explanation
Indices: 92818133--92818192 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 19
92818123 AATCGGTTAA
*
92818133 TCAGTAAT-ATTCATTTAT
1 TCAGTAATCAGTCATTTAT
92818151 TCAGT-ATCAGTCATTTAT
1 TCAGTAATCAGTCATTTAT
* * *
92818169 TCTGTAA-CAGTAAATTAT
1 TCAGTAATCAGTCATTTAT
92818187 TCAGTA
1 TCAGTA
92818193 GCAGACAGTC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 2 0.06
18 32 0.91
19 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (19 bp):
TCAGTAATCAGTCATTTAT
Found at i:92818333 original size:6 final size:6
Alignment explanation
Indices: 92818324--92818349 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
92818314 CACCGTAAGG
92818324 GTAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GT
92818350 GGCGGTACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:92820533 original size:50 final size:50
Alignment explanation
Indices: 92820458--92820683 Score: 355
Period size: 50 Copynumber: 4.5 Consensus size: 50
92820448 CCATGGCAAC
* *
92820458 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
92820508 AAGTGATAAGTGATAGCTTCGGCTACACTTAT-TGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
92820557 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
92820607 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
92820658 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
92820684 CTGATCAATG
Statistics
Matches: 164, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
49 47 0.29
50 94 0.57
51 23 0.14
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:92820632 original size:99 final size:101
Alignment explanation
Indices: 92820458--92820683 Score: 357
Period size: 99 Copynumber: 2.3 Consensus size: 101
92820448 CCATGGCAAC
* *
92820458 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGAAAGTGATAAGTGATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
* * *
92820523 GCTTCGGCTACACTTAT-TGATCAAGGATAAGT-GA
66 GCTTCAGCTACACTTATCTGATCAAGGACAAATGGA
92820557 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
*
92820622 GCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
66 GCTTCAGCTACACTTATCTGATCAAGGACAAATGGA
* * *
92820658 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
92820684 CTGATCAATG
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
99 79 0.68
100 13 0.11
101 24 0.21
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (101 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
GCTTCAGCTACACTTATCTGATCAAGGACAAATGGA
Done.