Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 294 of 311
Found at i:95694331 original size:3 final size:3
Alignment explanation
Indices: 95694323--95694352 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
95694313 TAGCTTTTAA
95694323 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
95694353 TATGGCGTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:95696621 original size:3 final size:3
Alignment explanation
Indices: 95696613--95696675 Score: 74
Period size: 3 Copynumber: 21.0 Consensus size: 3
95696603 ATAAAAAATG
* * * *
95696613 ATA ATA ATA ATA ATA ATA ACA AGA ATT ATA ATT ATA ATTA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
95696658 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
95696676 TAAATTTTGA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
2 2 0.04
3 46 0.90
4 3 0.06
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:95696836 original size:3 final size:3
Alignment explanation
Indices: 95696828--95696987 Score: 119
Period size: 3 Copynumber: 53.0 Consensus size: 3
95696818 AAATAAAACA
* * * *
95696828 AAT AAT AAT AAT AAA AAT AAT AA- AAT AAAG AAT AAT AA- CAT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT
* * * * * *
95696872 AAT AAT AGT AAT AAT AAT AAG CAT GAT AAT ACT AAT AAT AAG AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
95696920 GAT AAT AGT AAT AAAT AAT AAT AAAT AGT AAT AAT AAT AAT AGT AAT
1 AAT AAT AAT AAT -AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* *
95696967 ATT AATT AAT -TT AAT AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT
95696988 GTAGCTAAAA
Statistics
Matches: 119, Mismatches: 31, Indels: 14
0.73 0.19 0.09
Matches are distributed among these distances:
2 4 0.03
3 104 0.87
4 11 0.09
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:95697653 original size:41 final size:44
Alignment explanation
Indices: 95697590--95697671 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 44
95697580 AATATATTTA
95697590 TATATAAACTATTTTTT-AA-AGGAAAATAAAGA-AAATATAGG
1 TATATAAACTATTTTTTAAAGAGGAAAATAAAGAGAAATATAGG
* *
95697631 TATATATA-TATTTTTTCGAAGGAGGAAAATAAAGAGAAATA
1 TATATAAACTATTTTTT--AAAGAGGAAAATAAAGAGAAATA
95697672 AAAAAAGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
40 8 0.24
41 7 0.21
43 1 0.03
44 13 0.38
45 5 0.15
ACGTcount: A:0.51, C:0.02, G:0.15, T:0.32
Consensus pattern (44 bp):
TATATAAACTATTTTTTAAAGAGGAAAATAAAGAGAAATATAGG
Found at i:95698640 original size:44 final size:44
Alignment explanation
Indices: 95698589--95699025 Score: 193
Period size: 44 Copynumber: 9.7 Consensus size: 44
95698579 TCGTCGTTTT
95698589 AATCTGCTCCACTGCAACTTCAGGAAGATAAGACTT-GTGATTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGATAAGA-TTAGTGATTTC
* * * * *
95698633 AACCTGCTCCACTACAACTTTAAGG-AGATAATATT--TG-TTTT
1 AATCTGCTCCACTGCAAC-TTCAGGAAGATAAGATTAGTGATTTC
* * * * *
95698674 GATCTGCTCTACTGCAATTTCA-GAGAGATAAGATCTGTAATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGA-AGATAAGA--T-T-AGTGAT---TTC
** * * * *
95698725 AA-CATATTCCACTACGACTTCAGGGAA-ATAAGATTCGTTATCTTC
1 AATC-TGCTCCACTGCAACTTCA-GGAAGATAAGATTAGTGAT-TTC
* * * *
95698770 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAATTTT
1 AATCTGCTCCACTGCAACTTCAGGAAGATAAGA-TTAGTGATTTC
* * * *
95698814 AACCTGCTCCATTGCAACTTCAGGAAGATAAGGTTTGTG--TT-
1 AATCTGCTCCACTGCAACTTCAGGAAGATAAGATTAGTGATTTC
* * *
95698855 AATCTGCTCTACTGCAACTTCA-GAGAGATAAGATCTGTAATTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGA-AGATAAGA--T-TAGTGAT---TTC
** * * *
95698905 AATAAGTTCCACTGCAACTTTAGGGAA-ATAAGATTCGCT-ATCTTC
1 AATCTGCTCCACTGCAACTTCA-GGAAGATAAGATTAG-TGAT-TTC
* * * * * * *
95698950 AGTTTGCTCCACTGCAACTTTAGGGAGATAATATTCGTAATTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGATAAGATTAGTGATTTC
*
95698994 AACCTGCTCCACTGCAACTTCAGGAAGATAAG
1 AATCTGCTCCACTGCAACTTCAGGAAGATAAG
95699026 GTTTGTTTTG
Statistics
Matches: 295, Mismatches: 63, Indels: 70
0.69 0.15 0.16
Matches are distributed among these distances:
39 1 0.00
40 5 0.02
41 49 0.17
42 4 0.01
43 6 0.02
44 94 0.32
45 67 0.23
46 3 0.01
47 8 0.03
48 4 0.01
49 3 0.01
50 24 0.08
51 22 0.07
52 3 0.01
53 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGAAGATAAGATTAGTGATTTC
Found at i:95698703 original size:85 final size:85
Alignment explanation
Indices: 95698584--95699039 Score: 278
Period size: 85 Copynumber: 5.1 Consensus size: 85
95698574 AGGACTCGTC
*
95698584 GTTTTAATCTGCTCCACTGCAACTTCAG-GAAGATAAGACTTGTGATTTCAACCTGCTCCACTAC
1 GTTTTAATCTGCTCCACTGCAACTTCAGAG-AGATAAGACTTGTAATTTCAACCTGCTCCACTAC
*
95698648 AACTTTAAGGAGATAATATTT
65 AACTTTAAGGAGATAAGATTT
* * * * **
95698669 GTTTTGATCTGCTCTACTGCAATTTCAGAGAGATAAGA-TCTGTAATTTATAGCTTCAACATATT
1 GTTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGACT-TGT-A---AT---TTCAACCTGCT
* * * * *
95698733 CCACTACGACTTCAGGGAAATAAGATTC
58 CCACTACAACTTTAAGGAGATAAGATTT
* * * *
95698761 GTTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTTAACCTGCTCCAT
1 G-T-T-TT-AATCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTAATTTCAACCTGCTCCAC
* * *
95698826 TGCAAC-TTCAGGAAGATAAGGTTT
62 TACAACTTTAAGG-AGATAAGATTT
* * * *
95698850 GTGTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGA-TCTGTAATTAT-AGCTTCAATAAGTT
1 GTTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGACT-TGTAATT-TCAAC--C--T--GCT
* * * *
95698913 CCACTGCAACTTTAGGGAAATAAGATTC
58 CCACTACAACTTTAAGGAGATAAGATTT
* * * * *
95698941 GCTATCTTCAGTTTGCTCCACTGCAACTTTAGGGAGATAATA-TTCGTAATTTCAACCTGCTCCA
1 G-T-T-TT-AATCTGCTCCACTGCAACTTCAGAGAGATAAGACTT-GTAATTTCAACCTGCTCCA
* * *
95699005 CTGCAAC-TTCAGGAAGATAAGGTTT
61 CTACAACTTTAAGG-AGATAAGATTT
*
95699030 GTTTTGATCT
1 GTTTTAATCT
95699040 TGCTATATTG
Statistics
Matches: 280, Mismatches: 60, Indels: 62
0.70 0.15 0.15
Matches are distributed among these distances:
84 2 0.01
85 77 0.28
86 6 0.02
87 2 0.01
88 9 0.03
89 47 0.17
91 21 0.08
92 38 0.14
93 2 0.01
94 5 0.02
95 39 0.14
96 31 0.11
97 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (85 bp):
GTTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTAATTTCAACCTGCTCCACTACA
ACTTTAAGGAGATAAGATTT
Found at i:95698788 original size:181 final size:180
Alignment explanation
Indices: 95698591--95699039 Score: 670
Period size: 180 Copynumber: 2.5 Consensus size: 180
95698581 GTCGTTTTAA
* * * *
95698591 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTGATTTCAACCTGCTCCACTACAACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAACCTGCTCCACTGCAAC-TTCA
** *
95698656 GG-AGATAATATTTGTTTTGATCTGCTCTACTGCAATTTCAGAGAGATAAGATCTGTAATTTATA
65 GGAAGATAAGGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAA-TTATA
* *
95698720 GCTTCAACATA-TTCCACTACGACTTCAGGGAAATAAGATTCGTTATCTTCAG
129 GCTTCAACA-AGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAG
* *
95698772 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTTAACCTGCTCCATTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAACCTGCTCCACTGCAACTTCAG
* *
95698837 GAAGATAAGGTTTGTGTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTATAGC
66 GAAGATAAGGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTATAGC
* * *
95698902 TTCAATAAGTTCCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAG
131 TTCAACAAGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAG
* * *
95698952 TTTGCTCCACTGCAACTTTAGGGAGATAATA-TTCGTAATTTCAACCTGCTCCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAATTTCAACCTGCTCCACTGCAACTTCA
95699016 GGAAGATAAGGTTTGTTTTGATCT
65 GGAAGATAAGGTTTGTTTTGATCT
95699040 TGCTATATTG
Statistics
Matches: 242, Mismatches: 23, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
179 3 0.01
180 133 0.55
181 106 0.44
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (180 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAACCTGCTCCACTGCAACTTCAG
GAAGATAAGGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTATAGC
TTCAACAAGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAG
Found at i:95698790 original size:45 final size:45
Alignment explanation
Indices: 95698732--95699025 Score: 203
Period size: 45 Copynumber: 6.6 Consensus size: 45
95698722 TTCAACATAT
* * *
95698732 TCCACTACGACTTCAGGGAAATAAGATTCGTTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTCGTTATCTTCAATCTGC
* * * *
95698777 TCCACTGCAACTTCAGGGAGATAAGACTT-GTAAT-TTTAACCTGC
1 TCCACTGCAACTTCAGGGAAATAAGA-TTCGTTATCTTCAATCTGC
* * * *
95698821 TCCATTGCAACTTCA-GGAAGATAAG-GT--TTGTGTT-AATCTGC
1 TCCACTGCAACTTCAGGGAA-ATAAGATTCGTTATCTTCAATCTGC
* * * ** *
95698862 TCTACTGCAACTTCAGAGAGATAAGA-TCTGTAATTATAGCTTCAATAAGT
1 TCCACTGCAACTTCAGGGAAATAAGATTC-G---TTAT--CTTCAATCTGC
* * * *
95698912 TCCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTTTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTCGTTATCTTCAATCTGC
* * * * *
95698957 TCCACTGCAACTTTAGGGAGATAATATTCGTAAT-TTCAACCTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTCGTTATCTTCAATCTGC
95699001 TCCACTGCAACTTCA-GGAAGATAAG
1 TCCACTGCAACTTCAGGGAA-ATAAG
95699026 GTTTGTTTTG
Statistics
Matches: 192, Mismatches: 41, Indels: 33
0.72 0.15 0.12
Matches are distributed among these distances:
41 27 0.14
42 5 0.03
43 6 0.03
44 51 0.27
45 64 0.33
46 2 0.01
47 6 0.03
49 2 0.01
50 27 0.14
51 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAAATAAGATTCGTTATCTTCAATCTGC
Found at i:95699888 original size:14 final size:15
Alignment explanation
Indices: 95699869--95699897 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
95699859 CTCATTTTTC
95699869 TTTTTCTTTT-TCTT
1 TTTTTCTTTTCTCTT
95699883 TTTTTCTTTTCTCTT
1 TTTTTCTTTTCTCTT
95699898 CCCATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTTTTCTCTT
Found at i:95701240 original size:13 final size:14
Alignment explanation
Indices: 95701219--95701247 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
95701209 TGAAAAATGG
95701219 ATTAGAAAATATTT
1 ATTAGAAAATATTT
95701233 ATTA-AAAATATTT
1 ATTAGAAAATATTT
95701246 AT
1 AT
95701248 GAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:95702771 original size:15 final size:15
Alignment explanation
Indices: 95702748--95702795 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
95702738 TATCAAATTT
95702748 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
95702763 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
95702778 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
95702792 ATAT
1 ATAT
95702796 AATATATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:95702999 original size:10 final size:10
Alignment explanation
Indices: 95702984--95703025 Score: 66
Period size: 10 Copynumber: 4.2 Consensus size: 10
95702974 TATATATATT
*
95702984 AAATTGAATG
1 AAATTGTATG
95702994 AAATTGTATG
1 AAATTGTATG
95703004 AAATTGTATG
1 AAATTGTATG
*
95703014 AAATTGTGTG
1 AAATTGTATG
95703024 AA
1 AA
95703026 TATATGTGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (10 bp):
AAATTGTATG
Found at i:95703453 original size:18 final size:19
Alignment explanation
Indices: 95703432--95703472 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
95703422 AATGAAATGA
95703432 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
95703450 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
95703469 GAAA
1 GAAA
95703473 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:95707004 original size:19 final size:19
Alignment explanation
Indices: 95706982--95707027 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
95706972 TATAAAATTT
*
95706982 AATGCATATG-ATGAAATG
1 AATGCAAATGCATGAAATG
95707000 CAATGCAAATGCATGAAATG
1 -AATGCAAATGCATGAAATG
95707020 AATGCAAA
1 AATGCAAA
95707028 AAAGAGACGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.22
Consensus pattern (19 bp):
AATGCAAATGCATGAAATG
Found at i:95709004 original size:3 final size:3
Alignment explanation
Indices: 95708996--95709058 Score: 56
Period size: 3 Copynumber: 21.0 Consensus size: 3
95708986 ATAAAAAATG
* * * * * *
95708996 ATA ATA ATA ATA ACA ATA ATA ACA ATA ATA ATA ACA ACA AGA ATT ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
95709044 ATTA A-A ATA ATA ATA
1 A-TA ATA ATA ATA ATA
95709059 TAACTTTTGA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
2 2 0.04
3 44 0.90
4 3 0.06
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:95709013 original size:9 final size:9
Alignment explanation
Indices: 95708975--95709026 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
95708965 AAAAATATTA
95708975 AATAA-AAC
1 AATAATAAC
*
95708983 AA-AATAAAA
1 AATAAT-AAC
* *
95708992 AATGATAAT
1 AATAATAAC
95709001 AATAATAAC
1 AATAATAAC
95709010 AATAATAAC
1 AATAATAAC
95709019 AATAATAA
1 AATAATAA
95709027 TAACAACAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
7 2 0.06
8 2 0.06
9 30 0.83
10 2 0.06
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.21
Consensus pattern (9 bp):
AATAATAAC
Found at i:95711326 original size:267 final size:267
Alignment explanation
Indices: 95710851--95711390 Score: 1080
Period size: 267 Copynumber: 2.0 Consensus size: 267
95710841 TTGGCAATTA
95710851 TGGATTAGAAGAAACAATGTTATCTTTAATGCAGATTTCATTGAAGGGTTTAATATCTTGGAGAA
1 TGGATTAGAAGAAACAATGTTATCTTTAATGCAGATTTCATTGAAGGGTTTAATATCTTGGAGAA
95710916 GAGTAGTAGAATGCGGGATGAGTTTTTTTAGCTCAACCGAGAAACAATGAGTTTGTTCAAGCAAA
66 GAGTAGTAGAATGCGGGATGAGTTTTTTTAGCTCAACCGAGAAACAATGAGTTTGTTCAAGCAAA
95710981 GGGAAAACAAAACTTGCAGTTTCGTAGGGTGGCATCCACATGAAGAAGGATGGTATAAGGTAAAC
131 GGGAAAACAAAACTTGCAGTTTCGTAGGGTGGCATCCACATGAAGAAGGATGGTATAAGGTAAAC
95711046 ACTGATGGTGCTATGTGTAAAGTGTCTCGTAATGCTTCAACAGGTGAAGTTATCCGGGATAACCA
196 ACTGATGGTGCTATGTGTAAAGTGTCTCGTAATGCTTCAACAGGTGAAGTTATCCGGGATAACCA
95711111 TGGTACG
261 TGGTACG
95711118 TGGATTAGAAGAAACAATGTTATCTTTAATGCAGATTTCATTGAAGGGTTTAATATCTTGGAGAA
1 TGGATTAGAAGAAACAATGTTATCTTTAATGCAGATTTCATTGAAGGGTTTAATATCTTGGAGAA
95711183 GAGTAGTAGAATGCGGGATGAGTTTTTTTAGCTCAACCGAGAAACAATGAGTTTGTTCAAGCAAA
66 GAGTAGTAGAATGCGGGATGAGTTTTTTTAGCTCAACCGAGAAACAATGAGTTTGTTCAAGCAAA
95711248 GGGAAAACAAAACTTGCAGTTTCGTAGGGTGGCATCCACATGAAGAAGGATGGTATAAGGTAAAC
131 GGGAAAACAAAACTTGCAGTTTCGTAGGGTGGCATCCACATGAAGAAGGATGGTATAAGGTAAAC
95711313 ACTGATGGTGCTATGTGTAAAGTGTCTCGTAATGCTTCAACAGGTGAAGTTATCCGGGATAACCA
196 ACTGATGGTGCTATGTGTAAAGTGTCTCGTAATGCTTCAACAGGTGAAGTTATCCGGGATAACCA
95711378 TGGTACG
261 TGGTACG
95711385 TGGATT
1 TGGATT
95711391 TCTGGCTTCT
Statistics
Matches: 273, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
267 273 1.00
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (267 bp):
TGGATTAGAAGAAACAATGTTATCTTTAATGCAGATTTCATTGAAGGGTTTAATATCTTGGAGAA
GAGTAGTAGAATGCGGGATGAGTTTTTTTAGCTCAACCGAGAAACAATGAGTTTGTTCAAGCAAA
GGGAAAACAAAACTTGCAGTTTCGTAGGGTGGCATCCACATGAAGAAGGATGGTATAAGGTAAAC
ACTGATGGTGCTATGTGTAAAGTGTCTCGTAATGCTTCAACAGGTGAAGTTATCCGGGATAACCA
TGGTACG
Found at i:95713110 original size:18 final size:19
Alignment explanation
Indices: 95713078--95713116 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
95713068 TAGCAATTCC
*
95713078 ATGCATGAAATTTCAACAA
1 ATGCATGAAAGTTCAACAA
*
95713097 ATGC-TGAAAGTTCAGCAA
1 ATGCATGAAAGTTCAACAA
95713115 AT
1 AT
95713117 CAAAGTCCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (19 bp):
ATGCATGAAAGTTCAACAA
Found at i:95714629 original size:16 final size:16
Alignment explanation
Indices: 95714600--95714632 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
95714590 ATTTGGATAT
95714600 TAATATTAATATATTA
1 TAATATTAATATATTA
95714616 TAAT-TTAATAATATTA
1 TAATATTAAT-ATATTA
95714632 T
1 T
95714633 TATTAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATATTAATATATTA
Found at i:95716721 original size:6 final size:6
Alignment explanation
Indices: 95716712--95716746 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
95716702 ATGCACATGC
95716712 ATATGT ATATGT ATATGT ATATGT ATATGT -TATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
95716747 TGTGCATATG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.51
Consensus pattern (6 bp):
ATATGT
Found at i:95717131 original size:2 final size:2
Alignment explanation
Indices: 95717124--95717169 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
95717114 ATGTTTCTTG
95717124 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
95717166 TC TC
1 TC TC
95717170 CTTCACTCGC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:95728181 original size:15 final size:14
Alignment explanation
Indices: 95728148--95728177 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
95728138 AAATATTATA
95728148 TATTTTTCCTTTTT
1 TATTTTTCCTTTTT
*
95728162 TATTTTTTCTTTTT
1 TATTTTTCCTTTTT
95728176 TA
1 TA
95728178 ATTTAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (14 bp):
TATTTTTCCTTTTT
Found at i:95728637 original size:16 final size:16
Alignment explanation
Indices: 95728616--95728669 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 16
95728606 GGCACGTGAT
95728616 ATTTTTTAATAATATA
1 ATTTTTTAATAATATA
*
95728632 ATTTTTTAAAATAAAATA
1 ATTTTTT--AATAATATA
* *
95728650 ATTATTTAATATTAT-
1 ATTTTTTAATAATATA
95728665 ATTTT
1 ATTTT
95728670 CTCTCTCCCT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 4 0.13
16 13 0.42
18 14 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTTTTAATAATATA
Found at i:95734274 original size:19 final size:17
Alignment explanation
Indices: 95734242--95734284 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
95734232 CTACTTGTGC
*
95734242 ATTTATGTTTTGAACTTG
1 ATTTATGTTATGAA-TTG
95734260 ATTTGATGTTATGAATTG
1 ATTT-ATGTTATGAATTG
*
95734278 AATTATG
1 ATTTATG
95734285 ATAATACCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 10 0.45
19 9 0.41
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (17 bp):
ATTTATGTTATGAATTG
Found at i:95735986 original size:18 final size:18
Alignment explanation
Indices: 95735963--95736026 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
95735953 CATTCGTGAT
95735963 CTGAAGCCCGAAGTTTAG
1 CTGAAGCCCGAAGTTTAG
** * *
95735981 CTGAAGCACATAAGTGCTAAA
1 CTGAAGC-CCGAAGT--TTAG
*
95736002 CGGAAGCCCGAAGTTTAG
1 CTGAAGCCCGAAGTTTAG
95736020 CTGAAGC
1 CTGAAGC
95736027 ACATAAGTGC
Statistics
Matches: 33, Mismatches: 10, Indels: 6
0.67 0.20 0.12
Matches are distributed among these distances:
18 15 0.45
19 5 0.15
20 5 0.15
21 8 0.24
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.19
Consensus pattern (18 bp):
CTGAAGCCCGAAGTTTAG
Found at i:95736008 original size:39 final size:39
Alignment explanation
Indices: 95735965--95736092 Score: 204
Period size: 39 Copynumber: 3.3 Consensus size: 39
95735955 TTCGTGATCT
95735965 GAAGCCCGAAGTTTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGTTTAGCTGAAGCACATAAGTGCTAAACG
95736004 GAAGCCCGAAGTTTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGTTTAGCTGAAGCACATAAGTGCTAAACG
* ** *
95736043 GAAGGCCGAAGGCT-GACTGAAGCACAGAAGTGCTAAACG
1 GAAGCCCGAAGTTTAG-CTGAAGCACATAAGTGCTAAACG
95736082 GAAGCCCGAAG
1 GAAGCCCGAAG
95736093 GCTAACTGAA
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 82 0.99
ACGTcount: A:0.36, C:0.21, G:0.29, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGTTTAGCTGAAGCACATAAGTGCTAAACG
Found at i:95739521 original size:19 final size:20
Alignment explanation
Indices: 95739493--95739531 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
95739483 TACGAACAAT
95739493 CACATAATAATTT-ATCATA
1 CACATAATAATTTAATCATA
*
95739512 CACATCATAATTTAATCATA
1 CACATAATAATTTAATCATA
95739532 ATGTCCCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (20 bp):
CACATAATAATTTAATCATA
Found at i:95740564 original size:16 final size:15
Alignment explanation
Indices: 95740526--95740564 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 15
95740516 CAAACAAATA
95740526 ATCAATTTCATAACAC
1 ATCAA-TTCATAACAC
95740542 ATC-ATTCATAACAC
1 ATCAATTCATAACAC
95740556 TATCAATTC
1 -ATCAATTC
95740565 TTATCTCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 10 0.48
15 4 0.19
16 7 0.33
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.33
Consensus pattern (15 bp):
ATCAATTCATAACAC
Found at i:95741797 original size:11 final size:11
Alignment explanation
Indices: 95741776--95741815 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
95741766 AAATCCTAAT
95741776 TTTTCCTTTTTC
1 TTTT-CTTTTTC
95741788 TTTTCTTTTTC
1 TTTTCTTTTTC
95741799 TTTTCTTTTTC
1 TTTTCTTTTTC
*
95741810 CTTTCT
1 TTTTCT
95741816 CCTTCGCTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 23 0.85
12 4 0.15
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:95741904 original size:5 final size:5
Alignment explanation
Indices: 95741896--95741928 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
95741886 ATTTTATTAT
*
95741896 TAAAC TAAAC TAAAC TAAAC CAAAC TAAAC TAA
1 TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC TAA
95741929 TACAATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.21, G:0.00, T:0.18
Consensus pattern (5 bp):
TAAAC
Found at i:95743900 original size:16 final size:16
Alignment explanation
Indices: 95743855--95743923 Score: 102
Period size: 16 Copynumber: 4.1 Consensus size: 16
95743845 GATACCCATC
95743855 AATTGAGTACATTTAT
1 AATTGAGTACATTTAT
95743871 AATTGTAGGTACATTTAT
1 AATTG-A-GTACATTTAT
95743889 AATTGAGTACATTTAT
1 AATTGAGTACATTTAT
*
95743905 AATTGAGTATATTTTAT
1 AATTGAGTACA-TTTAT
95743922 AA
1 AA
95743924 CTGTAGATAA
Statistics
Matches: 49, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
16 25 0.51
17 9 0.18
18 15 0.31
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.45
Consensus pattern (16 bp):
AATTGAGTACATTTAT
Found at i:95745625 original size:15 final size:15
Alignment explanation
Indices: 95745598--95745635 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 15
95745588 GTACTAATGG
*
95745598 CTTTCTCTTTCT-TT
1 CTTTTTCTTTCTCTT
95745612 -TTTTTCTTTCTCTT
1 CTTTTTCTTTCTCTT
95745626 CTTTTTCTTT
1 CTTTTTCTTT
95745636 AGCTATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
CTTTTTCTTTCTCTT
Found at i:95754926 original size:18 final size:18
Alignment explanation
Indices: 95754903--95754940 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
95754893 TAATTTATTA
**
95754903 TTTTTATCTTAAAAATAT
1 TTTTTATCAAAAAAATAT
95754921 TTTTTATCAAAAAAATAT
1 TTTTTATCAAAAAAATAT
95754939 TT
1 TT
95754941 CTTAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTTTATCAAAAAAATAT
Found at i:95779656 original size:17 final size:17
Alignment explanation
Indices: 95779634--95779676 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
95779624 AGTATATTGA
*
95779634 ATATTAACTT-TTATATT
1 ATATTAAATTATT-TATT
95779651 ATATTAAATTATTTATT
1 ATATTAAATTATTTATT
*
95779668 ATAATAAAT
1 ATATTAAAT
95779677 AAGATTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATTAAATTATTTATT
Found at i:95783210 original size:5 final size:5
Alignment explanation
Indices: 95783168--95783208 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
95783158 TGGTAGCACA
* * *
95783168 CAACA CAACC CAACC CAACC CAACC CAACC CTACC CTACC C
1 CAACC CAACC CAACC CAACC CAACC CAACC CAACC CAACC C
95783209 TAGCTCTGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.37, C:0.59, G:0.00, T:0.05
Consensus pattern (5 bp):
CAACC
Found at i:95786232 original size:41 final size:41
Alignment explanation
Indices: 95786175--95786254 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
95786165 TTAAACATGC
95786175 TTGTATGACAACCCACGTGTATTTCATGCTATTCTTTTTGG
1 TTGTATGACAACCCACGTGTATTTCATGCTATTCTTTTTGG
* * *
95786216 TTGTATGATAATCCACGTGTATTTTATGCTATTCTTTTT
1 TTGTATGACAACCCACGTGTATTTCATGCTATTCTTTTT
95786255 AACTATATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (41 bp):
TTGTATGACAACCCACGTGTATTTCATGCTATTCTTTTTGG
Found at i:95796695 original size:3 final size:3
Alignment explanation
Indices: 95796687--95796719 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
95796677 ATTTTTTAAT
*
95796687 TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
95796720 AGATAGTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:95813272 original size:18 final size:18
Alignment explanation
Indices: 95813245--95813292 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
95813235 TTTTTTTCAA
* * *
95813245 TAACAGTCAATTATTCGG
1 TAACAATCAATTATCCAG
95813263 TAACAATCAATTATCCAG
1 TAACAATCAATTATCCAG
*
95813281 TATCAATCAATT
1 TAACAATCAATT
95813293 GATCGGTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (18 bp):
TAACAATCAATTATCCAG
Found at i:95813546 original size:59 final size:56
Alignment explanation
Indices: 95813476--95813603 Score: 154
Period size: 53 Copynumber: 2.3 Consensus size: 56
95813466 GGCCGAAGCC
* *
95813476 GGAACAGTAACAGTAATAGTAGCAGTGCGGTACACAGAGTACCTCATCGGAACAAATCT
1 GGAACAGTAACAGTAATA--A-CAGTACGATACACAGAGTACCTCATCGGAACAAATCT
* *
95813535 GGAACAATAACAG---TAACAGTACGATACACAGAGTACCTCATCGGAACGAATCT
1 GGAACAGTAACAGTAATAACAGTACGATACACAGAGTACCTCATCGGAACAAATCT
* *
95813588 GAAATAGTAACAGTAA
1 GGAACAGTAACAGTAA
95813604 CGGTAACAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 44 0.75
54 1 0.02
56 2 0.03
59 12 0.20
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (56 bp):
GGAACAGTAACAGTAATAACAGTACGATACACAGAGTACCTCATCGGAACAAATCT
Found at i:95813660 original size:12 final size:12
Alignment explanation
Indices: 95813643--95813667 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
95813633 AGTGCCGAAT
95813643 CGGTAACAGTAA
1 CGGTAACAGTAA
95813655 CGGTAACAGTAA
1 CGGTAACAGTAA
95813667 C
1 C
95813668 AATAGTTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:95814809 original size:8 final size:8
Alignment explanation
Indices: 95814796--95814841 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
95814786 TATCTTTATT
95814796 ATATAATA
1 ATATAATA
95814804 ATATAATA
1 ATATAATA
* *
95814812 ATACATTAA
1 ATATAAT-A
*
95814821 ACATAATA
1 ATATAATA
95814829 ATATAATA
1 ATATAATA
95814837 ATATA
1 ATATA
95814842 TTAAAAATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
8 26 0.84
9 5 0.16
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (8 bp):
ATATAATA
Found at i:95814826 original size:25 final size:25
Alignment explanation
Indices: 95814798--95814846 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
95814788 TCTTTATTAT
95814798 ATAATAATATAATAATACATTAAAC
1 ATAATAATATAATAATACATTAAAC
*
95814823 ATAATAATATAATAATATATTAAA
1 ATAATAATATAATAATACATTAAA
95814847 AATTTTAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAATAATATAATAATACATTAAAC
Found at i:95816157 original size:30 final size:30
Alignment explanation
Indices: 95816108--95816173 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 30
95816098 AGTTTATATC
95816108 TTTA-TATTTTTAAAAGATT-AAAT-TAATT
1 TTTATTATTTTTAAAAGATTAAAATGT-ATT
95816136 TTTATTATTTTTAAGAAGATTAAAATGTATT
1 TTTATTATTTTTAA-AAGATTAAAATGTATT
95816167 TTTATTA
1 TTTATTA
95816174 ATTCAAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
28 4 0.12
29 9 0.26
30 6 0.18
31 14 0.41
32 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (30 bp):
TTTATTATTTTTAAAAGATTAAAATGTATT
Found at i:95817043 original size:19 final size:20
Alignment explanation
Indices: 95817014--95817056 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
95817004 TTGAAATACT
*
95817014 ATTTAAAAATAATTTTTTA-A
1 ATTTAAAAAT-ATTGTTTATA
95817034 ATTT-AAAATATTGTTTATA
1 ATTTAAAAATATTGTTTATA
95817053 ATTT
1 ATTT
95817057 TTCCTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 7 0.33
19 10 0.48
20 4 0.19
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
ATTTAAAAATATTGTTTATA
Found at i:95825270 original size:22 final size:22
Alignment explanation
Indices: 95825245--95825292 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
95825235 ATTATTAGTA
*
95825245 TTTATTTTTAATTTAATGTAAT
1 TTTATTGTTAATTTAATGTAAT
*
95825267 TTTATTGTTAATTTAATTTAAT
1 TTTATTGTTAATTTAATGTAAT
95825289 TTTA
1 TTTA
95825293 ATTATTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (22 bp):
TTTATTGTTAATTTAATGTAAT
Found at i:95827738 original size:3 final size:3
Alignment explanation
Indices: 95827730--95827760 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
95827720 TATCTCCACC
95827730 ATT ATT ATT ATT ATT ATT ATT ATT ATCT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
95827761 GTGTAATCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:95830308 original size:26 final size:24
Alignment explanation
Indices: 95830278--95830325 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
95830268 AATAAAAAAA
*
95830278 TTAAAAATATAATAAATCAAATATAT
1 TTAAAAACATAA-AAA-CAAATATAT
95830304 TTAAAAACATAAAAACAAATAT
1 TTAAAAACATAAAAACAAATAT
95830326 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
TTAAAAACATAAAAACAAATATAT
Found at i:95830345 original size:21 final size:21
Alignment explanation
Indices: 95830296--95830354 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
95830286 ATAATAAATC
*
95830296 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
95830316 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
95830338 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
95830355 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:95830452 original size:21 final size:21
Alignment explanation
Indices: 95830386--95830452 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
95830376 TAACAATATA
95830386 ATAAAAAATAGTTATATTAAAAT
1 ATAAAAAATA--TATATTAAAAT
** * *
95830409 -TTTAAAATA-ATTTTAAAAA
1 ATAAAAAATATATATTAAAAT
*
95830428 ATAAAAAATATATATTAATAT
1 ATAAAAAATATATATTAAAAT
95830449 ATAA
1 ATAA
95830453 TTCGGGCCGG
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
19 8 0.24
20 7 0.21
21 11 0.33
22 7 0.21
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (21 bp):
ATAAAAAATATATATTAAAAT
Found at i:95838583 original size:3 final size:3
Alignment explanation
Indices: 95838575--95838612 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
95838565 TCATCTCCCT
*
95838575 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC CTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
95838613 GTTTTAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:95849005 original size:9 final size:9
Alignment explanation
Indices: 95848988--95849021 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
95848978 AACGGTTTGG
95848988 GCTGCTGTT
1 GCTGCTGTT
*
95848997 GCTGTTGTT
1 GCTGCTGTT
*
95849006 GCTGCTGCT
1 GCTGCTGTT
95849015 GCTGCTG
1 GCTGCTG
95849022 GTGACGCTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.24, G:0.35, T:0.41
Consensus pattern (9 bp):
GCTGCTGTT
Found at i:95856716 original size:52 final size:51
Alignment explanation
Indices: 95856645--95856852 Score: 275
Period size: 52 Copynumber: 4.1 Consensus size: 51
95856635 ATCAAGTGAT
* *
95856645 AAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGT-G
* *
95856697 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* *
95856748 AAAAGTGA-AAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
*
95856794 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-AAGTG
95856846 ATAAGTG
1 A-AAGTG
95856853 GCTACACTTA
Statistics
Matches: 140, Mismatches: 7, Indels: 17
0.85 0.04 0.10
Matches are distributed among these distances:
45 7 0.05
46 35 0.25
51 37 0.26
52 56 0.40
53 5 0.04
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
Found at i:95856821 original size:97 final size:99
Alignment explanation
Indices: 95856637--95856852 Score: 283
Period size: 97 Copynumber: 2.1 Consensus size: 99
95856627 TACTTCTGAT
* *
95856637 CAAGTGATAAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGT
1 CAAGTGA-AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----GAAAGT
* *
95856702 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
60 GATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGA
* *
95856742 CAAGTGAAAAGTGA-AAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-AAAGTGATAAG
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAAG
*
95856805 TGATAGCTTTAGCTACACTTATCTGATCAAGAGA
66 TGATAGCTTCAGCTACACTTATCTGATCAAGAGA
*
95856839 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
95856853 GCTACACTTA
Statistics
Matches: 102, Mismatches: 8, Indels: 9
0.86 0.07 0.08
Matches are distributed among these distances:
97 43 0.42
98 11 0.11
103 34 0.33
104 7 0.07
105 7 0.07
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (99 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAAG
TGATAGCTTCAGCTACACTTATCTGATCAAGAGA
Found at i:95856825 original size:46 final size:46
Alignment explanation
Indices: 95856749--95856852 Score: 174
Period size: 46 Copynumber: 2.3 Consensus size: 46
95856739 TGACAAGTGA
* *
95856749 AAAGTGA-AAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC
*
95856794 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC
95856840 AAAGTGATAAGTG
1 AAAGTGATAAGTG
95856853 GCTACACTTA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 7 0.13
46 48 0.87
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC
Found at i:95856860 original size:37 final size:37
Alignment explanation
Indices: 95856816--95856924 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
95856806 GATAGCTTTA
95856816 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
95856853 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
95856890 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
95856925 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:95857653 original size:18 final size:20
Alignment explanation
Indices: 95857630--95857666 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
95857620 TTTTTACATA
95857630 TTTATAA-TT-AAAAAATAT
1 TTTATAATTTCAAAAAATAT
95857648 TTTATAATTTCAAAAAATA
1 TTTATAATTTCAAAAAATA
95857667 AATAATGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 2 0.12
20 8 0.47
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (20 bp):
TTTATAATTTCAAAAAATAT
Found at i:95857868 original size:16 final size:16
Alignment explanation
Indices: 95857847--95857901 Score: 85
Period size: 16 Copynumber: 3.4 Consensus size: 16
95857837 GTTTGATTCA
95857847 CTGTAATGGAATA-AGG
1 CTGTAATGGAATAGA-G
*
95857863 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
95857879 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
95857895 CTGTAAT
1 CTGTAAT
95857902 AAGTAATTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
16 35 0.97
17 1 0.03
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:95857945 original size:46 final size:44
Alignment explanation
Indices: 95857883--95857977 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
95857873 ATAGAGCTGT
* *
95857883 AATGGAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGAAATAGAACTGTAAT-AGT-ATTCAACTGTTTGGTTGAATGG
***
95857929 AATGAAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGAAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAATGG
95857973 AATGA
1 AATGA
95857978 TGTTGTAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 24 0.55
45 3 0.07
46 17 0.39
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (44 bp):
AATGAAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAATGG
Found at i:95858578 original size:18 final size:18
Alignment explanation
Indices: 95858555--95858589 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
95858545 ACGTGGCAGT
95858555 CCAACTAGATTTTAAGTG
1 CCAACTAGATTTTAAGTG
95858573 CCAACTAGATTTTAAGT
1 CCAACTAGATTTTAAGT
95858590 ATATCTGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (18 bp):
CCAACTAGATTTTAAGTG
Found at i:95858659 original size:40 final size:40
Alignment explanation
Indices: 95858597--95858674 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
95858587 AGTATATCTG
* * *
95858597 TTAATACATACTTTATCCGGCTAAATTGTACAGTTTTCTA
1 TTAATACATACTTCATCCGGCTAAATTATACAATTTTCTA
*
95858637 TTAATACATACTTCATCTGGCTAAATTATACAATTTTC
1 TTAATACATACTTCATCCGGCTAAATTATACAATTTTC
95858675 ACTCAAATAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (40 bp):
TTAATACATACTTCATCCGGCTAAATTATACAATTTTCTA
Found at i:95862898 original size:18 final size:18
Alignment explanation
Indices: 95862875--95862912 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
95862865 AGGGTGTCAC
*
95862875 TTTTTC-TGATGATTCAAG
1 TTTTTCGTGATCATT-AAG
95862893 TTTTTCGTGATCATTAAG
1 TTTTTCGTGATCATTAAG
95862911 TT
1 TT
95862913 ACTGTAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.53
Consensus pattern (18 bp):
TTTTTCGTGATCATTAAG
Found at i:95863608 original size:6 final size:6
Alignment explanation
Indices: 95863597--95863625 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
95863587 TACCAAATCA
95863597 GAGAGG GAGAGG GAGAGG GAGAGG GAGAG
1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAG
95863626 AGAACACCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (6 bp):
GAGAGG
Found at i:95882770 original size:10 final size:11
Alignment explanation
Indices: 95882750--95882776 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
95882740 ATTGAACCTC
95882750 TTTTTCTTTTT
1 TTTTTCTTTTT
95882761 TTTTTCTTTTT
1 TTTTTCTTTTT
95882772 TTTTT
1 TTTTT
95882777 TCTGTTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:95882771 original size:12 final size:12
Alignment explanation
Indices: 95882750--95882779 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
95882740 ATTGAACCTC
95882750 TTTTTC-TTTTT
1 TTTTTCTTTTTT
95882761 TTTTTCTTTTTT
1 TTTTTCTTTTTT
95882773 TTTTTCT
1 TTTTTCT
95882780 GTTTGAAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.33
12 12 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:95888402 original size:24 final size:24
Alignment explanation
Indices: 95888375--95888426 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
95888365 TTAGTAAGTC
*
95888375 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
95888399 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
95888423 AAAT
1 AAAT
95888427 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:95893619 original size:17 final size:18
Alignment explanation
Indices: 95893585--95893621 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
95893575 ATTATGTATG
95893585 AAAAATATAATATTTTTA
1 AAAAATATAATATTTTTA
95893603 AAAAATA-AAT-TTATTTA
1 AAAAATATAATATT-TTTA
95893620 AA
1 AA
95893622 TTAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 2 0.11
17 9 0.50
18 7 0.39
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAAATATAATATTTTTA
Found at i:95899855 original size:4 final size:4
Alignment explanation
Indices: 95899846--95899881 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
95899836 AGAAACAATA
95899846 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
95899882 GAGGAAGGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:95906615 original size:175 final size:174
Alignment explanation
Indices: 95906005--95906715 Score: 1061
Period size: 174 Copynumber: 4.1 Consensus size: 174
95905995 TATTGTCGTG
* * * * *
95906005 TTTTAAATTAATGCAC-GAAACGTTTCAAGAAA-GAAATAAATTAATTTTAAATTTTGAACATAC
1 TTTTAAACTAAAGCACAG-AACGTTTCAA-AAACAAAATGAGTTAATTTTAAATTTTGAACAT-C
* * * * * * * * *
95906068 -TTTTAAGTTTGATATATATATTGAGCGTTTACTGAAAATTTAAATAAATTTTTCATTTTATTTA
63 TTTTTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTA
* * *
95906132 TGACTATTTAATGCACATAGATATCGTTTTTATTATATTTTATTGTA
128 TGACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGTTGTA
* ** *
95906179 TTTTAAACTAAAGTATGGAACATTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTTT
1 TTTTAAACTAAAGCACAGAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTTT
* * *
95906244 TTAAGTTTGATGTATATGTTAAACATTCATTGAAAGTTTAAATAAACTCTTCATTTTATTTATGA
66 TTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTATGA
* *
95906309 CTATTTAATGAGCACAAATATCGTTTTTATTATATTTT-TTCGTA
131 CTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGTT-GTA
*
95906353 TTTTAAACTAAAGCACATAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTTT
1 TTTTAAACTAAAGCACAGAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTTT
*
95906418 TTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTCTGA
66 TTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTATGA
* *
95906483 GTATTTAATGCGCACAGATATCATTTTTATTATATTTTGTTGTA
131 CTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGTTGTA
95906527 TTTTAAACTAAAAGCACAGAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTT
1 TTTTAAACT-AAAGCACAGAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTT
95906592 TTTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTATG
65 TTTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTATG
* *
95906657 ACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGTCGTG
130 ACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGTTGTA
95906702 TTTTAAACTAAAGC
1 TTTTAAACTAAAGC
95906716 TTAATTTTAA
Statistics
Matches: 490, Mismatches: 41, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
173 6 0.01
174 313 0.64
175 171 0.35
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.43
Consensus pattern (174 bp):
TTTTAAACTAAAGCACAGAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTTT
TTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTATGA
CTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGTTGTA
Found at i:95906689 original size:349 final size:348
Alignment explanation
Indices: 95905997--95906715 Score: 1102
Period size: 349 Copynumber: 2.1 Consensus size: 348
95905987 CTGTAAATTA
* * *
95905997 TTGTCGTGTTTTAAATTAATGCACGAAACGTTTCAAGAAAGAAATAAATTAATTTTAAATTTTGA
1 TTGTCGTGTTTTAAACTAAAGCACGAAACGTTTCAAGAAAAAAATAAATTAATTTTAAATTTTGA
* * * * * *
95906062 ACATACTTTTAAGTTTGATATATATATTGAGCGTTTACTGAAAATTTAAATAAATTTTTCATTTT
66 ACATACTTTTAAGTTTAATATATATATTAAACGTTCACTGAAAATTTAAATAAACTCTTCATTTT
* *
95906127 ATTTATGACTATTTAATGCACATAGATATCGTTTTTATTATATTTTATTGTATTTTAAACTAAAG
131 ATTTATGACTATTTAATGCACACAGATATCATTTTTATTATATTTTATTGTATTTTAAACTAAAG
* ** *
95906192 TATGGAACATTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTGATGT
196 CACAGAACATTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTAATGT
*
95906257 ATATGTTAAACATTCATTGAAAGTTTAAATAAACTCTTCATTTTATTTATGACTATTTAATGAGC
261 ATATGTTAAACATTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTATGACTATTTAATGAGC
95906322 ACAAATATCGTTTTTATTATATT
326 ACAAATATCGTTTTTATTATATT
* * * *
95906345 TTTTCGTATTTTAAACTAAAGCAC-ATAACGTTTCAA-AAACAAAATGAGTTAATTTTAAATTTT
1 TTGTCGTGTTTTAAACTAAAGCACGA-AACGTTTCAAGAAA-AAAATAAATTAATTTTAAATTTT
* * *
95906408 GAACAT-CTTTTTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCAT
64 GAACATAC-TTTTAAGTTTAATATATATATTAAACGTTCACTGAAAATTTAAATAAACTCTTCAT
* * * *
95906472 TTTATTTCTGAGTATTTAATGCGCACAGATATCATTTTTATTATATTTTGTTGTATTTTAAACTA
128 TTTATTTATGACTATTTAATGCACACAGATATCATTTTTATTATATTTTATTGTATTTTAAACT-
*
95906537 AAAGCACAGAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTA
192 AAAGCACAGAACATTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTA
*
95906602 ATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTATGACTATTTAAT
257 ATGTATATGTTAAACATTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTATGACTATTTAAT
* *
95906667 GCGCACAGATATCGTTTTTATTATATT
322 GAGCACAAATATCGTTTTTATTATATT
95906694 TTGTCGTGTTTTAAACTAAAGC
1 TTGTCGTGTTTTAAACTAAAGC
95906716 TTAATTTTAA
Statistics
Matches: 334, Mismatches: 33, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
347 5 0.01
348 161 0.48
349 168 0.50
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.44
Consensus pattern (348 bp):
TTGTCGTGTTTTAAACTAAAGCACGAAACGTTTCAAGAAAAAAATAAATTAATTTTAAATTTTGA
ACATACTTTTAAGTTTAATATATATATTAAACGTTCACTGAAAATTTAAATAAACTCTTCATTTT
ATTTATGACTATTTAATGCACACAGATATCATTTTTATTATATTTTATTGTATTTTAAACTAAAG
CACAGAACATTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTAATGT
ATATGTTAAACATTCACTGAAAGTTTAAATAAACTCTTCATTTTATTTATGACTATTTAATGAGC
ACAAATATCGTTTTTATTATATT
Found at i:95906764 original size:147 final size:148
Alignment explanation
Indices: 95906568--95906862 Score: 538
Period size: 147 Copynumber: 2.0 Consensus size: 148
95906558 ACAAAATGAG
*
95906568 TTAATTTTAAATTTTGAACATCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTA
1 TTAATTTTAAATTTTGAACATCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTAAAAGTTTA
95906633 AATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGT
66 AATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGT
* *
95906698 CGTGTTTTAAACTAAAGC
131 AGTATTTTAAACTAAAGC
* *
95906716 TTAATTTTAAATTTTGAACATC-TTTTAAGTTTGATGTATATGTTAAACGTTTACTAAAAGTTTA
1 TTAATTTTAAATTTTGAACATCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTAAAAGTTTA
95906780 AATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGT
66 AATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGT
95906845 AGTATTTTAAACTAAAGC
131 AGTATTTTAAACTAAAGC
95906863 ACGGAACGTT
Statistics
Matches: 142, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
147 120 0.85
148 22 0.15
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.47
Consensus pattern (148 bp):
TTAATTTTAAATTTTGAACATCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTAAAAGTTTA
AATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGT
AGTATTTTAAACTAAAGC
Found at i:95906936 original size:174 final size:173
Alignment explanation
Indices: 95906716--95907034 Score: 523
Period size: 174 Copynumber: 1.8 Consensus size: 173
95906706 AAACTAAAGC
* *
95906716 TTAATTTTAAATTTTGAACATCTTTTAAGTTTGATGTATATGTTAAACGTTTACTA-AAAGTTTA
1 TTAATTTTAAATTTTAAACATCTTTTAAGTTTGATGTATATGTTAAACGTTCACTAGAAA-TTTA
* * *
95906780 AATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGT
65 AATAAACTCTTCATTTTATTTATGACTATTTAATGAGCAAAGATATCATTTTTATTATATTTTGT
95906845 AGTATTTTAAACTAAAGCACGGAACGTTTCAAAAACGAAATGAG
130 AGTATTTTAAACTAAAGCACGGAACGTTTCAAAAACGAAATGAG
* *
95906889 TTAATTTTAAATTTTAAATATCTTTTTAAGTTTGATGTATTTGTTAAACGTTCACTAGAAATTTA
1 TTAATTTTAAATTTTAAACATC-TTTTAAGTTTGATGTATATGTTAAACGTTCACTAGAAATTTA
* *
95906954 AATAAATTCTTTATTTTATTTATGACTATTTAATGAGCAAAGATATCATTTTTATTATATTTTGT
65 AATAAACTCTTCATTTTATTTATGACTATTTAATGAGCAAAGATATCATTTTTATTATATTTTGT
*
95907019 CGTATTTTAAACTAAA
130 AGTATTTTAAACTAAA
95907035 TTTAAACTAA
Statistics
Matches: 134, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
173 20 0.15
174 111 0.83
175 3 0.02
ACGTcount: A:0.35, C:0.09, G:0.10, T:0.46
Consensus pattern (173 bp):
TTAATTTTAAATTTTAAACATCTTTTAAGTTTGATGTATATGTTAAACGTTCACTAGAAATTTAA
ATAAACTCTTCATTTTATTTATGACTATTTAATGAGCAAAGATATCATTTTTATTATATTTTGTA
GTATTTTAAACTAAAGCACGGAACGTTTCAAAAACGAAATGAG
Found at i:95907000 original size:321 final size:323
Alignment explanation
Indices: 95906393--95907034 Score: 1083
Period size: 321 Copynumber: 2.0 Consensus size: 323
95906383 ACAAAATGAG
*
95906393 TTAATTTTAAATTTTGAACATCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTA
1 TTAATTTTAAATTTTGAACATCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTAAAAGTTTA
* *
95906458 AATAAACTCTTCATTTTATTTCTGAGTATTTAATGCGCACAGATATCATTTTTATTATATTTTGT
66 AATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGATATCATTTTTATTATATTTTGT
* *
95906523 TGTATTTTAAACTAAAAGCACAGAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTGAACA
131 AGTATTTTAAACTAAAAGCACAGAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTAAACA
95906588 TCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATT
196 TCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATT
* * * *
95906653 TATGACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGTCGTGTTTTAAACTAAAGC
261 TATGACTATTTAATGAGCAAAGATATCATTTTTATTATATTTTGTCGTATTTTAAACTAAAGC
* *
95906716 TTAATTTTAAATTTTGAACATC-TTTTAAGTTTGATGTATATGTTAAACGTTTACTAAAAGTTTA
1 TTAATTTTAAATTTTGAACATCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTAAAAGTTTA
*
95906780 AATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGATATCGTTTTTATTATATTTTGT
66 AATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGATATCATTTTTATTATATTTTGT
* * *
95906845 AGTATTTTAAACT-AAAGCACGGAACGTTTCAAAAACGAAATGAGTTAATTTTAAATTTTAAATA
131 AGTATTTTAAACTAAAAGCACAGAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTAAACA
* * * *
95906909 TCTTTTTAAGTTTGATGTATTTGTTAAACGTTCACTAGAAA-TTTAAATAAATTCTTTATTTTAT
196 TCTTTTTAAGTTTAATGTATATGTTAAACGTTCACT-GAAAGTTTAAATAAACTCTTCATTTTAT
95906973 TTATGACTATTTAATGAGCAAAGATATCATTTTTATTATATTTTGTCGTATTTTAAACTAAA
260 TTATGACTATTTAATGAGCAAAGATATCATTTTTATTATATTTTGTCGTATTTTAAACTAAA
95907035 TTTAAACTAA
Statistics
Matches: 299, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
321 160 0.54
322 117 0.39
323 22 0.07
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.45
Consensus pattern (323 bp):
TTAATTTTAAATTTTGAACATCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTAAAAGTTTA
AATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGATATCATTTTTATTATATTTTGT
AGTATTTTAAACTAAAAGCACAGAACGTTTCAAAAACAAAATGAGTTAATTTTAAATTTTAAACA
TCTTTTTAAGTTTAATGTATATGTTAAACGTTCACTGAAAGTTTAAATAAACTCTTCATTTTATT
TATGACTATTTAATGAGCAAAGATATCATTTTTATTATATTTTGTCGTATTTTAAACTAAAGC
Found at i:95907492 original size:199 final size:201
Alignment explanation
Indices: 95907173--95907690 Score: 633
Period size: 199 Copynumber: 2.6 Consensus size: 201
95907163 CAAATTATTA
* *
95907173 TTTTTATTTATAACTATTAAATACACAT--ATATCATTTTTATTATATTTTATCATGTTTTAAAT
1 TTTTTACTTATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTATCATG-TTTAAAT
* * * * * *
95907236 GAAAGCATGAAACGTTTCAAAAAATATATGAGTTAATTTGAAATTTTGAAAATCTTTCTATGTTT
65 GAAAGCACGAAACGTTTC-AAGAATATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGCTT
* * * *
95907301 TGATGAGCAATGCTTTTGTATATGTTAACATTCACTAGAATTTTAAATAAAATTGGCAACAAACA
129 TGAAGAGCAAGGCTTTTGTATATGTTAACATTCACCAGAAATTTAAATAAAATTGGCAACAAACA
95907366 -ATT-TCC
194 GATTATCC
* * * * *
95907372 TCTTTT-CTTATAAGTATTAAATACATATAGATGTTATTTTTATTGTATTTTTTCATGTCTTAAA
1 T-TTTTACTTATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTATCATGT-TTAAA
*
95907436 TGAAAGCACGAAACGTTTCAAGAA-AGATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGCTT
64 TGAAAGCACGAAACGTTTCAAGAATATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGCTT
* * * *
95907500 TGAAGAGCAAGGGTTTTGTATATGTTAACGTTCACCGGAAATTTAAATAAAATTGGCAACAATCA
129 TGAAGAGCAAGGCTTTTGTATATGTTAACATTCACCAGAAATTTAAATAAAATTGGCAACAAACA
*
95907565 GATTATTC
194 GATTATCC
* * * *
95907573 TTTTTATTTATAACTATTAAATACACAAAGATATCATTTTTATTGTATTTTGTCGTGTTTCAAAT
1 TTTTTACTTATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTATCATGTTT-AAAT
* * *
95907638 GAAA--AC-ATAATGTTTCAAGAAATATATGAGTTAA-TTTATATTTTTAACATCTT
65 GAAAGCACGA-AACGTTTCAAG-AATATATGAGTTAATTTTAAATTTTGAACATCTT
95907691 CATAAGTTTT
Statistics
Matches: 273, Mismatches: 35, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
198 1 0.00
199 124 0.45
200 37 0.14
201 111 0.41
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.42
Consensus pattern (201 bp):
TTTTTACTTATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTATCATGTTTAAATG
AAAGCACGAAACGTTTCAAGAATATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGCTTTG
AAGAGCAAGGCTTTTGTATATGTTAACATTCACCAGAAATTTAAATAAAATTGGCAACAAACAGA
TTATCC
Found at i:95908243 original size:544 final size:547
Alignment explanation
Indices: 95907386--95908398 Score: 1448
Period size: 544 Copynumber: 1.9 Consensus size: 547
95907376 TTCTTATAAG
* * * * * *
95907386 TATTAAATACATATAGATGTTATTTTTATTGTATTTTTTCATGTCTTAAATGAAAGCACGAAACG
1 TATTAAATACACATAGATATCATTTTTATTATATTTTATCATGTCTTAAATGAAAACACGAAACG
* * * *
95907451 TTTCAAGAAAGATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGCTTTGAAGAGCAAGGGTTT
66 TTTCAAGAAAGATAAGTTAATTTTAAATTTTGAACATATTTCTAAGCTTTGAAGAACAAGGCTTT
* *
95907516 TGTATATGTTAACGTTCACCGGAAATTTAAATAAAATTGGCAACAATCAGATTATTCTTTTTATT
131 TGTATATGTTAACGTTCACCGAAAATTTAAATAAAATTGGCAACAAACAGATTATTCTTTTTATT
* ** *
95907581 TATAACTATTAAATACACAAAGATATCATTTTTATTGTATTTTGTCGTGTTTCAAATGAAAACAT
196 TATAACTATTAAATACAC-AAGATATCATTTTTATTATATTTTACCGTGTTTCAAATGAAAACAG
* * *
95907646 AATGTTTCAAGAAATATATGAGTTAATTTATATTTTTAACATCTTCATAAGTTTTTATGCATATG
260 AATGTTTCAAGAAAGATACGAGTTAATTTATAATTTTAACATCTTCATAAGTTTTTATGCATATG
* * * * * *
95907711 TTAACATTCATTGAAAATTTAAATGAATTTGACAACAAATAAATT-TTATTTTTATTTATAATTA
325 TTAACATTCACTAAAAAATTAAATAAATTTGACAACAAACAAATTCTTATTTTTATTTATAACTA
* *
95907775 TTAAATACGCA-A-ATATTATTTTTATTGTATTTTGTCGTGTTTT-AAATGAAATAATAG-AACA
390 TTAAATACACATAGATATTATTTTTATTGTATTTTGTCGTGTTTTAAAATGAAAGAA-AGAAACA
95907836 TTTCAAGAAAGATATTAGTGTTTTTTTCTTTTTTAACATCTTTCGATGAATAAAACTTTTGTATA
454 TTTCAAGAAAGATATTAGTGTTTTTTTCTTTTTTAACATCTTTCGATGAATAAAACTTTTGTATA
95907901 TGTTAACCTTCTTCTTTTTTATTAGTAGC
519 TGTTAACCTTCTTCTTTTTTATTAGTAGC
* * *
95907930 TATTAAATACACATAGATATCATTTTTATTATATTTTATCGTGTTTTAAATGAAAACAC-ATAAT
1 TATTAAATACACATAGATATCATTTTTATTATATTTTATCATGTCTTAAATGAAAACACGA-AAC
* * **
95907994 GTTTTAAGAAAGATATAAGTTACTTTTAAATTTTGAACATATTTCTAAGCTTTGTTGAACAAGGC
65 GTTTCAAGAAAG--ATAAGTTAATTTTAAATTTTGAACATATTTCTAAGCTTTGAAGAACAAGGC
* * * *
95908059 TTTTGTATATGTTAATGTTCACTGAAAATTTAAATTAAATTGGCAACAAACAGGTTATTCTTTTT
128 TTTTGTATATGTTAACGTTCACCGAAAATTTAAATAAAATTGGCAACAAACAGATTATTCTTTTT
* * * * * *
95908124 ATTTATAACTATTAGATGCAC-ATATATTATTTTTATTATATTTTACCGTGTTTTAAGTGAAAAC
193 ATTTATAACTATTAAATACACAAGATATCATTTTTATTATATTTTACCGTGTTTCAAATGAAAAC
* * *
95908188 AGAATGTTTCAAGAAAGATACGAGTTAATTT-TAAATTTTGACATCTTCCTAAGTTTTTATGTAT
258 AGAATGTTTCAAGAAAGATACGAGTTAATTTAT-AATTTTAACATCTTCATAAGTTTTTATGCAT
** *
95908252 ATGTTAATGTTCACTAAAAAATTAAATAAATTTGACAACAAACAAATTCTTCTTTTTATTTATAA
322 ATGTTAACATTCACTAAAAAATTAAATAAATTTGACAACAAACAAATTCTTATTTTTATTTATAA
*
95908317 CTATTAAATACACATAGATATTATTTTTATTGTATTTTGTCGTGTTTTAAAATGAAAGAACGAAA
387 CTATTAAATACACATAGATATTATTTTTATTGTATTTTGTCGTGTTTTAAAATGAAAGAAAGAAA
*
95908382 CGTTTCAAGAAAGATAT
452 CATTTCAAGAAAGATAT
95908399 GAGTTAATTT
Statistics
Matches: 408, Mismatches: 52, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
543 2 0.00
544 196 0.48
545 27 0.07
546 123 0.30
547 32 0.08
548 28 0.07
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.43
Consensus pattern (547 bp):
TATTAAATACACATAGATATCATTTTTATTATATTTTATCATGTCTTAAATGAAAACACGAAACG
TTTCAAGAAAGATAAGTTAATTTTAAATTTTGAACATATTTCTAAGCTTTGAAGAACAAGGCTTT
TGTATATGTTAACGTTCACCGAAAATTTAAATAAAATTGGCAACAAACAGATTATTCTTTTTATT
TATAACTATTAAATACACAAGATATCATTTTTATTATATTTTACCGTGTTTCAAATGAAAACAGA
ATGTTTCAAGAAAGATACGAGTTAATTTATAATTTTAACATCTTCATAAGTTTTTATGCATATGT
TAACATTCACTAAAAAATTAAATAAATTTGACAACAAACAAATTCTTATTTTTATTTATAACTAT
TAAATACACATAGATATTATTTTTATTGTATTTTGTCGTGTTTTAAAATGAAAGAAAGAAACATT
TCAAGAAAGATATTAGTGTTTTTTTCTTTTTTAACATCTTTCGATGAATAAAACTTTTGTATATG
TTAACCTTCTTCTTTTTTATTAGTAGC
Found at i:95908619 original size:204 final size:205
Alignment explanation
Indices: 95908247--95908737 Score: 591
Period size: 204 Copynumber: 2.4 Consensus size: 205
95908237 TAAGTTTTTA
* *
95908247 TGTATATGTTAATGTTCACTAAAAAATTAAATAAATTTGACAACAAACAAATTCTTCTTTTTATT
1 TGTATATGTTAATGTTCACTAAAAATTTAAATAAATTTGACAACAAATAAATTCTTCTTTTTATT
*
95908312 TATAACTATTAAATACACATAGATATTATTTTTATTGTATTTTGTCGTGTTTTAAAATGAAAGAA
66 TATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTGTCGTGTTTTAAAATGAAAGAA
* * * * * *
95908377 CGAAACGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAAC-ATCTTTTTAAG-CTTTGATG
131 CGAAACGTCTCAAGAAAGAAATAAATTAATTATAAATTTTGAACAAT-TTTTTAAGTCTTTGAAG
95908440 AATAAGACTTT
195 AATAAGACTTT
*
95908451 TGTATATGTTAATGTTCACTAAAAATTTAAATAAATTTTACAACAAATAAATTCTTCTTTTTTAT
1 TGTATATGTTAATGTTCACTAAAAATTTAAATAAATTTGACAACAAATAAATTCTTC-TTTTTAT
* * * *
95908516 TTATAACTATTGAATACAC-TCAGGTATCATTTTTATTGTATTTTGTTGTGTTTT-AAATGAATG
65 TTATAACTATTAAATACACAT-AGATATCATTTTTATTGTATTTTGTCGTGTTTTAAAATGAAAG
* * * * * *
95908579 TACCG-AATGATCT-AAGAATGAAATAAATTAGTTATAAATTTTGTACAATTTTTTAAGTTTTTG
129 -AACGAAACG-TCTCAAGAAAGAAATAAATTAATTATAAATTTTGAACAATTTTTTAAGTCTTTG
*
95908642 AAGATTAAGACTTT
192 AAGAATAAGACTTT
* ** * * * * * * *
95908656 TGTATATGCTAACATCCATTATAAATTTAAGTAAATTTGACAAC-AATCAAAATATTCATTTTAT
1 TGTATATGTTAATGTTCACTAAAAATTTAAATAAATTTGACAACAAAT-AAATTCTTCTTTTTAT
*
95908720 TGATAACTATTAAATACA
65 TTATAACTATTAAATACA
95908738 TACAAATTTA
Statistics
Matches: 246, Mismatches: 34, Indels: 14
0.84 0.12 0.05
Matches are distributed among these distances:
204 125 0.51
205 121 0.49
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (205 bp):
TGTATATGTTAATGTTCACTAAAAATTTAAATAAATTTGACAACAAATAAATTCTTCTTTTTATT
TATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTGTCGTGTTTTAAAATGAAAGAA
CGAAACGTCTCAAGAAAGAAATAAATTAATTATAAATTTTGAACAATTTTTTAAGTCTTTGAAGA
ATAAGACTTT
Found at i:95910759 original size:2 final size:2
Alignment explanation
Indices: 95910752--95910782 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
95910742 AGACAAAATT
*
95910752 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95910783 GTCAACATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:95911754 original size:17 final size:18
Alignment explanation
Indices: 95911732--95911772 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
95911722 GTTTAGAATT
*
95911732 TTTTTATTGT-ATTAATA
1 TTTTTATAGTAATTAATA
95911749 TTTTTATAGTAATTAATA
1 TTTTTATAGTAATTAATA
*
95911767 TATTTA
1 TTTTTA
95911773 AAAAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (18 bp):
TTTTTATAGTAATTAATA
Found at i:95911932 original size:36 final size:34
Alignment explanation
Indices: 95911857--95911925 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 34
95911847 TACACTCTGT
*
95911857 TAATTAAAAACATCTAAAAAATTATAAATTTTTA
1 TAATTAAAAACATCTAAAAAATAATAAATTTTTA
*
95911891 TAATTAAAAA-AT-TAAAATAATAATTACATTTTTA
1 TAATTAAAAACATCTAAAA-AATAA-TAAATTTTTA
95911925 T
1 T
95911926 CCAATTATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 5 0.16
33 6 0.19
34 20 0.65
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (34 bp):
TAATTAAAAACATCTAAAAAATAATAAATTTTTA
Found at i:95923729 original size:94 final size:94
Alignment explanation
Indices: 95923568--95923748 Score: 283
Period size: 94 Copynumber: 1.9 Consensus size: 94
95923558 TATTTTATTT
* *
95923568 TTTAGCCTCTAATATCATCAAATTATGTAAGTTCTAAATCATTCTAGTGCTAGATAAGAGCATAT
1 TTTAGCCTCTAATATCATCAAATTATGTAACTTCGAAATCATTCTAGTGCTAGATAAGAGCATAT
95923633 TACTTTCGTTTGACTTTCAATTTTAGTAC
66 TACTTTCGTTTGACTTTCAATTTTAGTAC
* * *
95923662 TTTAGCCTCTAATATCATTAACTTATGTAACTTCGAAATCATTTTAGTG-TCAGATAAGAGCATA
1 TTTAGCCTCTAATATCATCAAATTATGTAACTTCGAAATCATTCTAGTGCT-AGATAAGAGCATA
* *
95923726 TTACTTTCTTTTGGCTTTCAATT
65 TTACTTTCGTTTGACTTTCAATT
95923749 AGTCCTTATT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
93 1 0.01
94 78 0.99
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.43
Consensus pattern (94 bp):
TTTAGCCTCTAATATCATCAAATTATGTAACTTCGAAATCATTCTAGTGCTAGATAAGAGCATAT
TACTTTCGTTTGACTTTCAATTTTAGTAC
Found at i:95923963 original size:23 final size:23
Alignment explanation
Indices: 95923937--95924021 Score: 85
Period size: 23 Copynumber: 3.9 Consensus size: 23
95923927 GAGATATGAA
95923937 AAAAATTAGATGAGAATGAGGTT
1 AAAAATTAGATGAGAATGAGGTT
95923960 AAAAA--AGA--AGAA--A-GTT
1 AAAAATTAGATGAGAATGAGGTT
95923976 CAATGAAATTAGATGAGAATGAGGTT
1 -AA--AAATTAGATGAGAATGAGGTT
*
95924002 AAAAGTTAGATGAGAATGAG
1 AAAAATTAGATGAGAATGAG
95924022 AATGAGATAT
Statistics
Matches: 51, Mismatches: 1, Indels: 20
0.71 0.01 0.28
Matches are distributed among these distances:
16 3 0.06
17 3 0.06
19 7 0.14
21 6 0.12
23 26 0.51
25 3 0.06
26 3 0.06
ACGTcount: A:0.51, C:0.01, G:0.26, T:0.22
Consensus pattern (23 bp):
AAAAATTAGATGAGAATGAGGTT
Found at i:95924214 original size:37 final size:38
Alignment explanation
Indices: 95924168--95924242 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 38
95924158 TTAAAAATTT
*
95924168 AAATGAAAAAGATTTAAAACTAATATTGTATAAAATAA
1 AAATGAAAAAGATTTAAAACTAATATCGTATAAAATAA
* * * *
95924206 AAAT-AAAAATATTTAAGAGTAATATCGTGTAAAATAA
1 AAATGAAAAAGATTTAAAACTAATATCGTATAAAATAA
95924243 GTCATTGTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
37 28 0.88
38 4 0.12
ACGTcount: A:0.59, C:0.03, G:0.09, T:0.29
Consensus pattern (38 bp):
AAATGAAAAAGATTTAAAACTAATATCGTATAAAATAA
Found at i:95924220 original size:52 final size:50
Alignment explanation
Indices: 95924110--95924221 Score: 127
Period size: 51 Copynumber: 2.2 Consensus size: 50
95924100 ACTTTATTAC
* *
95924110 AAATTTAAAATGAAAAAGACTTAAAATAATATTATGCAAAAAAAATTATTAA
1 AAATTT-AAATGAAAAAGACTTAAAATAATATTATACAAAAAAAA-TATAAA
* * *
95924162 AAATTTAAATGAAAAAGATTTAAAACTAATATTGTATAAAATAAAA-ATAAA
1 AAATTTAAATGAAAAAGACTTAAAA-TAATATTATACAAAA-AAAATATAAA
95924213 AATATTTAA
1 AA-ATTTAA
95924222 GAGTAATATC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
51 24 0.46
52 24 0.46
53 4 0.08
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (50 bp):
AAATTTAAATGAAAAAGACTTAAAATAATATTATACAAAAAAAATATAAA
Found at i:95924324 original size:43 final size:43
Alignment explanation
Indices: 95924265--95924359 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
95924255 TTAAAATGAA
* * *
95924265 AAATA-TTAAGAGTAATATTATTTAAAATATGGGTATGATATG
1 AAATATTTAAGAGTAATATTATGTAAAACATGGGTACGATATG
* *
95924307 AAATATTTAAG-GATAATATTGTGTAAAACATGTGTACGATATG
1 AAATATTTAAGAG-TAATATTATGTAAAACATGGGTACGATATG
**
95924350 ATTTATTTAA
1 AAATATTTAA
95924360 AAATGTAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 6 0.14
43 38 0.86
ACGTcount: A:0.43, C:0.02, G:0.16, T:0.39
Consensus pattern (43 bp):
AAATATTTAAGAGTAATATTATGTAAAACATGGGTACGATATG
Found at i:95924503 original size:33 final size:35
Alignment explanation
Indices: 95924461--95924539 Score: 128
Period size: 33 Copynumber: 2.3 Consensus size: 35
95924451 AACTATTTAA
95924461 TTTTGATTTTATAATTTATAAAATAAATG-TT-TG
1 TTTTGATTTTATAATTTATAAAATAAATGCTTATG
*
95924494 TTTTGATTTTATAATTTATAACATAAATGCTTATG
1 TTTTGATTTTATAATTTATAAAATAAATGCTTATG
95924529 -TTTGATTTTAT
1 TTTTGATTTTAT
95924540 TTATTTGTGT
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
33 28 0.65
34 13 0.30
35 2 0.05
ACGTcount: A:0.33, C:0.03, G:0.09, T:0.56
Consensus pattern (35 bp):
TTTTGATTTTATAATTTATAAAATAAATGCTTATG
Found at i:95925159 original size:36 final size:36
Alignment explanation
Indices: 95925094--95925162 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
95925084 TCACTAGTTG
* *
95925094 AATCACAGCAATATTGAAAAAGAATAAATTATATTC
1 AATCACAACAATATTGAAAAAGAACAAATTATATTC
* * *
95925130 AATCACAACAATGTTTAAAATGAACAAATTATA
1 AATCACAACAATATTGAAAAAGAACAAATTATA
95925163 AAATACCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.28
Consensus pattern (36 bp):
AATCACAACAATATTGAAAAAGAACAAATTATATTC
Found at i:95927437 original size:17 final size:17
Alignment explanation
Indices: 95927415--95927447 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
95927405 TTTAGGTTCG
95927415 AGTTACGCTAATTGCGA
1 AGTTACGCTAATTGCGA
95927432 AGTTACGCTAATTGCG
1 AGTTACGCTAATTGCG
95927448 TTTGTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (17 bp):
AGTTACGCTAATTGCGA
Found at i:95927696 original size:41 final size:40
Alignment explanation
Indices: 95927651--95927730 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 40
95927641 AATAGAACAT
*
95927651 AAACTAAATTCCATATTTATAAATAATATAGGGACATTATA
1 AAACTAAATTCCATATTTATAAATAATACAGGGAC-TTATA
*
95927692 AAACTAAATTCCATATTTATAATTAATACAGGGACTTAT
1 AAACTAAATTCCATATTTATAAATAATACAGGGACTTAT
95927731 GTCATATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
40 4 0.11
41 33 0.89
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.35
Consensus pattern (40 bp):
AAACTAAATTCCATATTTATAAATAATACAGGGACTTATA
Found at i:95928093 original size:15 final size:16
Alignment explanation
Indices: 95928062--95928095 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
95928052 AGTTTATTTG
*
95928062 ATTTTTAAATTACTAT
1 ATTTTTAAATTAATAT
95928078 ATTTTTAAA-TAATAT
1 ATTTTTAAATTAATAT
95928093 ATT
1 ATT
95928096 AAAATAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTTTAAATTAATAT
Found at i:95928972 original size:23 final size:22
Alignment explanation
Indices: 95928945--95928987 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
95928935 GTTAAAAAAA
95928945 TCAATTTAGATATTTTTAATAAT
1 TCAA-TTAGATATTTTTAATAAT
* *
95928968 TCAATTATATCTTTTTAATA
1 TCAATTAGATATTTTTAATA
95928988 CAATTCTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.53
Consensus pattern (22 bp):
TCAATTAGATATTTTTAATAAT
Found at i:95932111 original size:13 final size:15
Alignment explanation
Indices: 95932083--95932116 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
95932073 AATGATATTA
95932083 TAATAAATATAAATT
1 TAATAAATATAAATT
95932098 TAATAAA-A-AAATT
1 TAATAAATATAAATT
95932111 TAATAA
1 TAATAA
95932117 TGTTAGCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 1 0.05
15 7 0.37
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
TAATAAATATAAATT
Found at i:95932706 original size:23 final size:23
Alignment explanation
Indices: 95932680--95932724 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
95932670 TAGTCACTTG
*
95932680 AAAAAAATAT-AAAATCTAAAAAT
1 AAAAAAAT-TCAAAATATAAAAAT
95932703 AAAAAAATTCAAAATATAAAAA
1 AAAAAAATTCAAAATATAAAAA
95932725 AATTATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (23 bp):
AAAAAAATTCAAAATATAAAAAT
Found at i:95932709 original size:16 final size:17
Alignment explanation
Indices: 95932697--95932728 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
95932687 TATAAAATCT
95932697 AAAA-ATAAAAAAATTC
1 AAAATATAAAAAAATTC
95932713 AAAATATAAAAAAATT
1 AAAATATAAAAAAATT
95932729 ATAAAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAATATAAAAAAATTC
Found at i:95932724 original size:15 final size:16
Alignment explanation
Indices: 95932682--95932724 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
95932672 GTCACTTGAA
95932682 AAAAATAT-AAAATCT
1 AAAAATATAAAAATCT
*
95932697 AAAAATAAAAAAAT-T
1 AAAAATATAAAAATCT
*
95932712 CAAAATATAAAAA
1 AAAAATATAAAAA
95932725 AATTATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAAATATAAAAATCT
Found at i:95939089 original size:18 final size:18
Alignment explanation
Indices: 95939066--95939110 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
95939056 ATAAAAAAAA
* *
95939066 TATAAAATTAATTTTAAT
1 TATAAAATTAAATATAAT
*
95939084 TATAAAAATAAATATAAT
1 TATAAAATTAAATATAAT
*
95939102 TTTAAAATT
1 TATAAAATT
95939111 CAAACAATTC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TATAAAATTAAATATAAT
Found at i:95942097 original size:46 final size:47
Alignment explanation
Indices: 95942044--95942386 Score: 365
Period size: 46 Copynumber: 7.6 Consensus size: 47
95942034 TGCCACAGTG
* * * *
95942044 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACAGTTTCATGTCACGTTGCCATGGTA
* ** **
95942090 TCATTCAACCATGGTCTTATTCA-TTTCCCCGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACAGTTT-CATGTCACGTTGCCATGGTA
* *
95942137 TCTTTCAACCATGGTCTTACACA-TTTCATGTCACATTTCCATGGTA
1 TCTTTCAACCATGGTCTTACACAGTTTCATGTCACGTTGCCATGGTA
* * * *
95942183 TCTTTCAACCATGGTCTTACAC-GTTTCATATTAGGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACAGTTTCATGTCACGTTGCCATGGTA
* * *
95942229 TCTTTCAACCATGGTCTTACAC-GTTTCATATCAAGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACAGTTTCATGTCACGTTGCCATGGTA
* *
95942275 TCTTTCAACCATGGTCTTACAC-GTTTCATATCA-G--G---T--TG
1 TCTTTCAACCATGGTCTTACACAGTTTCATGTCACGTTGCCATGGTA
* *
95942313 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACAGTTTCATGTCACGTTGCCATGGTA
*
95942359 TCTTTCAACCATGGTCTTACACATTTTC
1 TCTTTCAACCATGGTCTTACACAGTTTC
95942387 TATCAGAGAG
Statistics
Matches: 262, Mismatches: 22, Indels: 25
0.85 0.07 0.08
Matches are distributed among these distances:
38 33 0.13
39 1 0.00
40 1 0.00
41 1 0.00
43 1 0.00
44 1 0.00
45 4 0.02
46 177 0.68
47 43 0.16
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (47 bp):
TCTTTCAACCATGGTCTTACACAGTTTCATGTCACGTTGCCATGGTA
Found at i:95942326 original size:38 final size:38
Alignment explanation
Indices: 95942275--95942350 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
95942265 TGTCATGGTA
*
95942275 TCTTTCAACCATGGTCTTACACGTTTCATATCAGGTTG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
95942313 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
95942351 CCATGGTATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (38 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
Found at i:95942371 original size:130 final size:135
Alignment explanation
Indices: 95942041--95942384 Score: 423
Period size: 130 Copynumber: 2.6 Consensus size: 135
95942031 TGATGCCACA
* * * * *
95942041 GTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCATTCAACCATGGT
1 GTGTCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGT
** * * *
95942105 CTTATTCATTTCCCCGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCA
65 CTTACACATTTCCACATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA-GT--
95942170 CATTTCCATG
127 CA-TTCCATG
* * * *
95942180 GTATCTTTCAACCATGGTCTTACACGTTTCATATTAGGTTGTCATGGTATCTTTCAACCATGGTC
1 GTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
* * * *
95942245 TTACACGTTT-CATATCAAGTTGTCATGGTATCTTTCAACCATGGTCTTACACGTTTCA-T-A-T
66 TTACACATTTCCACATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAGTCATT
95942306 -CA-G
131 CCATG
95942309 GTTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGT
1 G-TGTCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGT
95942374 CTTACACATTT
65 CTTACACATTT
95942385 TCTATCAGAG
Statistics
Matches: 180, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
129 2 0.01
130 71 0.39
131 1 0.01
133 1 0.01
136 1 0.01
138 46 0.26
139 58 0.32
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.40
Consensus pattern (135 bp):
GTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
TTACACATTTCCACATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAGTCATT
CCATG
Found at i:95945578 original size:25 final size:25
Alignment explanation
Indices: 95945536--95945681 Score: 79
Period size: 25 Copynumber: 5.9 Consensus size: 25
95945526 ATAGATATAA
* *
95945536 AAAAAATATGTACGTAATATAGTGT
1 AAAAAATATATACATAATATAGTGT
* *
95945561 AAAAAATACATACATAATATAAT-T
1 AAAAAATATATACATAATATAGTGT
* *
95945585 --AAAATATATACATAAGATAACATGTAGA
1 AAAAAATATATACAT-A-AT-ATA-GT-GT
* * *
95945613 AAAAAAAATATAAATAATATAGTAT
1 AAAAAATATATACATAATATAGTGT
* *
95945638 TAAAGATATATACATAA-ATA--GT
1 AAAAAATATATACATAATATAGTGT
* * *
95945660 ATAATATATATACGTAATATAG
1 AAAAAATATATACATAATATAG
95945682 AATTTAGAAT
Statistics
Matches: 89, Mismatches: 22, Indels: 21
0.67 0.17 0.16
Matches are distributed among these distances:
22 26 0.29
23 4 0.04
24 6 0.07
25 34 0.38
26 3 0.03
27 2 0.02
28 2 0.02
29 1 0.01
30 11 0.12
ACGTcount: A:0.57, C:0.05, G:0.08, T:0.30
Consensus pattern (25 bp):
AAAAAATATATACATAATATAGTGT
Found at i:95945595 original size:22 final size:22
Alignment explanation
Indices: 95945563--95945604 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
95945553 TATAGTGTAA
*
95945563 AAAATACATACATAATATAATT
1 AAAATACATACATAAGATAATT
*
95945585 AAAATATATACATAAGATAA
1 AAAATACATACATAAGATAA
95945605 CATGTAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAATACATACATAAGATAATT
Found at i:95946067 original size:16 final size:16
Alignment explanation
Indices: 95946029--95946067 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
95946019 ATCTCCAAAA
*
95946029 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
95946045 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
95946061 AATAACT
1 AAAAACT
95946068 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:95946248 original size:18 final size:18
Alignment explanation
Indices: 95946225--95946278 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
95946215 ACAAGTGGTG
95946225 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
95946243 GTGGAG-TAG-GT-G---
1 GTGGAGCAAGTGTGGCTA
95946255 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
95946273 GTGGAG
1 GTGGAG
95946279 TAGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 12 0.43
ACGTcount: A:0.20, C:0.07, G:0.50, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:95946257 original size:30 final size:30
Alignment explanation
Indices: 95946221--95946349 Score: 222
Period size: 30 Copynumber: 4.3 Consensus size: 30
95946211 AGGTACAAGT
95946221 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
95946251 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
* * *
95946281 GGTGGTGGAGCAAGTGTCGTTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
95946311 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
95946341 GGTGGTGGA
1 GGTGGTGGA
95946350 AAAGGCTAGG
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 94 1.00
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:95946901 original size:21 final size:21
Alignment explanation
Indices: 95946875--95946916 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
95946865 GATATCATCG
95946875 ATTAGCTCCACTGCAACTTCA
1 ATTAGCTCCACTGCAACTTCA
* *
95946896 ATTAGCTTCACTGTAACTTCA
1 ATTAGCTCCACTGCAACTTCA
95946917 GGGATATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (21 bp):
ATTAGCTCCACTGCAACTTCA
Found at i:95947448 original size:90 final size:90
Alignment explanation
Indices: 95947227--95947580 Score: 375
Period size: 91 Copynumber: 3.9 Consensus size: 90
95947217 AATAAAAATC
*
95947227 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGATC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
* * * *
95947292 TTTTTACAAACATAAATTGAAAAAAAAAAGA
63 TTTTGAAAAACAGAAATTG---AAAAACAGA
* ** *
95947323 AATTGAAAATATCTCAGC-TGTCCT-GAGGCTGAACTCACCTCTCGCAATATGA-TTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
95947385 GGAAAAAACA-AAATTGAAAAACAGA
66 TG-AAAAACAGAAATTGAAAAACAGA
* * * *
95947410 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGA-TCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
95947475 TTGAAACACAGAAATTGAAGAACAGA
65 TTGAAAAACAGAAATTGAAAAACAGA
* * * * *
95947501 AATGGAAAACACCTCAGCGTCT--T-GAGGTTCAACTCA-C-CTCGCAATATGAGCTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
95947561 TGAAAGACAGAAATTGAAAA
66 TGAAAAACAGAAATTGAAAA
95947581 TACCTCAACG
Statistics
Matches: 224, Mismatches: 28, Indels: 23
0.81 0.10 0.08
Matches are distributed among these distances:
85 41 0.18
86 1 0.00
87 35 0.16
88 4 0.02
89 1 0.00
90 43 0.19
91 48 0.21
92 4 0.02
93 27 0.12
95 4 0.02
96 16 0.07
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.27
Consensus pattern (90 bp):
AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAAACAGAAATTGAAAAACAGA
Found at i:95947634 original size:73 final size:73
Alignment explanation
Indices: 95947489--95948075 Score: 750
Period size: 73 Copynumber: 8.0 Consensus size: 73
95947479 AACACAGAAA
* * * *
95947489 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCA-C-CTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
95947550 GCTGATTTTT
65 GTTGA-TTTT
95947560 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
95947625 GTTGA-TTT
65 GTTGATTTT
* * * * *
95947633 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
95947696 GTTGATTTTT
65 GTTGA-TTTT
* *
95947706 TTGAAAAACAG-AATTGAAAATACCTCAATGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
95947770 GCTGATTTTTT
65 GTTGA--TTTT
*
95947781 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
95947846 GTTGA-TTT
65 GTTGATTTT
* * *
95947854 TTGACAAACA-AAATTGAAATTACCTCAGCGTGTC-TGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
95947917 GTTGATTTTT
65 GTTGA-TTTT
*
95947927 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
95947992 GTTTGA-GTT
65 G-TTGATTTT
* * * *
95948001 TTGACAAACA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
95948065 GTTGATTTT
65 GTTGATTTT
95948074 TT
1 TT
95948076 TAGAAGCATA
Statistics
Matches: 459, Mismatches: 34, Indels: 44
0.85 0.06 0.08
Matches are distributed among these distances:
70 1 0.00
71 93 0.20
72 42 0.09
73 130 0.28
74 79 0.17
75 55 0.12
76 59 0.13
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:95947835 original size:221 final size:221
Alignment explanation
Indices: 95947489--95948074 Score: 915
Period size: 221 Copynumber: 2.7 Consensus size: 221
95947479 AACACAGAAA
* * * *
95947489 TTGAAGAACAGAAATGGAAAACACCTC-AGCGTCTTGAGGTTCAACTCA-C-CTCGCAATATGAG
1 TTGAAAAACAGAAATTGAAAATACCTCAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
95947551 CTGA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 CTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
95947615 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCT-TGAGGTTCAACT
131 CGCAATATGAGTTGATTTTTGACAAAC-AAAATTGAAATTACCTCAGCGTCTCTGAGGCTCAACT
95947679 CACCTATCGCAATATGAGTTGATTTTT
195 CACCTATCGCAATATGAGTTGATTTTT
95947706 TTGAAAAACAG-AATTGAAAATACCTCAATGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAA-GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
95947770 GCTGATTTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
65 GCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
95947835 TCGCAATATGAGTTGATTTTTGACAAACAAAATTGAAATTACCTCAGCGTGTCTGAGGCTCAACT
130 TCGCAATATGAGTTGATTTTTGACAAACAAAATTGAAATTACCTCAGCGTCTCTGAGGCTCAACT
95947900 CACCTATCGCAATATGAGTTGATTTTT
195 CACCTATCGCAATATGAGTTGATTTTT
* *
95947927 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAA-GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
** * * * *
95947992 G-T--TTGAGTTTTGACAA-ACA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACT
65 GCTGATT-TTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACC
95948052 TCTCGCAATATGAGTTGATTTTT
128 TCTCGCAATATGAGTTGATTTTT
95948075 TTAGAAGCAT
Statistics
Matches: 343, Mismatches: 17, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
216 13 0.04
217 11 0.03
218 19 0.06
219 63 0.18
220 48 0.14
221 138 0.40
222 51 0.15
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (221 bp):
TTGAAAAACAGAAATTGAAAATACCTCAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
CTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTGACAAACAAAATTGAAATTACCTCAGCGTCTCTGAGGCTCAACTC
ACCTATCGCAATATGAGTTGATTTTT
Found at i:95948299 original size:14 final size:13
Alignment explanation
Indices: 95948264--95948308 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
95948254 TTGATTTTTG
95948264 AAAAACAGAAATT
1 AAAAACAGAAATT
*
95948277 AAAAGCAGAAATT
1 AAAAACAGAAATT
95948290 GAAAAACAGAAATT
1 -AAAAACAGAAATT
95948304 AAAAA
1 AAAAA
95948309 TACCTGGCGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:95948360 original size:99 final size:101
Alignment explanation
Indices: 95948079--95948450 Score: 431
Period size: 100 Copynumber: 3.8 Consensus size: 101
95948069 ATTTTTTTAG
* * *
95948079 AAGCATAAATTAAAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
1 AAGCAGAAATTGAAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
* *
95948143 CGCAATATGAGTTGA--TTTGAAAAGCAGAATTTGTA
65 CGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAA
* * *
95948178 AGGCAAAAATTGAAAAACAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
1 AAGCAGAAATTGAAAAAC-AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
*
95948243 CGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AA
65 CGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAA
* * * *
95948279 AAGCAGAAATTGAAAAACAGAAATTAAAAATACCT-GGCGTGCCCCGAGGCTCAGCTCACCTCTC
1 AAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC
*
95948343 GCAATATGAGTTGATTTTTGAAAAGCATAAATTG--
66 GCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAA
* *
95948377 AA--A-AAA--G-------GAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTC
1 AAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTC
95948430 TCGCAATATGAGTTGATTTTT
64 TCGCAATATGAGTTGATTTTT
95948451 TTGAAAGATA
Statistics
Matches: 242, Mismatches: 23, Indels: 26
0.83 0.08 0.09
Matches are distributed among these distances:
86 15 0.06
87 2 0.01
89 41 0.17
93 1 0.00
95 3 0.01
96 1 0.00
98 2 0.01
99 72 0.30
100 73 0.30
101 17 0.07
102 15 0.06
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (101 bp):
AAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAA
Found at i:95948449 original size:89 final size:86
Alignment explanation
Indices: 95948277--95948450 Score: 242
Period size: 89 Copynumber: 2.0 Consensus size: 86
95948267 AACAGAAATT
* * *
95948277 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTGGCGTGCCCCGAGGCTCAGCTCACCTCT
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTGGCGTGACCCGAGGCCCAACTCACCTCT
95948342 CGCAATATGAGTTGATTTTTG
66 CGCAATATGAGTTGATTTTTG
* * * *
95948363 AAAAGCATAAATTGAAAAA-AGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTGAAAAACA-GAAATTAAAAATACCT--G-GCGTGACCCGAGGCCCAACTCAC
95948427 CTCTCGCAATATGAGTTGATTTTT
62 CTCTCGCAATATGAGTTGATTTTT
95948451 TTGAAAGATA
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
85 1 0.01
86 33 0.43
88 1 0.01
89 42 0.55
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (86 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTGGCGTGACCCGAGGCCCAACTCACCTCT
CGCAATATGAGTTGATTTTTG
Found at i:95960268 original size:25 final size:23
Alignment explanation
Indices: 95960216--95960270 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
95960206 TATAAATAGT
95960216 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
95960239 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
95960264 AATAGTG
1 AATAGTG
95960271 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:95960372 original size:25 final size:26
Alignment explanation
Indices: 95960344--95960393 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
95960334 TAATATGTAA
*
95960344 ATAATATAGTGTAAAA-A-ATACATAC
1 ATAATATAAT-TAAAATATATACATAC
95960369 ATAATATAATTAAAATATATACATA
1 ATAATATAATTAAAATATATACATA
95960394 AGATAACATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 10 0.45
26 7 0.32
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (26 bp):
ATAATATAATTAAAATATATACATAC
Found at i:95960390 original size:22 final size:22
Alignment explanation
Indices: 95960358--95960399 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
95960348 TATAGTGTAA
*
95960358 AAAATACATACATAATATAATT
1 AAAATACATACATAAGATAATT
*
95960380 AAAATATATACATAAGATAA
1 AAAATACATACATAAGATAA
95960400 CATGTAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAATACATACATAAGATAATT
Found at i:95960466 original size:23 final size:25
Alignment explanation
Indices: 95960415--95960545 Score: 109
Period size: 23 Copynumber: 5.6 Consensus size: 25
95960405 AGAAAAAAAA
*
95960415 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
95960440 ATATATACATAAAATAGTA-T-AAT
1 ATATATACATAATATAGTATTAAAG
* * *
95960463 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
*
95960487 A-ATATAC-TAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
*
95960508 AATATATACATAATATAATATT-AAG
1 -ATATATACATAATATAGTATTAAAG
*
95960533 AAATATA-ATAATA
1 ATATATACATAATA
95960546 ACAAAAAAAG
Statistics
Matches: 86, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
20 1 0.01
21 2 0.02
22 8 0.09
23 36 0.42
24 17 0.20
25 21 0.24
26 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:95960476 original size:48 final size:47
Alignment explanation
Indices: 95960409--95960543 Score: 132
Period size: 46 Copynumber: 2.9 Consensus size: 47
95960399 ACATGTAGAA
* *
95960409 AAAAAAATATATAAATAATATAGTATTAAAGATATATACATAAAATAGT
1 AAAAGAATATATACATAATATAGTATT-AAGA-ATATACATAAAATAGT
* * * * * * *
95960458 ATAA-TATATATACGTAATATAGAATTTAGAATATAC-TAATATATT
1 AAAAGAATATATACATAATATAGTATTAAGAATATACATAAAATAGT
*
95960503 AAAAGAATATATACATAATATAATATTAAGAAATATA-ATAA
1 AAAAGAATATATACATAATATAGTATTAAG-AATATACATAA
95960544 TAACAAAAAA
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
45 10 0.14
46 26 0.38
47 12 0.17
48 18 0.26
49 3 0.04
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (47 bp):
AAAAGAATATATACATAATATAGTATTAAGAATATACATAAAATAGT
Found at i:95961042 original size:18 final size:18
Alignment explanation
Indices: 95961019--95961072 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
95961009 ACAAGTGGTG
95961019 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
95961037 GTGGAG-TAG-GT-G---
1 GTGGAGCAAGTGTGGCTA
95961049 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
95961067 GTGGAG
1 GTGGAG
95961073 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 12 0.43
ACGTcount: A:0.20, C:0.07, G:0.50, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:95961051 original size:30 final size:30
Alignment explanation
Indices: 95961015--95961082 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
95961005 AGGTACAAGT
95961015 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
95961045 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
95961075 GGTGGTGG
1 GGTGGTGG
95961083 CAAAGGCTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.16, C:0.06, G:0.53, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:95963902 original size:12 final size:12
Alignment explanation
Indices: 95963885--95963909 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
95963875 TTGTGTGTTC
95963885 TTTATTTTATTT
1 TTTATTTTATTT
95963897 TTTATTTTATTT
1 TTTATTTTATTT
95963909 T
1 T
95963910 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:95968912 original size:35 final size:35
Alignment explanation
Indices: 95968765--95968894 Score: 172
Period size: 35 Copynumber: 3.7 Consensus size: 35
95968755 TCATCATTTA
* *
95968765 AATACCATACCTACATTTCACAACTCGGTATGGGA-
1 AATACCATACCTACGTTTCACAACTCAGTAT-GGAT
** ** *
95968800 AATGTCATACCTACGTTTCTTAACTCAATATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
*
95968835 AATACCATACCTACGTTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
95968870 AATACCATACCTACGTTTCACAACT
1 AATACCATACCTACGTTTCACAACT
95968895 TTTCCATGGA
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
34 3 0.04
35 78 0.96
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:95981633 original size:76 final size:77
Alignment explanation
Indices: 95981487--95981634 Score: 244
Period size: 76 Copynumber: 1.9 Consensus size: 77
95981477 TCAGATAAGA
* *
95981487 AAGAAAAGTAAAAAAGAGACAGTGGAAAGAAAAAAATATCCATCGTGCTCGAATTGCAAGAAATT
1 AAGAAAAGTAAAAAAGAGACAGTGGAAAGAAAAAAATATCCACCATGCTCGAATTGCAAGAAATT
*
95981552 TGGTCACTCTAC
66 GGGTCACTCTAC
* *
95981564 AAGAAAAGTCAAAAAGAGACAGTGGAAAG-AAAAAATATCCACCATTCTCGAATTGCAAGAAATT
1 AAGAAAAGTAAAAAAGAGACAGTGGAAAGAAAAAAATATCCACCATGCTCGAATTGCAAGAAATT
95981628 GGGTCAC
66 GGGTCAC
95981635 ATTGAGAGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
76 38 0.58
77 28 0.42
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (77 bp):
AAGAAAAGTAAAAAAGAGACAGTGGAAAGAAAAAAATATCCACCATGCTCGAATTGCAAGAAATT
GGGTCACTCTAC
Found at i:95985488 original size:122 final size:120
Alignment explanation
Indices: 95985273--95985497 Score: 317
Period size: 122 Copynumber: 1.9 Consensus size: 120
95985263 CCAAAATAAC
* * *
95985273 CATGAGAATGAAAATAATAATATCATGGGTATAGGGTTTTCCTAATCTTGATTTAACACGGAATG
1 CATGAGAATGAAAATAATAATATCATGGGTATAGGGTTTTCCTAAACTCGATTTAACACGAAATG
*
95985338 TATGATAACTAACCTAAGAATGCAAATTAAATGATAGACATTAGTATAGTAATAG
66 TATGATAACTAACCTAAGAATACAAATTAAATGATAGACATTAGTATAGTAATAG
* * * * * *
95985393 CATGAGAAT-AAGCATAGTAATGTCATGGGTATGGGGTTTTTCTAAGAACTCGATTTAACATGAA
1 CATGAGAATGAA-AATAATAATATCATGGGTATAGGGTTTTCCT-A-AACTCGATTTAACACGAA
*
95985457 ATGTATGATAACTAACTTAAGAATACAAATTAAATGATAGA
63 ATGTATGATAACTAACCTAAGAATACAAATTAAATGATAGA
95985498 ATAATGAGCA
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
119 2 0.02
120 35 0.38
121 1 0.01
122 53 0.58
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (120 bp):
CATGAGAATGAAAATAATAATATCATGGGTATAGGGTTTTCCTAAACTCGATTTAACACGAAATG
TATGATAACTAACCTAAGAATACAAATTAAATGATAGACATTAGTATAGTAATAG
Done.