Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 29 of 311
Found at i:8317883 original size:34 final size:34
Alignment explanation
Indices: 8317789--8317887 Score: 94
Period size: 34 Copynumber: 2.9 Consensus size: 34
8317779 AATATGACGC
* * * *
8317789 ATTGGCGTTGTGGCGAGATGTTGATTGAATGATGT
1 ATTGGTGTTGTGGCGAGATATTAATTGAA-GAAGT
** *
8317824 ATCAGTGTTGTGGTG-GA-ATGATAATTGAAGAAGT
1 ATTGGTGTTGTGGCGAGATAT--TAATTGAAGAAGT
8317858 ATTGGTGTTGTGGCGAGATATTAATTGAAG
1 ATTGGTGTTGTGGCGAGATATTAATTGAAG
8317888 GAGGACTAGA
Statistics
Matches: 50, Mismatches: 10, Indels: 9
0.72 0.14 0.13
Matches are distributed among these distances:
33 1 0.02
34 27 0.54
35 20 0.40
36 2 0.04
ACGTcount: A:0.26, C:0.04, G:0.34, T:0.35
Consensus pattern (34 bp):
ATTGGTGTTGTGGCGAGATATTAATTGAAGAAGT
Found at i:8320889 original size:50 final size:50
Alignment explanation
Indices: 8320835--8320936 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
8320825 CTGATCGATA
*
8320835 TGGGTTCTTGAAGTTGGTTTAAGGAAAAAACTTTTCTGTTTCTATCTTCT
1 TGGGTTCTTGAAGTTGGTTTAAGGAAAAAAATTTTCTGTTTCTATCTTCT
8320885 TGGGTTCTTGAAGTTGGTTTAAGGAAAAAAATTTTCTGTTTCTATCTTCT
1 TGGGTTCTTGAAGTTGGTTTAAGGAAAAAAATTTTCTGTTTCTATCTTCT
8320935 TG
1 TG
8320937 TTTTTGTATG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.23, C:0.11, G:0.21, T:0.46
Consensus pattern (50 bp):
TGGGTTCTTGAAGTTGGTTTAAGGAAAAAAATTTTCTGTTTCTATCTTCT
Found at i:8323324 original size:12 final size:12
Alignment explanation
Indices: 8323307--8323337 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
8323297 TAAGGGAAGA
8323307 GAGCCCAAGCAT
1 GAGCCCAAGCAT
8323319 GAGCCCAAGCAT
1 GAGCCCAAGCAT
8323331 GAGCCCA
1 GAGCCCA
8323338 GGTATGTCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.35, G:0.26, T:0.06
Consensus pattern (12 bp):
GAGCCCAAGCAT
Found at i:8327460 original size:26 final size:24
Alignment explanation
Indices: 8327430--8327479 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
8327420 AAATAAAAAA
*
8327430 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
8327456 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
8327480 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:8327499 original size:21 final size:21
Alignment explanation
Indices: 8327450--8327508 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
8327440 ATAATAAATC
*
8327450 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
8327470 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
8327492 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
8327509 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:8328050 original size:3 final size:3
Alignment explanation
Indices: 8328042--8328080 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
8328032 TTGTGTCTAG
8328042 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8328081 ACTTGGAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8331031 original size:29 final size:31
Alignment explanation
Indices: 8330985--8331046 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 31
8330975 TATAATTATA
*
8330985 TAATTAGATAATTATTATT-TATTTAATATTT
1 TAATAAGATAATTATTATTAT-TTTAATATTT
*
8331016 TAATAAGAT-ATT-TTATTATTTTATTATTT
1 TAATAAGATAATTATTATTATTTTAATATTT
8331045 TA
1 TA
8331047 TTTAGTCTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 16 0.57
30 4 0.14
31 8 0.29
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (31 bp):
TAATAAGATAATTATTATTATTTTAATATTT
Found at i:8331035 original size:8 final size:8
Alignment explanation
Indices: 8331024--8331048 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8331014 TTTAATAAGA
8331024 TATTTTAT
1 TATTTTAT
8331032 TATTTTAT
1 TATTTTAT
8331040 TATTTTAT
1 TATTTTAT
8331048 T
1 T
8331049 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:8335705 original size:46 final size:44
Alignment explanation
Indices: 8335601--8335708 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
8335591 TGTCTTTGAC
** * * *
8335601 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
8335645 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
8335691 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
8335709 TTTCTGTTTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:8342874 original size:44 final size:45
Alignment explanation
Indices: 8342821--8342923 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
8342811 TGTCTTTGAC
* * *
8342821 ATGGACTTACATGAATTATTCATGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCATGTCTCCAAAGCCATATTATAAT
** * *
8342865 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCATGTCTCCAAAGCCATA-TTATAAT
8342911 ATGGACTTACATG
1 ATGGACTTACATG
8342924 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCATGTCTCCAAAGCCATATTATAAT
Found at i:8342922 original size:46 final size:44
Alignment explanation
Indices: 8342843--8342928 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
8342833 GAATTATTCA
*
8342843 TGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAATCC
1 TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
*
8342887 TGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
8342929 TTTCTGTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 15 0.39
46 23 0.61
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (44 bp):
TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
Found at i:8344676 original size:3 final size:3
Alignment explanation
Indices: 8344668--8344705 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8344658 TAACCATAGC
8344668 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8344706 CAATTTCAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8344860 original size:15 final size:15
Alignment explanation
Indices: 8344842--8344877 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
8344832 ATATGCATAT
8344842 AATATATATACACAC
1 AATATATATACACAC
8344857 -A-ATATATACACAC
1 AATATATATACACAC
8344870 AAT-TATAT
1 AATATATAT
8344878 CATTTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.31
Consensus pattern (15 bp):
AATATATATACACAC
Found at i:8344861 original size:13 final size:13
Alignment explanation
Indices: 8344845--8344876 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
8344835 TGCATATAAT
8344845 ATATATACACACA
1 ATATATACACACA
8344858 ATATATACACACA
1 ATATATACACACA
8344871 AT-TATA
1 ATATATA
8344877 TCATTTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (13 bp):
ATATATACACACA
Found at i:8349491 original size:7 final size:7
Alignment explanation
Indices: 8349479--8349525 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
8349469 AGTTCCTTAT
8349479 TTTTTAA
1 TTTTTAA
8349486 TTTTTAA
1 TTTTTAA
*
8349493 TTTTTTA
1 TTTTTAA
*
8349500 TTTTAAA
1 TTTTTAA
*
8349507 TTTTAAA
1 TTTTTAA
*
8349514 TTTTAAA
1 TTTTTAA
8349521 TTTTT
1 TTTTT
8349526 TTGAATATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTTTAA
Found at i:8349496 original size:14 final size:14
Alignment explanation
Indices: 8349479--8349525 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
8349469 AGTTCCTTAT
*
8349479 TTTTTAATTTTTAA
1 TTTTTAATTTTAAA
*
8349493 TTTTTTATTTTAAA
1 TTTTTAATTTTAAA
*
8349507 TTTTAAATTTTAAA
1 TTTTTAATTTTAAA
8349521 TTTTT
1 TTTTT
8349526 TTGAATATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTAATTTTAAA
Found at i:8350236 original size:21 final size:21
Alignment explanation
Indices: 8350212--8350252 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8350202 TTAACCTTGA
*
8350212 ACCCCTAACCCTTAACCCCCG
1 ACCCCTAACCCTTAAACCCCG
*
8350233 ACCCCTAAGCCTTAAACCCC
1 ACCCCTAACCCTTAAACCCC
8350253 TAAAGCTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.54, G:0.05, T:0.15
Consensus pattern (21 bp):
ACCCCTAACCCTTAAACCCCG
Found at i:8350251 original size:15 final size:15
Alignment explanation
Indices: 8350233--8350279 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
8350223 TTAACCCCCG
8350233 ACCCCTAAGCCTTAA
1 ACCCCTAAGCCTTAA
*
8350248 ACCCCTAAAG-CTCAA
1 ACCCCT-AAGCCTTAA
*
8350263 ACCCC-AACCCTTAA
1 ACCCCTAAGCCTTAA
8350277 ACC
1 ACC
8350280 ATAAACCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 2 0.07
14 7 0.26
15 15 0.56
16 3 0.11
ACGTcount: A:0.36, C:0.45, G:0.04, T:0.15
Consensus pattern (15 bp):
ACCCCTAAGCCTTAA
Found at i:8350286 original size:7 final size:7
Alignment explanation
Indices: 8350274--8350390 Score: 67
Period size: 7 Copynumber: 16.4 Consensus size: 7
8350264 CCCCAACCCT
8350274 TAAACCA
1 TAAACCA
8350281 TAAACCA
1 TAAACCA
8350288 TAAACCA
1 TAAACCA
* *
8350295 TAATCCC
1 TAAACCA
8350302 TAAACCCA
1 TAAA-CCA
*
8350310 TAATCCA
1 TAAACCA
**
8350317 TAAACTT
1 TAAACCA
8350324 TAAA--A
1 TAAACCA
8350329 TAGTAACTCA
1 TA--AAC-CA
*
8350339 TAAACCT
1 TAAACCA
*
8350346 TAAACCC
1 TAAACCA
*
8350353 TTAACCA
1 TAAACCA
* *
8350360 TATACCC
1 TAAACCA
*
8350367 TAAATCA
1 TAAACCA
*
8350374 TAAACCC
1 TAAACCA
*
8350381 TAAACTA
1 TAAACCA
8350388 TAA
1 TAA
8350391 TGATAATTAA
Statistics
Matches: 81, Mismatches: 23, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
5 2 0.02
7 68 0.84
8 8 0.10
10 3 0.04
ACGTcount: A:0.48, C:0.27, G:0.01, T:0.24
Consensus pattern (7 bp):
TAAACCA
Found at i:8350847 original size:39 final size:40
Alignment explanation
Indices: 8350763--8350868 Score: 119
Period size: 39 Copynumber: 2.7 Consensus size: 40
8350753 AATTTTTTGC
* *
8350763 GGCGTTTTTTTAAAAAGCGTTGCTAAAGGTTACCTATAGCA
1 GGCG-TTTTTTAAAAAGCGCTGCTAAAGCTTACCTATAGCA
* * *
8350804 -GCGTTTTTTAAAAAGCGCTGCTAATGCTTATCTTTAG-A
1 GGCGTTTTTTAAAAAGCGCTGCTAAAGCTTACCTATAGCA
* *
8350842 GGCG-TTTTTCAAAAGCGCCGCTAAAGC
1 GGCGTTTTTTAAAAAGCGCTGCTAAAGC
8350869 CGCGGCAGTT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
38 21 0.38
39 32 0.57
40 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (40 bp):
GGCGTTTTTTAAAAAGCGCTGCTAAAGCTTACCTATAGCA
Found at i:8350920 original size:132 final size:134
Alignment explanation
Indices: 8350749--8351000 Score: 391
Period size: 132 Copynumber: 1.9 Consensus size: 134
8350739 GGCGCAGTTG
** *
8350749 GCATAATTTTTTGCGGCGTTTTTTTAAAAAGCGTTGCTAAAGGTTACCTATAGCAGCGTTTTTTA
1 GCATAATTTTTTGCGGCGTTTTTTTAAAAAGCGCCGCTAAAGGTGACCTATAGCAGCGTTTTTTA
* *
8350814 AAAAGCGCTGCTAATGCTT-ATCTTTAGAGGCGTTTTTC-AAAAGCGCCGCTAAAGCCGCGGCAG
66 AAAAGCGCCGCTAATGCTTGATCTTTAGAGGCATTTTTCAAAAAGCGCCGCTAAAGCCGCGGCAG
8350877 TTTA
131 TTTA
* *
8350881 GCATAATTTTTTGCGGCGTTTTTTTAAAAAGTGCCGCTAAAGGTGACCTATAGCGGCGTTTTTTA
1 GCATAATTTTTTGCGGCGTTTTTTTAAAAAGCGCCGCTAAAGGTGACCTATAGCAGCGTTTTTTA
* * * *
8350946 AAATGCGCCGTTAATGCTTGATCTTTAGCGGCATTTTTCAAAAAGCGCTGCTAAA
66 AAAAGCGCCGCTAATGCTTGATCTTTAGAGGCATTTTTCAAAAAGCGCCGCTAAA
8351001 AACCTATTTT
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
132 76 0.71
133 17 0.16
134 14 0.13
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35
Consensus pattern (134 bp):
GCATAATTTTTTGCGGCGTTTTTTTAAAAAGCGCCGCTAAAGGTGACCTATAGCAGCGTTTTTTA
AAAAGCGCCGCTAATGCTTGATCTTTAGAGGCATTTTTCAAAAAGCGCCGCTAAAGCCGCGGCAG
TTTA
Found at i:8356198 original size:26 final size:26
Alignment explanation
Indices: 8356169--8356276 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
8356159 TGATACAAAT
*
8356169 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8356195 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8356221 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8356247 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8356273 TGAT
1 TGAT
8356277 GGGAATTTCA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8357953 original size:54 final size:54
Alignment explanation
Indices: 8357871--8358015 Score: 238
Period size: 54 Copynumber: 2.7 Consensus size: 54
8357861 ATGGAGGAAG
*
8357871 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCGCATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
*
8357925 TGTCCTGGTGGTTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
* *
8357979 TGTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 TGTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
8358016 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 79 0.93
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
Found at i:8358026 original size:27 final size:27
Alignment explanation
Indices: 8357875--8358033 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
8357865 AGGAAGTGTC
*
8357875 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
8357902 CTGGTGGCTCTGCCGCATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
8357929 CTGGTGGTTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
8357956 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
8357983 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
8358010 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
8358034 GCAGCCTCGC
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.89
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:8358027 original size:81 final size:80
Alignment explanation
Indices: 8357875--8358033 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 80
8357865 AGGAAGTGTC
* * *
8357875 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCGCATATATCTGTCCTGGTGGTTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGCTTAC
8357940 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
8357956 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTG-CT
*
8358019 T-CGTCACAATATCTG
63 TACGCCACAATATCTG
8358034 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
80 16 0.24
81 50 0.74
82 2 0.03
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGCTTAC
GCCACAATATCTGAT
Found at i:8361050 original size:46 final size:49
Alignment explanation
Indices: 8360941--8361217 Score: 213
Period size: 46 Copynumber: 5.8 Consensus size: 49
8360931 TTCGGGTTAT
* * * *
8360941 TTGT-GAGCCAATGTAAGACCATGTCTGGGACATGGAATCGGCATTGAG
1 TTGTAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* * *
8360989 ATG-AGAGCTAGTGTAATA-CATGTCTGGGACAT-GCATCGGCCTCGAG
1 TTGTAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* *
8361035 TTGTA-AGCCAGTGTAAGA-CATGTCTGGGACAT-GTATTGG-CTACGAG
1 TTGTAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAG
* * *
8361081 ATGT---GTCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-AG
1 TTGTAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* * * * * *
8361125 ATGTGTGAGAGCTAGGGTAAGACCATGTTTGGGACATGGCGTCAGCCTCGAT
1 -T-TGT-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* * * *
8361177 TTCG-ATAGTCAGTGTAATACCATGTCTGGGACATGACATCG
1 TT-GTAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
8361218 ACTTAATGGA
Statistics
Matches: 180, Mismatches: 35, Indels: 27
0.74 0.14 0.11
Matches are distributed among these distances:
44 13 0.07
45 17 0.09
46 59 0.33
47 15 0.08
48 13 0.07
49 28 0.16
50 30 0.17
51 4 0.02
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (49 bp):
TTGTAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
Found at i:8361207 original size:49 final size:50
Alignment explanation
Indices: 8361085--8361216 Score: 137
Period size: 50 Copynumber: 2.7 Consensus size: 50
8361075 TACGAGATGT
*
8361085 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATGTGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGATGTGTGAGA
* * * * *
8361135 G-CTAGGGTAAGACCATGTTTGGGACATGGCGTCAGC-CTCGAT-T-TCGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-AGATGTGT-GAGA
* *
8361184 GTCAGTGTAATACCATGTCTGGGACATGACATC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATC
8361217 GACTTAATGG
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
48 1 0.01
49 32 0.48
50 34 0.51
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGATGTGTGAGA
Found at i:8366713 original size:105 final size:105
Alignment explanation
Indices: 8366531--8366743 Score: 399
Period size: 105 Copynumber: 2.0 Consensus size: 105
8366521 AGAGAGAGAA
*
8366531 GAAACTTTCATGGCTTAATTGGGTAAGTTTCCTTGTCCCATTTTTAGTAATTTTGATATTTTTGA
1 GAAACTTTCATGGCTTAATTGGGTAAGTTTCCTCGTCCCATTTTTAGTAATTTTGATATTTTTGA
*
8366596 AACTGGGATAGCTTAATCTATCTATTTGAGGGATCAATTT
66 AACTGAGATAGCTTAATCTATCTATTTGAGGGATCAATTT
*
8366636 GAAACTTTCATGGCTTAATTGGGTAAGTTTCCTCGTCCCGTTTTTAGTAATTTTGATATTTTTGA
1 GAAACTTTCATGGCTTAATTGGGTAAGTTTCCTCGTCCCATTTTTAGTAATTTTGATATTTTTGA
8366701 AACTGAGATAGCTTAATCTATCTATTTGAGGGATCAATTT
66 AACTGAGATAGCTTAATCTATCTATTTGAGGGATCAATTT
8366741 GAA
1 GAA
8366744 GAGTTAACAA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 105 1.00
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (105 bp):
GAAACTTTCATGGCTTAATTGGGTAAGTTTCCTCGTCCCATTTTTAGTAATTTTGATATTTTTGA
AACTGAGATAGCTTAATCTATCTATTTGAGGGATCAATTT
Found at i:8367265 original size:17 final size:17
Alignment explanation
Indices: 8367243--8367276 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8367233 GCAGTATGAT
*
8367243 TTATAATTATGTGAATG
1 TTATAAATATGTGAATG
*
8367260 TTATAAATGTGTGAATG
1 TTATAAATATGTGAATG
8367277 AATATATGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (17 bp):
TTATAAATATGTGAATG
Found at i:8371047 original size:13 final size:13
Alignment explanation
Indices: 8371029--8371063 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
8371019 TTTAATTGGG
*
8371029 TAATTAATTTAGT
1 TAATTAATTTAAT
*
8371042 TAATTAAATTAAT
1 TAATTAATTTAAT
8371055 TAATTAATT
1 TAATTAATT
8371064 AATATTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (13 bp):
TAATTAATTTAAT
Found at i:8376062 original size:33 final size:32
Alignment explanation
Indices: 8376032--8376211 Score: 186
Period size: 33 Copynumber: 5.5 Consensus size: 32
8376022 CATACAAAAC
8376032 ATACCTTTCCTTTTCATATGGTATACACAAAGT
1 ATACCTTTCCTTTTCA-ATGGTATACACAAAGT
** * *
8376065 ATACCTAACCTTTCCAA-GTGTACACACAAAGT
1 ATACCTTTCCTTTTCAATG-GTATACACAAAGT
* * ** *
8376097 GTACATAACCTTTTCAA--GTGTACACATATAGT
1 ATACCTTTCCTTTTCAATGGTATACACA-A-AGT
*
8376129 GTACCTTTCCTTTTCAAGTGGTATACACAAAGT
1 ATACCTTTCCTTTTCAA-TGGTATACACAAAGT
8376162 ATACCTTTCCTTTTCATATGGTATACACAAAGT
1 ATACCTTTCCTTTTCA-ATGGTATACACAAAGT
*
8376195 ATACCCTTCCTTTTCAA
1 ATACCTTTCCTTTTCAA
8376212 GTGTACACAC
Statistics
Matches: 125, Mismatches: 15, Indels: 15
0.81 0.10 0.10
Matches are distributed among these distances:
30 7 0.06
31 2 0.02
32 45 0.36
33 61 0.49
34 2 0.02
35 8 0.06
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (32 bp):
ATACCTTTCCTTTTCAATGGTATACACAAAGT
Found at i:8376248 original size:33 final size:32
Alignment explanation
Indices: 8376056--8376250 Score: 187
Period size: 32 Copynumber: 6.0 Consensus size: 32
8376046 CATATGGTAT
*
8376056 ACACAAAGTATACCTAACCTTTCCAAGTGTAC
1 ACACAAAGTATACCTAACCTTTTCAAGTGTAC
* *
8376088 ACACAAAGTGTACATAACCTTTTCAAGTGTAC
1 ACACAAAGTATACCTAACCTTTTCAAGTGTAC
* * * ** *
8376120 ACATATAGTGTACCTTTCCTTTTCAAGTGGTAT
1 ACACAAAGTATACCTAACCTTTTCAAGT-GTAC
** *
8376153 ACACAAAGTATACCTTTCCTTTTCATA-TGGTAT
1 ACACAAAGTATACCTAACCTTTTCA-AGT-GTAC
*
8376186 ACACAAAGTATACCCT-TCCTTTTCAAGTGTAC
1 ACACAAAGTATA-CCTAACCTTTTCAAGTGTAC
* * *
8376218 ACACAAGGTGTACATAACCTTTTCAAAGTGTAC
1 ACACAAAGTATACCTAACCTTTTC-AAGTGTAC
8376251 CGTTTGGGTA
Statistics
Matches: 140, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
31 2 0.01
32 73 0.52
33 61 0.44
34 4 0.03
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (32 bp):
ACACAAAGTATACCTAACCTTTTCAAGTGTAC
Found at i:8376636 original size:27 final size:27
Alignment explanation
Indices: 8376606--8376659 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
8376596 TCATATAACC
* *
8376606 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
8376633 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
8376660 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:8383202 original size:95 final size:95
Alignment explanation
Indices: 8383039--8383229 Score: 373
Period size: 95 Copynumber: 2.0 Consensus size: 95
8383029 AGTTGGCTCA
*
8383039 ATTTTATCTTCCGATCTCAATTTTACCGACTTAGATGAATTAGTTCAGATTTCACCGATTAATCC
1 ATTTTATCTTCCGATCTCAATTTTACCGACTTAGACGAATTAGTTCAGATTTCACCGATTAATCC
8383104 GGGACTAATGGACAGGTGTACAACAAGATT
66 GGGACTAATGGACAGGTGTACAACAAGATT
8383134 ATTTTATCTTCCGATCTCAATTTTACCGACTTAGACGAATTAGTTCAGATTTCACCGATTAATCC
1 ATTTTATCTTCCGATCTCAATTTTACCGACTTAGACGAATTAGTTCAGATTTCACCGATTAATCC
8383199 GGGACTAATGGACAGGTGTACAACAAGATT
66 GGGACTAATGGACAGGTGTACAACAAGATT
8383229 A
1 A
8383230 CCTTCCGGTC
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (95 bp):
ATTTTATCTTCCGATCTCAATTTTACCGACTTAGACGAATTAGTTCAGATTTCACCGATTAATCC
GGGACTAATGGACAGGTGTACAACAAGATT
Found at i:8398219 original size:27 final size:27
Alignment explanation
Indices: 8398189--8398249 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
8398179 TCAGGAAATG
*
8398189 AAGCCTTTGTAGATAACTTTAAAAAGA
1 AAGCCTTTGTAGATAACTCTAAAAAGA
* * * *
8398216 AAGCCTTTGTGGCTAACTCTGAAAAGG
1 AAGCCTTTGTAGATAACTCTAAAAAGA
8398243 AAGCCTT
1 AAGCCTT
8398250 CATGTCAAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (27 bp):
AAGCCTTTGTAGATAACTCTAAAAAGA
Found at i:8407509 original size:39 final size:39
Alignment explanation
Indices: 8407368--8407509 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
8407358 GAAAGATCTT
*
8407368 ATTCAGTATAATTAGTGGATAT-TGCTCATTTTGAGCAAAC
1 ATTCAGTATAATCAGTGGATATCT-CTCATTTT-AGCAAAC
* * * *
8407408 ATTCTGTATAATCAGTGGATATCGCTCATTTCAGCAAAA
1 ATTCAGTATAATCAGTGGATATCTCTCATTTTAGCAAAC
* * *
8407447 ATTCAGTATGACCAGTGGATATCTCTCGTTTTAGCAAAC
1 ATTCAGTATAATCAGTGGATATCTCTCATTTTAGCAAAC
8407486 ATTCAGTATAATCAGTGGATATCT
1 ATTCAGTATAATCAGTGGATATCT
8407510 GTAACACCCC
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 60 0.69
40 27 0.31
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (39 bp):
ATTCAGTATAATCAGTGGATATCTCTCATTTTAGCAAAC
Found at i:8409472 original size:14 final size:13
Alignment explanation
Indices: 8409455--8409498 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 13
8409445 TAGCCTTGCG
8409455 TCTTTCTCCTTTAT
1 TCTTTCTCCTTT-T
8409469 TCTTTCT-CTTTT
1 TCTTTCTCCTTTT
8409481 T-TTT-TCCTTTT
1 TCTTTCTCCTTTT
8409492 TCTTTCT
1 TCTTTCT
8409499 TTTCTTTCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 1 0.04
11 9 0.33
12 5 0.19
13 5 0.19
14 7 0.26
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (13 bp):
TCTTTCTCCTTTT
Found at i:8409492 original size:11 final size:11
Alignment explanation
Indices: 8409461--8409506 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
8409451 TGCGTCTTTC
8409461 TCCTTTATTCTT
1 TCCTTT-TTCTT
*
8409473 TCTCTTTTTTTT
1 TC-CTTTTTCTT
8409485 TCCTTTTTCTT
1 TCCTTTTTCTT
8409496 T-C-TTTTCTT
1 TCCTTTTTCTT
8409505 TC
1 TC
8409507 TGGTTTGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
9 8 0.27
10 1 0.03
11 9 0.30
12 8 0.27
13 4 0.13
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (11 bp):
TCCTTTTTCTT
Found at i:8409526 original size:4 final size:4
Alignment explanation
Indices: 8409519--8409554 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
8409509 GTTTGTATGG
* *
8409519 CTTT CTTT CTTT CTTT CTTT CTTT CATT CATT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
8409555 TAATACTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.69
Consensus pattern (4 bp):
CTTT
Found at i:8411147 original size:58 final size:57
Alignment explanation
Indices: 8411067--8411207 Score: 151
Period size: 57 Copynumber: 2.5 Consensus size: 57
8411057 ATTATAGAAA
* * * *
8411067 GGATTTAG-CTCGGACGGGTAATCCTGATATAATCTCTCTCGGGCATATGTTACA-ATT
1 GGATTTAGCCT-GGACTGGTAATCCTGAT-TAAGCTCTCTCGAGCATATGTTACATAAT
* * * * *
8411124 AGGGTTTAGCCTGGACTGGTAATCCTAATTGAGCTCTTTTGAGCATATGTTACATAAT
1 -GGATTTAGCCTGGACTGGTAATCCTGATTAAGCTCTCTCGAGCATATGTTACATAAT
*
8411182 GGATTCAGCCTGGACTGGTAATCCTG
1 GGATTTAGCCTGGACTGGTAATCCTG
8411208 TAATACGATA
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
57 43 0.62
58 24 0.35
59 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (57 bp):
GGATTTAGCCTGGACTGGTAATCCTGATTAAGCTCTCTCGAGCATATGTTACATAAT
Found at i:8412391 original size:21 final size:21
Alignment explanation
Indices: 8412367--8412416 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
8412357 GGACCACATA
8412367 GGCGTGTCCCAAGGTCACACG
1 GGCGTGTCCCAAGGTCACACG
8412388 GGCGTGTCCCAAGGTCACACG
1 GGCGTGTCCCAAGGTCACACG
8412409 GGCGTGTC
1 GGCGTGTC
8412417 TCTTGGACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.16, C:0.32, G:0.36, T:0.16
Consensus pattern (21 bp):
GGCGTGTCCCAAGGTCACACG
Found at i:8412431 original size:22 final size:22
Alignment explanation
Indices: 8412341--8412459 Score: 125
Period size: 22 Copynumber: 5.5 Consensus size: 22
8412331 CGGCCTGCTG
8412341 CACGGGCGTGTCCCTTGGACCA
1 CACGGGCGTGTCCCTTGGACCA
** ** *
8412363 CATAGGCGTGTCCCAAGG-TCA
1 CACGGGCGTGTCCCTTGGACCA
** *
8412384 CACGGGCGTGTCCCAAGG-TCA
1 CACGGGCGTGTCCCTTGGACCA
*
8412405 CACGGGCGTGTCTCTTGGACCA
1 CACGGGCGTGTCCCTTGGACCA
* *
8412427 CACGGGCATGTCCCTTAGACCA
1 CACGGGCGTGTCCCTTGGACCA
8412449 CACGGGCGTGT
1 CACGGGCGTGT
8412460 AACTTAGAAA
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
21 36 0.44
22 45 0.56
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (22 bp):
CACGGGCGTGTCCCTTGGACCA
Found at i:8413276 original size:75 final size:75
Alignment explanation
Indices: 8413125--8413551 Score: 424
Period size: 75 Copynumber: 5.8 Consensus size: 75
8413115 TACAATATCT
* * *
8413125 CTCGTTTGAGCAACTTTTAG--T-AT-A-TAGACATTGCTCTTTTGAGCACGGT-AGTATAATCA
1 CTCGTTTGAGCAACTTTCAGTATAATCAGTAGACATTGCTTTTTTGAGCACGTTCAGTATAATCA
8413184 GTAGATATTG
66 GTAGATATTG
* * * *
8413194 CTTGTTTGAGCAACTTTCAATATAATCAGTAGACATTGCTTTTTTAAGCACGTTCAGTATAAACA
1 CTCGTTTGAGCAACTTTCAGTATAATCAGTAGACATTGCTTTTTTGAGCACGTTCAGTATAATCA
* *
8413259 ATAGATATTC
66 GTAGATATTG
* * *
8413269 CTCGTTTGAGCAACTTTCAGTACAATCAATAGACATTG-TTCTTTTGAGCACGTTCAATATAATC
1 CTCGTTTGAGCAACTTTCAGTATAATCAGTAGACATTGCTT-TTTTGAGCACGTTCAGTATAATC
*
8413333 AGTAGATATTA
65 AGTAGATATTG
* * * * * * * * * *
8413344 CTCCTTTGAGC-GCATTGAATATAATCAGTAGATATTGCTTGTTTGAGCACATTTAGTATAACCA
1 CTCGTTTGAGCAACTTTCAGTATAATCAGTAGACATTGCTTTTTTGAGCACGTTCAGTATAATCA
*
8413408 GTAGATATTT
66 GTAGATATTG
** * * * * *
8413418 CTTATTTGAGAAACTTTCAGTATAATCAGTAGACATTGCTCTTTTGAACACATCCAGTATAATCA
1 CTCGTTTGAGCAACTTTCAGTATAATCAGTAGACATTGCTTTTTTGAGCACGTTCAGTATAATCA
8413483 GTAGATATTG
66 GTAGATATTG
* * * ** **
8413493 CTCGTCTGAGC-A-TATTCAGTATAATAAGTAGATATTGCTCATTTGAGCATATTCAGTAT
1 CTCGTTTGAGCAACT-TTCAGTATAATCAGTAGACATTGCTTTTTTGAGCACGTTCAGTAT
8413552 TTAACCAATT
Statistics
Matches: 291, Mismatches: 57, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
69 17 0.06
71 1 0.00
72 2 0.01
73 2 0.01
74 119 0.41
75 150 0.52
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (75 bp):
CTCGTTTGAGCAACTTTCAGTATAATCAGTAGACATTGCTTTTTTGAGCACGTTCAGTATAATCA
GTAGATATTG
Found at i:8413352 original size:37 final size:37
Alignment explanation
Indices: 8413149--8413551 Score: 367
Period size: 37 Copynumber: 10.8 Consensus size: 37
8413139 TTTTAGTATA
* * **
8413149 TAGACATTGCTCTTTTGAGCACGGT-AGTATAATCAG
1 TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAG
* * *
8413185 TAGATATTGCTTGTTTGAGCAACTTTCAATATAATCAG
1 TAGATATTGCTCGTTTGAGC-ACATTCAGTATAATCAG
* ** * * * *
8413223 TAGACATTGCTTTTTTAAGCACGTTCAGTATAAACAA
1 TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAG
* * * *
8413260 TAGATATTCCTCGTTTGAGCAACTTTCAGTACAATCAA
1 TAGATATTGCTCGTTTGAGC-ACATTCAGTATAATCAG
* * * * *
8413298 TAGACATTGTTCTTTTGAGCACGTTCAATATAATCAG
1 TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAG
* * * * *
8413335 TAGATATTACTCCTTTGAGCGCATTGAATATAATCAG
1 TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAG
* * *
8413372 TAGATATTGCTTGTTTGAGCACATTTAGTATAACCAG
1 TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAG
* ** * *
8413409 TAGATATTTCTTATTTGAGAAACTTTCAGTATAATCAG
1 TAGATATTGCTCGTTTGAG-CACATTCAGTATAATCAG
* * * *
8413447 TAGACATTGCTCTTTTGAACACATCCAGTATAATCAG
1 TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAG
* * *
8413484 TAGATATTGCTCGTCTGAGCATATTCAGTATAATAAG
1 TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAG
* *
8413521 TAGATATTGCTCATTTGAGCATATTCAGTAT
1 TAGATATTGCTCGTTTGAGCACATTCAGTAT
8413552 TTAACCAATT
Statistics
Matches: 297, Mismatches: 66, Indels: 7
0.80 0.18 0.02
Matches are distributed among these distances:
36 17 0.06
37 195 0.66
38 85 0.29
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (37 bp):
TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAG
Found at i:8413393 original size:149 final size:148
Alignment explanation
Indices: 8413125--8413551 Score: 504
Period size: 149 Copynumber: 2.9 Consensus size: 148
8413115 TACAATATCT
* *
8413125 CTCGTTTGAGCAACTTTTAGT--AT--ATAGACATTGCTCTTTTGAGCACGGT-AGTATAATCAG
1 CTCGTTTGAGCAACTTTCAGTAAATCAATAGACATTGCTCTTTTGAGCACGTTCAGTATAATCAG
* * * * * *
8413185 TAGATATTGCTTGTTTGAGCAACTTTCAATATAATCAGTAGACATTGCTTTTTTAAGCACGTTCA
66 TAGATATTGCTCGTTTGAGC-ACATTCAATATAATCAGTAGATATTGCTTATTTGAGCACATTCA
8413250 GTATAAACAATAGATATTC
130 GTATAAACAATAGATATTC
* *
8413269 CTCGTTTGAGCAACTTTCAGTACAATCAATAGACATTGTTCTTTTGAGCACGTTCAATATAATCA
1 CTCGTTTGAGCAACTTTCAGTA-AATCAATAGACATTGCTCTTTTGAGCACGTTCAGTATAATCA
* * * * * *
8413334 GTAGATATTACTCCTTTGAGCGCATTGAATATAATCAGTAGATATTGCTTGTTTGAGCACATTTA
65 GTAGATATTGCTCGTTTGAGCACATTCAATATAATCAGTAGATATTGCTTATTTGAGCACATTCA
* * *
8413399 GTATAACCAGTAGATATTT
130 GTATAAACAATAGATATTC
** * * * * *
8413418 CTTATTTGAGAAACTTTCAGTATAATCAGTAGACATTGCTCTTTTGAACACATCCAGTATAATCA
1 CTCGTTTGAGCAACTTTCAGTA-AATCAATAGACATTGCTCTTTTGAGCACGTTCAGTATAATCA
* * * * * *
8413483 GTAGATATTGCTCGTCTGAGCATATTCAGTATAATAAGTAGATATTGCTCATTTGAGCATATTCA
65 GTAGATATTGCTCGTTTGAGCACATTCAATATAATCAGTAGATATTGCTTATTTGAGCACATTCA
8413548 GTAT
130 GTAT
8413552 TTAACCAATT
Statistics
Matches: 237, Mismatches: 40, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
144 20 0.08
147 2 0.01
149 188 0.79
150 27 0.11
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (148 bp):
CTCGTTTGAGCAACTTTCAGTAAATCAATAGACATTGCTCTTTTGAGCACGTTCAGTATAATCAG
TAGATATTGCTCGTTTGAGCACATTCAATATAATCAGTAGATATTGCTTATTTGAGCACATTCAG
TATAAACAATAGATATTC
Found at i:8413523 original size:112 final size:110
Alignment explanation
Indices: 8413174--8413539 Score: 378
Period size: 112 Copynumber: 3.3 Consensus size: 110
8413164 TGAGCACGGT
* *
8413174 AGTATAATCAGTAGATATTGCTTGTTTGAGCAACTTTCAATATAATCAGTAGACATTGCT-TTTT
1 AGTATAATAAGTAGATATTGCTTATTTGAG-AACTTTCAATATAATCAGTAGACATTGCTCTTTT
* * * * *
8413238 TAAGCACGTTCAGTATAAACAATAGATATTCCTCGTTTGAGCAACTTTC
65 GAA-CACATTCAGTATAATCAGTAGATATTGCTCGTTTGAGCAA--TTC
* * * * * * * *
8413287 AGTACAATCAA-TAGACATTG-TTCTTTTGAGCACGTTCAATATAATCAGTAGATATTACTCCTT
1 AGTATAAT-AAGTAGATATTGCTT-ATTTGAGAACTTTCAATATAATCAGTAGACATTGCTCTTT
* * * * * *
8413350 TGAGCGCATTGAATATAATCAGTAGATATTGCTTGTTTGAGCACATTT
64 TGAACACATTCAGTATAATCAGTAGATATTGCTCGTTTGAGCA-ATTC
** * *
8413398 AGTATAACCAGTAGATATTTCTTATTTGAGAAACTTTCAGTATAATCAGTAGACATTGCTCTTTT
1 AGTATAATAAGTAGATATTGCTTATTTGAG-AACTTTCAATATAATCAGTAGACATTGCTCTTTT
* *
8413463 GAACACATCCAGTATAATCAGTAGATATTGCTCGTCTGAGCATATTC
65 GAACACATTCAGTATAATCAGTAGATATTGCTCGTTTGAGCA-ATTC
*
8413510 AGTATAATAAGTAGATATTGCTCATTTGAG
1 AGTATAATAAGTAGATATTGCTTATTTGAG
8413540 CATATTCAGT
Statistics
Matches: 201, Mismatches: 45, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
110 1 0.00
111 21 0.10
112 152 0.76
113 26 0.13
114 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (110 bp):
AGTATAATAAGTAGATATTGCTTATTTGAGAACTTTCAATATAATCAGTAGACATTGCTCTTTTG
AACACATTCAGTATAATCAGTAGATATTGCTCGTTTGAGCAATTC
Found at i:8416533 original size:30 final size:30
Alignment explanation
Indices: 8416484--8416557 Score: 125
Period size: 30 Copynumber: 2.5 Consensus size: 30
8416474 CTGGCACATG
8416484 GCCGTGTG-CCAGCCTGTGTGGCTCACACA
1 GCCGTGTGTCCAGCCTGTGTGGCTCACACA
8416513 GCCGTGTGTCCAG-CTCGTGTGGCTCACACA
1 GCCGTGTGTCCAGCCT-GTGTGGCTCACACA
8416543 GCCGTGTGTCCAGCC
1 GCCGTGTGTCCAGCC
8416558 CATGTGAGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
29 10 0.24
30 31 0.74
31 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.31, T:0.22
Consensus pattern (30 bp):
GCCGTGTGTCCAGCCTGTGTGGCTCACACA
Found at i:8417458 original size:62 final size:59
Alignment explanation
Indices: 8417383--8417499 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
8417373 AGTGATTATC
* * * * *
8417383 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAATATTCTATTATTTTAATAAGAT
1 TTAACATTAAATTTAATCTAATATTTATC-T-TA-ATAAATATTATATTAATTTAATAAGAT
8417445 TTAACATTAAATTTAATCTAATATTTATCTTAATAAATATTATATTAATTTAATA
1 TTAACATTAAATTTAATCTAATATTTATCTTAATAAATATTATATTAATTTAATA
8417500 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 21 0.42
60 2 0.04
61 1 0.02
62 26 0.52
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.50
Consensus pattern (59 bp):
TTAACATTAAATTTAATCTAATATTTATCTTAATAAATATTATATTAATTTAATAAGAT
Found at i:8420921 original size:22 final size:22
Alignment explanation
Indices: 8420896--8420939 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8420886 TAGTCATATA
8420896 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* *
8420918 ATAAATTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
8420940 TATTTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:8420987 original size:16 final size:16
Alignment explanation
Indices: 8420966--8420999 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
8420956 TTTATTTTAG
8420966 TAATAAATTTTAAA-AA
1 TAAT-AATTTTAAATAA
8420982 TAATAATTTTAAATAA
1 TAATAATTTTAAATAA
8420998 TA
1 TA
8421000 TTATTCACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATTTTAAATAA
Found at i:8421052 original size:15 final size:15
Alignment explanation
Indices: 8421032--8421088 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
8421022 ATTCAATATT
8421032 AATATTTTAATAATA
1 AATATTTTAATAATA
*
8421047 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
8421066 AATATATTAATAATA
1 AATATTTTAATAATA
*
8421081 AATGTTTT
1 AATATTTT
8421089 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:8422593 original size:19 final size:20
Alignment explanation
Indices: 8422565--8422612 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
8422555 TATAAAAATT
* *
8422565 AAAATTATAA-AATTTATCA
1 AAAATAATAACAATTTATAA
**
8422584 AAAATAATAACTGTTTATAA
1 AAAATAATAACAATTTATAA
8422604 AAAATAATA
1 AAAATAATA
8422613 TTTTAAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAATAATAACAATTTATAA
Found at i:8427573 original size:29 final size:30
Alignment explanation
Indices: 8427541--8427598 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
8427531 CTAGACCAAA
*
8427541 TTAATCCCTATACTATT-AAATGAATCAAT
1 TTAATCCCTATACTATTAAAAAGAATCAAT
* *
8427570 TTAATCCCTGTACTGTTAAAAAGAATCAA
1 TTAATCCCTATACTATTAAAAAGAATCAA
8427599 ATAAGGTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.34
Consensus pattern (30 bp):
TTAATCCCTATACTATTAAAAAGAATCAAT
Found at i:8429685 original size:21 final size:20
Alignment explanation
Indices: 8429642--8429685 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
8429632 ATTGCATAAA
* *
8429642 AAATTTTTAATTTATTACAT
1 AAATTTTTAATCTAGTACAT
*
8429662 AAATTTTATAATCTAGTACTT
1 AAATTTT-TAATCTAGTACAT
8429683 AAA
1 AAA
8429686 AAGATTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (20 bp):
AAATTTTTAATCTAGTACAT
Found at i:8447172 original size:18 final size:17
Alignment explanation
Indices: 8447149--8447189 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
8447139 TATTTAAGTA
**
8447149 AAAATATTTTATTATATT
1 AAAATATTAAATTATA-T
8447167 AAAATATTAAATTATAT
1 AAAATATTAAATTATAT
8447184 AAAATA
1 AAAATA
8447190 AATAAAATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATATTAAATTATAT
Found at i:8448250 original size:23 final size:22
Alignment explanation
Indices: 8448223--8448295 Score: 87
Period size: 21 Copynumber: 3.4 Consensus size: 22
8448213 GGCTTTGCCA
* *
8448223 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGT-T
*
8448246 ATCAGGCACCTCGTGTGTCG-T
1 ATCAGGCACCTCATGTGTCGTT
*
8448267 ATCAGGCACCTCGTGTGTCGTT
1 ATCAGGCACCTCATGTGTCGTT
8448289 -TCAGGCA
1 ATCAGGCA
8448296 TTTATTTGTC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
21 28 0.61
22 1 0.02
23 17 0.37
ACGTcount: A:0.18, C:0.25, G:0.26, T:0.32
Consensus pattern (22 bp):
ATCAGGCACCTCATGTGTCGTT
Found at i:8448269 original size:21 final size:21
Alignment explanation
Indices: 8448236--8448295 Score: 93
Period size: 21 Copynumber: 2.8 Consensus size: 21
8448226 AGGCACTTTA
8448236 TGTGTCGTATATCAGGCACCTCG
1 TGTGTCG--TATCAGGCACCTCG
8448259 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
*
8448280 TGTGTCGTTTCAGGCA
1 TGTGTCGTATCAGGCA
8448296 TTTATTTGTC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 29 0.81
23 7 0.19
ACGTcount: A:0.15, C:0.25, G:0.28, T:0.32
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:8459489 original size:16 final size:18
Alignment explanation
Indices: 8459458--8459490 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
8459448 GGTTACTATT
8459458 TTTTAGCCGATTTGATGC
1 TTTTAGCCGATTTGATGC
8459476 TTTTA-CCG-TTTGATG
1 TTTTAGCCGATTTGATG
8459491 AGTTTGATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.48
Consensus pattern (18 bp):
TTTTAGCCGATTTGATGC
Found at i:8461486 original size:18 final size:18
Alignment explanation
Indices: 8461438--8461535 Score: 90
Period size: 18 Copynumber: 5.5 Consensus size: 18
8461428 TAATATTTAT
* *
8461438 TAACAATCAGTCAATCAG
1 TAACAATCAGTTATTCAG
* *
8461456 -AACAATTATTTATTCAG
1 TAACAATCAGTTATTCAG
** *
8461473 TAACAGCCAGTTATTCGG
1 TAACAATCAGTTATTCAG
* *
8461491 TAACAATCAATTATTCAA
1 TAACAATCAGTTATTCAG
*
8461509 TAATAATCAGTTATTCAG
1 TAACAATCAGTTATTCAG
*
8461527 TATCAATCA
1 TAACAATCA
8461536 ATTGATTGGT
Statistics
Matches: 60, Mismatches: 19, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
17 13 0.22
18 47 0.78
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (18 bp):
TAACAATCAGTTATTCAG
Found at i:8461571 original size:18 final size:18
Alignment explanation
Indices: 8461545--8461615 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
8461535 AATTGATTGG
*
8461545 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* * *
8461563 TTATTCAGTAAAAATTAGA
1 TTATTCAGTAACAGTCA-A
* * *
8461582 -TATACAGTAACAATTAAA
1 TTATTCAGTAAC-AGTCAA
8461600 TTATTCAGTAACAGTC
1 TTATTCAGTAACAGTC
8461616 GATCTTTCTA
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
18 25 0.64
19 14 0.36
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:8461610 original size:19 final size:19
Alignment explanation
Indices: 8461561--8461612 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
8461551 AGTAACAGTC
*
8461561 AATTATTCAGTAAAAATTA
1 AATTATTCAGTAACAATTA
* *
8461580 GA-TATACAGTAACAATTA
1 AATTATTCAGTAACAATTA
8461598 AATTATTCAGTAACA
1 AATTATTCAGTAACA
8461613 GTCGATCTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.33
Consensus pattern (19 bp):
AATTATTCAGTAACAATTA
Found at i:8461848 original size:53 final size:53
Alignment explanation
Indices: 8461734--8461854 Score: 163
Period size: 53 Copynumber: 2.3 Consensus size: 53
8461724 CCGGAATAGT
* * *
8461734 AACAGTAATAGTAGCAGTACGGTACACAGAGTACCTCATCAGAACAAATCCAG
1 AACAGTAACAGTAACAGCACGGTACACAGAGTACCTCATCAGAACAAATCCAG
** * *
8461787 AATGGTAACAGTAACAGCACGGTACACAGAGTACCTCATCGGAACAAA-CCTG
1 AACAGTAACAGTAACAGCACGGTACACAGAGTACCTCATCAGAACAAATCCAG
8461839 AAACAGTAACAGTAAC
1 -AACAGTAACAGTAAC
8461855 GGTAGTAACA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
52 3 0.05
53 55 0.95
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16
Consensus pattern (53 bp):
AACAGTAACAGTAACAGCACGGTACACAGAGTACCTCATCAGAACAAATCCAG
Found at i:8465200 original size:46 final size:46
Alignment explanation
Indices: 8465150--8465318 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
8465140 TGGTTGAGCA
*
8465150 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
8465196 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
8465241 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
8465289 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCA
8465319 ATTAGGGGCG
Statistics
Matches: 102, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 7 0.07
46 52 0.51
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8465306 original size:93 final size:93
Alignment explanation
Indices: 8465147--8465317 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
8465137 GGATGGTTGA
* * *
8465147 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
8465212 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
8465240 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGAG
8465304 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
8465318 AATTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 4 0.05
93 70 0.95
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:8472970 original size:42 final size:42
Alignment explanation
Indices: 8472844--8472970 Score: 139
Period size: 42 Copynumber: 3.0 Consensus size: 42
8472834 GGGTTACTGA
* * * *
8472844 GATTACGTATAAGACCATATCTGGGATATGGCATCGATATGA
1 GATTACGTGTAAGACCATATCTGGGATATGGCATTGATACGG
* * *
8472886 AACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATTGATACGG
1 GA-TTACGTGTAAGACCATATCTGGGATA-TGGCATTGATACGG
* * *
8472929 GATTACATGTAAGACCATATATGGGATATGGCATTGGTACGG
1 GATTACGTGTAAGACCATATCTGGGATATGGCATTGATACGG
8472971 TATTGTGTGT
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 36 0.52
43 33 0.48
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (42 bp):
GATTACGTGTAAGACCATATCTGGGATATGGCATTGATACGG
Found at i:8488057 original size:77 final size:77
Alignment explanation
Indices: 8487909--8488057 Score: 217
Period size: 77 Copynumber: 1.9 Consensus size: 77
8487899 GTTGGATGTC
* * ***
8487909 CAATTTAAAAAAACTCATTGGGTGACAAAACTGAGACAAATCCATAGTTAGGTAATCACTTTTTT
1 CAATTTAAAAAAACTCATTGGGTGACAAAACTAAGACAAATCCATAGTTAGGTAATCAATTTAAA
**
8487974 TTAAAAAAAAAT
66 AAAAAAAAAAAT
* *
8487986 CAATTTAAAAAAATTCATTGGGTGACAAAATTAAGACAAATCCATAGTTAGGTAATCAATTTAAA
1 CAATTTAAAAAAACTCATTGGGTGACAAAACTAAGACAAATCCATAGTTAGGTAATCAATTTAAA
8488051 AAAAAAA
66 AAAAAAA
8488058 TCATAATTGG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
77 63 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.28
Consensus pattern (77 bp):
CAATTTAAAAAAACTCATTGGGTGACAAAACTAAGACAAATCCATAGTTAGGTAATCAATTTAAA
AAAAAAAAAAAT
Found at i:8489477 original size:18 final size:18
Alignment explanation
Indices: 8489450--8489484 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8489440 AGCACCAAAG
8489450 CTTTCATCCTCCTCCTCA
1 CTTTCATCCTCCTCCTCA
* *
8489468 CTTTCTTCCTCTTCCTC
1 CTTTCATCCTCCTCCTC
8489485 TTCTTCATTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.49, G:0.00, T:0.46
Consensus pattern (18 bp):
CTTTCATCCTCCTCCTCA
Found at i:8495692 original size:39 final size:39
Alignment explanation
Indices: 8495649--8495727 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
8495639 TGGAAGCCAG
8495649 GAAAACATTTTCCGGAAAATGTTATCTTAGTTTTACGGT
1 GAAAACATTTTCCGGAAAATGTTATCTTAGTTTTACGGT
* *
8495688 GAAAACATTTTTCGGAAAATGTTATCTTGGTTTTACGGT
1 GAAAACATTTTCCGGAAAATGTTATCTTAGTTTTACGGT
8495727 G
1 G
8495728 TTTGGAAGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.39
Consensus pattern (39 bp):
GAAAACATTTTCCGGAAAATGTTATCTTAGTTTTACGGT
Found at i:8499478 original size:18 final size:18
Alignment explanation
Indices: 8499457--8499492 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8499447 CAATTAAACC
8499457 ATTTGATTGATATATTTA
1 ATTTGATTGATATATTTA
* *
8499475 ATTTGATTTATTTATTTA
1 ATTTGATTGATATATTTA
8499493 TAATTAAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (18 bp):
ATTTGATTGATATATTTA
Found at i:8499595 original size:18 final size:18
Alignment explanation
Indices: 8499574--8499616 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
8499564 ATAATTTAAA
8499574 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
8499592 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
8499610 ATGTAAA
1 ATATAAA
8499617 AATAATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:8499740 original size:14 final size:15
Alignment explanation
Indices: 8499721--8499758 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
8499711 CTAGAAATAT
8499721 AAATTATTTTTC-AA
1 AAATTATTTTTCGAA
8499735 AAATTATTTTTCGAA
1 AAATTATTTTTCGAA
8499750 AAA-TATTTT
1 AAATTATTTT
8499759 ACTGGCAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (15 bp):
AAATTATTTTTCGAA
Found at i:8501930 original size:12 final size:12
Alignment explanation
Indices: 8501913--8501951 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
8501903 CCGAGCACTT
8501913 TATAAACCTTTC
1 TATAAACCTTTC
*
8501925 TATAAACTTTTC
1 TATAAACCTTTC
8501937 TATAAACCTTTC
1 TATAAACCTTTC
8501949 TAT
1 TAT
8501952 CTGAGGAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.46
Consensus pattern (12 bp):
TATAAACCTTTC
Found at i:8502615 original size:23 final size:23
Alignment explanation
Indices: 8502585--8502630 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
8502575 GTGTTTCATG
8502585 TCTGCTGCCTGATTAAGTTACAT
1 TCTGCTGCCTGATTAAGTTACAT
8502608 TCTGCTGCCTGATTAAGTTACAT
1 TCTGCTGCCTGATTAAGTTACAT
8502631 ACTAGCTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (23 bp):
TCTGCTGCCTGATTAAGTTACAT
Found at i:8502909 original size:25 final size:26
Alignment explanation
Indices: 8502874--8502922 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
8502864 TCTCCAATTC
*
8502874 TTAAACTTGATTTTGA-AATAAAAAA
1 TTAAACATGATTTTGATAATAAAAAA
*
8502899 TTAAACATGATTTTTATAATAAAA
1 TTAAACATGATTTTGATAATAAAA
8502923 CTTATTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (26 bp):
TTAAACATGATTTTGATAATAAAAAA
Found at i:8502986 original size:45 final size:46
Alignment explanation
Indices: 8502937--8503027 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
8502927 TTCTTCACAG
*
8502937 AATTAAA-TTCCTACTATAAAATTTTTAAAAAATACAACCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
* * *
8502982 AATTAAATTTCCTACTTTGAAATTTTCAAAAAATACAATCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
8503028 GACATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 7 0.17
46 34 0.83
ACGTcount: A:0.48, C:0.15, G:0.01, T:0.35
Consensus pattern (46 bp):
AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
Found at i:8508185 original size:120 final size:120
Alignment explanation
Indices: 8507984--8509443 Score: 2764
Period size: 120 Copynumber: 12.2 Consensus size: 120
8507974 TTTTCAAGTT
8507984 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
8508049 TAATATAAGAACATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8508104 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
8508169 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8508223 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
8508288 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8508342 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
8508407 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8508462 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8508527 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8508582 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8508647 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8508702 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8508767 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
8508822 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
8508887 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
8508942 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
8509007 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8509061 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8509126 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
8509181 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
8509246 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
8509301 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8509366 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8509421 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
8509444 TAAATATGAT
Statistics
Matches: 1323, Mismatches: 15, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
119 355 0.27
120 968 0.73
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:8508821 original size:18 final size:17
Alignment explanation
Indices: 8508793--8508827 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8508783 ATTATTAAGA
*
8508793 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8508810 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8508828 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8509180 original size:18 final size:17
Alignment explanation
Indices: 8509152--8509186 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8509142 ATTATTAAGA
*
8509152 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8509169 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8509187 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8509365 original size:719 final size:718
Alignment explanation
Indices: 8507984--8509443 Score: 2794
Period size: 719 Copynumber: 2.0 Consensus size: 718
8507974 TTTTCAAGTT
8507984 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8508049 TAATATAAGAACATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAA
66 TAATATAAGAACATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
*
8508114 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
*
8508179 ATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 ATATTAATTATTAAGAATTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
*
8508244 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
8508309 TAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATAT
326 TAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATAT
8508374 TTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTA
391 TTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTA
8508439 TTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTAT
456 TTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTAT
*
8508504 CATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATA
521 CATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATA
8508569 TAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTAT
586 TAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTAT
* *
8508634 GATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATT
651 GATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATT
8508699 AAA
716 AAA
8508702 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
8508767 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAACATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
8508832 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
*
8508897 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
196 ATATTAATTATTAAGAATTT-ATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
8508962 GTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTA
260 GTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTA
8509027 TTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
325 TTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
8509092 TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
390 TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
*
8509157 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
455 ATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
8509222 TCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTAT
520 TCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTAT
*
8509287 ATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTA
585 ATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTA
*
8509352 TGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAAT
650 TGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAAT
8509417 TAAA
715 TAAA
8509421 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
8509444 TAAATATGAT
Statistics
Matches: 728, Mismatches: 13, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
718 211 0.29
719 517 0.71
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (718 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAACATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
ATATTAATTATTAAGAATTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
TTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
TAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATAT
TTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTA
TTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTAT
CATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATA
TAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTAT
GATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATT
AAA
Found at i:8509420 original size:18 final size:17
Alignment explanation
Indices: 8509392--8509426 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8509382 ATTATTAAGA
*
8509392 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8509409 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8509427 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8509640 original size:44 final size:45
Alignment explanation
Indices: 8509591--8509681 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
8509581 ACCTCTATTC
* * *
8509591 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
8509635 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
8509680 CA
1 CA
8509682 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:8509696 original size:17 final size:16
Alignment explanation
Indices: 8509662--8509713 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
8509652 GATTAGCTAT
8509662 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8509678 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
8509695 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8509711 TAC
1 TAC
8509714 GCCCAATACA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 19 0.54
17 16 0.46
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:8516328 original size:23 final size:23
Alignment explanation
Indices: 8516298--8516343 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
8516288 GTGTTTCATG
8516298 TCTGCTGCCTGATTAAGTGACAT
1 TCTGCTGCCTGATTAAGTGACAT
*
8516321 TCTGCTGCCTGATTAAGTTACAT
1 TCTGCTGCCTGATTAAGTGACAT
8516344 ACTAGCTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (23 bp):
TCTGCTGCCTGATTAAGTGACAT
Found at i:8516622 original size:25 final size:26
Alignment explanation
Indices: 8516587--8516635 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
8516577 TCTCCAATTC
*
8516587 TTAAACTTGATTTTGA-AATAAAAAA
1 TTAAACATGATTTTGATAATAAAAAA
*
8516612 TTAAACATGATTTTTATAATAAAA
1 TTAAACATGATTTTGATAATAAAA
8516636 CTTATTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (26 bp):
TTAAACATGATTTTGATAATAAAAAA
Found at i:8516699 original size:45 final size:46
Alignment explanation
Indices: 8516650--8516740 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
8516640 TTCTTCACAG
*
8516650 AATTAAA-TTCCTACTATAAAATTTTTAAAAAATACAACCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
* * *
8516695 AATTAAATTTCCTACTTTGAAATTTTCAAAAAATACAATCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
8516741 GACATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 7 0.17
46 34 0.83
ACGTcount: A:0.48, C:0.15, G:0.01, T:0.35
Consensus pattern (46 bp):
AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
Found at i:8521899 original size:120 final size:120
Alignment explanation
Indices: 8521698--8523037 Score: 2535
Period size: 120 Copynumber: 11.2 Consensus size: 120
8521688 TTTTCAAGTT
8521698 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
8521763 TAATATAAGAACATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8521818 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
8521883 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8521937 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
8522002 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8522056 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
8522121 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8522176 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8522241 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8522296 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
8522361 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8522415 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8522480 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
8522535 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
8522600 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8522655 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8522720 TAATATAAGAATATTAATTATTAAGAATTCTT-TTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATT-TTATTAAATTATATAGTTTAATTAAA
*
8522775 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
8522840 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8522895 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8522960 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
8523015 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
8523038 TAAATATGAT
Statistics
Matches: 1204, Mismatches: 12, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
119 358 0.30
120 845 0.70
121 1 0.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:8522485 original size:359 final size:359
Alignment explanation
Indices: 8521698--8523037 Score: 2556
Period size: 359 Copynumber: 3.7 Consensus size: 359
8521688 TTTTCAAGTT
8521698 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
8521763 TAATATAAGAACATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
8521828 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
*
8521893 ATATTAATTATTAAGAATTT-TTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
196 ATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
8521957 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
261 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
8522022 TTAAGAATTTTTTAAATTATATAGTTTAATTAAA
326 TTAAGAATTTTTTAAATTATATAGTTTAATTAAA
8522056 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
8522121 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
8522186 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
8522251 ATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
196 ATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
8522316 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
261 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
8522381 TTAAGAATTTTTTAAATTATATAGTTTAATTAAA
326 TTAAGAATTTTTTAAATTATATAGTTTAATTAAA
8522415 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
8522480 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
*
8522545 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
*
8522610 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
196 ATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
8522675 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
261 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
*
8522740 TTAAGAATTCTTTTAAATTATATATTTTAATTAAA
326 TTAAGAATT-TTTTAAATTATATAGTTTAATTAAA
*
8522775 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
8522840 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
8522905 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
* *
8522970 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
196 ATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
8523035 GTT
261 GTT
8523038 TAAATATGAT
Statistics
Matches: 969, Mismatches: 11, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
358 213 0.22
359 473 0.49
360 283 0.29
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (359 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
ATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
TTAAGAATTTTTTAAATTATATAGTTTAATTAAA
Found at i:8522534 original size:18 final size:17
Alignment explanation
Indices: 8522506--8522540 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8522496 ATTATTAAGA
*
8522506 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8522523 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8522541 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8523014 original size:18 final size:17
Alignment explanation
Indices: 8522986--8523020 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8522976 ATTATTAAGA
*
8522986 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8523003 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8523021 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8523234 original size:44 final size:45
Alignment explanation
Indices: 8523185--8523270 Score: 120
Period size: 44 Copynumber: 1.9 Consensus size: 45
8523175 ACCTCTATTC
* *
8523185 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCATTA
***
8523229 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCA
8523271 ATATACCTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 19 0.53
45 17 0.47
ACGTcount: A:0.36, C:0.29, G:0.07, T:0.28
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCATTA
Found at i:8523280 original size:16 final size:16
Alignment explanation
Indices: 8523256--8523324 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
8523246 GATTAGCTAT
8523256 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
8523272 TATACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
8523289 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
8523305 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
8523321 TACA
1 TACA
8523325 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 33 0.69
17 15 0.31
ACGTcount: A:0.36, C:0.36, G:0.01, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:8523298 original size:33 final size:32
Alignment explanation
Indices: 8523256--8523324 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
8523246 GATTAGCTAT
*
8523256 TACACCTCTAATCCAATATACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
8523289 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
8523321 TACA
1 TACA
8523325 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 8 0.24
33 26 0.76
ACGTcount: A:0.36, C:0.36, G:0.01, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:8524152 original size:19 final size:18
Alignment explanation
Indices: 8524125--8524167 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
8524115 AAATTAACAA
*
8524125 AAAAATATATAATATTCAT
1 AAAAATATAAAATATTC-T
*
8524144 AAAATTATAAAATATTCT
1 AAAAATATAAAATATTCT
8524162 AAAAAT
1 AAAAAT
8524168 TTTAAATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAAATATAAAATATTCT
Found at i:8524168 original size:19 final size:18
Alignment explanation
Indices: 8524124--8524178 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
8524114 CAAATTAACA
* *
8524124 AAAAAATATATAATATTC
1 AAAAATTATAAAATATTC
8524142 ATAAAATTATAAAATATTC
1 A-AAAATTATAAAATATTC
*
8524161 TAAAAATTTTAAATATAT
1 -AAAAATTATAAA-ATAT
8524179 ATAATTCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 1 0.03
19 25 0.81
20 5 0.16
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATTATAAAATATTC
Found at i:8526353 original size:13 final size:13
Alignment explanation
Indices: 8526335--8526378 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
8526325 GATTTTGAAA
8526335 CAAAAAAAATAGT
1 CAAAAAAAATAGT
**
8526348 CAAAAAATTTAG-
1 CAAAAAAAATAGT
8526360 -AAAAAAAATAGT
1 CAAAAAAAATAGT
8526372 CAAAAAA
1 CAAAAAA
8526379 TTAAGGTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 9 0.36
13 16 0.64
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.16
Consensus pattern (13 bp):
CAAAAAAAATAGT
Found at i:8528320 original size:25 final size:25
Alignment explanation
Indices: 8528286--8528336 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
8528276 TATGAATATG
8528286 AATTGTATTAAACTGAGTTAAATTT
1 AATTGTATTAAACTGAGTTAAATTT
*
8528311 AATTGTATTAAATTGAGTTAAATTT
1 AATTGTATTAAACTGAGTTAAATTT
8528336 A
1 A
8528337 CTCGTATAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (25 bp):
AATTGTATTAAACTGAGTTAAATTT
Found at i:8528343 original size:25 final size:25
Alignment explanation
Indices: 8528290--8528343 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
8528280 AATATGAATT
*
8528290 GTATTAAACTGAGTTAAATTTAATT
1 GTATTAAACTGAGTTAAATTTAATC
* *
8528315 GTATTAAATTGAGTTAAATTTACTC
1 GTATTAAACTGAGTTAAATTTAATC
8528340 GTAT
1 GTAT
8528344 AGATCTAGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (25 bp):
GTATTAAACTGAGTTAAATTTAATC
Found at i:8528814 original size:26 final size:26
Alignment explanation
Indices: 8528774--8528833 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
8528764 CCCGATATAT
*
8528774 GGCTCTTCGTGAGCTTCCTAATTAAA
1 GGCTCTTCGTAAGCTTCCTAATTAAA
* *
8528800 GGCTCTTTGTAAGCTTCCTAATTAAT
1 GGCTCTTCGTAAGCTTCCTAATTAAA
8528826 GGCTCTTC
1 GGCTCTTC
8528834 AGAGCTTCTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (26 bp):
GGCTCTTCGTAAGCTTCCTAATTAAA
Found at i:8528954 original size:24 final size:24
Alignment explanation
Indices: 8528927--8528985 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
8528917 TATTGGCTCG
8528927 TATGAGCTTCCTGGCTATGACTCT
1 TATGAGCTTCCTGGCTATGACTCT
8528951 TATGAGCTTCCTGGCTATGACTCT
1 TATGAGCTTCCTGGCTATGACTCT
8528975 TATGAGCTTCC
1 TATGAGCTTCC
8528986 CGTTATACAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.37
Consensus pattern (24 bp):
TATGAGCTTCCTGGCTATGACTCT
Found at i:8529023 original size:25 final size:25
Alignment explanation
Indices: 8528995--8529049 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
8528985 CCGTTATACA
*
8528995 GCTCGGATAAGCTTC-CGATTACATG
1 GCTCGCATAAGCTTCTCG-TTACATG
* * *
8529020 GCTCACATGAGCTTCTCGTTATATG
1 GCTCGCATAAGCTTCTCGTTACATG
8529045 GCTCG
1 GCTCG
8529050 AGAGAAGGGT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (25 bp):
GCTCGCATAAGCTTCTCGTTACATG
Found at i:8530177 original size:12 final size:12
Alignment explanation
Indices: 8530160--8530192 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
8530150 TAGTTAGAAA
8530160 AAGAAATTATTG
1 AAGAAATTATTG
8530172 AAGAAATTATTG
1 AAGAAATTATTG
8530184 AAGAAATTA
1 AAGAAATTA
8530193 GGTAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.15, T:0.30
Consensus pattern (12 bp):
AAGAAATTATTG
Found at i:8547920 original size:14 final size:14
Alignment explanation
Indices: 8547901--8547928 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8547891 ACCCTAGTAG
8547901 TAATTAACAAGAAA
1 TAATTAACAAGAAA
8547915 TAATTAACAAGAAA
1 TAATTAACAAGAAA
8547929 GTCACTAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
TAATTAACAAGAAA
Found at i:8551649 original size:23 final size:22
Alignment explanation
Indices: 8551623--8551676 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
8551613 TATTATTATT
*
8551623 TAATATTTACAAGTCTAGTTTAG
1 TAATATTTA-AAGTATAGTTTAG
* *
8551646 TAATATATTAAATTATGGTTTAG
1 TAATAT-TTAAAGTATAGTTTAG
8551669 TAAT-TTTA
1 TAATATTTA
8551677 TTGAATTGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 3 0.11
22 1 0.04
23 20 0.74
24 3 0.11
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.48
Consensus pattern (22 bp):
TAATATTTAAAGTATAGTTTAG
Found at i:8559665 original size:49 final size:49
Alignment explanation
Indices: 8559603--8559701 Score: 162
Period size: 49 Copynumber: 2.0 Consensus size: 49
8559593 ATAAGTATAT
*
8559603 ATTCCTAACCGCTATCAGACGTACTAACGTCCAAAGTGTAAATACTGCA
1 ATTCCTAACCGCTATCAGACGTACTAAAGTCCAAAGTGTAAATACTGCA
* * *
8559652 ATTCCTAACCGCTATCGGACGTACTAAAGTCCAGAGTGTGAATACTGCA
1 ATTCCTAACCGCTATCAGACGTACTAAAGTCCAAAGTGTAAATACTGCA
8559701 A
1 A
8559702 CTAAAGATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (49 bp):
ATTCCTAACCGCTATCAGACGTACTAAAGTCCAAAGTGTAAATACTGCA
Found at i:8564471 original size:28 final size:28
Alignment explanation
Indices: 8564341--8564471 Score: 160
Period size: 27 Copynumber: 4.8 Consensus size: 28
8564331 GGCTATGTGC
* * *
8564341 GGCACTTAGTGTGTGAGACATTGATTAT
1 GGCACTTAGTATGCGAGACATTCATTAT
*
8564369 GGCACTTAGTTTGCG-GACATTCATTAT
1 GGCACTTAGTATGCGAGACATTCATTAT
8564396 GGCACTTAGTATGC-AGACATTCATTAT
1 GGCACTTAGTATGCGAGACATTCATTAT
* * *
8564423 GGCATTTAGTATGCG-GAACATTGATTGT
1 GGCACTTAGTATGCGAG-ACATTCATTAT
*
8564451 GGCACTTAGTCTGCGAGACAT
1 GGCACTTAGTATGCGAGACAT
8564472 CGAGTATGTG
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
27 50 0.56
28 39 0.43
29 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (28 bp):
GGCACTTAGTATGCGAGACATTCATTAT
Found at i:8565991 original size:20 final size:20
Alignment explanation
Indices: 8565966--8566010 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
8565956 CACCCGTGTG
* *
8565966 GTGGCCTGGGACATGCCTGT
1 GTGGCCTGGAACATGCCCGT
8565986 GTGGCCTGGAACATGCCCGT
1 GTGGCCTGGAACATGCCCGT
8566006 GTGGC
1 GTGGC
8566011 TTGCCTATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.11, C:0.27, G:0.40, T:0.22
Consensus pattern (20 bp):
GTGGCCTGGAACATGCCCGT
Found at i:8566668 original size:18 final size:20
Alignment explanation
Indices: 8566626--8566662 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8566616 ATATTTTATG
*
8566626 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
8566645 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
8566663 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:8568871 original size:46 final size:46
Alignment explanation
Indices: 8568819--8569046 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
8568809 AGTGTGCTCT
*
8568819 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
8568865 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
8568911 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
8568957 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
8569003 ATGACA-GAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
8569047 TCATGTCAAA
Statistics
Matches: 162, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 161 0.99
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8570526 original size:37 final size:39
Alignment explanation
Indices: 8570439--8570535 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 39
8570429 CACACCTGAA
8570439 TGGCAACCAACGTCTCATCGGATAGTTCGAAGCAAATAAG
1 TGGCAACCAACGTCTCATCGGATAGTTCGAAGC-AATAAG
* * * *
8570479 TGACGACCAACGTCTCATTGGCTAAG-TCGAAGC-A-AAG
1 TGGCAACCAACGTCTCATCGGAT-AGTTCGAAGCAATAAG
*
8570516 TGGCAACCAACGCCTCATCG
1 TGGCAACCAACGTCTCATCG
8570536 AATCTATCCG
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
37 19 0.40
38 1 0.02
40 26 0.54
41 2 0.04
ACGTcount: A:0.32, C:0.27, G:0.23, T:0.19
Consensus pattern (39 bp):
TGGCAACCAACGTCTCATCGGATAGTTCGAAGCAATAAG
Found at i:8571714 original size:3 final size:3
Alignment explanation
Indices: 8571700--8571738 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
8571690 TTATCTCAAT
8571700 TAA TAGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8571739 GTAAGTAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8577749 original size:37 final size:39
Alignment explanation
Indices: 8577662--8577758 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 39
8577652 CACACCTGAA
*
8577662 TGGCGACCAACGTCTCATCGGATAGTTCGAAGCAAATAAG
1 TGGCGACCAACGTCTCATCGGATAGTCCGAAGC-AATAAG
* *
8577702 TGACGACCAACGTCTCATCGGCTAAG-CCGAAGC-A-AAG
1 TGGCGACCAACGTCTCATCGGAT-AGTCCGAAGCAATAAG
* *
8577739 TGGCAACCAACGCCTCATCG
1 TGGCGACCAACGTCTCATCG
8577759 AATCTATCCG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
37 20 0.40
38 1 0.02
40 27 0.54
41 2 0.04
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (39 bp):
TGGCGACCAACGTCTCATCGGATAGTCCGAAGCAATAAG
Found at i:8578961 original size:15 final size:14
Alignment explanation
Indices: 8578935--8578967 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
8578925 AATAGATAAT
8578935 AATAATAATAAGTA
1 AATAATAATAAGTA
8578949 AATAATAAATAAGTA
1 AATAAT-AATAAGTA
8578964 AATA
1 AATA
8578968 TATATTATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (14 bp):
AATAATAATAAGTA
Found at i:8580415 original size:22 final size:22
Alignment explanation
Indices: 8580390--8580434 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8580380 ATCAATGAGT
*
8580390 AAACCTTATCGATCCTCGTCGA
1 AAACCTTATCAATCCTCGTCGA
*
8580412 AAACCTTATCAATCTTCGTCGA
1 AAACCTTATCAATCCTCGTCGA
8580434 A
1 A
8580435 TAAATTCAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.11, T:0.29
Consensus pattern (22 bp):
AAACCTTATCAATCCTCGTCGA
Found at i:8580722 original size:13 final size:13
Alignment explanation
Indices: 8580704--8580737 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
8580694 CTGGACATCC
8580704 CCACACGGGCAGA
1 CCACACGGGCAGA
8580717 CCACACGGGCAGA
1 CCACACGGGCAGA
*
8580730 CTACACGG
1 CCACACGG
8580738 CCGTGTCCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.38, G:0.29, T:0.03
Consensus pattern (13 bp):
CCACACGGGCAGA
Found at i:8587075 original size:21 final size:21
Alignment explanation
Indices: 8587037--8587076 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8587027 ATTACTCCAA
*
8587037 GAAAGCCGATTGATTCATCTT
1 GAAAGCCGATTCATTCATCTT
8587058 GAAAGCCGGATTCA-TCATC
1 GAAAGCC-GATTCATTCATC
8587077 AAGACTAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (21 bp):
GAAAGCCGATTCATTCATCTT
Found at i:8590091 original size:59 final size:60
Alignment explanation
Indices: 8590020--8590136 Score: 155
Period size: 62 Copynumber: 1.9 Consensus size: 60
8590010 ATCACTTTAA
* * * *
8590020 TATTAAATTAATATAATATTTATC-AAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTATCTAAGATAAACATTAAATTAAATTTAATATTAAATCT
* *
8590079 TATTAAAATAATAGAATGTTTATCTTGTAGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTATC-T-AAGATAAACATTAAATTAAATTTAATATTAA
8590137 TATAATCAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 21 0.43
62 28 0.57
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (60 bp):
TATTAAAATAATAGAATATTTATCTAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:8590161 original size:11 final size:11
Alignment explanation
Indices: 8590115--8590222 Score: 55
Period size: 11 Copynumber: 9.4 Consensus size: 11
8590105 GTAGATAAAC
8590115 ATTAAATTAA-
1 ATTAAATTAAT
8590125 ATTTAATATTAAT
1 A-TTAA-ATTAAT
*
8590138 ATAATCAATTTAAT
1 AT--T-AAATTAAT
8590152 ATTAAATTAAT
1 ATTAAATTAAT
*
8590163 A--AAA-TACT
1 ATTAAATTAAT
*
8590171 ATTAAGATAAAT
1 ATTAA-ATTAAT
8590183 ATTAAATTAA-
1 ATTAAATTAAT
8590193 ATTTAATATTAGAAT
1 A-TTAA-ATT--AAT
*
8590208 ATTAAAATAAT
1 ATTAAATTAAT
8590219 ATTA
1 ATTA
8590223 TTTTTGAAAT
Statistics
Matches: 76, Mismatches: 7, Indels: 29
0.68 0.06 0.26
Matches are distributed among these distances:
8 4 0.05
9 3 0.04
10 4 0.05
11 28 0.37
12 17 0.22
13 3 0.04
14 14 0.18
15 3 0.04
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (11 bp):
ATTAAATTAAT
Found at i:8609368 original size:23 final size:23
Alignment explanation
Indices: 8609315--8609470 Score: 187
Period size: 23 Copynumber: 6.9 Consensus size: 23
8609305 AGTTATGGTT
8609315 GGTAAGCTCT-TTCGAGCTG-AAC
1 GGTAAGCTCTATT-GAGCTGAAAC
* *
8609337 AGTAAGCTCTATTGAGATGAAAC
1 GGTAAGCTCTATTGAGCTGAAAC
*
8609360 GGTAAGCTCTATTGAGCTG-AAT
1 GGTAAGCTCTATTGAGCTGAAAC
*
8609382 GGTAAGCT-TCAATGAGCTGAAAC
1 GGTAAGCTCT-ATTGAGCTGAAAC
* *
8609405 AGTAAGCTCTATTGAGCTGAAAT
1 GGTAAGCTCTATTGAGCTGAAAC
8609428 GGTAAGCTCTATTGAGCT-AAAC
1 GGTAAGCTCTATTGAGCTGAAAC
* *
8609450 GGTAAGCTCCAATGAGCTGAA
1 GGTAAGCTCTATTGAGCTGAA
8609471 GTAGTAAGCT
Statistics
Matches: 114, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
21 1 0.01
22 51 0.45
23 61 0.54
24 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (23 bp):
GGTAAGCTCTATTGAGCTGAAAC
Found at i:8609418 original size:68 final size:68
Alignment explanation
Indices: 8609328--8609481 Score: 238
Period size: 68 Copynumber: 2.3 Consensus size: 68
8609318 AAGCTCTTTC
* * *
8609328 GAGCTG-AACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATTGAGCTGAATGGTAAGCTTC
1 GAGCTGAAACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
8609392 AAT
66 AAT
* *
8609395 GAGCTGAAACAGTAAGCTCTATTGAGCTGAAATGGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
1 GAGCTGAAACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
8609460 AAT
66 AAT
**
8609463 GAGCTGAAGTAGTAAGCTC
1 GAGCTGAAACAGTAAGCTC
8609482 ATACGAGCTG
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
67 6 0.08
68 73 0.92
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (68 bp):
GAGCTGAAACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
AAT
Found at i:8609489 original size:23 final size:23
Alignment explanation
Indices: 8609316--8609514 Score: 96
Period size: 23 Copynumber: 8.8 Consensus size: 23
8609306 GTTATGGTTG
* *
8609316 GTAAGCTCTTTCGAGCTGAA-CA
1 GTAAGCTCATACGAGCTGAATCA
* * * *
8609338 GTAAGCTC-TATTGAGATGAAACG
1 GTAAGCTCATA-CGAGCTGAATCA
* *
8609361 GTAAGCTC-TATTGAGCTGAAT-G
1 GTAAGCTCATA-CGAGCTGAATCA
* *
8609383 GTAAGCTTCA-ATGAGCTGAAACA
1 GTAAGC-TCATACGAGCTGAATCA
* *
8609406 GTAAGCTC-TATTGAGCTGAAAT-G
1 GTAAGCTCATA-CGAGCTG-AATCA
* * *
8609429 GTAAGCTC-TATTGAGCT-AAACG
1 GTAAGCTCATA-CGAGCTGAATCA
*
8609451 GTAAGCTCCA-ATGAGCTGAAGT-A
1 GTAAGCT-CATACGAGCTGAA-TCA
*
8609474 GTAAGCTCATACGAGCTGTATCA
1 GTAAGCTCATACGAGCTGAATCA
8609497 GTAAGCTCATACGAGCTG
1 GTAAGCTCATACGAGCTG
8609515 TGGTGAGTCC
Statistics
Matches: 147, Mismatches: 15, Indels: 29
0.77 0.08 0.15
Matches are distributed among these distances:
21 3 0.02
22 51 0.35
23 91 0.62
24 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (23 bp):
GTAAGCTCATACGAGCTGAATCA
Done.