Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 287 of 311
Found at i:93633970 original size:5 final size:5
Alignment explanation
Indices: 93633960--93633987 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
93633950 AATAATTAAG
93633960 TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TAT
93633988 TATATATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:93636550 original size:21 final size:22
Alignment explanation
Indices: 93636526--93636568 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
93636516 TGAAATTAGA
93636526 TTGAATTTAAAAATAT-ATATT
1 TTGAATTTAAAAATATAATATT
* **
93636547 TTGATTTTTGAAATATAATATT
1 TTGAATTTAAAAATATAATATT
93636569 ATAATAGTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (22 bp):
TTGAATTTAAAAATATAATATT
Found at i:93640913 original size:4 final size:4
Alignment explanation
Indices: 93640906--93640938 Score: 57
Period size: 4 Copynumber: 8.0 Consensus size: 4
93640896 ATTAGATTTT
93640906 GATG GATG GATG GATG GATG GATG GATG TGATG
1 GATG GATG GATG GATG GATG GATG GATG -GATG
93640939 TTCTTATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.24, C:0.00, G:0.48, T:0.27
Consensus pattern (4 bp):
GATG
Found at i:93649006 original size:3 final size:3
Alignment explanation
Indices: 93648998--93649030 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
93648988 GATCATCCAA
93648998 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
93649031 GGTCAAGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:93650257 original size:32 final size:32
Alignment explanation
Indices: 93650197--93650258 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
93650187 TACTAAAAAA
** *
93650197 AATTTAAAAATTATATAAAACTGTTAAATTAT
1 AATTTAAAAAAAATATAAAACTGATAAATTAT
93650229 AATTTAAAAAAAATTATAAAA-TGATAAATT
1 AATTTAAAAAAAA-TATAAAACTGATAAATT
93650259 TAAGGCCTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 19 0.73
33 7 0.27
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (32 bp):
AATTTAAAAAAAATATAAAACTGATAAATTAT
Found at i:93652502 original size:31 final size:32
Alignment explanation
Indices: 93652423--93652502 Score: 76
Period size: 33 Copynumber: 2.4 Consensus size: 32
93652413 AAATTAATTT
*
93652423 ATATTTTATTTATCATTATATTAAATTATTTAA
1 ATATTTTA-TTATCATTATATTAAATTATTAAA
*
93652456 ATATCGCTTATTATCA-TAT-TTAAAATT-TTAAA
1 ATAT--TTTATTATCATTATATT-AAATTATTAAA
93652488 ATATTTTATGTATCA
1 ATATTTTAT-TATCA
93652503 CTAGTTTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
30 4 0.10
31 5 0.12
32 10 0.25
33 12 0.30
34 6 0.15
35 3 0.08
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.53
Consensus pattern (32 bp):
ATATTTTATTATCATTATATTAAATTATTAAA
Found at i:93656325 original size:6 final size:6
Alignment explanation
Indices: 93656314--93656367 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
93656304 TTTCATTATC
* *
93656314 AAATAA AAATAA AAATAA AAATATA GAATCAA AACT-A AAATAA ATAATAA
1 AAATAA AAATAA AAATAA AAATA-A AAAT-AA AAATAA AAATAA A-AATAA
93656364 AAAT
1 AAAT
93656368 TAGATTAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 4 0.10
6 22 0.55
7 13 0.32
8 1 0.03
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:93657849 original size:5 final size:5
Alignment explanation
Indices: 93657841--93657870 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
93657831 TTTTTATTAG
*
93657841 TTAAA TTAAA TTAAA TTAAA TTAAT TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA
93657871 ATTGCCACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TTAAA
Found at i:93660504 original size:14 final size:14
Alignment explanation
Indices: 93660485--93660514 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
93660475 AAATCAAAGG
93660485 GATGGAGATTTAGA
1 GATGGAGATTTAGA
93660499 GATGGAGATTTAGA
1 GATGGAGATTTAGA
93660513 GA
1 GA
93660515 AGCAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.27
Consensus pattern (14 bp):
GATGGAGATTTAGA
Found at i:93660623 original size:14 final size:14
Alignment explanation
Indices: 93660604--93660633 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
93660594 AATGGTAGAA
93660604 GGATTTTGATTTGG
1 GGATTTTGATTTGG
93660618 GGATTTTGATTTGG
1 GGATTTTGATTTGG
93660632 GG
1 GG
93660634 GAAAAATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.40, T:0.47
Consensus pattern (14 bp):
GGATTTTGATTTGG
Found at i:93660678 original size:13 final size:13
Alignment explanation
Indices: 93660662--93660695 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
93660652 TGGGGATACC
*
93660662 GATTTTAGGGGGA
1 GATTTTAGGGAGA
93660675 GATTTTAGGGAGA
1 GATTTTAGGGAGA
*
93660688 AATTTTAG
1 GATTTTAG
93660696 ACGTTCCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (13 bp):
GATTTTAGGGAGA
Found at i:93662176 original size:54 final size:53
Alignment explanation
Indices: 93662080--93662195 Score: 133
Period size: 54 Copynumber: 2.2 Consensus size: 53
93662070 GTTTTTTGGA
* * * *
93662080 GTTTAGGGTTTTATGGGTTATAGTTTAGTTTTTAGGGGTTTTTAGGATTTAGAG
1 GTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTAGGAGTTTTTAGGATTTAG-G
* ** * *
93662134 GTTTAGTGTTTTAGGGGTTATAGATTAGTGTTTATTATTTTTTAGGGTTTAGG
1 GTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTAGGAGTTTTTAGGATTTAGG
93662187 GTTTTAGGG
1 G-TTTAGGG
93662196 ATTATATGAC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.04
54 49 0.96
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (53 bp):
GTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTAGGAGTTTTTAGGATTTAGG
Found at i:93662251 original size:41 final size:41
Alignment explanation
Indices: 93662206--93662283 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
93662196 ATTATATGAC
* *
93662206 TTTTAGCGGCATTTTATCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
93662247 TTTTAGCGGCGTTTTACCAAAAGTGCCGCTATTGCTC
1 TTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTC
93662284 CGTGTTTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:93669836 original size:21 final size:21
Alignment explanation
Indices: 93669810--93669853 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
93669800 AGGCACATCC
93669810 AAAGTATTTTATCTCCAGAAA
1 AAAGTATTTTATCTCCAGAAA
93669831 AAAGTATTTTATCTCCAGAAA
1 AAAGTATTTTATCTCCAGAAA
93669852 AA
1 AA
93669854 CGGTGGTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (21 bp):
AAAGTATTTTATCTCCAGAAA
Found at i:93672152 original size:62 final size:63
Alignment explanation
Indices: 93672023--93672153 Score: 160
Period size: 62 Copynumber: 2.1 Consensus size: 63
93672013 ATATTAAAAT
* * * * * *
93672023 TTTAAAAATTTAAATTTGCTTATACTTAAATTTTCTTTTAATATGTTTCAAAATTTTAATAGA
1 TTTAAATATTTAAAATTGATTATACTCAAATTTTCTTTTAACATATTTCAAAATTTTAATAGA
* *
93672086 -TTAAATATTTAAAATTGATTATACTCAACGTTTTC-TTTAACATATTT-AAAATTTTAATATA
1 TTTAAATATTTAAAATTGATTATACTCAA-ATTTTCTTTTAACATATTTCAAAATTTTAATAGA
93672147 TTTAAAT
1 TTTAAAT
93672154 TTTTTTAAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
61 13 0.22
62 40 0.69
63 5 0.09
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.50
Consensus pattern (63 bp):
TTTAAATATTTAAAATTGATTATACTCAAATTTTCTTTTAACATATTTCAAAATTTTAATAGA
Found at i:93672157 original size:17 final size:17
Alignment explanation
Indices: 93672121--93672156 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
93672111 CAACGTTTTC
93672121 TTTAACATATTTAAAAT
1 TTTAACATATTTAAAAT
*
93672138 TTTAATATATTT-AAAT
1 TTTAACATATTTAAAAT
93672154 TTT
1 TTT
93672157 TTTAAGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTAACATATTTAAAAT
Found at i:93672468 original size:21 final size:22
Alignment explanation
Indices: 93672434--93672474 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
93672424 ACTTTCAAAA
*
93672434 TTAATTATACTTAACATTTTTT
1 TTAATTATACTTAAAATTTTTT
*
93672456 TTAA-TATATTTAAAATTTT
1 TTAATTATACTTAAAATTTT
93672475 AGAAAACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (22 bp):
TTAATTATACTTAAAATTTTTT
Found at i:93675672 original size:21 final size:20
Alignment explanation
Indices: 93675638--93675676 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
93675628 TTAATCAACC
93675638 ACTTTATATATAATAAAAAT
1 ACTTTATATATAATAAAAAT
*
93675658 ACTTATATTTATAATAAAA
1 ACTT-TATATATAATAAAA
93675677 TAGAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
ACTTTATATATAATAAAAAT
Found at i:93687041 original size:16 final size:17
Alignment explanation
Indices: 93687016--93687051 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
93687006 AAAACTTATG
*
93687016 TTTTCTATCCTTTCAAT
1 TTTTCTATCCTTCCAAT
93687033 TTTTC-ATCCTTCCAAT
1 TTTTCTATCCTTCCAAT
93687049 TTT
1 TTT
93687052 CTTTCTACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.17, C:0.25, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTCTATCCTTCCAAT
Found at i:93688073 original size:29 final size:30
Alignment explanation
Indices: 93688031--93688087 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
93688021 GAAAAAGTAA
*
93688031 GAAGACTTAATTTTTAACTTT-TCAAATAT
1 GAAGACTTAATTTTAAACTTTATCAAATAT
*
93688060 GAAGA-TTAAATTTTAAATTTTATCAAAT
1 GAAGACTT-AATTTTAAACTTTATCAAAT
93688088 TACATTGACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.08
29 16 0.67
30 6 0.25
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (30 bp):
GAAGACTTAATTTTAAACTTTATCAAATAT
Found at i:93691239 original size:3 final size:3
Alignment explanation
Indices: 93691233--93691260 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
93691223 TTCTATTCAT
93691233 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
93691261 AAAAACATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:93692029 original size:18 final size:18
Alignment explanation
Indices: 93691995--93692028 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
93691985 GTTTAATTGA
93691995 ATAAATTATTAAAAAAAC
1 ATAAATTATTAAAAAAAC
93692013 ATAAA-TATTAAAAAAA
1 ATAAATTATTAAAAAAA
93692029 AATATATGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
ATAAATTATTAAAAAAAC
Found at i:93692487 original size:4 final size:4
Alignment explanation
Indices: 93692480--93692513 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
93692470 TTATATTAAT
93692480 TAAA TAAAA TAAA TAAAA TAAA TAAA TAAA TAAA
1 TAAA T-AAA TAAA T-AAA TAAA TAAA TAAA TAAA
93692514 GACAAATGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:93692494 original size:9 final size:9
Alignment explanation
Indices: 93692480--93692513 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
93692470 TTATATTAAT
93692480 TAAATAAAA
1 TAAATAAAA
93692489 TAAATAAAA
1 TAAATAAAA
93692498 TAAAT-AAA
1 TAAATAAAA
93692506 TAAATAAA
1 TAAATAAA
93692514 GACAAATGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
TAAATAAAA
Found at i:93692496 original size:13 final size:13
Alignment explanation
Indices: 93692480--93692513 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
93692470 TTATATTAAT
93692480 TAAATAAAATAAA
1 TAAATAAAATAAA
93692493 TAAA-ATAAATAAA
1 TAAATA-AAATAAA
93692506 TAAATAAA
1 TAAATAAA
93692514 GACAAATGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.05
13 17 0.89
14 1 0.05
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAATAAAATAAA
Found at i:93694038 original size:18 final size:18
Alignment explanation
Indices: 93694017--93694067 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
93694007 TAACTAATTA
93694017 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
**
93694035 TTACTGAATAAACGACTG
1 TTACTGAATAATTGACTG
93694053 TTACTGAATAATTGA
1 TTACTGAATAATTGA
93694068 TTAATACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:93694075 original size:18 final size:18
Alignment explanation
Indices: 93694000--93694095 Score: 79
Period size: 18 Copynumber: 5.4 Consensus size: 18
93693990 TAAATAAAAG
* *
93694000 TACTGAATAACTAATTAT
1 TACTGAATAACTGATTGT
* *
93694018 TACTGAATAATTGACTGT
1 TACTGAATAACTGATTGT
*
93694036 TACTGAATAAAC-GACTGT
1 TACTGAAT-AACTGATTGT
* **
93694054 TACTGAATAATTGATTAA
1 TACTGAATAACTGATTGT
* *
93694072 TACTG-ATGACTGATTGA
1 TACTGAATAACTGATTGT
93694089 TACTGAA
1 TACTGAA
93694096 CAATAAAGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
17 16 0.25
18 45 0.71
19 2 0.03
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (18 bp):
TACTGAATAACTGATTGT
Found at i:93699215 original size:3 final size:3
Alignment explanation
Indices: 93699209--93699244 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
93699199 CGTCTTATGC
93699209 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
93699245 CGTTTTCGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:93699846 original size:99 final size:99
Alignment explanation
Indices: 93699716--93699919 Score: 372
Period size: 99 Copynumber: 2.1 Consensus size: 99
93699706 TGTCACCTCG
* *
93699716 AAATAAGAATTTGTTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAACGTGCCCT
1 AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCAAGAAAACGTGCCCT
*
93699781 AACTTATTGGGTTTTGATTTCTTTCGTTTACTCT
66 AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
*
93699815 AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCAAGAAAACGTGCTCT
1 AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCAAGAAAACGTGCCCT
93699880 AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
66 AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
93699914 AAATAA
1 AAATAA
93699920 TCGAATACCC
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 101 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.39
Consensus pattern (99 bp):
AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCAAGAAAACGTGCCCT
AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
Found at i:93708438 original size:51 final size:51
Alignment explanation
Indices: 93708362--93708599 Score: 314
Period size: 51 Copynumber: 4.8 Consensus size: 51
93708352 TTTGAAATTG
93708362 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
93708413 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
* **
93708464 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACT-GTTAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAA-GAAAA-TAAATAA
** **
93708516 GATAAA-T-A--A--TT-AAATAAATTA-AAACTGTTATAAGAAAATAAATAA
1 G-TAAAGTGAGGATTTTGAAATTGATTAGAAACT-AAATAAGAAAATAAATAA
93708561 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAA
93708600 TTAAAACTGT
Statistics
Matches: 160, Mismatches: 14, Indels: 26
0.80 0.07 0.13
Matches are distributed among these distances:
44 5 0.03
45 14 0.09
46 13 0.08
47 2 0.01
48 1 0.01
49 1 0.01
50 2 0.01
51 103 0.64
52 14 0.09
53 5 0.03
ACGTcount: A:0.52, C:0.03, G:0.16, T:0.29
Consensus pattern (51 bp):
GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
Found at i:93708583 original size:97 final size:97
Alignment explanation
Indices: 93708448--93708631 Score: 368
Period size: 97 Copynumber: 1.9 Consensus size: 97
93708438 TAGAAACTAA
93708448 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
1 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
93708513 TAAGATAAATAATTAAATAAATTAAAACTGTT
66 TAAGATAAATAATTAAATAAATTAAAACTGTT
93708545 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
1 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
93708610 TAAGATAAATAATTAAATAAAT
66 TAAGATAAATAATTAAATAAAT
93708632 CAGAAATTAA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 87 1.00
ACGTcount: A:0.54, C:0.03, G:0.12, T:0.30
Consensus pattern (97 bp):
ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
TAAGATAAATAATTAAATAAATTAAAACTGTT
Found at i:93709532 original size:7 final size:7
Alignment explanation
Indices: 93709520--93709546 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
93709510 AAATTAATAA
93709520 AATAAAT
1 AATAAAT
93709527 AATAAAT
1 AATAAAT
93709534 AATAAAT
1 AATAAAT
93709541 AATAAA
1 AATAAA
93709547 ATAAAACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AATAAAT
Found at i:93709567 original size:26 final size:26
Alignment explanation
Indices: 93709514--93709567 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
93709504 TAAGCTAAAT
*
93709514 TAATAAAATAAATAATAAATAATAAA
1 TAATAAAATAAATAATAAATAAAAAA
93709540 TAATAAAATAAA-ACA-AAATAAAATAA
1 TAATAAAATAAATA-ATAAATAAAA-AA
93709566 TA
1 TA
93709568 TCTTCCTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (26 bp):
TAATAAAATAAATAATAAATAAAAAA
Found at i:93714493 original size:9 final size:9
Alignment explanation
Indices: 93714479--93714521 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
93714469 TTCAAATCTC
93714479 TCAAAACCT
1 TCAAAACCT
*
93714488 TTAAAACCT
1 TCAAAACCT
*
93714497 TCAAAATCT
1 TCAAAACCT
*
93714506 CCCAAAACCT
1 -TCAAAACCT
93714516 TCAAAA
1 TCAAAA
93714522 GTATCATAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
9 20 0.74
10 7 0.26
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (9 bp):
TCAAAACCT
Found at i:93715487 original size:17 final size:17
Alignment explanation
Indices: 93715461--93715494 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93715451 TATATAATTG
*
93715461 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
93715478 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
93715495 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:93716700 original size:24 final size:24
Alignment explanation
Indices: 93716673--93716805 Score: 153
Period size: 24 Copynumber: 5.5 Consensus size: 24
93716663 ATGATTTTGC
93716673 CACTATGTGTGCGAATTTGAATGG
1 CACTATGTGTGCGAATTTGAATGG
*
93716697 CACTATGTGTGCGAATTTGTATGG
1 CACTATGTGTGCGAATTTGAATGG
* *
93716721 CACTATGTGTGCGGATTTGTATGG
1 CACTATGTGTGCGAATTTGAATGG
* * *
93716745 CACTATGTGTGCGGATTGGAATGT
1 CACTATGTGTGCGAATTTGAATGG
* * *
93716769 CAATATGTATGTGAATTACT-AA-GG
1 CACTATGTGTGCGAATT--TGAATGG
93716793 CACTATGTGTGCG
1 CACTATGTGTGCG
93716806 GGTTAACATG
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
24 91 0.98
25 2 0.02
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.35
Consensus pattern (24 bp):
CACTATGTGTGCGAATTTGAATGG
Found at i:93716795 original size:72 final size:72
Alignment explanation
Indices: 93716673--93716806 Score: 187
Period size: 72 Copynumber: 1.9 Consensus size: 72
93716663 ATGATTTTGC
* * * ** *
93716673 CACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTTGTATGGCACTATGTGTGCGGATT
1 CACTATGTGTGCGAATTGGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGGATT
93716738 TGTATGG
66 TGTATGG
* * *
93716745 CACTATGTGTGCGGATTGGAATGTCAATATGTATGTGAATTACTAAGGCACTATGTGTGCGG
1 CACTATGTGTGCGAATTGGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
93716807 GTTAACATGG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
72 53 1.00
ACGTcount: A:0.23, C:0.13, G:0.30, T:0.34
Consensus pattern (72 bp):
CACTATGTGTGCGAATTGGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGGATT
TGTATGG
Found at i:93716822 original size:72 final size:72
Alignment explanation
Indices: 93716673--93716823 Score: 176
Period size: 72 Copynumber: 2.1 Consensus size: 72
93716663 ATGATTTTGC
* * * ** *
93716673 CACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTTGTATGGCACTATGTGTGCGGATT
1 CACTATGTGTGCGAATTGGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGGATT
***
93716738 TGTATGG
66 AACATGG
* * * *
93716745 CACTATGTGTGCGGATTGGAATGTCAATATGTATGTGAATTACTAAGGCACTATGTGTGCGGGTT
1 CACTATGTGTGCGAATTGGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGGATT
93716810 AACATGG
66 AACATGG
*
93716817 TACTATG
1 CACTATG
93716824 GATATGAATT
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (72 bp):
CACTATGTGTGCGAATTGGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGGATT
AACATGG
Found at i:93717334 original size:69 final size:70
Alignment explanation
Indices: 93717203--93717334 Score: 203
Period size: 69 Copynumber: 1.9 Consensus size: 70
93717193 AGTTTATTAC
* * * * * *
93717203 TAATTAATTTGCTGTTGTGATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
93717268 TTAGT
66 TTAGT
93717273 TAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
93717335 GTTATGTGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
69 36 0.64
70 20 0.36
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (70 bp):
TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
TTAGT
Found at i:93717542 original size:39 final size:39
Alignment explanation
Indices: 93717490--93717675 Score: 264
Period size: 39 Copynumber: 4.7 Consensus size: 39
93717480 ATTTGATGTA
93717490 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
93717529 TATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** *
93717568 TATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
93717608 TATCCGGACTTAAGATCCGCAGACTTCGTGCTAGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
93717647 TATCCGGACTTAAGGTCCGCAGGCTTCGT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGT
93717676 ATTGGTACTA
Statistics
Matches: 130, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 96 0.74
40 34 0.26
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:93717651 original size:79 final size:79
Alignment explanation
Indices: 93717488--93717675 Score: 245
Period size: 79 Copynumber: 2.4 Consensus size: 79
93717478 ATATTTGATG
** * *
93717488 TATATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGG
1 TATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
* *
93717552 CTTCATGCTGGAAT
66 CTTCATGCTAGAAC
* * *
93717566 TGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
1 TATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
* *
93717631 CTTCGTGCTAGTAC
66 CTTCATGCTAGAAC
**
93717645 TATATCCGGACTT-AAGGTCCGCAGGCTTCGT
1 TATATCCGGACTTAAAGACCCGCAGGCTTCGT
93717676 ATTGGTACTA
Statistics
Matches: 93, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 26 0.28
79 67 0.72
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (79 bp):
TATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
CTTCATGCTAGAAC
Found at i:93717698 original size:118 final size:118
Alignment explanation
Indices: 93717490--93717712 Score: 320
Period size: 118 Copynumber: 1.9 Consensus size: 118
93717480 ATTTGATGTA
* * * * *
93717490 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT
1 TATCCGGACTTAAGATCCGCAGACTTCGTGCTAGAACTATATCCGGACTTAAGGTCCGCAGGCTT
* * *
93717555 CATGCTGGAATTGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
66 CATACTGGAACTATATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
*
93717608 TATCCGGACTTAAGATCCGCAGACTTCGTGCTAGTACTATATCCGGACTTAAGGTCCGCAGGCTT
1 TATCCGGACTTAAGATCCGCAGACTTCGTGCTAGAACTATATCCGGACTTAAGGTCCGCAGGCTT
* * * * *
93717673 CGTATTGGTACTATATCTGGGCTTAAAGTCCCGTAGGCTT
66 CATACTGGAACTATATCCGGGCTTAAAGACCCGTAGGCTT
93717713 TGTGTTGGTG
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
118 91 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (118 bp):
TATCCGGACTTAAGATCCGCAGACTTCGTGCTAGAACTATATCCGGACTTAAGGTCCGCAGGCTT
CATACTGGAACTATATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
Found at i:93720027 original size:19 final size:19
Alignment explanation
Indices: 93719982--93720026 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
93719972 CAGTATAAAA
93719982 ATATGTTTAATATTATTAAT
1 ATAT-TTTAATATTATTAAT
93720002 ATATTTTAAT-TTATT-AT
1 ATATTTTAATATTATTAAT
93720019 ATAATTTT
1 AT-ATTTT
93720027 TTTCTTGCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.17
18 10 0.42
19 6 0.25
20 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATATTTTAATATTATTAAT
Found at i:93722481 original size:17 final size:17
Alignment explanation
Indices: 93722461--93722521 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
93722451 ATTTCAAGAC
93722461 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* * ***
93722478 TTATTTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
93722497 CTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
93722515 TTATGTA
1 TTATGTA
93722522 GTAATTCAAA
Statistics
Matches: 31, Mismatches: 10, Indels: 6
0.66 0.21 0.13
Matches are distributed among these distances:
17 15 0.48
18 4 0.13
19 4 0.13
20 8 0.26
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.52
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:93722497 original size:37 final size:37
Alignment explanation
Indices: 93722456--93722561 Score: 185
Period size: 37 Copynumber: 2.9 Consensus size: 37
93722446 TGTTAATTTC
*
93722456 AAGACTTATGTAATGTTTTTAATTATTTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
93722493 AAGACTTATGTAATGTTTTTAATTATGTAGTAATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
93722530 AAGACTTATGTAATATTTTTAATTATGTAGTG
1 AAGACTTATGTAATGTTTTTAATTATGTAGTG
93722562 TAGTGATTCA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:93722555 original size:17 final size:17
Alignment explanation
Indices: 93722498--93722558 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
93722488 ATTCAAAGAC
*
93722498 TTATGTAATGTTTTTAA
1 TTATGTAATATTTTTAA
* ***
93722515 TTATGTAGTAATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
93722534 CTTATGTAATATTTTTAA
1 -TTATGTAATATTTTTAA
93722552 TTATGTA
1 TTATGTA
93722559 GTGTAGTGAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 15 0.47
18 4 0.12
19 5 0.16
20 8 0.25
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.51
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:93722583 original size:9 final size:9
Alignment explanation
Indices: 93722571--93722646 Score: 116
Period size: 9 Copynumber: 8.4 Consensus size: 9
93722561 GTAGTGATTC
*
93722571 AATTCGGTC
1 AATTCGGTT
93722580 AATTCGGTT
1 AATTCGGTT
*
93722589 AATTCGGTC
1 AATTCGGTT
93722598 AATTCGGTT
1 AATTCGGTT
93722607 AATTCGGTT
1 AATTCGGTT
*
93722616 AATTCGATT
1 AATTCGGTT
*
93722625 AATTCGGGT
1 AATTCGGTT
93722634 AATTCGGTT
1 AATTCGGTT
93722643 AATT
1 AATT
93722647 TTTAACCAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:93726778 original size:54 final size:54
Alignment explanation
Indices: 93726716--93726823 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
93726706 AAAGGGGCTA
*
93726716 AATTGACTTACCTATTAAACTTCTAAGCTTCAAAATCCCTATTTCCCCTTTTTC
1 AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
93726770 AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
1 AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
93726824 CTTTCTTTCC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.28, C:0.29, G:0.04, T:0.40
Consensus pattern (54 bp):
AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
Found at i:93726876 original size:16 final size:17
Alignment explanation
Indices: 93726855--93726887 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
93726845 CCTTTCTCCC
93726855 CTGTTTCGTT-TATTCT
1 CTGTTTCGTTCTATTCT
*
93726871 CTGTTTCTTTCTATTCT
1 CTGTTTCGTTCTATTCT
93726888 TTTTCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.06, C:0.21, G:0.09, T:0.64
Consensus pattern (17 bp):
CTGTTTCGTTCTATTCT
Found at i:93730905 original size:26 final size:26
Alignment explanation
Indices: 93730876--93730957 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
93730866 TGATACAAAT
*
93730876 TGATAATGGGTTAGGTAGATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93730902 TGATAATGGGTTAGGTAAACGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93730928 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93730954 TGAT
1 TGAT
93730958 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93737712 original size:33 final size:34
Alignment explanation
Indices: 93737653--93737720 Score: 111
Period size: 33 Copynumber: 2.0 Consensus size: 34
93737643 TGCATTAAGT
*
93737653 TAGATTTCTAGATTTTTTTTTTAGTAAAATCCCTG
1 TAGATTTCTAGA-TTTATTTTTAGTAAAATCCCTG
93737688 TAGATTTCTAGA-TTATTTTTAGTAAAATCCCTG
1 TAGATTTCTAGATTTATTTTTAGTAAAATCCCTG
93737721 CTCCTCTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 20 0.62
35 12 0.38
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.49
Consensus pattern (34 bp):
TAGATTTCTAGATTTATTTTTAGTAAAATCCCTG
Found at i:93738154 original size:12 final size:12
Alignment explanation
Indices: 93738133--93738163 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
93738123 AAATATAAAA
93738133 TAAT-ATTATAT
1 TAATAATTATAT
93738144 TAATAATTATAT
1 TAATAATTATAT
93738156 TAATAATT
1 TAATAATT
93738164 CGTAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TAATAATTATAT
Found at i:93738227 original size:29 final size:30
Alignment explanation
Indices: 93738179--93738236 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
93738169 AAATTAAATC
* * *
93738179 AAATTAAAATTTTATGTATAAATTTACACA
1 AAATTAAAATTTCATATATAAAATTACACA
93738209 AAATTAAAA-TTCATATATAAAATTACAC
1 AAATTAAAATTTCATATATAAAATTACAC
93738237 GTATATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36
Consensus pattern (30 bp):
AAATTAAAATTTCATATATAAAATTACACA
Found at i:93741765 original size:17 final size:18
Alignment explanation
Indices: 93741743--93741783 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
93741733 TATCAACTGT
93741743 AAAATG-AACA-GAAAATA
1 AAAATGAAACAGGAAAA-A
93741760 AAAATGAAACAGGAAAAA
1 AAAATGAAACAGGAAAAA
93741778 AAAATG
1 AAAATG
93741784 GTGCGCATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.27
18 11 0.50
19 5 0.23
ACGTcount: A:0.71, C:0.05, G:0.15, T:0.10
Consensus pattern (18 bp):
AAAATGAAACAGGAAAAA
Found at i:93750940 original size:5 final size:5
Alignment explanation
Indices: 93750930--93750954 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
93750920 TTAATTCGAT
93750930 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
93750955 ATCAGATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:93751391 original size:15 final size:14
Alignment explanation
Indices: 93751371--93751412 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
93751361 TCTGCCACTC
93751371 TTCTTTTCTTTTCTT
1 TTCTTTT-TTTTCTT
93751386 TTCTTTTTTTAT-TT
1 TTCTTTTTTT-TCTT
*
93751400 TTATTTTTTTTCT
1 TTCTTTTTTTTCT
93751413 CTTTTTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 1 0.04
14 15 0.62
15 8 0.33
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (14 bp):
TTCTTTTTTTTCTT
Found at i:93751433 original size:28 final size:24
Alignment explanation
Indices: 93751374--93751421 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
93751364 GCCACTCTTC
* *
93751374 TTTTCTTTTCTTTTCTTTTTTTAT
1 TTTTATTTTTTTTTCTTTTTTTAT
93751398 TTTTATTTTTTTTCTCTTTTTTTA
1 TTTTATTTTTTTT-TCTTTTTTTA
93751422 ATTTGTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.83
Consensus pattern (24 bp):
TTTTATTTTTTTTTCTTTTTTTAT
Found at i:93757835 original size:19 final size:20
Alignment explanation
Indices: 93757795--93757839 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
93757785 TGTGTCTTTC
93757795 TTTTTAAAACATTTATTTTT
1 TTTTTAAAACATTTATTTTT
* *
93757815 TTTTTAAATC-TTT-TTTAT
1 TTTTTAAAACATTTATTTTT
93757833 TTTTTAA
1 TTTTTAA
93757840 TTGACTGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 11 0.48
19 3 0.13
20 9 0.39
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTTAAAACATTTATTTTT
Found at i:93762198 original size:12 final size:12
Alignment explanation
Indices: 93762181--93762215 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
93762171 TCAAAGAAAA
93762181 AATAAAATGAAT
1 AATAAAATGAAT
*
93762193 AATAAAATAAAT
1 AATAAAATGAAT
93762205 AATAACAATGA
1 AATAA-AATGA
93762216 TAACAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.23
Consensus pattern (12 bp):
AATAAAATGAAT
Found at i:93762418 original size:3 final size:3
Alignment explanation
Indices: 93762410--93762443 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
93762400 AAAATGCATA
93762410 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
93762444 GTGTAACGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:93763937 original size:53 final size:52
Alignment explanation
Indices: 93763805--93763944 Score: 167
Period size: 52 Copynumber: 2.7 Consensus size: 52
93763795 GATATGTTCG
*
93763805 CCCGTATAAGACCATAGTTGGGCTATGGCATTGGTGCAATGTGATACATGTT
1 CCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGCAATGTGATACATGTT
* * **
93763857 CCCGCATAAGACCATAGCTGGGCTATGG-AGTCGGTGTGATGTGATA-ATGTGAT
1 CCCGTATAAGACCATAGTTGGGCTATGGCA-TCGGTGCAATGTGATACATGT--T
* * *
93763910 TCCGTATAAGACCATATTTGGGATATGGCATCGGT
1 CCCGTATAAGACCATAGTTGGGCTATGGCATCGGT
93763945 ATTATATGTG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
51 5 0.07
52 39 0.53
53 29 0.39
54 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (52 bp):
CCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGCAATGTGATACATGTT
Found at i:93766802 original size:46 final size:46
Alignment explanation
Indices: 93766752--93767020 Score: 243
Period size: 46 Copynumber: 5.8 Consensus size: 46
93766742 TGGTTGAGCA
93766752 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* **
93766798 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C--GT-GAAACGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AA-T--G
*
93766843 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
93766891 TCTGAACTCGTTGAGTTGAGTCCGAGTT--C--GT-GAAACGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AA-T--G
* *
93766936 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
93766984 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93767021 GCGGGTTACA
Statistics
Matches: 181, Mismatches: 20, Indels: 44
0.74 0.08 0.18
Matches are distributed among these distances:
41 8 0.04
42 6 0.03
43 2 0.01
44 2 0.01
45 2 0.01
46 89 0.49
47 53 0.29
48 2 0.01
49 2 0.01
50 1 0.01
51 6 0.03
52 8 0.04
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93766867 original size:47 final size:47
Alignment explanation
Indices: 93766798--93766966 Score: 197
Period size: 47 Copynumber: 3.6 Consensus size: 47
93766788 GATGCGAATG
93766798 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAACGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAACGTAACTAGGCA
* * **
93766845 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AA-T--G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C--GT-GAAACGTAACTAGGCA
*
93766891 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAACGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAACGTAACTAGGCA
*
93766938 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
93766967 ACTTATGGAT
Statistics
Matches: 100, Mismatches: 11, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
41 4 0.04
42 3 0.03
43 1 0.01
44 1 0.01
45 1 0.01
46 26 0.26
47 54 0.54
48 1 0.01
49 1 0.01
50 1 0.01
51 3 0.03
52 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAACGTAACTAGGCA
Found at i:93766908 original size:93 final size:93
Alignment explanation
Indices: 93766749--93767013 Score: 485
Period size: 93 Copynumber: 2.8 Consensus size: 93
93766739 GGATGGTTGA
*
93766749 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
93766814 TGAGTCCGAGTTCGTGAAACGTAACTAG
66 TGAGTCCGAGTTCGTGAAACGTAACTAG
*
93766842 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
93766907 TGAGTCCGAGTTCGTGAAACGTAACTAG
66 TGAGTCCGAGTTCGTGAAACGTAACTAG
* * *
93766935 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
93767000 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
93767014 CTTATGGGCG
Statistics
Matches: 166, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 166 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAACGTAACTAG
Found at i:93774248 original size:5 final size:5
Alignment explanation
Indices: 93774240--93774265 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
93774230 AAAAAAATAA
93774240 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
93774266 CAATTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:93794975 original size:22 final size:23
Alignment explanation
Indices: 93794930--93794980 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 23
93794920 TTAAAAAATA
*
93794930 AATTTATATTAATAAATTGAGATTT
1 AATTTATAATAATAAATT-AGA-TT
93794955 AATTTATAATAA-AAATT-GATT
1 AATTTATAATAATAAATTAGATT
93794976 AATTT
1 AATTT
93794981 TGAAATTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 7 0.28
22 2 0.08
24 5 0.20
25 11 0.44
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (23 bp):
AATTTATAATAATAAATTAGATT
Found at i:93795974 original size:23 final size:23
Alignment explanation
Indices: 93795944--93795991 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
93795934 TTTAAATAGA
*
93795944 TTTT-AAAATTGAATT-TATATTT
1 TTTTAAAAATT-AATTATATAATT
93795966 TTTTGAAAAATTAATTATATAATT
1 TTTT-AAAAATTAATTATATAATT
93795990 TT
1 TT
93795992 AATTATGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 4 0.18
23 4 0.18
24 14 0.64
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTTAAAAATTAATTATATAATT
Found at i:93795991 original size:22 final size:24
Alignment explanation
Indices: 93795948--93795991 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
93795938 AATAGATTTT
**
93795948 AAAATTGAATTTATATTTTTTTGA
1 AAAATTGAATTTATATAATTTTGA
93795972 AAAATT-AA-TTATATAATTTT
1 AAAATTGAATTTATATAATTTT
93795992 AATTATGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 2 0.11
24 6 0.33
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (24 bp):
AAAATTGAATTTATATAATTTTGA
Found at i:93796254 original size:19 final size:19
Alignment explanation
Indices: 93796226--93796269 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
93796216 TAAAGGATGT
* *
93796226 TTTTATTAATATATTAAAA
1 TTTTAATAATATAATAAAA
* *
93796245 TTTTAATAATTTAATATAA
1 TTTTAATAATATAATAAAA
93796264 TTTTAA
1 TTTTAA
93796270 AACTTTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTAATAATATAATAAAA
Found at i:93796276 original size:19 final size:18
Alignment explanation
Indices: 93796243--93796283 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
93796233 AATATATTAA
93796243 AATTTTAATAATTTAATAT
1 AATTTTAATAATTTAA-AT
93796262 AATTTTAA-AACTTTAAAT
1 AATTTTAATAA-TTTAAAT
93796280 AATT
1 AATT
93796284 CAATAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
AATTTTAATAATTTAAAT
Found at i:93796288 original size:28 final size:27
Alignment explanation
Indices: 93796236--93796303 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
93796226 TTTTATTAAT
* * *
93796236 ATATTAAAATTTTAATAATTTAATATA
1 ATATTAAAATTTAAATAATTCAATAAA
*
93796263 ATTTTAAAACTTTAAATAATTCAATAAA
1 ATATTAAAA-TTTAAATAATTCAATAAA
93796291 ATATTAAATATTT
1 ATATTAAA-ATTT
93796304 TACGTTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
27 8 0.24
28 25 0.74
29 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (27 bp):
ATATTAAAATTTAAATAATTCAATAAA
Found at i:93810686 original size:18 final size:17
Alignment explanation
Indices: 93810654--93810687 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
93810644 ATCCGATATG
*
93810654 TTTTATTTTACTTTTAC
1 TTTTATTTTAATTTTAC
93810671 TTTTATTTTTAATTTTA
1 TTTTA-TTTTAATTTTA
93810688 GTCATGTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTATTTTAATTTTAC
Found at i:93818753 original size:21 final size:22
Alignment explanation
Indices: 93818727--93818773 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
93818717 CTCTGCTCAA
*
93818727 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
93818748 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
93818770 ACTC
1 ACTC
93818774 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:93822965 original size:22 final size:23
Alignment explanation
Indices: 93822914--93822965 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
93822904 TTATTTAAAT
* *
93822914 TATTTT-ATAATTTATAAAATTT
1 TATTTTAATAATTAATAAAATTA
**
93822936 TAAATTAATAA-TAATAAAATTA
1 TATTTTAATAATTAATAAAATTA
93822958 TATTTTAA
1 TATTTTAA
93822966 CTCTCTTAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TATTTTAATAATTAATAAAATTA
Found at i:93826611 original size:30 final size:30
Alignment explanation
Indices: 93826570--93826651 Score: 128
Period size: 30 Copynumber: 2.7 Consensus size: 30
93826560 CATATTTATG
* *
93826570 GAAAATCAAAGATATTGGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATAATA
* *
93826600 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATAATA
93826630 GAAAGTCAAAGATATGGGTATC
1 GAAAGTCAAAGATATGGGTATC
93826652 GAGATATTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.26
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATAATA
Found at i:93831258 original size:15 final size:15
Alignment explanation
Indices: 93831238--93831345 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
93831228 TTTATGGAAA
93831238 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
93831253 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
93831267 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
93831283 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
93831297 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
93831313 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
93831327 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
93831343 ATC
1 ATC
93831346 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:93831275 original size:30 final size:30
Alignment explanation
Indices: 93831232--93831355 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
93831222 TCCATATTTA
* *
93831232 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
93831262 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
93831292 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
93831322 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
93831353 TGG
1 TGG
93831356 CATAATAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 80 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:93832348 original size:3 final size:3
Alignment explanation
Indices: 93832335--93832369 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
93832325 CTAAGATAAG
*
93832335 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
93832370 CTATAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:93835028 original size:25 final size:25
Alignment explanation
Indices: 93834981--93835028 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
93834971 TTCCATGTAC
* ** *
93834981 TCATACTTATTTCATTTATCTATCT
1 TCATAATTATTTCATACAACTATCT
93835006 TCATAATTATTTCATACAACTAT
1 TCATAATTATTTCATACAACTAT
93835029 TTTGTACATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (25 bp):
TCATAATTATTTCATACAACTATCT
Found at i:93835365 original size:46 final size:46
Alignment explanation
Indices: 93835184--93835365 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
93835174 TTTGACGTGA
* * * * *
93835184 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
93835230 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
93835276 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
93835322 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
93835366 AAAGCACACT
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 4 0.03
46 121 0.97
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:93837405 original size:11 final size:11
Alignment explanation
Indices: 93837364--93837406 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
93837354 TTATATACTA
* *
93837364 ATAAAATAATA
1 ATAAAATATTT
93837375 ATAAAATATCTT
1 ATAAAATAT-TT
93837387 ATTAAAATATTT
1 A-TAAAATATTT
93837399 ATAAAATA
1 ATAAAATA
93837407 ATATTTATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 15 0.54
12 5 0.18
13 8 0.29
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAAAATATTT
Found at i:93837447 original size:31 final size:30
Alignment explanation
Indices: 93837369--93837447 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 30
93837359 TACTAATAAA
* *
93837369 ATAATAAT-AAAATATCTTATTAAAATATTT
1 ATAA-AATAAAAATATCTAATTAAAATAATT
**
93837399 ATAAAATAATATTTATCTAATT-AAATAATT
1 ATAAAATAA-AAATATCTAATTAAAATAATT
93837429 ATAAAATATCAAAATATCT
1 ATAAAATA--AAAATATCT
93837448 CTAGCATCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
29 3 0.08
30 20 0.51
31 15 0.38
32 1 0.03
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (30 bp):
ATAAAATAAAAATATCTAATTAAAATAATT
Found at i:93842815 original size:46 final size:46
Alignment explanation
Indices: 93842748--93842873 Score: 155
Period size: 47 Copynumber: 2.7 Consensus size: 46
93842738 CTTCACATAA
* * * *
93842748 TGATGCCATAGCCCA-ACTATGGTCTTACACGAATCACATATCTCAC
1 TGATGCCATATCCCAGA-TATGGTCTTATACGAAGCACATATCACAC
* *
93842794 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
**
93842841 CAATGCCATATCCCAGATATGGTCTTATACGAA
1 TGATGCCATATCCCAGATATGGTCTTATACGAA
93842874 AATCACTTGT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 28 0.41
47 41 0.59
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (46 bp):
TGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:93842924 original size:31 final size:31
Alignment explanation
Indices: 93842889--93843068 Score: 265
Period size: 31 Copynumber: 5.8 Consensus size: 31
93842879 CTTGTCACTT
*
93842889 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
93842920 GTAGCCGGAA-CTACCATTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
* *
93842951 GTAGCCGGAGCTATCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
93842982 GTAGCCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
93843013 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
93843044 GTAGCTGAAGCTATCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
93843069 TATTATTTGT
Statistics
Matches: 135, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
30 5 0.04
31 125 0.93
32 5 0.04
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:93843150 original size:50 final size:51
Alignment explanation
Indices: 93843044--93843170 Score: 186
Period size: 50 Copynumber: 2.5 Consensus size: 51
93843034 CACTGATCAG
* * * *
93843044 GTAGCTGAAGCTATCACTTTTCACTTATTATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTATCATTTGTCATTGATCAAATAAGT
*
93843095 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTATCA-TTTGTCATTGATCAAATAAGT
93843145 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
93843171 GTTGCCATGG
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTATCATTTGTCATTGATCAAATAAGT
Found at i:93845657 original size:15 final size:15
Alignment explanation
Indices: 93845637--93845704 Score: 59
Period size: 15 Copynumber: 4.4 Consensus size: 15
93845627 ACACTACAAA
93845637 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
93845652 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
93845669 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
*
93845686 ATA-TTAATATTAA-
1 ATATTTATTATTAAT
93845699 ATATTT
1 ATATTT
93845705 TCAATAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.25
15 12 0.27
16 1 0.02
17 7 0.16
18 1 0.02
19 9 0.20
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:93845754 original size:16 final size:16
Alignment explanation
Indices: 93845723--93845759 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
93845713 ATGTGAATAA
93845723 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
93845739 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
93845755 TATTA
1 TATTA
93845760 AAATAAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:93845811 original size:22 final size:22
Alignment explanation
Indices: 93845771--93845826 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
93845761 AATAAACCTG
*
93845771 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
93845791 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
93845813 TATTAATAATTTAT
1 AAATAATAAATTAT
93845827 TATAAGATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:93853257 original size:20 final size:20
Alignment explanation
Indices: 93853234--93853271 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93853224 AATATTTTGT
*
93853234 ATAATTATCTAAAATATTAG
1 ATAATTACCTAAAATATTAG
*
93853254 ATAATTACCTAAACTATT
1 ATAATTACCTAAAATATT
93853272 TCAATATCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (20 bp):
ATAATTACCTAAAATATTAG
Found at i:93854628 original size:60 final size:60
Alignment explanation
Indices: 93854544--93854662 Score: 186
Period size: 60 Copynumber: 2.0 Consensus size: 60
93854534 ATACTAAACT
* * * *
93854544 AAACACAACAATTTATAACTTAATCCTAAATTACTAATAACTTAATTTTAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
93854604 AAACACGAAAAATTT-TAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACAC-AAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
93854663 TAAAAAATTA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 47 0.87
61 7 0.13
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.34
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:93855028 original size:22 final size:23
Alignment explanation
Indices: 93854973--93855031 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 23
93854963 TTTAAATATT
93854973 TTTAATA-AAAATAAAAAATAATA
1 TTTAATATAAAA-AAAAAATAATA
* *
93854996 TTTTATTTAAAAAACAAAA-AA-A
1 TTTAATATAAAAAA-AAAATAATA
93855018 TTTAATATAAAAAA
1 TTTAATATAAAAAA
93855032 TTAATTCACA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 13 0.43
23 9 0.30
24 8 0.27
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
TTTAATATAAAAAAAAAATAATA
Found at i:93866620 original size:16 final size:16
Alignment explanation
Indices: 93866587--93866620 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
93866577 TAGAATTGTT
* *
93866587 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
93866603 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
93866619 AA
1 AA
93866621 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:93869441 original size:21 final size:21
Alignment explanation
Indices: 93869415--93869455 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
93869405 AGACGAGCAA
* *
93869415 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
93869436 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
93869456 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:93871387 original size:16 final size:16
Alignment explanation
Indices: 93871354--93871387 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
93871344 GGAGATTGTT
* *
93871354 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
93871370 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
93871386 AA
1 AA
93871388 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:93875077 original size:5 final size:5
Alignment explanation
Indices: 93875062--93875105 Score: 63
Period size: 5 Copynumber: 8.8 Consensus size: 5
93875052 TTATTTAAGA
*
93875062 ATTATT ATTAT ATTAT ATTAT AATAT ATTAT ATTAT ATTA- ATTA
1 ATTA-T ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTA
93875106 AAACATAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 4 0.11
5 28 0.78
6 4 0.11
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
ATTAT
Found at i:93875134 original size:21 final size:20
Alignment explanation
Indices: 93875112--93875151 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
93875102 ATTAAAACAT
93875112 AAAGTAAATAAACAAAAGAATA
1 AAAG-AAATAAA-AAAAGAATA
93875134 AAAGAAATAAAAAAAGAA
1 AAAGAAATAAAAAAAGAA
93875152 AGGATAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.78, C:0.03, G:0.10, T:0.10
Consensus pattern (20 bp):
AAAGAAATAAAAAAAGAATA
Found at i:93877913 original size:51 final size:51
Alignment explanation
Indices: 93877853--93878026 Score: 278
Period size: 51 Copynumber: 3.4 Consensus size: 51
93877843 TTTGAGTACT
*
93877853 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* * * *
93877904 TCTGATCAGTGATAAGTGACAAATGATAAGTGGTAG-CTTAGCTACTCTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* *
93877954 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTATACTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
93878005 TCTGATCAGTGACAAGTGATAA
1 TCTGATCAGTGACAAGTGATAA
93878027 ATGCGATCAG
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
50 45 0.41
51 66 0.59
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.30
Consensus pattern (51 bp):
TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:93882889 original size:51 final size:51
Alignment explanation
Indices: 93882829--93883002 Score: 287
Period size: 51 Copynumber: 3.4 Consensus size: 51
93882819 TTTGAGTACT
*
93882829 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* * * *
93882880 TCTGATCAGTGATAAGTGACAAATGATAAGTGGTAG-CTTAGCTACTCTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
*
93882930 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
93882981 TCTGATCAGTGACAAGTGATAA
1 TCTGATCAGTGACAAGTGATAA
93883003 ATGTGATCAG
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 45 0.40
51 67 0.60
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (51 bp):
TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:93884615 original size:15 final size:16
Alignment explanation
Indices: 93884595--93884625 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
93884585 TGAAACCCTC
93884595 TTTATTT-TTTTATTT
1 TTTATTTATTTTATTT
93884610 TTTATTTATTTTATTT
1 TTTATTTATTTTATTT
93884626 AAAAAAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTATTTATTTTATTT
Found at i:93885041 original size:2 final size:2
Alignment explanation
Indices: 93885034--93885064 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
93885024 CCTTTAAATC
*
93885034 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
93885065 TAACATTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:93886242 original size:132 final size:132
Alignment explanation
Indices: 93885956--93886226 Score: 400
Period size: 132 Copynumber: 2.1 Consensus size: 132
93885946 CACAATTACT
*
93885956 TAAAAATTCTTGAAAACGAAGGCGAGATTTGATATTTGGCAACTCGCGGAATCGTGCCCTAACGT
1 TAAAAATTCTTGAAAACGAAGGCGAGACTTGATATTTGGCAACTCGCGGAATCGTGCCCTAACGT
* * *
93886021 GCTAGATTTCAATTTCGCGTTTGCTCAAAATAATCAAATGTCCCTTCAAAATTTCATCCATGTCT
66 GCTAGATTGCAATTCCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCATCCATGTCT
93886086 TC
131 TC
* * *
93886088 TAAAAATTCTTGAAAACGAAGGCGAGGCTTGATATTTGGCAATTCGTGGAATCGTGCCCTAACGT
1 TAAAAATTCTTGAAAACGAAGGCGAGACTTGATATTTGGCAACTCGCGGAATCGTGCCCTAACGT
* * * * ** *
93886153 GTTGGGTTGCAATTCCTCGTTTGCTCAAAATGTTCAAATATCCCTTCAAAATTTTA-CTCATGTC
66 GCTAGATTGCAATTCCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCATC-CATGTC
93886217 TTC
130 TTC
93886220 TAAAAAT
1 TAAAAAT
93886227 CCTTTAAGAC
Statistics
Matches: 124, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
131 1 0.01
132 123 0.99
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (132 bp):
TAAAAATTCTTGAAAACGAAGGCGAGACTTGATATTTGGCAACTCGCGGAATCGTGCCCTAACGT
GCTAGATTGCAATTCCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCATCCATGTCT
TC
Found at i:93886263 original size:132 final size:131
Alignment explanation
Indices: 93885956--93886292 Score: 352
Period size: 132 Copynumber: 2.6 Consensus size: 131
93885946 CACAATTACT
* * * * * * * *
93885956 TAAAAATTCTTGAAAACGAAGGCGAGATTTGATATTTGGCAACTCGCGGAATCGTGCCCTAACGT
1 TAAAAATCCTTGAAAACAAAGGCAAGACTCGATATTTGACAATTC-AGGAATCGTGCCCTAACGT
* * * * *
93886021 GCTAGATTTCAATTTCGCGTTTGCTCAAAATAATCAAATGTCCCTTCAAAATTTCATCCATGTCT
65 GCTGGGTTGCAATTCCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCATCCATGTCT
93886086 TC
130 TC
* * * * * * *
93886088 TAAAAATTCTTGAAAACGAAGGCGAGGCTTGATATTTGGCAATTCGTGGAATCGTGCCCTAACGT
1 TAAAAATCCTTGAAAACAAAGGCAAGACTCGATATTTGACAATTC-AGGAATCGTGCCCTAACGT
* * ** *
93886153 GTTGGGTTGCAATTCCTCGTTTGCTCAAAATGTTCAAATATCCCTTCAAAATTTTA-CTCATGTC
65 GCTGGGTTGCAATTCCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCATC-CATGTC
93886217 TTC
129 TTC
* * * * * * *
93886220 TAAAAATCCTTTAAGACAAAGGCAATACTCGGTGTTTGACAATTCAGGAATCATGCCCTATCGTG
1 TAAAAATCCTTGAAAACAAAGGCAAGACTCGATATTTGACAATTCAGGAATCGTGCCCTAACGTG
93886285 CTGGGTTG
66 CTGGGTTG
93886293 TGATTTCTTG
Statistics
Matches: 175, Mismatches: 29, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
131 25 0.14
132 150 0.86
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (131 bp):
TAAAAATCCTTGAAAACAAAGGCAAGACTCGATATTTGACAATTCAGGAATCGTGCCCTAACGTG
CTGGGTTGCAATTCCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCATCCATGTCTT
C
Found at i:93886373 original size:131 final size:131
Alignment explanation
Indices: 93886210--93886452 Score: 278
Period size: 131 Copynumber: 1.9 Consensus size: 131
93886200 AAAATTTTAC
* * *
93886210 TCATGTCTTCTAAAAATCCTTTAAGACAAAGGCAATACTCGGTGTTTGACAATTCAG-GAATCAT
1 TCATGTCTTCTAAAAATCCTTTAAAACAAAGGCAATACTCGATGTTTGACAATT-AGAGAATCAG
* * *
93886274 GCCCTATCGTGCTGGGTTGTGATTTCTT-GTTTGTTCAAAGCAATCGAATATTCCTTTAGGTTTT
65 GCCCTATCGTGCTGGGTTGCGATTT-TTCATTTGTTCAAAACAATCGAATATTCCTTTAGGTTTT
93886338 CAT
129 CAT
* * ** * * * *
93886341 TCATGT-TTACTAAAAA-CCTTTCAAAACGAAGGCGATGTTCGATGTTTGGCGATTTGAGAATCG
1 TCATGTCTT-CTAAAAATCCTTT-AAAACAAAGGCAATACTCGATGTTTGACAATTAGAGAATCA
* *
93886404 GGTCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAAAACAATCGAA
64 GGCCCTATCGTGCTGGGTTGCGATTTTTCATTTGTTCAAAACAATCGAA
93886453 GATCCCTTCG
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
130 10 0.11
131 82 0.89
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (131 bp):
TCATGTCTTCTAAAAATCCTTTAAAACAAAGGCAATACTCGATGTTTGACAATTAGAGAATCAGG
CCCTATCGTGCTGGGTTGCGATTTTTCATTTGTTCAAAACAATCGAATATTCCTTTAGGTTTTCA
T
Found at i:93887467 original size:39 final size:32
Alignment explanation
Indices: 93887418--93887499 Score: 92
Period size: 39 Copynumber: 2.3 Consensus size: 32
93887408 TATAAAATAA
*
93887418 ATATTATATATTATATTAACTTAATATTTAAGTATTAAT
1 ATATAATATATTATATT-A-TT-ATA-TT-A-TATT-AT
93887457 ATATAATATATTATATTATTATATTATATTAT
1 ATATAATATATTATATTATTATATTATATTAT
93887489 ATATAATATAT
1 ATATAATATAT
93887500 AAAACATAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
32 13 0.31
33 4 0.10
34 1 0.02
35 2 0.05
36 3 0.07
37 2 0.05
38 1 0.02
39 16 0.38
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (32 bp):
ATATAATATATTATATTATTATATTATATTAT
Found at i:93887500 original size:7 final size:7
Alignment explanation
Indices: 93887439--93887501 Score: 53
Period size: 7 Copynumber: 9.4 Consensus size: 7
93887429 TATATTAACT
*
93887439 TAATATT
1 TAATATA
93887446 TAAGTAT-
1 TAA-TATA
93887453 TAATATA
1 TAATATA
93887460 TAATATA
1 TAATATA
93887467 T--TATA
1 TAATATA
*
93887472 TTAT-TA
1 TAATATA
*
93887478 TATTATA
1 TAATATA
*
93887485 TTATATA
1 TAATATA
93887492 TAATATA
1 TAATATA
93887499 TAA
1 TAA
93887502 AACATAAAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
5 5 0.11
6 7 0.15
7 31 0.67
8 3 0.07
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (7 bp):
TAATATA
Found at i:93887514 original size:5 final size:5
Alignment explanation
Indices: 93887506--93887530 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
93887496 ATATAAAACA
93887506 TAAAG TAAAG TAAAG TAAAG TAAAG
1 TAAAG TAAAG TAAAG TAAAG TAAAG
93887531 AGACAGAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
TAAAG
Found at i:93887602 original size:6 final size:6
Alignment explanation
Indices: 93887591--93887616 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
93887581 AAAAAGGGAG
93887591 AAAGAA AAAGAA AAAGAA AAAGAA AA
1 AAAGAA AAAGAA AAAGAA AAAGAA AA
93887617 TTTGGGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:93888722 original size:22 final size:22
Alignment explanation
Indices: 93888693--93888749 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
93888683 TAGCACGTTA
93888693 AGTGCTCTCTGTTTAGCACATCT
1 AGTGCTCTCTGTTTAGCAC-TCT
* *
93888716 -GTGCTCTCTGTATAGCACTTT
1 AGTGCTCTCTGTTTAGCACTCT
93888737 AGTGCTCTCTGTT
1 AGTGCTCTCTGTT
93888750 CGTTTGTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.07
22 28 0.93
ACGTcount: A:0.14, C:0.25, G:0.19, T:0.42
Consensus pattern (22 bp):
AGTGCTCTCTGTTTAGCACTCT
Found at i:93890339 original size:19 final size:20
Alignment explanation
Indices: 93890303--93890340 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
93890293 CACGAATAGT
93890303 AGGGAAAGAAAGAAGAAAAA
1 AGGGAAAGAAAGAAGAAAAA
*
93890323 AGGGAAATAAA-AAGAAAA
1 AGGGAAAGAAAGAAGAAAA
93890341 GAAGAGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (20 bp):
AGGGAAAGAAAGAAGAAAAA
Found at i:93892862 original size:5 final size:5
Alignment explanation
Indices: 93892814--93892859 Score: 58
Period size: 5 Copynumber: 9.4 Consensus size: 5
93892804 CTTTATGTTT
* * *
93892814 TAAT- TAATA TAATA TAATA TAATA TAATA TATTA TATTA TATTA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA
93892860 TTAACATAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
4 4 0.10
5 36 0.90
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (5 bp):
TAATA
Found at i:93894764 original size:20 final size:20
Alignment explanation
Indices: 93894739--93894776 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93894729 ATATGAAAAT
*
93894739 TAAATTAATTCATTTAATAA
1 TAAATTAATTAATTTAATAA
*
93894759 TAAATTCATTAATTTAAT
1 TAAATTAATTAATTTAAT
93894777 CTAACCCCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
TAAATTAATTAATTTAATAA
Found at i:93896568 original size:5 final size:5
Alignment explanation
Indices: 93896548--93896587 Score: 62
Period size: 5 Copynumber: 7.8 Consensus size: 5
93896538 TTATTTAAGA
*
93896548 ATTATT ATTAT TTTAT ATTAT ATTAT ATTAT ATTAT ATTA
1 ATTA-T ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTA
93896588 AAACGTAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 28 0.88
6 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
ATTAT
Found at i:93898113 original size:46 final size:45
Alignment explanation
Indices: 93898060--93898328 Score: 267
Period size: 46 Copynumber: 5.8 Consensus size: 45
93898050 TATTTGGGCA
93898060 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
93898106 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
93898153 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
93898199 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
93898246 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
93898292 CCCGAACTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93898329 GCGGGTTACA
Statistics
Matches: 180, Mismatches: 29, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 2 0.01
46 96 0.53
47 64 0.36
48 2 0.01
49 6 0.03
50 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:93898175 original size:47 final size:47
Alignment explanation
Indices: 93898056--93898274 Score: 220
Period size: 47 Copynumber: 4.7 Consensus size: 47
93898046 AGGATATTTG
*** *
93898056 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
*
93898099 GCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
* *** *
93898149 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
*
93898192 GCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
*
93898242 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
93898275 ACTTGTGGAT
Statistics
Matches: 143, Mismatches: 19, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
43 2 0.01
44 5 0.03
45 1 0.01
46 61 0.43
47 64 0.45
48 2 0.01
49 6 0.04
50 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:93898215 original size:93 final size:93
Alignment explanation
Indices: 93898056--93898321 Score: 487
Period size: 93 Copynumber: 2.9 Consensus size: 93
93898046 AGGATATTTG
*
93898056 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
93898121 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
93898149 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
93898214 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
93898242 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAACTCATTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
93898307 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
93898322 CTTATGGGCG
Statistics
Matches: 168, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 168 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:93905083 original size:16 final size:17
Alignment explanation
Indices: 93905062--93905094 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
93905052 AAATTAAAAT
93905062 ATTTAAAATT-TTTAAA
1 ATTTAAAATTATTTAAA
93905078 ATTTAAAATTATTTAAA
1 ATTTAAAATTATTTAAA
93905095 TTCATTAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTTAAAATTATTTAAA
Found at i:93906434 original size:15 final size:16
Alignment explanation
Indices: 93906414--93906443 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93906404 AAAGTTACTT
93906414 AAAA-TTAAAAATAAA
1 AAAATTTAAAAATAAA
93906429 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
93906444 TTTAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATTTAAAAATAAA
Found at i:93906607 original size:19 final size:19
Alignment explanation
Indices: 93906585--93906622 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
93906575 TTATGTTGTC
*
93906585 TTTTTATTTATTTATTTTAT
1 TTTTTA-TTATTAATTTTAT
93906605 TTTTTATTATTAATTTTA
1 TTTTTATTATTAATTTTA
93906623 AAAAATTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTATTATTAATTTTAT
Found at i:93906642 original size:16 final size:17
Alignment explanation
Indices: 93906610--93906662 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 17
93906600 TTTATTTTTT
*
93906610 ATTATTAATTTTAAAAAA
1 ATTATT-ATATTAAAAAA
* *
93906628 TTTGTTATA-TAAAAAA
1 ATTATTATATTAAAAAA
93906644 ATTATTATATTAAAAAA
1 ATTATTATATTAAAAAA
93906661 AT
1 AT
93906663 ATAAAAAAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 14 0.48
17 11 0.38
18 4 0.14
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
ATTATTATATTAAAAAA
Found at i:93906644 original size:17 final size:18
Alignment explanation
Indices: 93906622--93906662 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
93906612 TATTAATTTT
*
93906622 AAAAAATTTGTTATA-TA
1 AAAAAATTTATTATATTA
93906639 AAAAAA-TTATTATATTA
1 AAAAAATTTATTATATTA
93906656 AAAAAAT
1 AAAAAAT
93906663 ATAAAAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAAAATTTATTATATTA
Done.