Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 285 of 311
Found at i:93134103 original size:13 final size:13
Alignment explanation
Indices: 93134074--93134112 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
93134064 ATAGTAACAA
*
93134074 AAAATATGTATAAT
1 AAAATAT-TAAAAT
93134088 AAAATATTAAAAT
1 AAAATATTAAAAT
*
93134101 AAAATAATAAAA
1 AAAATATTAAAA
93134113 ATAAGGCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 16 0.70
14 7 0.30
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (13 bp):
AAAATATTAAAAT
Found at i:93134218 original size:123 final size:119
Alignment explanation
Indices: 93133951--93134236 Score: 283
Period size: 123 Copynumber: 2.4 Consensus size: 119
93133941 TTGAAATATG
* * *
93133951 AAAAAACGAATACAACAAAAATATTGAAATAAAGTAATAAAAAATAAGACTATGTACAAATATAT
1 AAAAAACAAATACAAC-AAAATATTAAAATAAAGTAAT-AAAAATAAGACTATATACAAATATAT
* * * * *
93134016 ATATATACATATATGATAAAAAGTATACACTATTATATAATATTAATAATAGTAAC
64 ATACATACATACATAATAAAAAGTATACACTATTATATAATAATAATAATAGCAAC
* ** * * * *
93134072 AAAAAATATGTATAATAAAATATTAAAATAAAATAATAAAAATAAGGCTATATA-AATATATATA
1 AAAAAACAAATACAACAAAATATTAAAATAAAGTAATAAAAATAAGACTATATACAA-ATATATA
* * *
93134136 TACATGGAGCGTACATAATAAACA-TATACACTCATATATATAATAATACTGTAAT-GCAA-
65 TACAT--A-CATACATAATAAAAAGTATACACT-AT-TATATAATAATA--ATAATAGCAAC
*
93134195 AAAAAACAAATACAACAAAATATTAAAATGAAGTAATAAAAA
1 AAAAAACAAATACAACAAAATATTAAAATAAAGTAATAAAAA
93134237 ACACTACTGT
Statistics
Matches: 132, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
118 2 0.02
119 26 0.20
120 19 0.14
121 19 0.14
122 13 0.10
123 46 0.35
124 3 0.02
125 4 0.03
ACGTcount: A:0.59, C:0.08, G:0.07, T:0.27
Consensus pattern (119 bp):
AAAAAACAAATACAACAAAATATTAAAATAAAGTAATAAAAATAAGACTATATACAAATATATAT
ACATACATACATAATAAAAAGTATACACTATTATATAATAATAATAATAGCAAC
Found at i:93134284 original size:20 final size:21
Alignment explanation
Indices: 93134251--93134315 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 21
93134241 TACTGTATAT
93134251 ATATATAC-ACATATAATAA-A
1 ATATATACTA-ATATAATAATA
93134271 ATATATACTAATATTAATAATA
1 ATATATACTAATA-TAATAATA
* * *
93134293 A-ATATAATAGTATAATACTA
1 ATATATACTAATATAATAATA
93134313 ATA
1 ATA
93134316 ATAACAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 19 0.50
21 17 0.45
22 2 0.05
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (21 bp):
ATATATACTAATATAATAATA
Found at i:93134315 original size:26 final size:24
Alignment explanation
Indices: 93134263--93134325 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 24
93134253 ATATACACAT
*
93134263 ATAATAAAATATATACTAATATTA
1 ATAATAAAATATATACTAATACTA
93134287 ATAATAAATATAATAGTA-TAATACTA
1 ATAATAAA-AT-ATA-TACTAATACTA
93134313 ATAATAACAATAT
1 ATAATAA-AATAT
93134326 GAAATTAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
24 8 0.24
25 4 0.12
26 19 0.56
27 3 0.09
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.35
Consensus pattern (24 bp):
ATAATAAAATATATACTAATACTA
Found at i:93134421 original size:3 final size:3
Alignment explanation
Indices: 93134402--93134458 Score: 53
Period size: 3 Copynumber: 18.7 Consensus size: 3
93134392 AAACATACAC
* * * *
93134402 TAA TATA TAA AAA TAA TAA TAA TAT TGA TAA TAA TAT TAGA -AA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
93134448 TAA TAA TAA TA
1 TAA TAA TAA TA
93134459 TTTAATAAAG
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
2 1 0.02
3 39 0.91
4 3 0.07
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:93137371 original size:52 final size:53
Alignment explanation
Indices: 93137315--93137467 Score: 231
Period size: 52 Copynumber: 2.9 Consensus size: 53
93137305 ATCACATCAT
* * *
93137315 ACCGACGCCAAAGCCCAGCTATGGTCTTATACTGGAA-CACGTATCACATTGC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACTGGAAGCACATATCACATTGC
*
93137367 ACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAAGCACATATCACATTGT
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACTGGAAGCACATATCACATTGC
* *
93137419 ACTGATGCCATTGCCCAGCTATGGTCTTATACT-GAAGCACATATCACAT
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACTGGAAGCACATATCACAT
93137468 CTTTTCCGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 4 0.04
52 89 0.96
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (53 bp):
ACCGATGCCATAGCCCAGCTATGGTCTTATACTGGAAGCACATATCACATTGC
Found at i:93142516 original size:16 final size:16
Alignment explanation
Indices: 93142495--93142526 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
93142485 TAATGTGTTT
93142495 TGCTGCTGTTGTTTAA
1 TGCTGCTGTTGTTTAA
93142511 TGCTGCTGTTGTTTAA
1 TGCTGCTGTTGTTTAA
93142527 ATGCAGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.25, T:0.50
Consensus pattern (16 bp):
TGCTGCTGTTGTTTAA
Found at i:93142708 original size:45 final size:45
Alignment explanation
Indices: 93142640--93142903 Score: 411
Period size: 45 Copynumber: 5.9 Consensus size: 45
93142630 AAGAGGTGGA
** * * * *
93142640 CAACATCATGCATAATTTGTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
* *
93142685 CAACATCATGCAAAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
93142730 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
93142775 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
*
93142820 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
* * * *
93142865 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
93142904 CCATGGCCGA
Statistics
Matches: 205, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 205 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
Found at i:93146500 original size:16 final size:16
Alignment explanation
Indices: 93146479--93146510 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
93146469 TAATGTGTTT
93146479 TGCTGCTGTTGTTTAA
1 TGCTGCTGTTGTTTAA
93146495 TGCTGCTGTTGTTTAA
1 TGCTGCTGTTGTTTAA
93146511 ATGCAGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.25, T:0.50
Consensus pattern (16 bp):
TGCTGCTGTTGTTTAA
Found at i:93146692 original size:45 final size:45
Alignment explanation
Indices: 93146624--93146797 Score: 249
Period size: 45 Copynumber: 3.9 Consensus size: 45
93146614 AAGAGGTGGA
** *
93146624 CAACATCATGCATAATTTGTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAACAAATTAAGGAAGCATTTGGC
* * *
93146669 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAACAAATTAAGGAAGCATTTGGC
* *
93146714 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAACAAATTAAGGAAGCATTTGGC
* * *
93146759 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAACAAATTAAGGAAGCA
93146798 CCATGGCCGA
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 117 1.00
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.25
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAACAAATTAAGGAAGCATTTGGC
Found at i:93147962 original size:45 final size:45
Alignment explanation
Indices: 93147913--93148086 Score: 249
Period size: 45 Copynumber: 3.9 Consensus size: 45
93147903 TCGGCCATGG
* * *
93147913 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATAAATTATGCATGATGTTGGCCAAA
* *
93147958 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATAAATTATGCATGATGTTGGCCAAA
* *
93148003 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATAAATTATGCATGATGTTGGCCAAA
* * * *
93148048 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATAAATTATGCATGATGTTG
93148087 TCCACCTCTT
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 117 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.40
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATAAATTATGCATGATGTTGGCCAAA
Found at i:93148221 original size:16 final size:16
Alignment explanation
Indices: 93148200--93148231 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
93148190 CATTCTGCAT
93148200 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
93148216 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
93148232 AAACACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12
Consensus pattern (16 bp):
TTAAACAACAGCAGCA
Found at i:93151693 original size:45 final size:45
Alignment explanation
Indices: 93151644--93151817 Score: 249
Period size: 45 Copynumber: 3.9 Consensus size: 45
93151634 TCGGCCATGG
* * *
93151644 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATAAATTATGCATGATGTTGGCCAAA
* *
93151689 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATAAATTATGCATGATGTTGGCCAAA
* *
93151734 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATAAATTATGCATGATGTTGGCCAAA
* * * *
93151779 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATAAATTATGCATGATGTTG
93151818 TCCACCTCTT
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 117 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.40
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATAAATTATGCATGATGTTGGCCAAA
Found at i:93151952 original size:16 final size:16
Alignment explanation
Indices: 93151931--93151962 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
93151921 CATTCTGCAT
93151931 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
93151947 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
93151963 AAACACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12
Consensus pattern (16 bp):
TTAAACAACAGCAGCA
Found at i:93164019 original size:26 final size:24
Alignment explanation
Indices: 93163950--93164019 Score: 61
Period size: 26 Copynumber: 2.7 Consensus size: 24
93163940 TCTAAAATTT
93163950 TAAGTAAAATTATAGTTATTTTATA
1 TAAGTAAAATTATA-TTATTTTATA
* *
93163975 TAAGGAAACATAATAATTATAATTTAT-
1 TAAGTAAA-ATTAT-ATTAT--TTTATA
93164002 TAAAGTAAAATTATATTA
1 T-AAGTAAAATTATATTA
93164020 ATTAAAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
25 7 0.19
26 12 0.33
27 6 0.17
28 11 0.31
ACGTcount: A:0.50, C:0.01, G:0.07, T:0.41
Consensus pattern (24 bp):
TAAGTAAAATTATATTATTTTATA
Found at i:93171351 original size:43 final size:43
Alignment explanation
Indices: 93171290--93171376 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
93171280 ACTAAAACAT
93171290 AAATTAACTAATAATTTAATAATATTAGGTATTGCTTAACTTA
1 AAATTAACTAATAATTTAATAATATTAGGTATTGCTTAACTTA
93171333 AAATTAACTAATAATTTAATAATATTAGGTATTGCTTAACTTA
1 AAATTAACTAATAATTTAATAATATTAGGTATTGCTTAACTTA
93171376 A
1 A
93171377 CTATTAAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (43 bp):
AAATTAACTAATAATTTAATAATATTAGGTATTGCTTAACTTA
Found at i:93173116 original size:19 final size:19
Alignment explanation
Indices: 93173092--93173131 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
93173082 TTATTAAAAT
*
93173092 TTTTTATATTTTTTAT-TAA
1 TTTTTA-ATTATTTATATAA
93173111 TTTTTAATTATTTATATAA
1 TTTTTAATTATTTATATAA
93173130 TT
1 TT
93173132 ATAATTGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTTAATTATTTATATAA
Found at i:93177197 original size:17 final size:16
Alignment explanation
Indices: 93177175--93177209 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
93177165 CCGGGGCCGT
93177175 ATGAAAATAAAAACAAA
1 ATGAAAATAAAAA-AAA
*
93177192 ATGAAAATACAAAAAA
1 ATGAAAATAAAAAAAA
93177208 AT
1 AT
93177210 AAGCCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.74, C:0.06, G:0.06, T:0.14
Consensus pattern (16 bp):
ATGAAAATAAAAAAAA
Found at i:93178979 original size:131 final size:130
Alignment explanation
Indices: 93178756--93179392 Score: 640
Period size: 131 Copynumber: 4.8 Consensus size: 130
93178746 AAAATCCCTT
* * * * **
93178756 AAACGAAGGCAATA-TGCGATATTTGGTAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
1 AAACGAAGGCAATACT-CGGTGTTTGATAATTCG-GGAATCGTGCCCTATCGTGTTGGGTTGTGA
* * * * *
93178820 TTTCCCGTTTGCTT-AAAATAATCAAATATCCCTTCAAGATTTCATTCATGTCTT-CTAAAAATC
64 TTTCTCGTTTG-TTCAAAACAATCGAATATTCCTTCAAGATTTCACTCATGT-TTACTAAAAA-C
93178883 CTTTA
126 CTTTA
* * *
93178888 AAACGAAGGCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATT
1 AAACGAAGGCAATACTCGGTGTTTGATAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
* * * * * * *
93178953 TCTCGTTTGTTCAAAACAATTGAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTTCC
66 TCTCGTTTGTTCAAAACAATCGAATATTCCTTCAAGATTTCACTCATGTTTACTAAAAACCTT-T
93179018 A
130 A
*
93179019 AAACGAAGACAATACTCGGTGTTTGATAATTCGGGAATCGTGCCCTAAT-GTGTTGGGTTGTGAT
1 AAACGAAGGCAATACTCGGTGTTTGATAATTCGGGAATCGTGCCCT-ATCGTGTTGGGTTGTGAT
* * * * *
93179083 TTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTTC
65 TTCTCGTTTGTTCAAAACAATCGAATATTCCTTCAAGATTTCACTCATGTTTACTAAAAACCTT-
*
93179148 CA
129 TA
* **
93179150 AAACAAAAACAATACTCGGTGTTTGATAATTCGGGAATCGTGCCCTAAT-GTGTTGGGTTGTGAT
1 AAACGAAGGCAATACTCGGTGTTTGATAATTCGGGAATCGTGCCCT-ATCGTGTTGGGTTGTGAT
* * * * *
93179214 TTCTTGTTTTTTTCAAAACAATCGAAGATTCCTTCGAA-ATTTCACTCAAGTTTTCTAAAAACCC
65 TTCTCG-TTTGTTCAAAACAATCGAATATTCCTTC-AAGATTTCACTCATGTTTACTAAAAA-CC
93179278 TTTA
127 TTTA
* * ** * ** * * **
93179282 AAACGAAAGAAATGTTCGATGTTTGGCAATTCGGTGAATAGTGCCCTATCGTGCTGGGTTGCAAT
1 AAACGAAGGCAATACTCGGTGTTTGATAATTCGG-GAATCGTGCCCTATCGTGTTGGGTTGTGAT
* * **
93179347 TTCCCGTTTGTTCAAAATAATCGAATATAACTTC-AGAATTTCACTC
65 TTCTCGTTTGTTCAAAACAATCGAATATTCCTTCAAG-ATTTCACTC
93179393 GCATTTTCTA
Statistics
Matches: 435, Mismatches: 58, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
130 9 0.02
131 259 0.60
132 134 0.31
133 33 0.08
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (130 bp):
AAACGAAGGCAATACTCGGTGTTTGATAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
TCTCGTTTGTTCAAAACAATCGAATATTCCTTCAAGATTTCACTCATGTTTACTAAAAACCTTTA
Found at i:93180956 original size:19 final size:19
Alignment explanation
Indices: 93180932--93180975 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
93180922 CCCATGCATT
93180932 TGCATTGCATTGCATCATG
1 TGCATTGCATTGCATCATG
*
93180951 TGCATTGCATTGCATCATT
1 TGCATTGCATTGCATCATG
93180970 TGCATT
1 TGCATT
93180976 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.41
Consensus pattern (19 bp):
TGCATTGCATTGCATCATG
Found at i:93183679 original size:3 final size:3
Alignment explanation
Indices: 93183661--93183707 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
93183651 TTTTAAAAAA
* * *
93183661 AAG AAA AAG AAT AAG AAG AAG AAG AAA AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
93183708 TAAGGAGATC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:93183780 original size:4 final size:4
Alignment explanation
Indices: 93183760--93183793 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
93183750 ATTGAAAAAA
*
93183760 AAAT AAA- AAAT ATAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
93183794 AAGAAGAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:93185149 original size:44 final size:44
Alignment explanation
Indices: 93185128--93185982 Score: 1075
Period size: 44 Copynumber: 19.5 Consensus size: 44
93185118 TTGTTAGAGG
**
93185128 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* **
93185172 GCAGATCGAAGATAACAGATTTGGAGTCTCTGTAGCGGCGGAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
** *
93185216 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAAA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* * **
93185260 GTAGATCGAAGATAACAGATTTGGCGTTTCTGTAGCGGCGGAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* * * **
93185304 ACAGATCGAAGATAACAAATTTGACGTCTCTGTAGCGGCGGAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
** * *** *
93185348 GCAGATCGAAGATAGTAGATTTGGCGTCTTTGTATTGTTAGAGG
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
*
93185392 GCAGATCGAAGATAACAGATTTGGCGTCTTTGTATTGGCGGAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
*
93185436 GCAGATCGAAGATAACAGATTTGGCGTCTCTATATTGGCGGAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* *
93185480 GCAGATTGAATATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* * *
93185524 GCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTC-GAGG
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* *
93185567 GCAGATCGAAGATAACAGATTTGGCGTCTCT-AATTGGCGAAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* * * *
93185610 GCAGATCGAAGATAATAGATTTGGCGTCTATGTATTGGTGGAGG
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* *
93185654 GCAGATCGAAGATAGCAGATTTGGTGTCTCTGTATTGGCGGAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* * * * * *
93185698 GTAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGG
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
*
93185742 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGTGGAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* *
93185786 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGCGGAGG
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* * * * *
93185830 GCAAATCGAAGATAGCAGATTTGGTGTCTCTGTATTGTCGGAGG
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* * * * * ***
93185874 GCAGATCAAAGATAGCAGGTTTGGCATCTCTGTGTTGATAGAGA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
* * * * ** *
93185918 GTAGATCGAAGATGACAGATTTGGCATCTCTGTAGTGGCAAATA
1 GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
*
93185962 GCAGATCGAAAATAACAGATT
1 GCAGATCGAAGATAACAGATT
93185983 GGTGTTCCCG
Statistics
Matches: 708, Mismatches: 101, Indels: 4
0.87 0.12 0.00
Matches are distributed among these distances:
42 5 0.01
43 64 0.09
44 639 0.90
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.26
Consensus pattern (44 bp):
GCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGGCGGAGA
Found at i:93186216 original size:17 final size:16
Alignment explanation
Indices: 93186194--93186228 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
93186184 CCGGGCCCGT
93186194 ATGAAAATAAAAATAAA
1 ATGAAAATAAAAA-AAA
*
93186211 ATGAAAATACAAAAAA
1 ATGAAAATAAAAAAAA
93186227 AT
1 AT
93186229 AAGCCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.17
Consensus pattern (16 bp):
ATGAAAATAAAAAAAA
Found at i:93186483 original size:6 final size:6
Alignment explanation
Indices: 93186474--93186505 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
93186464 GAAAATTGTA
*
93186474 TTTTAT TTTTAT TTTTAT TTTTAT TTTGAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
93186506 CGGCTATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:93187967 original size:42 final size:42
Alignment explanation
Indices: 93187918--93188290 Score: 500
Period size: 42 Copynumber: 8.9 Consensus size: 42
93187908 GTTTACAAAC
* *
93187918 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* *
93187960 AGAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* *
93188002 AGAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
93188044 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
93188086 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG-AA
* * * *
93188128 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGTA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
93188170 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-A
* * * ****
93188212 GAAAACGCCGCTAAAGAACATGTTCTTTAGTGGC-ATTTTTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* * *
93188253 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT
93188291 TTATACAAAA
Statistics
Matches: 300, Mismatches: 26, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
41 36 0.12
42 261 0.87
43 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:93188682 original size:21 final size:21
Alignment explanation
Indices: 93188614--93188684 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
93188604 TTTTGCTCTG
* *
93188614 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
93188635 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
93188656 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
93188677 CTCTGCTT
1 CTCTGCTT
93188685 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:93189534 original size:11 final size:9
Alignment explanation
Indices: 93189486--93189788 Score: 84
Period size: 7 Copynumber: 35.0 Consensus size: 9
93189476 AATTGCAATG
93189486 GTAAGTTAT
1 GTAAGTTAT
93189495 GTAAGTTAT
1 GTAAGTTAT
93189504 GTAAGTTAAAT
1 GTAAGTT--AT
93189515 GT-A-TTAT
1 GTAAGTTAT
93189522 GTAAGTTAAAT
1 GTAAGTT--AT
93189533 GTAAG-T-T
1 GTAAGTTAT
93189540 GTAAGTTAT
1 GTAAGTTAT
*
93189549 -TATGTATTAT
1 GTAAG--TTAT
93189559 GTAAG-T-T
1 GTAAGTTAT
93189566 GTAAGTTAAAT
1 GTAAGTT--AT
*
93189577 GT-A-TTGT
1 GTAAGTTAT
93189584 GTAAG-T-T
1 GTAAGTTAT
93189591 GTAAGTTAAAT
1 GTAAGTT--AT
93189602 GT-A-TTAT
1 GTAAGTTAT
93189609 GTAAG-T-T
1 GTAAGTTAT
93189616 GTAAGTTAT
1 GTAAGTTAT
*
93189625 -TATGTATTAT
1 GTAAG--TTAT
93189635 GTAAG-T-T
1 GTAAGTTAT
93189642 GTAAGTTAT
1 GTAAGTTAT
* *
93189651 -TATGTATTGT
1 GTAAG--TTAT
93189661 GTAAG-T-T
1 GTAAGTTAT
93189668 GTAAGTTAAAT
1 GTAAGTT--AT
93189679 GT-A-TTAT
1 GTAAGTTAT
93189686 GTAAGTTAAAT
1 GTAAGTT--AT
93189697 GT-A-TTAT
1 GTAAGTTAT
93189704 GTAAG-T-T
1 GTAAGTTAT
93189711 GTAAGTTACAT
1 GTAAGTT--AT
93189722 GT-A-TTAT
1 GTAAGTTAT
93189729 GTAAGTTAAAT
1 GTAAGTT--AT
93189740 GT-A-TTAT
1 GTAAGTTAT
93189747 GTAAG-T-T
1 GTAAGTTAT
93189754 GTAAGTTAT
1 GTAAGTTAT
*
93189763 -TATGTATTAT
1 GTAAG--TTAT
93189773 GTAAG-T-T
1 GTAAGTTAT
93189780 GTAAGTTAT
1 GTAAGTTAT
93189789 TATGTATTGT
Statistics
Matches: 224, Mismatches: 10, Indels: 120
0.63 0.03 0.34
Matches are distributed among these distances:
7 81 0.36
8 36 0.16
9 41 0.18
10 23 0.10
11 43 0.19
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:93189565 original size:26 final size:25
Alignment explanation
Indices: 93189531--93189936 Score: 494
Period size: 26 Copynumber: 16.8 Consensus size: 25
93189521 TGTAAGTTAA
93189531 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
*
93189557 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
* *
93189582 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
93189607 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
93189633 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
* *
93189659 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
93189684 ATGTAAG-T-T-A---A-ATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
93189702 ATGTAAGTTGTAAGTTACATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
93189727 ATGTAAG-T-T-A---A-ATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
93189745 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
93189771 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
*
93189797 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
93189823 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
* *
93189849 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
93189874 ATGTCAG-T-T-A---A-ATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
93189892 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
93189917 ATGTAAGTTGTAAGTAATAT
1 ATGTAAGTTGTAAGTTATAT
93189937 AATTATTAAT
Statistics
Matches: 341, Mismatches: 16, Indels: 47
0.84 0.04 0.12
Matches are distributed among these distances:
18 41 0.12
19 6 0.02
20 3 0.01
21 3 0.01
22 3 0.01
23 3 0.01
24 6 0.02
25 111 0.33
26 165 0.48
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (25 bp):
ATGTAAGTTGTAAGTTATATGTATT
Found at i:93189709 original size:43 final size:44
Alignment explanation
Indices: 93189641--93189925 Score: 333
Period size: 43 Copynumber: 6.2 Consensus size: 44
93189631 TTATGTAAGT
* *
93189641 TGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTAAATGTATTA
1 TGTAAGTTATAATGTATTATGTAAGTTGTAAGTTAAATGTATTA
*
93189685 TGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTACATGTATTA
1 TGTAAGTTATAATGTATTATGTAAGTTGTAAGTTAAATGTATTA
*
93189728 TGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATTA
1 TGTAAGTTATAATGTATTATGTAAGTTGTAAGTTA-AATGTATTA
* *
93189772 TGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTATTATGTATTA
1 TGTAAG-T-T-A--TA--ATGTATTATGTAAGTTGTAAGTTA-AATGTATTA
*
93189824 TGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTAAATGTATTA
1 TGTAAG-T-T-A--TA--ATGTATTATGTAAGTTGTAAGTTAAATGTATTA
*
93189875 TGTCAGTTA-AATGTATTATGTAAGTTGTAAGTTAAATGTATTA
1 TGTAAGTTATAATGTATTATGTAAGTTGTAAGTTAAATGTATTA
93189918 TGTAAGTT
1 TGTAAGTT
93189926 GTAAGTAATA
Statistics
Matches: 223, Mismatches: 9, Indels: 19
0.89 0.04 0.08
Matches are distributed among these distances:
43 104 0.47
44 23 0.10
45 2 0.01
46 1 0.00
47 1 0.00
48 1 0.00
49 1 0.00
50 2 0.01
51 13 0.06
52 75 0.34
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (44 bp):
TGTAAGTTATAATGTATTATGTAAGTTGTAAGTTAAATGTATTA
Found at i:93189835 original size:190 final size:189
Alignment explanation
Indices: 93189491--93189944 Score: 388
Period size: 190 Copynumber: 2.4 Consensus size: 189
93189481 CAATGGTAAG
93189491 TTATGTAAGTTATGTAAGTTAAATGTATTATGTAAG-TT-A---A--ATGTAAGTTGTAAGTTAT
1 TTATGTAAG-T-TGTAAGTTAAATGTATTATGTAAGTTTAATGTATTATGTAAGTTGTAAGTTAT
* * *
93189549 TATGTATTATGTAAGTTGTAAGTTAAATGTATTGTGTAAGTTGTAAGTTA-AATGTATTATGTAA
64 AATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAA
* * * *
93189613 GTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGTAA-GT-
129 GTTGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTA-AATGTATTATGTAAGTT-AAATGTA
* * * *
93189674 TAAATGT-ATTATGTAAGTTAAATGTATTATGTAAGTTGTAA-GT-TACATGT-ATTATGTAAGT
1 T-TATGTAAGT-TGTAAGTTAAATGTATTATGTAAGTT-TAATGTAT-TATGTAAGT-TGTAAGT
* *
93189735 TA-AATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATTGT
61 TATAATGTATTATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATTAT
* *
93189799 GTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGTAAGT
125 GTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTA-AATGTA---T-T-A--TGTAAGT
93189864 TAAATGTA
182 TAAATGTA
* * * * *
93189872 TTATGTCAG-T-TAAATGTATTATGTAAGT-TGTAAGTTAAATGTATTATGTAAGTTGTAAGTAA
1 TTATGTAAGTTGTAAGT-TA-AATGT-ATTATGTAAGTTTAATGTATTATGTAAGTTGTAAGT--
93189934 TATAAT-TATTA
61 TATAATGTATTA
93189945 ATAATATTTA
Statistics
Matches: 222, Mismatches: 18, Indels: 46
0.78 0.06 0.16
Matches are distributed among these distances:
182 26 0.12
183 3 0.01
184 5 0.02
185 1 0.00
188 26 0.12
189 36 0.16
190 56 0.25
193 1 0.00
194 1 0.00
195 4 0.02
196 7 0.03
197 39 0.18
198 7 0.03
199 7 0.03
200 3 0.01
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.46
Consensus pattern (189 bp):
TTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTTAATGTATTATGTAAGTTGTAAGTTATAA
TGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
TGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTAAATGTATTATGTAAGTTAAATGTA
Found at i:93189925 original size:18 final size:18
Alignment explanation
Indices: 93189500--93189900 Score: 125
Period size: 18 Copynumber: 21.6 Consensus size: 18
93189490 GTTATGTAAG
93189500 TTATGTAAGTTAAATGTA
1 TTATGTAAGTTAAATGTA
93189518 TTATGTAAGTTAAATGTAA
1 TTATGTAAGTTAAATGT-A
* *
93189537 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTA-AATGTA
*
93189555 TTATGTAAGTTGTAA-GT-
1 TTATGTAAGTT-AAATGTA
* *
93189572 TAAATGT-A-TT--GTGTAA
1 T-TATGTAAGTTAAATGT-A
*
93189588 GT-TGTAAGTTAAATGTA
1 TTATGTAAGTTAAATGTA
*
93189605 TTATGTAAGTTGTAA-GTTA
1 TTATGTAAGTT-AAATG-TA
93189624 TTATGT-A-TT--ATGTAA
1 TTATGTAAGTTAAATGT-A
* *
93189639 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTA-AATGTA
93189657 TTGTGTAAGTTGTAAGTTAAATGTA
1 ---T-T-A--TGTAAGTTAAATGTA
93189682 TTATGTAAGTTAAATGTA
1 TTATGTAAGTTAAATGTA
93189700 TTATGTAAGTTGTAAGTTACATGTA
1 TTATGTAAG-T-T-A---A-ATGTA
93189725 TTATGTAAGTTAAATGTA
1 TTATGTAAGTTAAATGTA
*
93189743 TTATGTAAGTTGTAA-GTTA
1 TTATGTAAGTT-AAATG-TA
93189762 TTATGT-A-TT--ATGTAA
1 TTATGTAAGTTAAATGT-A
* *
93189777 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTA-AATGTA
* *
93189795 TTGTGTAAGTTGTAA-GTTA
1 TTATGTAAGTT-AAATG-TA
93189814 TTATGT-A-TT--ATGTAA
1 TTATGTAAGTTAAATGT-A
* *
93189829 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTA-AATGTA
93189847 TTGTGTAAGTTGTAAGTTAAATGTA
1 ---T-T-A--TGTAAGTTAAATGTA
*
93189872 TTATGTCAGTTAAATGTA
1 TTATGTAAGTTAAATGTA
93189890 TTATGTAAGTT
1 TTATGTAAGTT
93189901 GTAAGTTAAA
Statistics
Matches: 293, Mismatches: 26, Indels: 128
0.66 0.06 0.29
Matches are distributed among these distances:
14 20 0.07
15 13 0.04
16 10 0.03
17 10 0.03
18 119 0.41
19 65 0.22
20 3 0.01
21 3 0.01
22 5 0.02
23 1 0.00
24 2 0.01
25 24 0.08
26 18 0.06
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (18 bp):
TTATGTAAGTTAAATGTA
Found at i:93190192 original size:72 final size:73
Alignment explanation
Indices: 93189934--93190228 Score: 574
Period size: 73 Copynumber: 4.1 Consensus size: 73
93189924 TTGTAAGTAA
93189934 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
93189999 TATTTTTT
66 TATTTTTT
93190007 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
93190072 TATTTTTT
66 TATTTTTT
93190080 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
93190145 TA-TTTTT
66 TATTTTTT
*
93190152 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAGTATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
93190217 TATTTTTT
66 TATTTTTT
93190225 TATA
1 TATA
93190229 TTTTATTTTA
Statistics
Matches: 220, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
72 71 0.32
73 149 0.68
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.51
Consensus pattern (73 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTT
Found at i:93190224 original size:146 final size:146
Alignment explanation
Indices: 93189934--93190228 Score: 574
Period size: 145 Copynumber: 2.0 Consensus size: 146
93189924 TTGTAAGTAA
93189934 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
93189999 TATTTTTTTATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAAT
66 TATTTTTTTATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAAT
93190064 ATTCCACATATTTTTT
131 ATTCCACATATTTTTT
93190080 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
*
93190145 TA-TTTTTTATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAGT
66 TATTTTTTTATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAAT
93190209 ATTCCACATATTTTTT
131 ATTCCACATATTTTTT
93190225 TATA
1 TATA
93190229 TTTTATTTTA
Statistics
Matches: 148, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
145 81 0.55
146 67 0.45
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.51
Consensus pattern (146 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTTTATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAAT
ATTCCACATATTTTTT
Found at i:93190393 original size:13 final size:13
Alignment explanation
Indices: 93190375--93190445 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
93190365 ATTTATAATT
93190375 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
93190388 ATTTAAGTAACAT
1 ATTTAAGTAATAA
93190401 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
93190414 ATTTAAGTAACAT
1 ATTTAAGTAATAA
93190427 ATTTAAGTAATAA
1 ATTTAAGTAATAA
93190440 ATTTAA
1 ATTTAA
93190446 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:93190404 original size:26 final size:26
Alignment explanation
Indices: 93190374--93190445 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
93190364 TATTTATAAT
93190374 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
93190400 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
93190426 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
93190446 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:93190472 original size:17 final size:17
Alignment explanation
Indices: 93190450--93190550 Score: 123
Period size: 17 Copynumber: 5.6 Consensus size: 17
93190440 ATTTAAACAA
93190450 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
93190467 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
93190484 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
93190501 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
93190524 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
93190541 ATTTTAGTAA
1 ATTTTAGTAA
93190551 TAAATTTAAC
Statistics
Matches: 74, Mismatches: 2, Indels: 16
0.80 0.02 0.17
Matches are distributed among these distances:
16 1 0.01
17 58 0.78
23 14 0.19
24 1 0.01
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.46
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:93190496 original size:57 final size:57
Alignment explanation
Indices: 93190417--93190559 Score: 259
Period size: 57 Copynumber: 2.5 Consensus size: 57
93190407 GTAATAAATT
** *
93190417 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
93190474 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
93190531 TAAGTAATGTATTTTAGTAATAAATTTAA
1 TAAGTAATGTATTTTAGTAATAAATTTAA
93190560 CATTCAATCG
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 83 1.00
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (57 bp):
TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
Found at i:93190500 original size:13 final size:13
Alignment explanation
Indices: 93190375--93190557 Score: 81
Period size: 13 Copynumber: 13.3 Consensus size: 13
93190365 ATTTATAATT
*
93190375 ATTTAAGTAATAA
1 ATTTTAGTAATAA
* * *
93190388 ATTTAAGTAACAT
1 ATTTTAGTAATAA
*
93190401 ATTTAAGTAATAA
1 ATTTTAGTAATAA
* * *
93190414 ATTTAAGTAACAT
1 ATTTTAGTAATAA
*
93190427 ATTTAAGTAATAA
1 ATTTTAGTAATAA
*
93190440 A-TTTA--AACAA
1 ATTTTAGTAATAA
93190450 ATTTTAGTAAGTAA
1 ATTTTAGTAA-TAA
93190464 TGTATTTTAGTAAGTAA
1 ---ATTTTAGTAA-TAA
93190481 TGTATTTTAGTAATAA
1 ---ATTTTAGTAATAA
*
93190497 A-TTTA--AACAA
1 ATTTTAGTAATAA
93190507 ATTTTAGTAAGTAA
1 ATTTTAGTAA-TAA
93190521 TGTATTTTAGTAAGTAA
1 ---ATTTTAGTAA-TAA
93190538 TGTATTTTAGTAATAA
1 ---ATTTTAGTAATAA
93190554 ATTT
1 ATTT
93190558 AACATTCAAT
Statistics
Matches: 143, Mismatches: 13, Indels: 28
0.78 0.07 0.15
Matches are distributed among these distances:
10 10 0.07
11 8 0.06
12 7 0.05
13 54 0.38
14 4 0.03
16 6 0.04
17 54 0.38
ACGTcount: A:0.45, C:0.02, G:0.10, T:0.43
Consensus pattern (13 bp):
ATTTTAGTAATAA
Found at i:93191906 original size:11 final size:11
Alignment explanation
Indices: 93191890--93191929 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
93191880 GATGATAATA
93191890 CATTAGTTACC
1 CATTAGTTACC
93191901 CATTAGTTACC
1 CATTAGTTACC
*
93191912 CACTAGTTACC
1 CATTAGTTACC
93191923 CA-TAGTT
1 CATTAGTT
93191930 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:93193019 original size:84 final size:83
Alignment explanation
Indices: 93192912--93193112 Score: 330
Period size: 84 Copynumber: 2.4 Consensus size: 83
93192902 ATTAACACCG
93192912 TTTTGTGGCGTTTTTGGTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTT
1 TTTTGTGGCGTTTTT-G-AAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTT
93192977 TCGTGGTCTGGAATTGCATT
64 TCGTGGTCTGGAATTGCATT
*
93192997 TTTTGTGGCGTTTTTAGAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTT
1 TTTTGTGGCGTTTTT-GAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTT
93193062 CGTGGTCTGGAATTGCATT
65 CGTGGTCTGGAATTGCATT
* * *
93193081 ATTTGTGGCATTTTCTTAAAAACGCCACTAAA
1 TTTTGTGGCGTTTT-TGAAAAACGCCACTAAA
93193113 AGTTTAACTA
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
84 93 0.85
85 17 0.15
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (83 bp):
TTTTGTGGCGTTTTTGAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTTC
GTGGTCTGGAATTGCATT
Found at i:93193516 original size:12 final size:12
Alignment explanation
Indices: 93193499--93193524 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
93193489 TTAAAATAGC
93193499 ACGACCTCTTTT
1 ACGACCTCTTTT
93193511 ACGACCTCTTTT
1 ACGACCTCTTTT
93193523 AC
1 AC
93193525 AGTTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.35, G:0.08, T:0.38
Consensus pattern (12 bp):
ACGACCTCTTTT
Found at i:93194381 original size:111 final size:112
Alignment explanation
Indices: 93194136--93194723 Score: 975
Period size: 112 Copynumber: 5.3 Consensus size: 112
93194126 AACACCTAGA
* * *
93194136 TTAGCGGCGCTTTACAAAAAACGCCACTAA-TGCCCCCCAAAGGACACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* * * * * ** *
93194200 GAGTATTATTTGCGGCATTTTTTTATAAGCGCTGCTAATGTTCACTCT
66 GTGTATTATTTGCGGC-GTTATCTATAAACGCCACTAATGCTCACTCT
93194248 TTAGCGGCGCTTTACAATAAACGCCACTAAGT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
93194312 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
**
93194359 TTAGCGGCGCTTCGCAATAAACGCCACTAAGT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* *
93194423 GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
*
93194470 TTAGCGGCGCTTTACAATAAATGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
93194535 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
93194582 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
93194647 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
* **
93194694 TTAGCGGCGCTTTTCCTTAAACGCCACTAA
1 TTAGCGGCGCTTTACAATAAACGCCACTAA
93194724 TGCTCACTCT
Statistics
Matches: 451, Mismatches: 23, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
111 160 0.35
112 290 0.64
113 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (112 bp):
TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
Found at i:93194509 original size:223 final size:223
Alignment explanation
Indices: 93194136--93194723 Score: 991
Period size: 223 Copynumber: 2.6 Consensus size: 223
93194126 AACACCTAGA
* * *
93194136 TTAGCGGCGCTTTACAAAAAACGCCACTAA-TGCCCCCCAAAGGACACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* * * * * *
93194200 GAGTATTATTTGCGGCATTTTTTTATAAGCGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAA
66 GTGTATTATTTGCGGC-GTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAA
93194265 TAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGCGGCGT
130 TAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGCGGCGT
93194330 TATCTATAAACGCCACTAATGCTCACTCT
195 TATCTATAAACGCCACTAATGCTCACTCT
**
93194359 TTAGCGGCGCTTCGCAATAAACGCCACTAAGT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
93194423 GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAAT
66 GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAAT
*
93194488 AAATGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGCGGCGT
131 AAACGCCACTAAGT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGCGGCGT
93194553 TATCTATAAACGCCACTAATGCTCACTCT
195 TATCTATAAACGCCACTAATGCTCACTCT
93194582 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* * * **
93194647 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTCCTT
66 GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAAT
93194712 AAACGCCACTAA
131 AAACGCCACTAA
93194724 TGCTCACTCT
Statistics
Matches: 343, Mismatches: 19, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
222 57 0.17
223 182 0.53
224 104 0.30
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (223 bp):
TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAAT
AAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGCGGCGTT
ATCTATAAACGCCACTAATGCTCACTCT
Found at i:93194716 original size:40 final size:40
Alignment explanation
Indices: 93194671--93194787 Score: 198
Period size: 40 Copynumber: 2.9 Consensus size: 40
93194661 GCGTTATCTA
**
93194671 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTCCT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
93194711 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
* *
93194751 TAAACGCCGCTATTGCTCACTCTTTAGCGGCGCTTTT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTT
93194788 GCTCCAAACA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (40 bp):
TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
Found at i:93194881 original size:7 final size:7
Alignment explanation
Indices: 93194869--93194897 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
93194859 TAAATCAAGG
93194869 TTTGTAA
1 TTTGTAA
93194876 TTTGTAA
1 TTTGTAA
93194883 TTTGTAA
1 TTTGTAA
93194890 TTTGTAA
1 TTTGTAA
93194897 T
1 T
93194898 ATTTGTTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.59
Consensus pattern (7 bp):
TTTGTAA
Found at i:93196393 original size:132 final size:130
Alignment explanation
Indices: 93195910--93196409 Score: 476
Period size: 131 Copynumber: 3.8 Consensus size: 130
93195900 AGGCGATATG
* * * * *
93195910 CGATATTTGGTAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCGTTTGCTT-AA
1 CGATGTTTGATAATTCG-GGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTG-TTCAA
* * *
93195974 AATAATCAAATATCCCTTCA-AGATTTCACTCA-TTTCTTCTAAAAATCCTTTAAAACGAAAGCA
64 AATAATCAAATATTCCTTCAGA-ATTTCACTCACGTT-TTCTAAAAA-CCTTTAAAACGAAAGAA
93196037 ATACT
126 ATACT
* * ** *
93196042 CGGTGTTTGATAATTCGAGAATCA-TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAA
1 CGATGTTTGATAATTCGGGAAT-AGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAA
* * ** ** *
93196106 ATAATCGAATATTCCTTTAGGTTTTCACTCGTGTTTAT-TAAAAACCTTCCAAAACG-AAGACAA
65 ATAATCAAATATTCCTTCAGAATTTCACTCACGTTT-TCTAAAAACCTT-TAAAACGAAAGA-AA
93196169 TACT
127 TACT
* * * ** * *
93196173 CGGTGTTTGATAATTCGGGAATAGTGCCCTAAT-GTGTTAGGTTGTGATTTCTCGTTTTTTCAAA
1 CGATGTTTGATAATTCGGGAATAGTGCCCT-ATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAA
* * *
93196237 ACAATCAAAGATTCCTT-TGAAATTTCACTCACGTTTTCTAAAAACCCTTTAAAACGAAAGAAAT
65 ATAATCAAATATTCCTTCAG-AATTTCACTCACGTTTTCTAAAAA-CCTTTAAAACGAAAGAAAT
**
93196301 GTT
128 ACT
**
93196304 CGATGTTTGGCAATTCGGTGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAA
1 CGATGTTTGATAATTCGG-GAATAGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAA
* ** * *
93196369 ATAATCGAATATAACTTCAGAATTTCACTCGCATTTTCTAA
65 ATAATCAAATATTCCTTCAGAATTTCACTCACGTTTTCTAA
93196410 GGCAAGGCAA
Statistics
Matches: 301, Mismatches: 51, Indels: 32
0.78 0.13 0.08
Matches are distributed among these distances:
130 12 0.04
131 193 0.64
132 95 0.32
133 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36
Consensus pattern (130 bp):
CGATGTTTGATAATTCGGGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAA
TAATCAAATATTCCTTCAGAATTTCACTCACGTTTTCTAAAAACCTTTAAAACGAAAGAAATACT
Found at i:93196399 original size:263 final size:263
Alignment explanation
Indices: 93195915--93196399 Score: 629
Period size: 262 Copynumber: 1.8 Consensus size: 263
93195905 ATATGCGATA
* * * *
93195915 TTTGGTAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCGTTTGCTTAAAATAAT
1 TTTGATAATTCGCGGAATAGTGCCCTAACGTGTTAGGTTGCAATTTCCCGTTTGCTTAAAACAAT
* * * * *
93195980 CAAATATCCCTTCAAGATTTCACTCATTTCTTCTAAAAATCCTTTAAAACGAAAGCAATACTCGG
66 CAAAGATCCCTTCAAGATTTCACTCAGTTCTTCTAAAAACCCTTTAAAACGAAAGAAATACTCGA
* ** *
93196045 TGTTTGATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAATAA
131 TGTTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAA
** * **
93196110 TCGAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTTCCAAAACGAAGACAATACTCG
196 TCGAATATAACTTCAGAATTTCACTCGTGTTTATTAAAAACCTTCCAAAACGAAGACAATACTCG
93196175 GTG
261 GTG
* ** * *
93196178 TTTGATAATTCG-GGAATAGTGCCCTAATGTGTTAGGTTGTGATTTCTCGTTT-TTTCAAAACAA
1 TTTGATAATTCGCGGAATAGTGCCCTAACGTGTTAGGTTGCAATTTCCCGTTTGCTT-AAAACAA
* * **
93196241 TCAAAGATTCCTTTGAA-ATTTCACTCACGTT-TTCTAAAAACCCTTTAAAACGAAAGAAATGTT
65 TCAAAGA-TCCCTTCAAGATTTCACTCA-GTTCTTCTAAAAACCCTTTAAAACGAAAGAAATACT
* *
93196304 CGATGTTTGGCAATTCGGTGAAT-AGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAA
128 CGATGTTTGACAATTC-GAGAATCA-TGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAA
93196368 AATAATCGAATATAACTTCAGAATTTCACTCG
191 AATAATCGAATATAACTTCAGAATTTCACTCG
93196400 CATTTTCTAA
Statistics
Matches: 188, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
261 2 0.01
262 98 0.52
263 88 0.47
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (263 bp):
TTTGATAATTCGCGGAATAGTGCCCTAACGTGTTAGGTTGCAATTTCCCGTTTGCTTAAAACAAT
CAAAGATCCCTTCAAGATTTCACTCAGTTCTTCTAAAAACCCTTTAAAACGAAAGAAATACTCGA
TGTTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAA
TCGAATATAACTTCAGAATTTCACTCGTGTTTATTAAAAACCTTCCAAAACGAAGACAATACTCG
GTG
Found at i:93202236 original size:35 final size:35
Alignment explanation
Indices: 93202184--93202313 Score: 129
Period size: 35 Copynumber: 3.7 Consensus size: 35
93202174 TCCATGGCAA
* * *
93202184 AGTT-TGAAACCTAAGGTATGGTATTAACCATACTG
1 AGTTGTGAAACGT-AGGTATGATATTATCCATACTG
*
93202219 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
1 AGTTGTGAAACGTAGGTATGATATTATCCATACTG
** * * *
93202254 AGTTAAGAAACGTAAGTATGACATT-TCCTATACCG
1 AGTTGTGAAACGTAGGTATGATATTATCC-ATACTG
* *
93202289 AGCTGTGAAATGTAGGTATGATATT
1 AGTTGTGAAACGTAGGTATGATATT
93202314 TCAATGAGGA
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
34 3 0.04
35 69 0.87
36 7 0.09
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.32
Consensus pattern (35 bp):
AGTTGTGAAACGTAGGTATGATATTATCCATACTG
Found at i:93210599 original size:35 final size:36
Alignment explanation
Indices: 93210555--93210682 Score: 136
Period size: 35 Copynumber: 3.6 Consensus size: 36
93210545 TCCTCATTGA
* *
93210555 AATACCATACCTACATTTCACAACTCGGTATGGGA-
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAT
** * * **
93210590 AATGTCATACTTATGTTTCTTAACTCAGTAT-GGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAT
*
93210625 AATACCATACCTACGTTTCACAACTCAGTAT-GGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAT
*
93210660 AATACTATACCTTACGTTTCACA
1 AATACCATACC-TACGTTTCACA
93210683 CTTTGCCATG
Statistics
Matches: 75, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
34 3 0.04
35 61 0.81
36 11 0.15
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.34
Consensus pattern (36 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGGAT
Found at i:93212925 original size:16 final size:17
Alignment explanation
Indices: 93212893--93212929 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
93212883 TCATTTAGAT
*
93212893 AATTTTAAAATTTATAA
1 AATTTTAAAATTAATAA
93212910 AATTTT-AAATTAATAA
1 AATTTTAAAATTAATAA
93212926 AATT
1 AATT
93212930 AAAATTACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTTAAAATTAATAA
Found at i:93212936 original size:15 final size:16
Alignment explanation
Indices: 93212896--93212936 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
93212886 TTTAGATAAT
*
93212896 TTTAAAATTTATAAAA
1 TTTAAAATTAATAAAA
*
93212912 TTTTAAATTAATAAAA
1 TTTAAAATTAATAAAA
93212928 -TTAAAATTA
1 TTTAAAATTA
93212937 CACTTTAGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTAAAATTAATAAAA
Found at i:93213698 original size:2 final size:2
Alignment explanation
Indices: 93213691--93213720 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
93213681 AAATAAGTTC
*
93213691 TA TA TA TA GA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
93213721 GATTGACTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:93215394 original size:21 final size:21
Alignment explanation
Indices: 93215329--93215394 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
93215319 GAAAATTTTT
* * *
93215329 AAATTTTTA-ACTTTCTTTAT
1 AAATTTTTAGAATTTTTTTAA
* **
93215349 ATATTTTTAGAATTTTTTTTG
1 AAATTTTTAGAATTTTTTTAA
93215370 AAATTTTTAGAATTTTTTTAA
1 AAATTTTTAGAATTTTTTTAA
93215391 AAAT
1 AAAT
93215395 ATAAATTTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
20 8 0.22
21 29 0.78
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (21 bp):
AAATTTTTAGAATTTTTTTAA
Found at i:93215409 original size:26 final size:25
Alignment explanation
Indices: 93215370--93215420 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
93215360 ATTTTTTTTG
*
93215370 AAATTTTTAGAATTTTTTTAAAAATAT
1 AAATTTTGAGAA--TTTTTAAAAATAT
93215397 AAATTTTGA-AATTTTTAAAAATAT
1 AAATTTTGAGAATTTTTAAAAATAT
93215421 TTTGGATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 13 0.57
26 2 0.09
27 8 0.35
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (25 bp):
AAATTTTGAGAATTTTTAAAAATAT
Found at i:93221272 original size:22 final size:24
Alignment explanation
Indices: 93221237--93221282 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
93221227 CTGAATTATT
93221237 ATTTAACAATG-AAAATATTATTAA
1 ATTTAACAATGAAAAATA-TATTAA
93221261 ATTTAA-AA-GAAAAATATATTAA
1 ATTTAACAATGAAAAATATATTAA
93221283 TATTAATATC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 7 0.33
23 8 0.38
24 6 0.29
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (24 bp):
ATTTAACAATGAAAAATATATTAA
Found at i:93230247 original size:17 final size:17
Alignment explanation
Indices: 93230227--93230266 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
93230217 TATGTGTTAT
*
93230227 AAATTACATAATATATA
1 AAATTACATAATATAAA
*
93230244 AAATGACATAATATAAA
1 AAATTACATAATATAAA
93230261 AAATTA
1 AAATTA
93230267 TAAAAATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (17 bp):
AAATTACATAATATAAA
Found at i:93239137 original size:33 final size:33
Alignment explanation
Indices: 93239071--93239193 Score: 135
Period size: 33 Copynumber: 3.8 Consensus size: 33
93239061 TACTTAAATG
*
93239071 GTAC-ACTTGAAAAGGTTATGTACA-TTTGTGT
1 GTACAACTTGAAAAGGATATGTACACTTTGTGT
* *
93239102 GTACAATTTGAAAAGGCTATGTACACTTTGTGT
1 GTACAACTTGAAAAGGATATGTACACTTTGTGT
* * ** *
93239135 GTACAACTTGCAAAGAATACATACACTTTGAGT
1 GTACAACTTGAAAAGGATATGTACACTTTGTGT
*
93239168 GTACCACTTGAAAAGGGA-ATGTACAC
1 GTACAACTTGAAAA-GGATATGTACAC
93239194 CTCGAGTGTA
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
31 4 0.05
32 18 0.24
33 51 0.68
34 2 0.03
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (33 bp):
GTACAACTTGAAAAGGATATGTACACTTTGTGT
Found at i:93240816 original size:9 final size:9
Alignment explanation
Indices: 93240804--93240836 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
93240794 GAATTATTCG
93240804 AATCGAGTT
1 AATCGAGTT
*
93240813 AATCGAATT
1 AATCGAGTT
93240822 AATCGAGTT
1 AATCGAGTT
93240831 AATCGA
1 AATCGA
93240837 ATCAACTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (9 bp):
AATCGAGTT
Found at i:93240827 original size:18 final size:18
Alignment explanation
Indices: 93240804--93240838 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
93240794 GAATTATTCG
93240804 AATCGAGTTAATCGAATT
1 AATCGAGTTAATCGAATT
93240822 AATCGAGTTAATCGAAT
1 AATCGAGTTAATCGAAT
93240839 CAACTTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.31
Consensus pattern (18 bp):
AATCGAGTTAATCGAATT
Found at i:93241556 original size:22 final size:24
Alignment explanation
Indices: 93241514--93241561 Score: 64
Period size: 22 Copynumber: 2.0 Consensus size: 24
93241504 CTTTCAAAAA
*
93241514 AAATAATTAAAATTATATTTATATT
1 AAATAATTAAAA-TATATTTAAATT
93241539 AAATAA-TAAAA-ATATTTAAATT
1 AAATAATTAAAATATATTTAAATT
93241561 A
1 A
93241562 TTTTATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 11 0.50
24 5 0.23
25 6 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
AAATAATTAAAATATATTTAAATT
Found at i:93241572 original size:32 final size:34
Alignment explanation
Indices: 93241512--93241579 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 34
93241502 TCCTTTCAAA
93241512 AAAAATAATTAAAATTATATTTATATTAAATAAT
1 AAAAATAATTAAAATTATATTTATATTAAATAAT
*
93241546 AAAAAT-ATTTAAATTAT-TTTATATTAAATAAT
1 AAAAATAATTAAAATTATATTTATATTAAATAAT
93241578 AA
1 AA
93241580 TTTAAAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
32 17 0.52
33 10 0.30
34 6 0.18
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (34 bp):
AAAAATAATTAAAATTATATTTATATTAAATAAT
Found at i:93241655 original size:16 final size:17
Alignment explanation
Indices: 93241636--93241670 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
93241626 ATAATAAAAA
*
93241636 ATTTAA-TATTTAATTT
1 ATTTAATTATTAAATTT
93241652 ATTTAATTATTAAATTT
1 ATTTAATTATTAAATTT
93241669 AT
1 AT
93241671 ATTTATATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTAATTATTAAATTT
Found at i:93241658 original size:28 final size:28
Alignment explanation
Indices: 93241622--93241675 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
93241612 TCATTAAAAA
93241622 TTATATAA-TAAAAAATTTAATATTTAAT
1 TTATATAATTAAAAAATTT-ATATTTAAT
* **
93241650 TTATTTAATTATTAAATTTATATTTA
1 TTATATAATTAAAAAATTTATATTTA
93241676 TATCATATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 14 0.64
29 8 0.36
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
TTATATAATTAAAAAATTTATATTTAAT
Found at i:93243394 original size:14 final size:14
Alignment explanation
Indices: 93243375--93243406 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
93243365 AGGTCATTTA
93243375 GCCCAACCAAACTG
1 GCCCAACCAAACTG
93243389 GCCCAACCAAACTG
1 GCCCAACCAAACTG
93243403 GCCC
1 GCCC
93243407 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:93248069 original size:14 final size:14
Alignment explanation
Indices: 93248050--93248081 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
93248040 AGGTCATTTA
93248050 GCCCAACCAAACTG
1 GCCCAACCAAACTG
93248064 GCCCAACCAAACTG
1 GCCCAACCAAACTG
93248078 GCCC
1 GCCC
93248082 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:93250002 original size:35 final size:35
Alignment explanation
Indices: 93249963--93250031 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
93249953 ACTTGCCTCT
93249963 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
*
93249998 TCCCACTCTCCCATGTTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
93250032 TCACACACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.17, C:0.49, G:0.12, T:0.22
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:93250715 original size:3 final size:3
Alignment explanation
Indices: 93250691--93250749 Score: 75
Period size: 3 Copynumber: 19.7 Consensus size: 3
93250681 AATATCCTTG
* *
93250691 TTA TTT TTA -TA TTA TTA ATA TTA TTA TTTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
*
93250736 TTA TTG TTA TTA TT
1 TTA TTA TTA TTA TT
93250750 GTACATTAGT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
2 2 0.04
3 43 0.90
4 3 0.06
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:93250724 original size:19 final size:19
Alignment explanation
Indices: 93250700--93250737 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
93250690 GTTATTTTTA
93250700 TATTATTAATATTATTATT
1 TATTATTAATATTATTATT
*
93250719 TATTATTATTATTATTATT
1 TATTATTAATATTATTATT
93250738 ATTGTTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TATTATTAATATTATTATT
Found at i:93250856 original size:3 final size:3
Alignment explanation
Indices: 93250848--93250872 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
93250838 TGTGTTTCAA
93250848 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
93250873 TTTAATGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:93251089 original size:22 final size:23
Alignment explanation
Indices: 93251061--93251115 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
93251051 AATTTTTTTA
93251061 ATATATATTATATGAATA-ATTT
1 ATATATATTATATGAATATATTT
* *
93251083 ATATATAATATTATGTATATATTT
1 ATATATATTA-TATGAATATATTT
93251107 -TA-ATATTAT
1 ATATATATTAT
93251116 CAGTTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.50
23 9 0.32
24 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATATATTATATGAATATATTT
Found at i:93253070 original size:23 final size:24
Alignment explanation
Indices: 93253039--93253089 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
93253029 TAACATTTCC
93253039 TTTAATTAATTAAAAA-AAATTAA
1 TTTAATTAATTAAAAATAAATTAA
* *
93253062 TTTATTTAATTAAAAATCAATTAA
1 TTTAATTAATTAAAAATAAATTAA
93253086 TTTA
1 TTTA
93253090 CTTGGCTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTAATTAATTAAAAATAAATTAA
Found at i:93253667 original size:14 final size:14
Alignment explanation
Indices: 93253648--93253677 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93253638 CCAACTATTT
*
93253648 TTCTTTTTCTTTCA
1 TTCTTTTTCTTGCA
93253662 TTCTTTTTCTTGCA
1 TTCTTTTTCTTGCA
93253676 TT
1 TT
93253678 TACAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.20, G:0.03, T:0.70
Consensus pattern (14 bp):
TTCTTTTTCTTGCA
Found at i:93254734 original size:2 final size:2
Alignment explanation
Indices: 93254727--93254753 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
93254717 CACTTAGCTT
93254727 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
93254754 TTGATAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:93257959 original size:14 final size:14
Alignment explanation
Indices: 93257930--93257959 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93257920 TTTATTTATG
*
93257930 TTTTTAAATTTTAT
1 TTTTTAAATTTAAT
93257944 TTTTTAAATTTAAT
1 TTTTTAAATTTAAT
93257958 TT
1 TT
93257960 AATTTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTAAATTTAAT
Found at i:93259360 original size:81 final size:76
Alignment explanation
Indices: 93259250--93259401 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 76
93259240 ATTATTTTGT
*
93259250 TAAATTTAGGTTCATTATATCATTTCTTAGTTAAATTGCTACCAAGTGAATTTTTTTTTATTTCA
1 TAAATTTAGGTTCATTACATCATTTCTTAGTTAAATTGCTACCAAGTGAA--TTTTTTTATTTCA
93259315 AAATGTCAAATCA
64 AAATGTCAAATCA
* *
93259328 TAAATTTAGGTTCATTACAACATCATTTCTTAGTTATATTGCTACCGAGTGAATTTTTTTATTTC
1 TAAATTTAGGTTCATT---ACATCATTTCTTAGTTAAATTGCTACCAAGTGAATTTTTTTATTTC
93259393 AAAATGTCA
63 AAAATGTCA
93259402 TACCAACCAA
Statistics
Matches: 68, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
78 16 0.24
79 21 0.31
81 31 0.46
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.45
Consensus pattern (76 bp):
TAAATTTAGGTTCATTACATCATTTCTTAGTTAAATTGCTACCAAGTGAATTTTTTTATTTCAAA
ATGTCAAATCA
Found at i:93262545 original size:13 final size:13
Alignment explanation
Indices: 93262527--93262551 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93262517 ATAATTGAAG
93262527 TTTATTTTTTTAA
1 TTTATTTTTTTAA
93262540 TTTATTTTTTTA
1 TTTATTTTTTTA
93262552 TTTTTACGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATTTTTTTAA
Found at i:93268256 original size:5 final size:5
Alignment explanation
Indices: 93268246--93268270 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
93268236 AACCTTATTC
93268246 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
93268271 GAAGTCTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:93273696 original size:39 final size:39
Alignment explanation
Indices: 93273642--93273722 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
93273632 TTCGATTCTT
93273642 ACTTTACATTTCACAAAAAAATGAATTTTATTTAAAATC
1 ACTTTACATTTCACAAAAAAATGAATTTTATTTAAAATC
93273681 ACTTTACATTTCACAAAAAAATGAATTTTATTTAAAATC
1 ACTTTACATTTCACAAAAAAATGAATTTTATTTAAAATC
93273720 ACT
1 ACT
93273723 CGAAAATATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (39 bp):
ACTTTACATTTCACAAAAAAATGAATTTTATTTAAAATC
Found at i:93274575 original size:17 final size:17
Alignment explanation
Indices: 93274553--93274599 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
93274543 TAATTTATGT
93274553 TAATTTATAAATTTTT-A
1 TAATTT-TAAATTTTTAA
*
93274570 TAATTTTAATTTTTTAA
1 TAATTTTAAATTTTTAA
93274587 TAAATTTTAAATT
1 T-AATTTTAAATT
93274600 ATTTTTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 8 0.31
17 8 0.31
18 10 0.38
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TAATTTTAAATTTTTAA
Found at i:93277637 original size:3 final size:3
Alignment explanation
Indices: 93277629--93277725 Score: 85
Period size: 3 Copynumber: 32.7 Consensus size: 3
93277619 TTTAGCTACT
* * *
93277629 TTA TTA TTA -AA TTA GTTA TTT TTA TTA TTA TT- TTC TT- TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
93277672 TTA TT- TATA TTCA TTA TTA TTA TTA TTA CTA TTA TTT TTA TTA TCA
1 TTA TTA T-TA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
93277718 TTA TTA TT
1 TTA TTA TT
93277726 TTTAAATCAT
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
2 6 0.08
3 64 0.83
4 7 0.09
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:93278044 original size:5 final size:5
Alignment explanation
Indices: 93278029--93278059 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
93278019 TTATTTACCT
93278029 TTTTA -TTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
93278060 GTTTATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:93278052 original size:15 final size:14
Alignment explanation
Indices: 93278029--93278069 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 14
93278019 TTATTTACCT
93278029 TTTTATTTATTTTA
1 TTTTATTTATTTTA
93278043 TTTTATTTTATTTTA
1 TTTTA-TTTATTTTA
93278058 TTGTTTATTTAT
1 -T-TTTATTTAT
93278070 ACCCTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 5 0.21
15 9 0.38
16 6 0.25
17 4 0.17
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTATTTTA
Found at i:93278115 original size:3 final size:3
Alignment explanation
Indices: 93278109--93278152 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
93278099 TATTTTGTTG
* * * *
93278109 TTA TTA TTA TTA ATA TTA CTA TCA TTA TTA TTA ATA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
93278153 TTTAAACCCC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:93279740 original size:23 final size:22
Alignment explanation
Indices: 93279690--93279745 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
93279680 AACCAATCCA
*
93279690 ATTCAACATATTTTCAAGATAG
1 ATTCATCATATTTTCAAGATAG
93279712 ATTCATGCATATTTAT-AAGATAG
1 ATTCAT-CATATTT-TCAAGATAG
93279735 CA-TCATCATAT
1 -ATTCATCATAT
93279746 ACCAAAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 10 0.33
23 18 0.60
24 2 0.07
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (22 bp):
ATTCATCATATTTTCAAGATAG
Found at i:93285635 original size:50 final size:50
Alignment explanation
Indices: 93285506--93285679 Score: 131
Period size: 50 Copynumber: 3.5 Consensus size: 50
93285496 AGAATCAAAG
* * * * * *
93285506 ATAATATCACAAATGTGCATACCTATATGGCCAAATATGCAAGA-TCAAAT
1 ATAACATCACATATGTACATACCTTTATGGTCAAATATACAAGATTC-AAT
* * * * * *
93285556 TTAACATCACCTAAGTACTTA-CTCATATGG-CTGAATATACAA-ATTCAAAT
1 ATAACATCACATATGTACATACCT-TTATGGTC-AAATATACAAGATTC-AAT
* * * * *
93285606 ATAATATCACTTTTGTGCATACCTTTATGGTCAAATATTCAAGATTCAAT
1 ATAACATCACATATGTACATACCTTTATGGTCAAATATACAAGATTCAAT
93285656 ATAACATCACATATGTACATACCT
1 ATAACATCACATATGTACATACCT
93285680 ATGTGGCCGA
Statistics
Matches: 95, Mismatches: 23, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
49 4 0.04
50 84 0.88
51 7 0.07
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (50 bp):
ATAACATCACATATGTACATACCTTTATGGTCAAATATACAAGATTCAAT
Found at i:93285692 original size:100 final size:100
Alignment explanation
Indices: 93285500--93285692 Score: 237
Period size: 100 Copynumber: 1.9 Consensus size: 100
93285490 TTATAGAGAA
*
93285500 TCAAAGATAATATCACAAATGTGCATACCTATATGGCCAAATATGCAAGATCAAATTTAACATCA
1 TCAAAGATAATATCACAAATGTGCATACCTATATGGCCAAATATGCAAGATCAAATATAACATCA
* * *
93285565 CCTAAGTACTTACTCATATGGCTGAATATACAAAT
66 CATAAGTACATACTCATATGGCCGAATATACAAAT
* *** * * *
93285600 TCAAATATAATATCACTTTTGTGCATACCTTTATGGTCAAATATTCAAGATTC-AATATAACATC
1 TCAAAGATAATATCACAAATGTGCATACCTATATGGCCAAATATGCAAGA-TCAAATATAACATC
* *
93285664 ACATATGTACATAC-CTATGTGGCCGAATA
65 ACATAAGTACATACTC-ATATGGCCGAATA
93285693 AATACAAGAT
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
99 1 0.01
100 75 0.96
101 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (100 bp):
TCAAAGATAATATCACAAATGTGCATACCTATATGGCCAAATATGCAAGATCAAATATAACATCA
CATAAGTACATACTCATATGGCCGAATATACAAAT
Found at i:93286468 original size:30 final size:29
Alignment explanation
Indices: 93286434--93286498 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
93286424 ATTCTCATAC
* *
93286434 TAGTCCATTTATTTCATT-TATTTCACATTT
1 TAGTCCATTAATTT-ATTAT-TTTCACAATT
*
93286464 TAGTCCCTTAATTTATTATTTTCACAATT
1 TAGTCCATTAATTTATTATTTTCACAATT
93286493 TAGTCC
1 TAGTCC
93286499 TAATTACTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 18 0.58
30 13 0.42
ACGTcount: A:0.25, C:0.18, G:0.05, T:0.52
Consensus pattern (29 bp):
TAGTCCATTAATTTATTATTTTCACAATT
Found at i:93286849 original size:23 final size:22
Alignment explanation
Indices: 93286823--93286876 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
93286813 TTAATTTATG
*
93286823 TTATAATATATAC-ATATTATTA
1 TTATAATATA-ACTATAATATTA
* *
93286845 CTTATATTATAACTTTAATATTA
1 -TTATAATATAACTATAATATTA
93286868 TTATAATAT
1 TTATAATAT
93286877 TATTTCCACC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.52
Consensus pattern (22 bp):
TTATAATATAACTATAATATTA
Found at i:93293169 original size:50 final size:50
Alignment explanation
Indices: 93293040--93293213 Score: 131
Period size: 50 Copynumber: 3.5 Consensus size: 50
93293030 AGAATCAAAG
* * * * * *
93293040 ATAATATCACAAATGTGCATACCTATATGGCCAAATATGCAAGA-TCAAAT
1 ATAACATCACATATGTACATACCTTTATGGTCAAATATACAAGATTC-AAT
* * * * * *
93293090 TTAACATCACCTAAGTACTTA-CTCATATGG-CTGAATATACAA-ATTCAAAT
1 ATAACATCACATATGTACATACCT-TTATGGTC-AAATATACAAGATTC-AAT
* * * * *
93293140 ATAATATCACTTTTGTGCATACCTTTATGGTCAAATATTCAAGATTCAAT
1 ATAACATCACATATGTACATACCTTTATGGTCAAATATACAAGATTCAAT
93293190 ATAACATCACATATGTACATACCT
1 ATAACATCACATATGTACATACCT
93293214 ATGTGGCCGA
Statistics
Matches: 95, Mismatches: 23, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
49 4 0.04
50 84 0.88
51 7 0.07
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (50 bp):
ATAACATCACATATGTACATACCTTTATGGTCAAATATACAAGATTCAAT
Found at i:93293226 original size:100 final size:100
Alignment explanation
Indices: 93293034--93293226 Score: 237
Period size: 100 Copynumber: 1.9 Consensus size: 100
93293024 TTATAGAGAA
*
93293034 TCAAAGATAATATCACAAATGTGCATACCTATATGGCCAAATATGCAAGATCAAATTTAACATCA
1 TCAAAGATAATATCACAAATGTGCATACCTATATGGCCAAATATGCAAGATCAAATATAACATCA
* * *
93293099 CCTAAGTACTTACTCATATGGCTGAATATACAAAT
66 CATAAGTACATACTCATATGGCCGAATATACAAAT
* *** * * *
93293134 TCAAATATAATATCACTTTTGTGCATACCTTTATGGTCAAATATTCAAGATTC-AATATAACATC
1 TCAAAGATAATATCACAAATGTGCATACCTATATGGCCAAATATGCAAGA-TCAAATATAACATC
* *
93293198 ACATATGTACATAC-CTATGTGGCCGAATA
65 ACATAAGTACATACTC-ATATGGCCGAATA
93293227 AATACAAGAT
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
99 1 0.01
100 75 0.96
101 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (100 bp):
TCAAAGATAATATCACAAATGTGCATACCTATATGGCCAAATATGCAAGATCAAATATAACATCA
CATAAGTACATACTCATATGGCCGAATATACAAAT
Found at i:93294383 original size:23 final size:22
Alignment explanation
Indices: 93294357--93294410 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
93294347 TTAATTTATG
*
93294357 TTATAATATATAC-ATATTATTA
1 TTATAATATA-ACTATAATATTA
* *
93294379 CTTATATTATAACTTTAATATTA
1 -TTATAATATAACTATAATATTA
93294402 TTATAATAT
1 TTATAATAT
93294411 TATTTCCACC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.52
Consensus pattern (22 bp):
TTATAATATAACTATAATATTA
Found at i:93298426 original size:46 final size:46
Alignment explanation
Indices: 93298359--93298575 Score: 283
Period size: 46 Copynumber: 4.7 Consensus size: 46
93298349 TGGCAACCTG
*
93298359 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
** *
93298405 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* *
93298451 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTAACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** * *
93298497 AGAATAAGACCATGGTTGAAAGTTACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAA
* * * *
93298543 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
93298576 TCACGTCAAA
Statistics
Matches: 151, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.01
46 150 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:93298561 original size:138 final size:130
Alignment explanation
Indices: 93298320--93298575 Score: 334
Period size: 138 Copynumber: 1.9 Consensus size: 130
93298310 CATATATGAA
* **
93298320 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTTGAAAGATAC
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAATAAGACCATGGTTGAAAGATAC
* * * * *
93298385 CATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGAG
66 CATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACCTGATGTGAG
93298450 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTAACATGAAAAGAATAAGACCATGGTTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC----C-TG---AGAATAAGACCATGGTTG
* *
93298515 AAAGTTACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
58 AAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACACCATGGCA
93298576 TCACGTCAAA
Statistics
Matches: 107, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
130 36 0.34
134 1 0.01
135 2 0.02
137 1 0.01
138 67 0.63
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (130 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAATAAGACCATGGTTGAAAGATAC
CATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACCTGATGTGAG
Found at i:93300027 original size:34 final size:33
Alignment explanation
Indices: 93299974--93300046 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
93299964 GTATGCATCT
93299974 CTGATACTATACTGAATTGGGCTAAGGCCCACA
1 CTGATACTATACTGAATTGGGCTAAGGCCCACA
* * * *
93300007 CTGATACTGTTACTGTATTGGGTTAAGGCCTACA
1 CTGATACT-ATACTGAATTGGGCTAAGGCCCACA
93300041 CTGATA
1 CTGATA
93300047 TTGCCACTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
33 8 0.23
34 27 0.77
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (33 bp):
CTGATACTATACTGAATTGGGCTAAGGCCCACA
Found at i:93302198 original size:13 final size:13
Alignment explanation
Indices: 93302180--93302205 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93302170 TCATCTAGTT
93302180 TACATCTTAATTA
1 TACATCTTAATTA
93302193 TACATCTTAATTA
1 TACATCTTAATTA
93302206 AACCAATCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (13 bp):
TACATCTTAATTA
Found at i:93304870 original size:13 final size:13
Alignment explanation
Indices: 93304852--93304877 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93304842 TGGCCCTCCA
93304852 AAAGCTATTTAAT
1 AAAGCTATTTAAT
93304865 AAAGCTATTTAAT
1 AAAGCTATTTAAT
93304878 TGGTATTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAGCTATTTAAT
Found at i:93306986 original size:43 final size:42
Alignment explanation
Indices: 93306914--93307001 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 42
93306904 ATGATAAAAA
* *
93306914 TTTAAAATATTTTTTTGGTACAAATAAATAATACAAAATTTAAAT
1 TTTAAAAAATATTTTT-GTACAAATAAATAAT--AAAATTTAAAT
93306959 TTTAAAAAATATTTTT-TACAAATAAATAATAAAATTTAAAT
1 TTTAAAAAATATTTTTGTACAAATAAATAATAAAATTTAAAT
93307000 TT
1 TT
93307002 AGTAGTTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
41 13 0.32
43 14 0.34
45 14 0.34
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.43
Consensus pattern (42 bp):
TTTAAAAAATATTTTTGTACAAATAAATAATAAAATTTAAAT
Found at i:93315006 original size:141 final size:140
Alignment explanation
Indices: 93314826--93315097 Score: 413
Period size: 141 Copynumber: 1.9 Consensus size: 140
93314816 CATCGAGTTT
*
93314826 AAAAATGCCGCTAAAAGATTAACCTGAACGACGTCGTTTATTTTAAGCTTCAGTGGCATTAGCGG
1 AAAAACGCCGCTAAAAGATTAACCTGAACGACGTCGTTTATTTTAAGCTTCAGTGGCATTAGCGG
* * *
93314891 CGCCTTC-ACAAGAACGCTGCAATAGATCGAGCATTAGCGGCATTTTTAAGAAAGCACCGCTATA
66 CGCCTTCTA-AA-AACGCCGCAATAGATCAAGCATTAGCGGCATTTTTAAGAAAGCACCACTATA
93314955 GGTTGACTTATA
129 GGTTGACTTATA
* *
93314967 AAAAACGCCGCTAAAAGATTAAGCC-GAACGACGTCGTTTATTTTGAGCTTCAGTGGTATTAGCG
1 AAAAACGCCGCTAAAAGATTAA-CCTGAACGACGTCGTTTATTTTAAGCTTCAGTGGCATTAGCG
* * * *
93315031 GCGCTTTCTAAAAATGCCGCAATAGATCAAGCATTAGCGGCGTTTTTAAGAGAGCACCACTATAG
65 GCGCCTTCTAAAAACGCCGCAATAGATCAAGCATTAGCGGCATTTTTAAGAAAGCACCACTATAG
93315096 GT
130 GT
93315098 AGCAGAACGA
Statistics
Matches: 119, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
140 49 0.41
141 67 0.56
142 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (140 bp):
AAAAACGCCGCTAAAAGATTAACCTGAACGACGTCGTTTATTTTAAGCTTCAGTGGCATTAGCGG
CGCCTTCTAAAAACGCCGCAATAGATCAAGCATTAGCGGCATTTTTAAGAAAGCACCACTATAGG
TTGACTTATA
Found at i:93318081 original size:13 final size:14
Alignment explanation
Indices: 93318065--93318093 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93318055 TTATAAATAT
93318065 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
93318078 TTATAATGGTTTAA
1 TTATAATGGTTTAA
93318092 TT
1 TT
93318094 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:93318531 original size:21 final size:21
Alignment explanation
Indices: 93318506--93318545 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
93318496 TAGAGCGGAT
*
93318506 GCAGCAGCGAGGGAGGCAGTG
1 GCAGCAGCGAGGAAGGCAGTG
93318527 GCAGCAGCGAGGAAGGCAG
1 GCAGCAGCGAGGAAGGCAG
93318546 AGCAGCGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.20, G:0.50, T:0.03
Consensus pattern (21 bp):
GCAGCAGCGAGGAAGGCAGTG
Found at i:93318549 original size:17 final size:17
Alignment explanation
Indices: 93318529--93318567 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
93318519 AGGCAGTGGC
93318529 AGCAGCGA-GGAAGGCAG
1 AGCAGCGATGGAA-GCAG
*
93318546 AGCAGCGATGGCAGCAG
1 AGCAGCGATGGAAGCAG
93318563 AGCAG
1 AGCAG
93318568 AGCACTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.33, C:0.21, G:0.44, T:0.03
Consensus pattern (17 bp):
AGCAGCGATGGAAGCAG
Found at i:93318849 original size:40 final size:40
Alignment explanation
Indices: 93318794--93318920 Score: 139
Period size: 40 Copynumber: 3.1 Consensus size: 40
93318784 ACAAAAATTG
* *
93318794 TAAAATACATAGCAATAGCGGCGTTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGC
**
93318835 TAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGTTTTA-CCAAAAACGCCGC
* * * **
93318876 GAAAAACAGAGTATTAGCGGCGCTTTTGGC-AAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGC
93318916 TAAAA
1 TAAAA
93318921 GTCATATAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
40 35 0.48
41 34 0.47
42 4 0.05
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.18
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGC
Found at i:93318869 original size:41 final size:40
Alignment explanation
Indices: 93318794--93318902 Score: 128
Period size: 41 Copynumber: 2.6 Consensus size: 40
93318784 ACAAAAATTG
* *
93318794 TAAAATACATAGCAATAGCGGCGTTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGTTTTACAAAAAACGCCAC
* *
93318835 TAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGTTTTA-CAAAAAACGCCAC
* * *
93318876 GAAAAACAGAGTATTAGCGGCGCTTTT
1 TAAAAACAGAGCAATAGCGGCG-TTTT
93318903 GGCAAAACGC
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 21 0.36
41 34 0.58
42 4 0.07
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGTTTTACAAAAAACGCCAC
Found at i:93319106 original size:21 final size:21
Alignment explanation
Indices: 93319082--93319157 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
93319072 TATCATTATA
*
93319082 GTTTATGGTTTAAGATATATG
1 GTTTAGGGTTTAAGATATATG
*
93319103 GTTTAGGGTTTAA-AT-GA--
1 GTTTAGGGTTTAAGATATATG
*
93319120 GTTAACTATGGTTTAAGATATATG
1 GTT---TAGGGTTTAAGATATATG
93319144 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
93319158 GTTTAGGAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
17 3 0.07
19 1 0.02
20 11 0.26
21 24 0.56
22 1 0.02
24 3 0.07
ACGTcount: A:0.29, C:0.01, G:0.26, T:0.43
Consensus pattern (21 bp):
GTTTAGGGTTTAAGATATATG
Found at i:93319299 original size:7 final size:7
Alignment explanation
Indices: 93319272--93319299 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
93319262 GGGGTTAAGG
93319272 GTTTAGA
1 GTTTAGA
93319279 GTTTAGA
1 GTTTAGA
93319286 GTTTAGA
1 GTTTAGA
93319293 GTTTAGA
1 GTTTAGA
93319300 AAAATAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (7 bp):
GTTTAGA
Found at i:93324277 original size:31 final size:31
Alignment explanation
Indices: 93324241--93324306 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
93324231 TGTATTTTTT
*
93324241 ATGCTACATTTGCTGTTTTTGGTTAGATTTA
1 ATGCTACATTTGCTATTTTTGGTTAGATTTA
* *
93324272 ATGCTATATTTGCTATTTTTGGTTGGATTTA
1 ATGCTACATTTGCTATTTTTGGTTAGATTTA
93324303 ATGC
1 ATGC
93324307 AGGAAGGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.20, C:0.09, G:0.20, T:0.52
Consensus pattern (31 bp):
ATGCTACATTTGCTATTTTTGGTTAGATTTA
Found at i:93328728 original size:20 final size:20
Alignment explanation
Indices: 93328690--93328728 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
93328680 TTTTTTTCAA
*
93328690 TTAAAAGATAAAAATAAAAG
1 TTAAAAGATAAAAAAAAAAG
93328710 TTAAAAGA-AAAATAAAAAA
1 TTAAAAGATAAAA-AAAAAA
93328729 TAGAGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (20 bp):
TTAAAAGATAAAAAAAAAAG
Found at i:93329265 original size:14 final size:14
Alignment explanation
Indices: 93329246--93329281 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
93329236 GGTTGTACAC
93329246 TTATTTGTGATTTT
1 TTATTTGTGATTTT
*
93329260 TTATTTATGATTTT
1 TTATTTGTGATTTT
*
93329274 TTTTTTGT
1 TTATTTGT
93329282 TTTTATCGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.75
Consensus pattern (14 bp):
TTATTTGTGATTTT
Found at i:93329899 original size:13 final size:14
Alignment explanation
Indices: 93329871--93329906 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
93329861 AAACGGATAT
93329871 AATATAATATTAAAA
1 AATA-AATATTAAAA
93329886 AATAAATATTAAAA
1 AATAAATATTAAAA
93329900 AA-AAATA
1 AATAAATA
93329907 CATGATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 5 0.24
14 12 0.57
15 4 0.19
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AATAAATATTAAAA
Found at i:93335575 original size:26 final size:26
Alignment explanation
Indices: 93335546--93335595 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
93335536 ACTTCAACAA
*
93335546 AGAAAAGCCACAATATGGGTATACAG
1 AGAAAAGCCACAATATGGGCATACAG
93335572 AGAAAAGCCACAATATGGGCATAC
1 AGAAAAGCCACAATATGGGCATAC
93335596 TTTTAATTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (26 bp):
AGAAAAGCCACAATATGGGCATACAG
Found at i:93337701 original size:41 final size:41
Alignment explanation
Indices: 93337639--93337880 Score: 195
Period size: 41 Copynumber: 5.9 Consensus size: 41
93337629 GGTGTTTGCA
* * *
93337639 AAAAACTGAACAATAGTGGCGTTTTTGGCCCAAACGCCACT
1 AAAAACTGATCAATAGCGGCGTTTTTGGTCCAAACGCCACT
* *
93337680 AAAAACTGATCAATAGCGGCGTTTTTAG-CTAAAACGCCACT
1 AAAAACTGATCAATAGCGGCGTTTTTGGTC-CAAACGCCACT
* ** * * * * *
93337721 AAAAACTAATGTATAGCGACGTTTTTATGT-AAAACACCACC
1 AAAAACTGATCAATAGCGGCGTTTTT-GGTCCAAACGCCACT
* * * * *
93337762 AAAAACTAAGCAATAGCGGTGTTTTTGGTTCAAAAGCCACT
1 AAAAACTGATCAATAGCGGCGTTTTTGGTCCAAACGCCACT
* * * *
93337803 -AAAACTGATCAATAGCGGCATTTTTGGTCCAAACACCGCA
1 AAAAACTGATCAATAGCGGCGTTTTTGGTCCAAACGCCACT
* * * *
93337843 AAAAAGTTTATCTACAGCGGC-TTTTTGGTCCAAACGCC
1 AAAAA-CTGATCAATAGCGGCGTTTTTGGTCCAAACGCC
93337881 TCAAAAAGTT
Statistics
Matches: 160, Mismatches: 35, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
40 34 0.21
41 114 0.71
42 12 0.08
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (41 bp):
AAAAACTGATCAATAGCGGCGTTTTTGGTCCAAACGCCACT
Found at i:93338211 original size:21 final size:22
Alignment explanation
Indices: 93338163--93338246 Score: 66
Period size: 21 Copynumber: 3.9 Consensus size: 22
93338153 TATGGCTTTC
*
93338163 TCTAAACCCTTAAATCCTAAACA
1 TCTAAA-CCTTAAACCCTAAACA
*
93338186 T-TAAACCTTAAACCCTAAA-T
1 TCTAAACCTTAAACCCTAAACA
* * *
93338206 TCTAAAACATAAACACTAAACA
1 TCTAAACCTTAAACCCTAAACA
* * *
93338228 -CTAATCCATAAACTCTAAA
1 TCTAAACCTTAAACCCTAAA
93338247 ACCCTAAACC
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
20 1 0.02
21 44 0.88
22 4 0.08
23 1 0.02
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.25
Consensus pattern (22 bp):
TCTAAACCTTAAACCCTAAACA
Found at i:93338255 original size:7 final size:7
Alignment explanation
Indices: 93338164--93338257 Score: 53
Period size: 7 Copynumber: 13.1 Consensus size: 7
93338154 ATGGCTTTCT
93338164 CTAAACC
1 CTAAACC
*
93338171 CTTAAATC
1 C-TAAACC
*
93338179 CTAAACA
1 CTAAACC
*
93338186 TTAAACC
1 CTAAACC
*
93338193 TTAAACC
1 CTAAACC
**
93338200 CTAAATT
1 CTAAACC
*
93338207 CTAAAAC
1 CTAAACC
* *
93338214 ATAAACA
1 CTAAACC
*
93338221 CTAAACA
1 CTAAACC
*
93338228 CTAATCC
1 CTAAACC
* *
93338235 ATAAACT
1 CTAAACC
93338242 CTAAAACC
1 CT-AAACC
93338250 CTAAACC
1 CTAAACC
93338257 C
1 C
93338258 CCCAAAAATC
Statistics
Matches: 64, Mismatches: 21, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
7 52 0.81
8 12 0.19
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:93338478 original size:36 final size:37
Alignment explanation
Indices: 93338400--93338479 Score: 110
Period size: 38 Copynumber: 2.2 Consensus size: 37
93338390 GTTTAAGGCA
*
93338400 TATGGTTTAGGGTTCAATCGTAGAATATATTTTAAGTT
1 TATGGTTTAGGGTTCAATCG-AGAATATATGTTAAGTT
*
93338438 TATGGTTTAGGGTTCAAT-G-GTATAGTATGTTAAGTT
1 TATGGTTTAGGGTTCAATCGAGAATA-TATGTTAAGTT
93338474 TATGGT
1 TATGGT
93338480 ATGGGCCGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
35 4 0.10
36 16 0.41
37 1 0.03
38 18 0.46
ACGTcount: A:0.26, C:0.04, G:0.25, T:0.45
Consensus pattern (37 bp):
TATGGTTTAGGGTTCAATCGAGAATATATGTTAAGTT
Found at i:93338561 original size:24 final size:24
Alignment explanation
Indices: 93338534--93338579 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
93338524 ATTAGTTTGT
* * *
93338534 TGTTTGGGGTTTGGGGTTTTAAAG
1 TGTTTAGGGTTTAGGGTCTTAAAG
93338558 TGTTTAGGGTTTAGGGTCTTAA
1 TGTTTAGGGTTTAGGGTCTTAA
93338580 TGTTCAAGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.15, C:0.02, G:0.37, T:0.46
Consensus pattern (24 bp):
TGTTTAGGGTTTAGGGTCTTAAAG
Found at i:93339355 original size:15 final size:15
Alignment explanation
Indices: 93339333--93339383 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
93339323 TTGATTTACC
93339333 TAAA-ATTTAAATAT
1 TAAATATTTAAATAT
*
93339347 TAAATATTTAAATAA
1 TAAATATTTAAATAT
* *
93339362 TAATTATTCAATATAAT
1 TAAATATTTAA-AT-AT
93339379 TAAAT
1 TAAAT
93339384 TTTTTTCAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 4 0.14
15 18 0.62
16 2 0.07
17 5 0.17
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAATATTTAAATAT
Found at i:93342671 original size:20 final size:20
Alignment explanation
Indices: 93342648--93342689 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
93342638 CACATACCCA
93342648 TGTGGCCT-GAGACATGCCCG
1 TGTGGCCTGGA-ACATGCCCG
*
93342668 TGTGGCCTGGAACATGGCCG
1 TGTGGCCTGGAACATGCCCG
93342688 TG
1 TG
93342690 GGGCTAGCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.14, C:0.26, G:0.38, T:0.21
Consensus pattern (20 bp):
TGTGGCCTGGAACATGCCCG
Found at i:93343241 original size:13 final size:13
Alignment explanation
Indices: 93343223--93343258 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
93343213 GATAATTAGA
93343223 AAATCATACATAC
1 AAATCATACATAC
*
93343236 AAATCATACATAT
1 AAATCATACATAC
93343249 AAATTCATAC
1 AAA-TCATAC
93343259 CAAACTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATCATACATAC
Found at i:93344876 original size:3 final size:3
Alignment explanation
Indices: 93344868--93344898 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
93344858 CAATTAACAG
93344868 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
93344899 GTAAATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Done.