Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 297 of 311
Found at i:96719740 original size:18 final size:18
Alignment explanation
Indices: 96719701--96719739 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
96719691 TTTTGAGCAA
*
96719701 TTTTAATTTTTTATGTTC
1 TTTTAATTTTTTATCTTC
*
96719719 TTTTAATTTTTTTTCTT-
1 TTTTAATTTTTTATCTTC
96719736 TTTT
1 TTTT
96719740 TTTCCATTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.13, C:0.05, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTTAATTTTTTATCTTC
Found at i:96720194 original size:20 final size:21
Alignment explanation
Indices: 96720169--96720207 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
96720159 TATAATACAT
*
96720169 TAATAT-AAATAACTAAAATA
1 TAATATAAAATAAATAAAATA
96720189 TAATATAAAATAAATAAAA
1 TAATATAAAATAAATAAAA
96720208 GTGATTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (21 bp):
TAATATAAAATAAATAAAATA
Found at i:96722092 original size:23 final size:23
Alignment explanation
Indices: 96722051--96722107 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
96722041 CTAATATTTC
*
96722051 AATAATTTTAATAAAAAATTTTA
1 AATAATTTTAATAAAAAATTATA
*
96722074 AATAA-TTTAATAATTAAATTATA
1 AATAATTTTAATAA-AAAATTATA
*
96722097 AA-ATTTTTAAT
1 AATAATTTTAAT
96722108 TAAATGAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 9 0.31
23 20 0.69
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
AATAATTTTAATAAAAAATTATA
Found at i:96728666 original size:20 final size:20
Alignment explanation
Indices: 96728630--96728667 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
96728620 GTTTTGAAAT
*
96728630 AGTTTATAATGATAAAATAA
1 AGTTTATAATGAGAAAATAA
96728650 AGTTT-TAATTGAGAAAAT
1 AGTTTATAA-TGAGAAAAT
96728668 TAGTTCAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (20 bp):
AGTTTATAATGAGAAAATAA
Found at i:96729182 original size:35 final size:36
Alignment explanation
Indices: 96729118--96729242 Score: 139
Period size: 35 Copynumber: 3.5 Consensus size: 36
96729108 CATGGAAAAG
* **
96729118 TGTGAAACATAAGGTATAATATTAA-CCATACTGAGT
1 TGTGAAACGT-AGGTATGGTATTAATCCATACTGAGT
* * * *
96729154 TATAAAACGTAGGTATGGTA-TCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATTAATCCATACTGAGT
*
96729189 TGTGAAACGTAGGTATGGTATTAAT-CATATTGAGT
1 TGTGAAACGTAGGTATGGTATTAATCCATACTGAGT
*
96729224 TGCGAAACGTAGGTATGGT
1 TGTGAAACGTAGGTATGGT
96729243 TAATCGGATC
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
34 2 0.03
35 62 0.84
36 10 0.14
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (36 bp):
TGTGAAACGTAGGTATGGTATTAATCCATACTGAGT
Found at i:96731413 original size:35 final size:35
Alignment explanation
Indices: 96731318--96731475 Score: 140
Period size: 35 Copynumber: 4.5 Consensus size: 35
96731308 ATCGAAATGC
** * *
96731318 CATACCTACATTTCACAACTCGGTATGGGA-AATGT
1 CATACCTATGTTTCACAACTCAGTAT-GGATAATAT
* * ** *
96731353 CATACCTACGATTCTTAACTAAGTATGGATAATAT
1 CATACCTATGTTTCACAACTCAGTATGGATAATAT
* * * *
96731388 CATACCTGTGTTTCACAACTCAGTATGGTTGATAC
1 CATACCTATGTTTCACAACTCAGTATGGATAATAT
*
96731423 CATACCTATGTTTCACAACTCAGTATGGTTAATA-
1 CATACCTATGTTTCACAACTCAGTATGGATAATAT
*
96731457 CTATACCTTACGTTTCACA
1 C-ATACC-TATGTTTCACA
96731476 CTTTTCCATG
Statistics
Matches: 101, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
34 4 0.04
35 87 0.86
36 10 0.10
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (35 bp):
CATACCTATGTTTCACAACTCAGTATGGATAATAT
Found at i:96733397 original size:37 final size:37
Alignment explanation
Indices: 96733356--96733561 Score: 178
Period size: 37 Copynumber: 5.0 Consensus size: 37
96733346 TAGTTTTAGC
96733356 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
96733393 TACACTTATCTGATCACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 T--AC--A-C---T----TATCTGATCAAGAAACAAAGTGATAAGTGGT
96733442 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTAGTTTT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGT-G--G---T
*
96733485 AGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGC
1 ---TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
****
96733525 TACACTTATCTGATCAAGTGGTAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
96733562 AGCCTAGCTA
Statistics
Matches: 142, Mismatches: 6, Indels: 42
0.75 0.03 0.22
Matches are distributed among these distances:
37 61 0.43
38 1 0.01
39 2 0.01
40 1 0.01
41 2 0.01
42 1 0.01
43 2 0.01
44 1 0.01
45 3 0.02
46 34 0.24
47 2 0.01
49 32 0.23
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.29
Consensus pattern (37 bp):
TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
Found at i:96733412 original size:12 final size:12
Alignment explanation
Indices: 96733395--96733420 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
96733385 TAAGTGGTTA
96733395 CACTTATCTGAT
1 CACTTATCTGAT
96733407 CACTTATCTGAT
1 CACTTATCTGAT
96733419 CA
1 CA
96733421 AGAAACAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (12 bp):
CACTTATCTGAT
Found at i:96733529 original size:83 final size:82
Alignment explanation
Indices: 96733354--96733600 Score: 345
Period size: 83 Copynumber: 3.0 Consensus size: 82
96733344 GGTAGTTTTA
* *
96733354 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTATCTGATCACTTATCTGAT
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGG-TA-GCTTAGCT-A-CACTTATCTGAT
96733419 CAAGAAACAAAGTGATAAGTG
62 CAAGAAACAAAGTGATAAGTG
* *
96733440 GTTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAA
96733505 GAAACAAAGTGATAAGTG
65 GAAACAAAGTGATAAGTG
**** *
96733523 GCTACACTTATCTGATCAAGTGGTAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAG
*
96733588 -GAC-AAGTGATAAG
66 AAACAAAGTGATAAG
96733601 AGGTCATATG
Statistics
Matches: 148, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
80 10 0.07
81 2 0.01
82 22 0.15
83 69 0.47
84 1 0.01
85 7 0.05
86 37 0.25
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (82 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAG
AAACAAAGTGATAAGTG
Found at i:96736738 original size:276 final size:276
Alignment explanation
Indices: 96736243--96736788 Score: 1011
Period size: 276 Copynumber: 2.0 Consensus size: 276
96736233 CATATGTAAC
96736243 ATTCTATACAATTCCACTATTATTTATAATTCATTCAAAACTATCTACTTGAGTCGTAGTCACTA
1 ATTCTATACAATTCCACTATTATTTATAATTCATTCAAAACTATCTACTTGAGTCGTAGTCACTA
* *
96736308 AATTATTTATATCTCAAGATACAGGATTCCAAATTAAAAAAAGCTTGATGTTTCTGAAACTAGAC
66 AATTATTTATATATCAAGATACAGAATTCCAAATTAAAAAAAGCTTGATGTTTCTGAAACTAGAC
*
96736373 TCAAATACCTTTCTACCATAAAATTTTCAGAATTTTTGGTTCAGCCAATAAGTACAGTAAAATCT
131 TCAAATACCTTTCTACCATAAAATTTTCAGAAATTTTGGTTCAGCCAATAAGTACAGTAAAATCT
* *
96736438 TCAAACTTACCCCTATTGTGCTGTCTGATAGCTTCAACCTTTCTTTGCTAAAAATTAACAATCTC
196 TCAAACTTACCCCTATTCTGCTGTCTGACAGCTTCAACCTTTCTTTGCTAAAAATTAACAATCTC
96736503 TTAGTAAAAACTTTGG
261 TTAGTAAAAACTTTGG
* *
96736519 ATTCTATATAATTCCACTATTATTTATAGTTCATTCAAAACTATCTACTTGAGTCGTAGTCACTA
1 ATTCTATACAATTCCACTATTATTTATAATTCATTCAAAACTATCTACTTGAGTCGTAGTCACTA
*
96736584 AATTATTTATATATCAAGATACAGAATTCCAAATTAAAAAAAGCTTGATGTTTCTGAAACTATAC
66 AATTATTTATATATCAAGATACAGAATTCCAAATTAAAAAAAGCTTGATGTTTCTGAAACTAGAC
96736649 TCAAATACCTTTCTACCATAAAATTTTCAGAAATTTTGGTTCAGCCAATAAGTACAGTAAAATCT
131 TCAAATACCTTTCTACCATAAAATTTTCAGAAATTTTGGTTCAGCCAATAAGTACAGTAAAATCT
*
96736714 TCAAACTTACCCCTATTCTGCTGTCTGACAGCTTCAACCTTTCTTTGCTAAAAATTAACTATCTC
196 TCAAACTTACCCCTATTCTGCTGTCTGACAGCTTCAACCTTTCTTTGCTAAAAATTAACAATCTC
96736779 TTAGTAAAAA
261 TTAGTAAAAA
96736789 AAATTGATGA
Statistics
Matches: 261, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
276 261 1.00
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (276 bp):
ATTCTATACAATTCCACTATTATTTATAATTCATTCAAAACTATCTACTTGAGTCGTAGTCACTA
AATTATTTATATATCAAGATACAGAATTCCAAATTAAAAAAAGCTTGATGTTTCTGAAACTAGAC
TCAAATACCTTTCTACCATAAAATTTTCAGAAATTTTGGTTCAGCCAATAAGTACAGTAAAATCT
TCAAACTTACCCCTATTCTGCTGTCTGACAGCTTCAACCTTTCTTTGCTAAAAATTAACAATCTC
TTAGTAAAAACTTTGG
Found at i:96738523 original size:21 final size:21
Alignment explanation
Indices: 96738457--96738523 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
96738447 GTTTAATTTT
* *
96738457 ATAATTTTTTAATTTCAT-AAT
1 ATAATTTTTTAATAT-ATAAAA
* *
96738478 ATAATGTTTATTAA-A-AGAAAC
1 ATAAT-TTT-TTAATATATAAAA
96738499 ATAATTTTTTAATATATAAAA
1 ATAATTTTTTAATATATAAAA
96738520 ATAA
1 ATAA
96738524 AATTTAAGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 20 0.56
22 3 0.08
23 4 0.11
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (21 bp):
ATAATTTTTTAATATATAAAA
Found at i:96739348 original size:19 final size:19
Alignment explanation
Indices: 96739324--96739372 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
96739314 GGGAAATTTA
96739324 CATATATGATAGGTTTGGC
1 CATATATGATAGGTTTGGC
96739343 CATATATGATAGGTTTGGC
1 CATATATGATAGGTTTGGC
96739362 CATATATGATA
1 CATATATGATA
96739373 ATATACCTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (19 bp):
CATATATGATAGGTTTGGC
Found at i:96760266 original size:11 final size:11
Alignment explanation
Indices: 96760247--96760289 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
96760237 ATATATATAT
*
96760247 ATATGAATTTA
1 ATATAAATTTA
96760258 ATATAAATTTA
1 ATATAAATTTA
96760269 ATATATAATTTTA
1 ATATA-AA-TTTA
*
96760282 CTATAAAT
1 ATATAAAT
96760290 AAACTTGGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 16 0.57
12 4 0.14
13 8 0.29
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (11 bp):
ATATAAATTTA
Found at i:96762994 original size:14 final size:15
Alignment explanation
Indices: 96762970--96762998 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
96762960 GGCCTGCCCG
96762970 TATTAATTTTTATAT
1 TATTAATTTTTATAT
96762985 TATT-ATTTTTATAT
1 TATTAATTTTTATAT
96762999 AATTTTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TATTAATTTTTATAT
Found at i:96764126 original size:17 final size:18
Alignment explanation
Indices: 96764093--96764126 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
96764083 TTAGCTTTCT
96764093 TGTTTTCTTTTCGCATTG
1 TGTTTTCTTTTCGCATTG
*
96764111 TGTTTT-TTTTCTCATT
1 TGTTTTCTTTTCGCATT
96764127 ATTTATAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.06, C:0.15, G:0.12, T:0.68
Consensus pattern (18 bp):
TGTTTTCTTTTCGCATTG
Found at i:96771392 original size:17 final size:18
Alignment explanation
Indices: 96771350--96771394 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
96771340 CTTTATTTTA
96771350 TTATTTATTGTTCTAAAATT
1 TTATTTATTGTTCT--AATT
*
96771370 TAATTTATTGTTCT-ATT
1 TTATTTATTGTTCTAATT
96771387 TTATTTAT
1 TTATTTAT
96771395 CTTAGTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 10 0.43
20 13 0.57
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.64
Consensus pattern (18 bp):
TTATTTATTGTTCTAATT
Found at i:96777511 original size:20 final size:20
Alignment explanation
Indices: 96777486--96777533 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
96777476 CCTCAACAGT
*
96777486 AAAAAAAATTGAAAAAGAAA
1 AAAAAAAACTGAAAAAGAAA
* *
96777506 AAAAAACACTGAAAACGAAA
1 AAAAAAAACTGAAAAAGAAA
96777526 AAAAAAAA
1 AAAAAAAA
96777534 AATGGGTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.79, C:0.06, G:0.08, T:0.06
Consensus pattern (20 bp):
AAAAAAAACTGAAAAAGAAA
Found at i:96777887 original size:26 final size:26
Alignment explanation
Indices: 96777831--96777888 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
96777821 GTTGTTAGTT
* * *
96777831 ATTAATATTGTTAGTAAAAAATCATT
1 ATTATTATTGTTAGTAAAAAACCATA
*
96777857 GTTATTATTGTTAGTAAAAAACCATA
1 ATTATTATTGTTAGTAAAAAACCATA
96777883 ATTATT
1 ATTATT
96777889 GTTAGTTATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (26 bp):
ATTATTATTGTTAGTAAAAAACCATA
Found at i:96780084 original size:22 final size:22
Alignment explanation
Indices: 96780056--96780101 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
96780046 TGTATCATGT
96780056 CAATAGTGAAGGACATGCCGAC
1 CAATAGTGAAGGACATGCCGAC
96780078 CAATAGTGAAGGACATGCCGAC
1 CAATAGTGAAGGACATGCCGAC
96780100 CA
1 CA
96780102 TTAAAGTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.24, G:0.26, T:0.13
Consensus pattern (22 bp):
CAATAGTGAAGGACATGCCGAC
Found at i:96782614 original size:17 final size:17
Alignment explanation
Indices: 96782592--96782630 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
96782582 CGGTAATAGT
96782592 ATGTTCCAATTTA-ATTA
1 ATGTTCCAA-TTAGATTA
*
96782609 ATGTTCTAATTAGATTA
1 ATGTTCCAATTAGATTA
96782626 ATGTT
1 ATGTT
96782631 GTAATGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (17 bp):
ATGTTCCAATTAGATTA
Found at i:96783201 original size:72 final size:72
Alignment explanation
Indices: 96783077--96783210 Score: 223
Period size: 72 Copynumber: 1.9 Consensus size: 72
96783067 GATGATCCCG
* *
96783077 GGAAATTGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCGAATGTGAATGCGATAAC
1 GGAAATAGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCAAATGTGAATGCGATAAC
96783142 GAGCCCA
66 GAGCCCA
* * *
96783149 GGAAATAGTCATTGCCTGCCAAATCCGTATGATAAGAAGTATCAGTCAAATGTGAATGCGAT
1 GGAAATAGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCAAATGTGAATGCGAT
96783211 CGCTCGGACT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 57 1.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (72 bp):
GGAAATAGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCAAATGTGAATGCGATAAC
GAGCCCA
Found at i:96785398 original size:145 final size:145
Alignment explanation
Indices: 96785090--96786124 Score: 1364
Period size: 145 Copynumber: 7.0 Consensus size: 145
96785080 TATTTTCGTA
* * * * * *
96785090 TATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGTTTTTTTATATTA
1 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGT-ATTTTTTATATT-
* * *
96785155 ATTTAATAAATAACCCTGATTTTGGCACTTTCTTCGTATTTTTTTATTTTCGTATCTTATTTTTT
64 TTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA----TTT-TTTTCGTATCTTATTTTTT
96785220 AAAATATATTATTGTT-GTATTT
124 AAAATATATTATT-TTCGTATTT
96785242 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTT
1 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTT
* * *
96785307 TTAATAAATAACCCTAATTTTAGCATTTTATTCGTATTTTTTTCATATCTTATTTTTTAAAATAT
66 TTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTTATTTTTTAAAATAT
96785372 ATTATTTTCGTATTT
131 ATTATTTTCGTATTT
* *
96785387 TATTTCTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTATTATTTATATTTT
1 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTT
* *
96785452 TTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCATATATTATTTTTTAAAATAT
66 TTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTTATTTTTTAAAATAT
* *
96785517 ATTATTTTTGTATAT
131 ATTATTTTCGTATTT
* * * * * * *
96785532 TATTT-TTTATTTTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGTTTTTTATATTAA
1 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATT-T
* *
96785596 TTTAATAAATAACCTTGATTTT-GACACTTTCTTCGTATTTTTATTTTCGTATCTTATTTTTTAA
65 TTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTA--TTT-TTTTCGTATCTTATTTTTTAA
96785660 AATATATTATTTTCGTATTT
126 AATATATTATTTTCGTATTT
*
96785680 TATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTT
1 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTT
* * *
96785745 TTCAATAAATAACCCTGATTTTAGCACTTTATTCTTACTTTTTTCGTATATTATTTTTTAAAATA
66 TT-AATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTTATTTTTTAAAATA
96785810 TATTATTTTCGTATTT
130 TATTATTTTCGTATTT
* * * * * *
96785826 TATGTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTACTACTTAAGTGTTTCTTTATATT
1 TAT-TTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTT-TTTATATT
* * *
96785890 AATGTAATAAATAACCCTGATTTT-GACACTTTCTTCGTAATTTTTTTTATTTTCGTATCTTATT
64 -TTTTAATAAATAACCCTGATTTTAG-CACTTTATTCGT-A-----TTT-TTTTCGTATCTTATT
96785954 TTTTAAAATATATTATTTTCGTATTT
120 TTTTAAAATATATTATTTTCGTATTT
* * *
96785980 TATTTCTTTATATTATTTTAGTACTTAATGTTTCAAATGTATTATTTAAATGTTTTTTATATTTT
1 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATA-TTT
* * * *
96786045 TTTAATAAATAACCCTAATTTTAGCACTTTATTC--ATATTTTTCGTATATTATTTATTAAAATA
65 TTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTTATTTTTTAAAATA
96786108 TATTATTTTCGTATTT
130 TATTATTTTCGTATTT
96786124 T
1 T
96786125 GTTTTAGCAT
Statistics
Matches: 786, Mismatches: 74, Indels: 54
0.86 0.08 0.06
Matches are distributed among these distances:
144 92 0.12
145 215 0.27
146 89 0.11
147 44 0.06
148 48 0.06
149 79 0.10
150 35 0.04
151 11 0.01
152 46 0.06
153 39 0.05
154 88 0.11
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (145 bp):
TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTT
TTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTTATTTTTTAAAATAT
ATTATTTTCGTATTT
Found at i:96785546 original size:12 final size:13
Alignment explanation
Indices: 96785514--96785549 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
96785504 TTTTTTAAAA
96785514 TATATTATTTTTG
1 TATATTATTTTTG
96785527 TATATTATTTTT-
1 TATATTATTTTTG
*
96785539 TATTTTATTTT
1 TATATTATTTT
96785550 AGCAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (13 bp):
TATATTATTTTTG
Found at i:96785995 original size:300 final size:292
Alignment explanation
Indices: 96785090--96786216 Score: 1495
Period size: 300 Copynumber: 3.9 Consensus size: 292
96785080 TATTTTCGTA
* * * * * *
96785090 TATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGTTTTTTTATATTA
1 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGT-ATTTTTTATATT-
* * * * *
96785155 ATTTAATAAATAACCCTGATTTTGGCACTTTCTTCGTATTTTTTTATTTTCGTATCTTATTTTTT
64 TTTTAATAAATAACCCTGATTTTAGCACTTTATTC----TTATTT-TTTTCGTATATTATTTTTT
* * *
96785220 AAAATATATTATTGTT-GTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTAT
124 AAAATATATTATT-TTCGTATTTTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTAT
* * * * *
96785284 TATTTAAGTATTTTTTATATT-TTTTAATAAATAACCCTAATTTT-AGCATTTTATTCGTA--TT
187 TA-TTAAGTGTTTTTTATATTAATTTAATAAATAACCCTGATTTTGA-CACTTTCTTCGTATTTT
*
96785345 T-TTTTCATATCTTATTTTTTAAAATATATTATTTTCGTATTT
250 TATTTTCGTATCTTATTTTTTAAAATATATTATTTTCGTATTT
* *
96785387 TATTTCTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTATTATTTATATTTT
1 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTT
* *
96785452 TTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCATATATTATTTTTTAAAATAT
66 TTAATAAATAACCCTGATTTTAGCACTTTATTCTTATTTTTTTCGTATATTATTTTTTAAAATAT
* * *
96785517 ATTATTTTTGTATATTATTTTTTATTTTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGT
131 ATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTAT-TAAGT
*
96785582 GTTTTTTATATTAATTTAATAAATAACCTTGATTTTGACACTTTCTTCGTATTTTTATTTTCGTA
195 GTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATTTTTATTTTCGTA
96785647 TCTTATTTTTTAAAATATATTATTTTCGTATTT
260 TCTTATTTTTTAAAATATATTATTTTCGTATTT
*
96785680 TATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTT
1 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTT
*
96785745 TTCAATAAATAACCCTGATTTTAGCACTTTATTCTTACTTTTTTCGTATATTATTTTTTAAAATA
66 TT-AATAAATAACCCTGATTTTAGCACTTTATTCTTATTTTTTTCGTATATTATTTTTTAAAATA
*
96785810 TATTATTTTCGTATTTTATGTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTACTACTTAA
130 TATTATTTTCGTATTTTAT-TTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTA-TTAA
*
96785875 GTGTTTCTTTATATTAATGTAATAAATAACCCTGATTTTGACACTTTCTTCGTAATTTTTTTTAT
193 GTGTTT-TTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGT-A---TTTTTAT
96785940 TTTCGTATCTTATTTTTTAAAATATATTATTTTCGTATTT
253 TTTCGTATCTTATTTTTTAAAATATATTATTTTCGTATTT
* * *
96785980 TATTTCTTTATATTATTTTAGTACTTAATGTTTCAAATGTATTATTTAAATGTTTTTTATATTTT
1 TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATA-TTT
* * *
96786045 TTTAATAAATAACCCTAATTTTAGCACTTTATTC--ATATTTTTCGTATATTATTTATTAAAATA
65 TTTAATAAATAACCCTGATTTTAGCACTTTATTCTTATTTTTTTCGTATATTATTTTTTAAAATA
* * * *
96786108 TATTATTTTCG-----TA-----T-T-TTGTTTTAGCATAAAATCTTTCAAATGTATTATTTAAA
130 TATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTA-TTAAG
* * * *
96786161 T-TTTTTTATATTAATTTAATAAATAACCCTGACTTTGGCACCTTGTTCGTATTTTT
194 TGTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATTTTT
96786217 TAATTTTCAA
Statistics
Matches: 756, Mismatches: 58, Indels: 50
0.88 0.07 0.06
Matches are distributed among these distances:
279 5 0.01
282 1 0.00
283 41 0.05
284 3 0.00
285 33 0.04
286 1 0.00
287 1 0.00
288 1 0.00
289 52 0.07
290 71 0.09
291 5 0.01
292 3 0.00
293 106 0.14
294 76 0.10
295 79 0.10
296 55 0.07
297 46 0.06
298 37 0.05
300 134 0.18
301 6 0.01
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (292 bp):
TATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTT
TTAATAAATAACCCTGATTTTAGCACTTTATTCTTATTTTTTTCGTATATTATTTTTTAAAATAT
ATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTAAGTG
TTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATTTTTATTTTCGTAT
CTTATTTTTTAAAATATATTATTTTCGTATTT
Found at i:96786723 original size:14 final size:16
Alignment explanation
Indices: 96786704--96786744 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
96786694 AAAAAAATTA
96786704 TCTTTTT-TTTCC-CT
1 TCTTTTTCTTTCCTCT
96786718 TCTTTTTCCTTTCCTCT
1 TCTTTTT-CTTTCCTCT
*
96786735 TCTTCTTCTT
1 TCTTTTTCTT
96786745 CTTCTCCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 7 0.30
16 8 0.35
17 8 0.35
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (16 bp):
TCTTTTTCTTTCCTCT
Found at i:96786839 original size:14 final size:14
Alignment explanation
Indices: 96786811--96786870 Score: 65
Period size: 13 Copynumber: 4.5 Consensus size: 14
96786801 TCCTTCTCCC
96786811 CTTCTTTTTCT-TT
1 CTTCTTTTTCTCTT
96786824 CTTCTTTTTCTCTT
1 CTTCTTTTTCTCTT
**
96786838 CTTC-TCCT-TCTT
1 CTTCTTTTTCTCTT
96786850 -TTCTTTTTCTCCTT
1 CTTCTTTTTCT-CTT
96786864 CTTCTTT
1 CTTCTTT
96786871 GTTCCCGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
11 3 0.08
12 6 0.16
13 14 0.37
14 9 0.24
15 6 0.16
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
CTTCTTTTTCTCTT
Found at i:96786840 original size:3 final size:3
Alignment explanation
Indices: 96786811--96786869 Score: 50
Period size: 3 Copynumber: 20.0 Consensus size: 3
96786801 TCCTTCTCCC
* * *
96786811 CTT CTT TTT CTTT CTT CTT TTT C-T CTT CTT CTC CTT CTT -TT CTT
1 CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* *
96786855 TTT CTC CTT CTT CTT
1 CTT CTT CTT CTT CTT
96786870 TGTTCCCGAA
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
2 4 0.09
3 36 0.84
4 3 0.07
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
CTT
Found at i:96786849 original size:20 final size:18
Alignment explanation
Indices: 96786812--96786866 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
96786802 CCTTCTCCCC
*
96786812 TTCTTTTTCTTTCTTCTTT
1 TTCTTTTTC-TCCTTCTTT
96786831 TTCTCTTCTTCTCCTTC-TT
1 TTCT-TT-TTCTCCTTCTTT
96786850 TTCTTTTTCTCCTTCTT
1 TTCTTTTTCTCCTTCTT
96786867 CTTTGTTCCC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
17 9 0.28
18 3 0.09
19 10 0.31
20 7 0.22
21 3 0.09
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
TTCTTTTTCTCCTTCTTT
Found at i:96786854 original size:17 final size:17
Alignment explanation
Indices: 96786834--96786866 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
96786824 CTTCTTTTTC
96786834 TCTTCTTCTCCTTCTTT
1 TCTTCTTCTCCTTCTTT
*
96786851 TCTTTTTCTCCTTCTT
1 TCTTCTTCTCCTTCTT
96786867 CTTTGTTCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (17 bp):
TCTTCTTCTCCTTCTTT
Found at i:96787062 original size:19 final size:18
Alignment explanation
Indices: 96787037--96787081 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
96787027 CCCATTTTTT
*
96787037 ATTTTTTTTT-GTTTTCA
1 ATTTTTTTTTCTTTTTCA
*
96787054 GTGTTTTTTTTCTTTTTCA
1 AT-TTTTTTTTCTTTTTCA
96787073 ATTTTTTTT
1 ATTTTTTTT
96787082 ACGGTTGAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 15 0.65
19 7 0.30
ACGTcount: A:0.09, C:0.07, G:0.07, T:0.78
Consensus pattern (18 bp):
ATTTTTTTTTCTTTTTCA
Found at i:96816213 original size:8 final size:8
Alignment explanation
Indices: 96816200--96816226 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
96816190 TTGCTTCCTT
96816200 TATTTCCA
1 TATTTCCA
96816208 TATTTCCA
1 TATTTCCA
96816216 TATTTCCA
1 TATTTCCA
96816224 TAT
1 TAT
96816227 CCATATCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.22, G:0.00, T:0.52
Consensus pattern (8 bp):
TATTTCCA
Found at i:96816644 original size:26 final size:27
Alignment explanation
Indices: 96816613--96816671 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
96816603 TAATTGTTTA
*
96816613 AAATTTCA-TGAACTTTTTATATTTTT
1 AAATTTCATTCAACTTTTTATATTTTT
* **
96816639 AAATTTTATTTCATTTTTTTATATTTTT
1 AAATTTCA-TTCAACTTTTTATATTTTT
96816667 AAATT
1 AAATT
96816672 ATTTTAATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 7 0.26
28 20 0.74
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (27 bp):
AAATTTCATTCAACTTTTTATATTTTT
Found at i:96816689 original size:28 final size:28
Alignment explanation
Indices: 96816630--96816689 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
96816620 ATGAACTTTT
* * * *
96816630 TATATTTTTAAATTTTATTTCATTTTTT
1 TATATTTTTAAATTATATTTAATTATTA
96816658 TATATTTTTAAATTAT-TTTAATCTATTA
1 TATATTTTTAAATTATATTTAAT-TATTA
96816686 TATA
1 TATA
96816690 AAAAAATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (28 bp):
TATATTTTTAAATTATATTTAATTATTA
Found at i:96819933 original size:16 final size:15
Alignment explanation
Indices: 96819912--96819955 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 15
96819902 TTATTTATTA
96819912 AATAAAAATAATTTT
1 AATAAAAATAATTTT
*
96819927 AATTAAAATATTATTTT
1 AA-TAAAA-ATAATTTT
96819944 AAT-AAAATAATT
1 AATAAAAATAATT
96819956 AAATTTTACG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 5 0.20
15 5 0.20
16 6 0.24
17 9 0.36
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
AATAAAAATAATTTT
Found at i:96819944 original size:17 final size:16
Alignment explanation
Indices: 96819912--96819952 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
96819902 TTATTTATTA
96819912 AATAAAA-ATAATTTT
1 AATAAAATATAATTTT
*
96819927 AATTAAAATATTATTTT
1 AA-TAAAATATAATTTT
96819944 AATAAAATA
1 AATAAAATA
96819953 ATTAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 2 0.09
16 12 0.52
17 9 0.39
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATAAAATATAATTTT
Found at i:96820027 original size:24 final size:26
Alignment explanation
Indices: 96820000--96820061 Score: 92
Period size: 28 Copynumber: 2.4 Consensus size: 26
96819990 TATTACCAGA
96820000 AAATA-ATC-TTCAACAAGTGTAATT
1 AAATATATCATTCAACAAGTGTAATT
96820024 AAATATATCAATTTCAACAAGTGTAATT
1 AAATATATC-A-TTCAACAAGTGTAATT
96820052 AAATATATCA
1 AAATATATCA
96820062 ATTTAAGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
24 5 0.15
25 3 0.09
27 1 0.03
28 25 0.74
ACGTcount: A:0.48, C:0.11, G:0.06, T:0.34
Consensus pattern (26 bp):
AAATATATCATTCAACAAGTGTAATT
Found at i:96820048 original size:28 final size:28
Alignment explanation
Indices: 96820008--96820065 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
96819998 GAAAATAATC
96820008 TTCAACAAGTGTAATTAAATATATCAAT
1 TTCAACAAGTGTAATTAAATATATCAAT
96820036 TTCAACAAGTGTAATTAAATATATCAAT
1 TTCAACAAGTGTAATTAAATATATCAAT
96820064 TT
1 TT
96820066 AAGAAACTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (28 bp):
TTCAACAAGTGTAATTAAATATATCAAT
Found at i:96820076 original size:28 final size:28
Alignment explanation
Indices: 96820008--96820077 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
96819998 GAAAATAATC
* *
96820008 TTCAACAAGTGTAATTAAATATATCAAT
1 TTCAAAAACTGTAATTAAATATATCAAT
* *
96820036 TTCAACAAGTGTAATTAAATATATCAAT
1 TTCAAAAACTGTAATTAAATATATCAAT
96820064 TT-AAGAAACTGTAA
1 TTCAA-AAACTGTAA
96820078 AGTTCTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 2 0.05
28 37 0.95
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (28 bp):
TTCAAAAACTGTAATTAAATATATCAAT
Found at i:96820995 original size:34 final size:34
Alignment explanation
Indices: 96820952--96821020 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
96820942 AGAAGGGTGA
*
96820952 TGCTTTAAATTTTTGAGTGTTTTAAAACTTTTTT
1 TGCTTTAAATTTTTGAGTGTTCTAAAACTTTTTT
* *
96820986 TGCTTTAAATTTTTGGGTGTTCTAAAATTTTTTT
1 TGCTTTAAATTTTTGAGTGTTCTAAAACTTTTTT
96821020 T
1 T
96821021 TAAGGTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.22, C:0.06, G:0.13, T:0.59
Consensus pattern (34 bp):
TGCTTTAAATTTTTGAGTGTTCTAAAACTTTTTT
Found at i:96823136 original size:29 final size:29
Alignment explanation
Indices: 96823100--96823188 Score: 74
Period size: 29 Copynumber: 3.0 Consensus size: 29
96823090 TTAGTCTAAT
96823100 GTGCAATTTGATACATGAACTTTGATTTG
1 GTGCAATTTGATACATGAACTTTGATTTG
* * *
96823129 GTGCAATTAT-ACACATGAAATTTAAATTGTG
1 GTGCAATT-TGATACATGAACTTT-GATT-TG
* *
96823160 GTTC-ATATGTATACATGAAACTTTGATTT
1 GTGCAATTTG-ATACATG-AACTTTGATTT
96823189 TAATTCAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
29 20 0.43
30 7 0.15
31 14 0.30
32 5 0.11
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (29 bp):
GTGCAATTTGATACATGAACTTTGATTTG
Found at i:96824645 original size:17 final size:17
Alignment explanation
Indices: 96824623--96824658 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
96824613 GATAAAGGTA
96824623 TGTATAATCTTTAGACT
1 TGTATAATCTTTAGACT
96824640 TGTATAATCTTTAGACT
1 TGTATAATCTTTAGACT
96824657 TG
1 TG
96824659 AGATCACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (17 bp):
TGTATAATCTTTAGACT
Found at i:96826041 original size:29 final size:29
Alignment explanation
Indices: 96825999--96826081 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
96825989 TGTTTGTCCC
96825999 ATGTTACATTTTAGTCACTTATGTTTGAA
1 ATGTTACATTTTAGTCACTTATGTTTGAA
96826028 ATGTTACATTTTAGTCACTTATGTTTGAA
1 ATGTTACATTTTAGTCACTTATGTTTGAA
*
96826057 ATGTTACGTTTTAGTCACTTATGTT
1 ATGTTACATTTTAGTCACTTATGTT
96826082 ATGATTTTGT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.49
Consensus pattern (29 bp):
ATGTTACATTTTAGTCACTTATGTTTGAA
Found at i:96833579 original size:21 final size:22
Alignment explanation
Indices: 96833550--96833596 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
96833540 CAGAAGGAGT
*
96833550 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
96833572 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
96833593 GAGT
1 GAGT
96833597 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:96842441 original size:19 final size:18
Alignment explanation
Indices: 96842412--96842452 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 18
96842402 GTGGATAATA
96842412 TTTTAATATTTTATATATTT
1 TTTTAATATTTTA-A-ATTT
96842432 TTTTAA-ATTTTAAATTT
1 TTTTAATATTTTAAATTT
96842449 TTTT
1 TTTT
96842453 CATGAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.38
18 1 0.05
19 6 0.29
20 6 0.29
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTAATATTTTAAATTT
Found at i:96851414 original size:24 final size:24
Alignment explanation
Indices: 96851369--96851420 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
96851359 GACTTCCGCA
*
96851369 GCTGTTGCAATAGCAGCAGCTGCT
1 GCTGTTGCAATAGCAGCAGCTGCG
* *
96851393 GCTGTTGCAA-AGGCTGCGGCTGCG
1 GCTGTTGCAATA-GCAGCAGCTGCG
96851417 GCTG
1 GCTG
96851421 CCCATGTTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.15, C:0.25, G:0.37, T:0.23
Consensus pattern (24 bp):
GCTGTTGCAATAGCAGCAGCTGCG
Found at i:96866910 original size:17 final size:17
Alignment explanation
Indices: 96866885--96866918 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
96866875 CTTAATATGT
96866885 ATGTATATTTTGATTTA
1 ATGTATATTTTGATTTA
* *
96866902 ATGTTTATTTTTATTTA
1 ATGTATATTTTGATTTA
96866919 TAATCCCTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (17 bp):
ATGTATATTTTGATTTA
Found at i:96867337 original size:20 final size:20
Alignment explanation
Indices: 96867300--96867338 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
96867290 TTTATCAGTT
* * *
96867300 AAATTTTAATTTTTAAATAA
1 AAATTTCAATATTAAAATAA
96867320 AAATTTCAATATTAAAATA
1 AAATTTCAATATTAAAATA
96867339 TCACGTATTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
AAATTTCAATATTAAAATAA
Found at i:96871676 original size:52 final size:52
Alignment explanation
Indices: 96871598--96871701 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
96871588 TGGTAAAAAG
96871598 ATAGTTTTCTATCGGGCTTCTTGTATACGTAGGCTTTTGAATTGCCAAGAAT
1 ATAGTTTTCTATCGGGCTTCTTGTATACGTAGGCTTTTGAATTGCCAAGAAT
96871650 ATAGTTTTCTATCGGGCTTCTTGTATACGTAGGCTTTTGAATTGCCAAGAAT
1 ATAGTTTTCTATCGGGCTTCTTGTATACGTAGGCTTTTGAATTGCCAAGAAT
96871702 GATGTCATAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.40
Consensus pattern (52 bp):
ATAGTTTTCTATCGGGCTTCTTGTATACGTAGGCTTTTGAATTGCCAAGAAT
Found at i:96873480 original size:11 final size:11
Alignment explanation
Indices: 96873464--96873488 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
96873454 TCCGTTAGGC
96873464 GGTAGATTGTA
1 GGTAGATTGTA
96873475 GGTAGATTGTA
1 GGTAGATTGTA
96873486 GGT
1 GGT
96873489 GTTCCAAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36
Consensus pattern (11 bp):
GGTAGATTGTA
Found at i:96877402 original size:16 final size:16
Alignment explanation
Indices: 96877383--96877429 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
96877373 TATTTTCTTA
96877383 TTTTCTTTTTTTATAT
1 TTTTCTTTTTTTATAT
* *
96877399 TTTTCGTTTTTGATAT
1 TTTTCTTTTTTTATAT
96877415 TTGTT-TTTGTTTTAT
1 TT-TTCTTT-TTTTAT
96877430 TTATTTTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.11, C:0.04, G:0.09, T:0.77
Consensus pattern (16 bp):
TTTTCTTTTTTTATAT
Found at i:96878382 original size:17 final size:18
Alignment explanation
Indices: 96878349--96878382 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
96878339 TTTTTTCACA
96878349 TATTATACATATTTAAAC
1 TATTATACATATTTAAAC
*
96878367 TATTATTCAT-TTTAAA
1 TATTATACATATTTAAA
96878383 ATTTACATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTATACATATTTAAAC
Found at i:96879273 original size:29 final size:30
Alignment explanation
Indices: 96879222--96879282 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 30
96879212 TGTGTGTATG
96879222 TTAACTCGTTTTTTTTTATTTTTATACTAT
1 TTAACTCGTTTTTTTTTATTTTTATACTAT
96879252 TTAACTCG-TTTTTTTTATTTTTATACTAT
1 TTAACTCGTTTTTTTTTATTTTTATACTAT
96879281 TT
1 TT
96879283 CCATTCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 23 0.74
30 8 0.26
ACGTcount: A:0.20, C:0.10, G:0.03, T:0.67
Consensus pattern (30 bp):
TTAACTCGTTTTTTTTTATTTTTATACTAT
Found at i:96885004 original size:19 final size:20
Alignment explanation
Indices: 96884977--96885033 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 20
96884967 ACTCATCCAG
*
96884977 TTTACTTAAATAATTATAA-
1 TTTAATTAAATAATTATAAT
* *
96884996 TTTAATTAAA-AAATAAAATT
1 TTTAATTAAATAATTATAA-T
96885016 TTTAATATAAATAATTAT
1 TTTAAT-TAAATAATTAT
96885034 TTTTAATAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 6 0.21
19 9 0.31
20 6 0.21
21 4 0.14
22 4 0.14
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTAATTAAATAATTATAAT
Found at i:96885027 original size:18 final size:19
Alignment explanation
Indices: 96885006--96885041 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
96884996 TTTAATTAAA
96885006 AAATAA-AATTTTTAATAT
1 AAATAATAATTTTTAATAT
*
96885024 AAATAATTATTTTTAATA
1 AAATAATAATTTTTAATA
96885042 GTAGTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AAATAATAATTTTTAATAT
Found at i:96888410 original size:19 final size:20
Alignment explanation
Indices: 96888369--96888410 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
96888359 TATGAATTCT
***
96888369 TTATTATTATTAATTATGTA
1 TTATTATTATTAATTACAAA
96888389 TTATTA-TATTAATTACAAA
1 TTATTATTATTAATTACAAA
96888408 TTA
1 TTA
96888411 GTAAATATCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
TTATTATTATTAATTACAAA
Found at i:96890256 original size:25 final size:26
Alignment explanation
Indices: 96890213--96890261 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
96890203 TAGTAGCACC
96890213 AATTTTTAATAGTAAAAAT-AAATGA
1 AATTTTTAATAGTAAAAATCAAATGA
*
96890238 AATTTTTACTAG-AATAAATCAAAT
1 AATTTTTAATAGTAA-AAATCAAAT
96890262 TACTCTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.10
25 15 0.71
26 4 0.19
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.37
Consensus pattern (26 bp):
AATTTTTAATAGTAAAAATCAAATGA
Found at i:96892405 original size:21 final size:21
Alignment explanation
Indices: 96892355--96892394 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
96892345 TTTTTTATCT
*
96892355 ATAAACCTTAAATCTCAAACC
1 ATAAATCTTAAATCTCAAACC
96892376 ATAAATCTTAAATCTCAAA
1 ATAAATCTTAAATCTCAAA
96892395 TTTTAAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.28
Consensus pattern (21 bp):
ATAAATCTTAAATCTCAAACC
Found at i:96892568 original size:33 final size:33
Alignment explanation
Indices: 96892531--96892617 Score: 90
Period size: 33 Copynumber: 2.6 Consensus size: 33
96892521 TTAGAGTTTG
96892531 AGGTTTGAGGTTCAAGTTCAGA-GCTT-GGAATTT
1 AGGTTTGAGGTTCAAGTT-AGAGGCTTAGG-ATTT
*
96892564 AGGTTTTG-GGTTCAAGTTTGAGGCTTAGGATTT
1 AGG-TTTGAGGTTCAAGTTAGAGGCTTAGGATTT
*
96892597 GGAGTTTGAGGTTCAATGTTA
1 AG-GTTTGAGGTTCAA-GTTA
96892618 AAATTATTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
32 2 0.04
33 26 0.58
34 14 0.31
35 3 0.07
ACGTcount: A:0.22, C:0.07, G:0.32, T:0.39
Consensus pattern (33 bp):
AGGTTTGAGGTTCAAGTTAGAGGCTTAGGATTT
Found at i:96895134 original size:14 final size:14
Alignment explanation
Indices: 96895115--96895143 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
96895105 TTAGATGTGA
96895115 AATAAAAAAAAGTT
1 AATAAAAAAAAGTT
96895129 AATAAAAAAAAGTT
1 AATAAAAAAAAGTT
96895143 A
1 A
96895144 GACGGGTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (14 bp):
AATAAAAAAAAGTT
Found at i:96908735 original size:34 final size:35
Alignment explanation
Indices: 96908697--96908767 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 35
96908687 TGCCAACCCC
* *
96908697 AAAATATATTATTATTGACCGATTATTCTTAA-TT
1 AAAATACAATATTATTGACCGATTATTCTTAACTT
**
96908731 AAAATACAATATTATTGAGGGATTATTCTTAACTT
1 AAAATACAATATTATTGACCGATTATTCTTAACTT
96908766 AA
1 AA
96908768 TTTGTATCGG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.42
Consensus pattern (35 bp):
AAAATACAATATTATTGACCGATTATTCTTAACTT
Found at i:96908854 original size:12 final size:12
Alignment explanation
Indices: 96908837--96908888 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
96908827 AGGAGAGACT
96908837 ATATATAAAAAA
1 ATATATAAAAAA
*
96908849 ATATATAATAAA
1 ATATATAAAAAA
*
96908861 ATTTATAATAAAA
1 ATATATAA-AAAA
*
96908874 TTAATATTAAAAAA
1 AT-ATA-TAAAAAA
96908888 A
1 A
96908889 GCTAATATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
12 18 0.58
13 4 0.13
14 6 0.19
15 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
ATATATAAAAAA
Found at i:96909459 original size:22 final size:23
Alignment explanation
Indices: 96909415--96909461 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
96909405 TACGATCCAA
*
96909415 AAAATAATTAAAAAAGATGAAAT
1 AAAATAATTAAAAAAAATGAAAT
96909438 AAAA-AATTAAAAGAAAAT-AAAT
1 AAAATAATTAAAA-AAAATGAAAT
96909460 AA
1 AA
96909462 GTATAATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (23 bp):
AAAATAATTAAAAAAAATGAAAT
Found at i:96910717 original size:14 final size:15
Alignment explanation
Indices: 96910698--96910726 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
96910688 CCTTTAAAAA
96910698 AATCA-TATCAATTT
1 AATCATTATCAATTT
96910712 AATCATTATCAATTT
1 AATCATTATCAATTT
96910727 TAAAAACGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (15 bp):
AATCATTATCAATTT
Found at i:96915664 original size:13 final size:13
Alignment explanation
Indices: 96915633--96915701 Score: 59
Period size: 13 Copynumber: 5.2 Consensus size: 13
96915623 TTTAAATTAA
*
96915633 ATTTTTCAAAAAC
1 ATTTTTCAAAAAT
* *
96915646 ACTTTTCAAAATT
1 ATTTTTCAAAAAT
*
96915659 ATTTTTTC-ACAAT
1 A-TTTTTCAAAAAT
*
96915672 ATTTTTAAAAAAAT
1 ATTTTT-CAAAAAT
*
96915686 ACTTTTCAAAAAT
1 ATTTTTCAAAAAT
96915699 ATT
1 ATT
96915702 ATCAAACTAA
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
12 5 0.12
13 23 0.55
14 14 0.33
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTTTCAAAAAT
Found at i:96916298 original size:18 final size:19
Alignment explanation
Indices: 96916265--96916302 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
96916255 AATTATGTTA
*
96916265 TTATATAATTCTTGTAAAT
1 TTATATAATACTTGTAAAT
96916284 TTATA-AATACTTGTAAAT
1 TTATATAATACTTGTAAAT
96916302 T
1 T
96916303 ATTTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.50
Consensus pattern (19 bp):
TTATATAATACTTGTAAAT
Found at i:96919281 original size:46 final size:44
Alignment explanation
Indices: 96919221--96919335 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
96919211 ACAGGACAGA
* *
96919221 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
96919267 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
96919311 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
96919336 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:96919316 original size:44 final size:45
Alignment explanation
Indices: 96919221--96919354 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
96919211 ACAGGACAGA
* *
96919221 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
96919267 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
96919311 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
96919355 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:96926688 original size:44 final size:46
Alignment explanation
Indices: 96926594--96926708 Score: 144
Period size: 44 Copynumber: 2.5 Consensus size: 46
96926584 ACAGGACAGA
* *
96926594 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAGAAATATGGCATTGGAG
* * *
96926640 ACAGGATTGAGCCATGTAAGTCCAT-TT-TATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAGAAATATGGCATTGGAG
* **
96926684 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
96926709 GTCAAAGACA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
44 35 0.58
45 2 0.03
46 23 0.38
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (46 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAGAAATATGGCATTGGAG
Found at i:96928475 original size:13 final size:14
Alignment explanation
Indices: 96928454--96928482 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
96928444 TGAAAAATGG
96928454 ATTAGAAAATATTT
1 ATTAGAAAATATTT
96928468 ATTA-AAAATATTT
1 ATTAGAAAATATTT
96928481 AT
1 AT
96928483 GAAGTTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:96928898 original size:22 final size:21
Alignment explanation
Indices: 96928863--96928904 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
96928853 ATATTTATTA
96928863 ATTAAATAATTAAATAATGAG
1 ATTAAATAATTAAATAATGAG
96928884 ATTAAATAAATTAAATAATGA
1 ATTAAAT-AATTAAATAATGA
96928905 CAATTGTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (21 bp):
ATTAAATAATTAAATAATGAG
Found at i:96929031 original size:31 final size:32
Alignment explanation
Indices: 96928982--96929045 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 32
96928972 ATATTAAATA
*
96928982 AGATATTTATTAATTAAATA-ATTATATTATG
1 AGATATTTATTAATTAAATATATTAAATTATG
*
96929013 AGATTTTTATGTAA-TAAATATATTAAATTATG
1 AGATATTTAT-TAATTAAATATATTAAATTATG
96929045 A
1 A
96929046 CAATTGTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (32 bp):
AGATATTTATTAATTAAATATATTAAATTATG
Found at i:96929995 original size:15 final size:15
Alignment explanation
Indices: 96929972--96930015 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
96929962 TATCAAATTT
96929972 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
96929987 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
96930002 ATATTGATTGAAAT
1 ATATTGATTGAAAT
96930016 ATAATATATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:96930408 original size:23 final size:23
Alignment explanation
Indices: 96930381--96930438 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
96930371 TAATATTCCA
96930381 AGTGTGTTTGGGTTGGAAATTCT
1 AGTGTGTTTGGGTTGGAAATTCT
* * *
96930404 GGTGTGTTTTGGTTGGATATTCT
1 AGTGTGTTTGGGTTGGAAATTCT
*
96930427 AATGTGTTTGGG
1 AGTGTGTTTGGG
96930439 AGGAATCTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.14, C:0.03, G:0.36, T:0.47
Consensus pattern (23 bp):
AGTGTGTTTGGGTTGGAAATTCT
Found at i:96930564 original size:18 final size:19
Alignment explanation
Indices: 96930543--96930583 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
96930533 AATGAAATGA
96930543 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
96930561 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
96930580 GAAA
1 GAAA
96930584 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:96933116 original size:25 final size:24
Alignment explanation
Indices: 96933088--96933134 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
96933078 AATAAAAAAC
* *
96933088 TTTAAAATATAACAAATCAAATACA
1 TTTAAAACATAA-AAAACAAATACA
96933113 TTTAAAACATAAAAAACAAATA
1 TTTAAAACATAAAAAACAAATA
96933135 TTAAAACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.26
Consensus pattern (24 bp):
TTTAAAACATAAAAAACAAATACA
Found at i:96935926 original size:51 final size:51
Alignment explanation
Indices: 96935850--96936062 Score: 300
Period size: 51 Copynumber: 4.0 Consensus size: 51
96935840 GATCAATGAC
*
96935850 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAGGTGAT
1 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGAT
* *
96935901 AAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACAAGTGAT
1 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGAT
*
96935952 AAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGAT
1 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGAC-------AAGTGAT
* * *
96936010 AAGTGATAAGTGGTAGTTTTAACTACACTTATCTGATCAGTGACAAGTGAT
1 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGAT
96936061 AA
1 AA
96936063 ATGTGATCAG
Statistics
Matches: 145, Mismatches: 10, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
51 98 0.68
58 47 0.32
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (51 bp):
AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGAT
Found at i:96935962 original size:58 final size:58
Alignment explanation
Indices: 96935897--96936065 Score: 253
Period size: 58 Copynumber: 3.0 Consensus size: 58
96935887 CAATGACAGG
96935897 TGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACAAGTG----A
1 TGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAA
* * *
96935951 T-A-AA-TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAG
1 TGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAA
*
96936006 TGATAAGTGATAAGTGGTAGTTTTAACTACACTTATCTGATCAGTGACAAGTGATAAA
1 TGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAA
96936064 TG
1 TG
96936066 TGATCAGTGT
Statistics
Matches: 101, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
51 44 0.44
52 2 0.02
53 1 0.01
54 1 0.01
55 1 0.01
56 1 0.01
57 2 0.02
58 49 0.49
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (58 bp):
TGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAA
Found at i:96935983 original size:102 final size:105
Alignment explanation
Indices: 96935853--96936065 Score: 360
Period size: 109 Copynumber: 2.0 Consensus size: 105
96935843 CAATGACAAG
96935853 TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGAC-A-G-GTGATAAGTGATAAGTGGT
1 TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGGAGTGATAAGTGATAAGTGGT
*
96935915 AGTTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAA
66 AGTTTTAACTACACTTATCTGATCAGTGACAAGTGATAAA
96935955 TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATAAGTGATAAG
1 TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAG-G---AGTGATAAGTGATAAG
96936020 TGGTAGTTTTAACTACACTTATCTGATCAGTGACAAGTGATAAA
62 TGGTAGTTTTAACTACACTTATCTGATCAGTGACAAGTGATAAA
96936064 TG
1 TG
96936066 TGATCAGTGT
Statistics
Matches: 103, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
102 41 0.40
103 1 0.01
105 1 0.01
109 60 0.58
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.32
Consensus pattern (105 bp):
TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGGAGTGATAAGTGATAAGTGGT
AGTTTTAACTACACTTATCTGATCAGTGACAAGTGATAAA
Found at i:96936008 original size:7 final size:7
Alignment explanation
Indices: 96935996--96936021 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
96935986 GATCAATGAC
96935996 AAGTGAT
1 AAGTGAT
96936003 AAGTGAT
1 AAGTGAT
96936010 AAGTGAT
1 AAGTGAT
96936017 AAGTG
1 AAGTG
96936022 GTAGTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.31, T:0.27
Consensus pattern (7 bp):
AAGTGAT
Found at i:96939866 original size:20 final size:21
Alignment explanation
Indices: 96939836--96939881 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
96939826 TCAATAACAA
*
96939836 TTTTTCATTTTCTCTGTTCAC
1 TTTTTCATTTTCACTGTTCAC
* *
96939857 TTTTTC-TTTTCACTTTTGAC
1 TTTTTCATTTTCACTGTTCAC
96939877 TTTTT
1 TTTTT
96939882 ATATATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.09, C:0.20, G:0.04, T:0.67
Consensus pattern (21 bp):
TTTTTCATTTTCACTGTTCAC
Found at i:96939868 original size:13 final size:14
Alignment explanation
Indices: 96939837--96939873 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
96939827 CAATAACAAT
96939837 TTTTCA-TTTTCTC
1 TTTTCACTTTTCTC
*
96939850 TGTTCACTTTT-TC
1 TTTTCACTTTTCTC
96939863 TTTTCACTTTT
1 TTTTCACTTTT
96939874 GACTTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.08, C:0.22, G:0.03, T:0.68
Consensus pattern (14 bp):
TTTTCACTTTTCTC
Found at i:96944292 original size:221 final size:221
Alignment explanation
Indices: 96943909--96944352 Score: 843
Period size: 221 Copynumber: 2.0 Consensus size: 221
96943899 TGGTCTACAA
* *
96943909 AATTCAAGAAAACGGGTTCGAGAGTTAGTTACGTACGAGGAAGGATTAACACCCTCGTAACGCCC
1 AATTCAAGAAAACGGGTTCGAGAGTCAGTTACATACGAGGAAGGATTAACACCCTCGTAACGCCC
*
96943974 AAAATTGGTACCTAATTGATTAATTAATGTCTTAATGTTGGAAGTTGGAAAGCCGTAAAGAATTT
66 AAAATTGGTACCTAATTGATTAATTAATGTCTTAATGTTGGAAGTTGGAAAGCCATAAAGAATTT
*
96944039 AAAACTATGATCCTCCTTTTTTATTAATGTTAATTTTACAAAAAAAATGTTTGAATAAATCAAAG
131 AAAAATATGATCCTCCTTTTTTATTAATGTTAATTTTACAAAAAAAATGTTTGAATAAATCAAAG
96944104 CGGATGCTAAAGACCTTTTTGTCCCG
196 CGGATGCTAAAGACCTTTTTGTCCCG
*
96944130 AATTCAAGAAAACGGGTTCGGGAGTCAGTTACATACGAGGAAGGATTAACACCCTCGTAACGCCC
1 AATTCAAGAAAACGGGTTCGAGAGTCAGTTACATACGAGGAAGGATTAACACCCTCGTAACGCCC
96944195 AAAATTGGTACCTAATTGATTAATTAATGTCTTAATGTTGGAAGTTGGAAAGCCATAAAGAATTT
66 AAAATTGGTACCTAATTGATTAATTAATGTCTTAATGTTGGAAGTTGGAAAGCCATAAAGAATTT
96944260 AAAAATATGATCCTCCTTTTTTATTAATGTTAATTTTACAAAAAAAATGTTTGAATAAATCAAAG
131 AAAAATATGATCCTCCTTTTTTATTAATGTTAATTTTACAAAAAAAATGTTTGAATAAATCAAAG
96944325 CGGATGCTAAAGACCTTTTTGTCCCG
196 CGGATGCTAAAGACCTTTTTGTCCCG
96944351 AA
1 AA
96944353 GTAATAAAAT
Statistics
Matches: 218, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
221 218 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (221 bp):
AATTCAAGAAAACGGGTTCGAGAGTCAGTTACATACGAGGAAGGATTAACACCCTCGTAACGCCC
AAAATTGGTACCTAATTGATTAATTAATGTCTTAATGTTGGAAGTTGGAAAGCCATAAAGAATTT
AAAAATATGATCCTCCTTTTTTATTAATGTTAATTTTACAAAAAAAATGTTTGAATAAATCAAAG
CGGATGCTAAAGACCTTTTTGTCCCG
Found at i:96944963 original size:25 final size:25
Alignment explanation
Indices: 96944860--96944970 Score: 84
Period size: 25 Copynumber: 4.4 Consensus size: 25
96944850 GTGAAACGAC
*
96944860 ATAATATATAAAGCAGTTTGAAATAA
1 ATAATATATAAAGCAGTTT-AAAAAA
* * *
96944886 ATAGTATA-AAA-CAATTTAAGATAA
1 ATAATATATAAAGCAGTTTAA-AAAA
* * * *
96944910 ATAGTATGTAAAACA-ATTAAAAAGA
1 ATAATATATAAAGCAGTTTAAAAA-A
*
96944935 ATAATATACAAAGCAGTTTAAAAAA
1 ATAATATATAAAGCAGTTTAAAAAA
*
96944960 ATAATACATAA
1 ATAATATATAA
96944971 GACAACTTAA
Statistics
Matches: 68, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
23 2 0.03
24 18 0.26
25 32 0.47
26 16 0.24
ACGTcount: A:0.59, C:0.05, G:0.09, T:0.27
Consensus pattern (25 bp):
ATAATATATAAAGCAGTTTAAAAAA
Found at i:96944998 original size:75 final size:75
Alignment explanation
Indices: 96944860--96945016 Score: 169
Period size: 75 Copynumber: 2.1 Consensus size: 75
96944850 GTGAAACGAC
* * * * * *
96944860 ATAATATATAAAGCAGTTTGAAATAAATAGTATAAAACAATTTAAGATAAATAGTATGTAAAACA
1 ATAATATACAAAGCAGTTTGAAAAAAATAATATAAAACAACTTAAAATAAATAGTATGAAAAACA
96944925 ATTAAAA-AGA
66 ATTAAAATA-A
*
96944935 ATAATATACAAAGCAGTTT-AAAAAAATAATACATAAGACAACTTAAAAT-AATA-TATGAAAAA
1 ATAATATACAAAGCAGTTTGAAAAAAATAAT--ATAAAACAACTTAAAATAAATAGTATG-AAAA
**
96944997 ACGTTTAAAATAA
63 ACAATTAAAATAA
96945010 ATAATAT
1 ATAATAT
96945017 GTAGAAAGAA
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
74 13 0.19
75 41 0.59
76 15 0.22
ACGTcount: A:0.59, C:0.06, G:0.08, T:0.27
Consensus pattern (75 bp):
ATAATATACAAAGCAGTTTGAAAAAAATAATATAAAACAACTTAAAATAAATAGTATGAAAAACA
ATTAAAATAA
Found at i:96945038 original size:28 final size:28
Alignment explanation
Indices: 96944980--96945041 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
96944970 AGACAACTTA
*
96944980 AAATAATATATGAAAAAACGTTTAAAAT
1 AAATAATATATGAAAAAACGTTGAAAAT
* * *
96945008 AAATAATATGTAGAAAGAA-GTTGAAACT
1 AAATAATATAT-GAAAAAACGTTGAAAAT
96945036 AAATAA
1 AAATAA
96945042 AACAAAAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 23 0.79
29 6 0.21
ACGTcount: A:0.60, C:0.03, G:0.11, T:0.26
Consensus pattern (28 bp):
AAATAATATATGAAAAAACGTTGAAAAT
Found at i:96946782 original size:30 final size:31
Alignment explanation
Indices: 96946741--96946807 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
96946731 AACTTAAATC
*
96946741 TAATAATTTAAATAAAAACTTTT-AAATAG-T
1 TAATAACTTAAATAAAAA-TTTTCAAATAGTT
*
96946771 TAATAACTTAAATGAAAATTTTCAAATAGTT
1 TAATAACTTAAATAAAAATTTTCAAATAGTT
96946802 TAATAA
1 TAATAA
96946808 TTATTTTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 4 0.12
30 22 0.67
31 7 0.21
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (31 bp):
TAATAACTTAAATAAAAATTTTCAAATAGTT
Found at i:96948838 original size:23 final size:23
Alignment explanation
Indices: 96948812--96948856 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
96948802 ATCTACGGTT
96948812 TTTGTTT-TTATGTTTTGTTGTGA
1 TTTGTTTCTTAT-TTTTGTTGTGA
*
96948835 TTTGTTTCTTCTTTTTGTTGTG
1 TTTGTTTCTTATTTTTGTTGTG
96948857 TGTGTGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.04, C:0.04, G:0.20, T:0.71
Consensus pattern (23 bp):
TTTGTTTCTTATTTTTGTTGTGA
Found at i:96968312 original size:15 final size:15
Alignment explanation
Indices: 96968263--96968313 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
96968253 AATAGTCAGA
*
96968263 TTATATTTTAGTAAT
1 TTATATTTTAGTTAT
* * **
96968278 TTATGTTTGAAATA-
1 TTATATTTTAGTTAT
96968292 TTATATTTTAGTTAT
1 TTATATTTTAGTTAT
96968307 TTATATT
1 TTATATT
96968314 ATTATTTTGT
Statistics
Matches: 26, Mismatches: 9, Indels: 2
0.70 0.24 0.05
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (15 bp):
TTATATTTTAGTTAT
Found at i:96969975 original size:49 final size:49
Alignment explanation
Indices: 96969922--96970020 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
96969912 TTTTATAGGG
*
96969922 GTTGGTGTGGCGAATGCTGGGGTTGTCATCCAAGATTGGTGCGGCGAGT
1 GTTGGTGTGGCGAATGCTGGGGTTGTCATCCAAGATAGGTGCGGCGAGT
*
96969971 GTTGGTGTGGCGATTGCTGGGGTTGTCATCCAAGATAGGTGCGGCGAGT
1 GTTGGTGTGGCGAATGCTGGGGTTGTCATCCAAGATAGGTGCGGCGAGT
96970020 G
1 G
96970021 ATGGGGTAGC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.14, C:0.14, G:0.43, T:0.28
Consensus pattern (49 bp):
GTTGGTGTGGCGAATGCTGGGGTTGTCATCCAAGATAGGTGCGGCGAGT
Found at i:96977955 original size:11 final size:11
Alignment explanation
Indices: 96977939--96977963 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
96977929 ATTTAAAAAT
96977939 ATAAAGTATTA
1 ATAAAGTATTA
96977950 ATAAAGTATTA
1 ATAAAGTATTA
96977961 ATA
1 ATA
96977964 TATTTATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (11 bp):
ATAAAGTATTA
Found at i:96978754 original size:20 final size:18
Alignment explanation
Indices: 96978716--96978754 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
96978706 TTTCAAGAAA
96978716 TATAAATTTTAGAATTTT
1 TATAAATTTTAGAATTTT
*
96978734 TATAAATATTTTGAATATTT
1 TATAAAT-TTTAGAAT-TTT
96978754 T
1 T
96978755 TTATTTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 7 0.39
20 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (18 bp):
TATAAATTTTAGAATTTT
Found at i:96984983 original size:21 final size:21
Alignment explanation
Indices: 96984957--96984997 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
96984947 AGACGAGCAA
* *
96984957 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
96984978 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
96984998 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:96989653 original size:18 final size:18
Alignment explanation
Indices: 96989626--96989668 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
96989616 TAAAAATTAT
*
96989626 TAAAAA-AGAATAAAAAA
1 TAAAAATAGAAGAAAAAA
*
96989643 TAAAAATAGAAGACAAAA
1 TAAAAATAGAAGAAAAAA
*
96989661 TTAAAATA
1 TAAAAATA
96989669 TAATTATCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.74, C:0.02, G:0.07, T:0.16
Consensus pattern (18 bp):
TAAAAATAGAAGAAAAAA
Found at i:96994082 original size:2 final size:2
Alignment explanation
Indices: 96994075--96994115 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
96994065 AAGGTTACCG
* * *
96994075 TC TC TC TC TT TC TC TC TC TC TG TC TC TC TC TC TC TT TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
96994116 TTGTAATTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.41, G:0.02, T:0.56
Consensus pattern (2 bp):
TC
Found at i:96994092 original size:12 final size:12
Alignment explanation
Indices: 96994075--96994115 Score: 64
Period size: 12 Copynumber: 3.2 Consensus size: 12
96994065 AAGGTTACCG
96994075 TCTCTCTCTTTC
1 TCTCTCTCTTTC
96994087 TCTCTCTCTGTCTC
1 TCTCTCTCT-T-TC
96994101 TCTCTCTCTTTC
1 TCTCTCTCTTTC
96994113 TCT
1 TCT
96994116 TTGTAATTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 14 0.52
13 2 0.07
14 11 0.41
ACGTcount: A:0.00, C:0.41, G:0.02, T:0.56
Consensus pattern (12 bp):
TCTCTCTCTTTC
Found at i:96998235 original size:15 final size:15
Alignment explanation
Indices: 96998215--96998247 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
96998205 ATCTTACTAC
96998215 CCTTAATATTATATT
1 CCTTAATATTATATT
96998230 CCTTAATATTATATT
1 CCTTAATATTATATT
96998245 CCT
1 CCT
96998248 CTGGCAGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.18, G:0.00, T:0.52
Consensus pattern (15 bp):
CCTTAATATTATATT
Found at i:97002520 original size:18 final size:18
Alignment explanation
Indices: 97002497--97002540 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
97002487 AATTGATCAG
*
97002497 TTATTCAGTAACAGTGAA
1 TTATTCAGTAACAGTCAA
* *
97002515 TTATTCGGTAACAGTCAT
1 TTATTCAGTAACAGTCAA
97002533 TTATTCAG
1 TTATTCAG
97002541 AAATAATCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:97002781 original size:53 final size:53
Alignment explanation
Indices: 97002666--97002786 Score: 172
Period size: 53 Copynumber: 2.3 Consensus size: 53
97002656 CCGGAACAGT
*
97002666 AACAGTAACAGTAGCAGTACGGTACACAGAGCACCTCATCGGAACAAATCTGA
1 AACAGTAACAGTAACAGTACGGTACACAGAGCACCTCATCGGAACAAATCTGA
* * * *
97002719 AATAGTAACAGTAACATTACGGTACACAGAGTACTTCATCGGAACAAATCCT-A
1 AACAGTAACAGTAACAGTACGGTACACAGAGCACCTCATCGGAACAAAT-CTGA
*
97002772 AACAATAACAGTAAC
1 AACAGTAACAGTAAC
97002787 GGTAATAGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 58 0.97
54 2 0.03
ACGTcount: A:0.43, C:0.22, G:0.17, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACGGTACACAGAGCACCTCATCGGAACAAATCTGA
Found at i:97010446 original size:21 final size:21
Alignment explanation
Indices: 97010407--97010458 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 21
97010397 ATCAAAAAAT
97010407 TAAATAA-ATTTAAATTATAATA
1 TAAATAATATTT-AATTAT-ATA
97010429 TAAATAATATTT-ATTATATA
1 TAAATAATATTTAATTATATA
97010449 -AAA-AATATTT
1 TAAATAATATTT
97010459 TGAAAATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 7 0.24
19 3 0.10
20 3 0.10
21 5 0.17
22 7 0.24
23 4 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAATAATATTTAATTATATA
Found at i:97012906 original size:30 final size:30
Alignment explanation
Indices: 97012872--97012962 Score: 146
Period size: 30 Copynumber: 3.0 Consensus size: 30
97012862 TAAATCTTAG
*
97012872 CCTTTTTCACCACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
*
97012902 CCTTTTCCCCCACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* *
97012932 CATTTTCCACCACCAAATCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
97012962 C
1 C
97012963 TTGCTCCGTT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.27, C:0.48, G:0.03, T:0.21
Consensus pattern (30 bp):
CCTTTTCCACCACCAACTCCACTAGCCACA
Found at i:97012981 original size:60 final size:59
Alignment explanation
Indices: 97012873--97013006 Score: 153
Period size: 60 Copynumber: 2.2 Consensus size: 59
97012863 AAATCTTAGC
* * * *
97012873 CTTTTTCACCACCAACTCCACTAGCCACACCTTTTCCCCCACCAACTCCACTAGCCACA
1 CTTTTCCACCACCAAATCCACTAGCCACACCTTCTCCCCCACCAACTCCACTAACCACA
*** *
97012932 CATTTTCCACCACCAAATCCACTAGCCACA-CTTGCTCCGTTACCTACTCCACTAACCACA
1 C-TTTTCCACCACCAAATCCACTAGCCACACCTT-CTCCCCCACCAACTCCACTAACCACA
*
97012992 CTTGCTCCACCACCA
1 CTT-TTCCACCACCA
97013007 CTTGTACCTA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
59 6 0.10
60 57 0.90
ACGTcount: A:0.26, C:0.47, G:0.04, T:0.22
Consensus pattern (59 bp):
CTTTTCCACCACCAAATCCACTAGCCACACCTTCTCCCCCACCAACTCCACTAACCACA
Found at i:97013541 original size:23 final size:23
Alignment explanation
Indices: 97013504--97013635 Score: 67
Period size: 25 Copynumber: 5.5 Consensus size: 23
97013494 CCTTTTTTGT
97013504 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
97013527 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
97013549 TATTA-AGTATATT-TTAA-ATTCTA
1 TATTATA-TATATTCTTAATA-T-TA
* * *
97013572 TATTACGTATATATATATTTTATACTA
1 TATTA--TATATAT-T-CTTAATATTA
* *
97013599 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
97013624 TATTATTTATAT
1 TATTATATATAT
97013636 ATATATTTTT
Statistics
Matches: 83, Mismatches: 13, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
21 4 0.05
22 15 0.18
23 18 0.22
24 4 0.05
25 30 0.36
26 2 0.02
27 6 0.07
28 3 0.04
29 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:97013599 original size:27 final size:27
Alignment explanation
Indices: 97013569--97013686 Score: 82
Period size: 27 Copynumber: 4.5 Consensus size: 27
97013559 ATTTTAAATT
97013569 CTATATTACGTATATATATATTTTATA
1 CTATATTACGTATATATATATTTTATA
* * * *
97013596 CTATTTTA--TGTATATATCTTTAATA
1 CTATATTACGTATATATATATTTTATA
* ** *
97013621 TTATATTATTTATATATATATTTTTTA
1 CTATATTACGTATATATATATTTTATA
* * * *
97013648 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTA-CGTATATATATATTTTATA
*
97013674 CTATATTATGTAT
1 CTATATTACGTAT
97013687 GTATTTTTAA
Statistics
Matches: 68, Mismatches: 19, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
25 20 0.29
26 10 0.15
27 38 0.56
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (27 bp):
CTATATTACGTATATATATATTTTATA
Found at i:97013609 original size:25 final size:25
Alignment explanation
Indices: 97013518--97013723 Score: 86
Period size: 25 Copynumber: 8.2 Consensus size: 25
97013508 ATTATATTTC
* * *
97013518 TTAATATTATATTATATATAT-TCT
1 TTAATACTATATTATGTATATATAT
* *
97013542 TT--TAATATATTAAGTATAT-T-T
1 TTAATACTATATTATGTATATATAT
* * *
97013563 TAAATTCTATATTACGTATATATATAT
1 TTAATACTATATTA--TGTATATATAT
* * *
97013590 TTTATACTATTTTATGTATATATCT
1 TTAATACTATATTATGTATATATAT
* *
97013615 TTAATATTATATTATTTATATATATATTTT
1 TTAATACTATATTA--TGTATATATA---T
** * *
97013645 TTACATGTTATCTTATGTATATAT-C
1 TTA-ATACTATATTATGTATATATAT
* *
97013670 TT-A-ACTATATTATGTATGTATTT
1 TTAATACTATATTATGTATATATAT
* * *
97013693 TTAACACTATATTATGTACATATTT
1 TTAATACTATATTATGTATATATAT
97013718 TTAATA
1 TTAATA
97013724 TTATCACGTA
Statistics
Matches: 136, Mismatches: 31, Indels: 29
0.69 0.16 0.15
Matches are distributed among these distances:
21 2 0.01
22 29 0.21
23 11 0.08
24 3 0.02
25 50 0.37
26 1 0.01
27 19 0.14
29 8 0.06
30 4 0.03
31 9 0.07
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (25 bp):
TTAATACTATATTATGTATATATAT
Found at i:97013901 original size:16 final size:15
Alignment explanation
Indices: 97013877--97013924 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
97013867 TAATTATTAT
*
97013877 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
97013893 TATTTTAATATTTTA
1 TATTTTAATATTTTA
97013908 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
97013924 T
1 T
97013925 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:97013912 original size:7 final size:8
Alignment explanation
Indices: 97013877--97013928 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
97013867 TAATTATTAT
*
97013877 TATTCTAA
1 TATTTTAA
*
97013885 TATTTTGA
1 TATTTTAA
97013893 TATTTTAA
1 TATTTTAA
97013901 TATTTT-A
1 TATTTTAA
97013908 TATTTTATA
1 TATTTTA-A
*
97013917 TATTTTAT
1 TATTTTAA
97013925 TATT
1 TATT
97013929 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:97019056 original size:84 final size:83
Alignment explanation
Indices: 97018834--97019056 Score: 229
Period size: 84 Copynumber: 2.7 Consensus size: 83
97018824 CAATCCACGT
* *
97018834 ATTTAAGGGTTTGAAAGCTATATGAATAAT-AAAAATGGTATAATAAATAATAAA-AGATCAAAT
1 ATTTAAGGGTTTGAAAGATATATGAATAATAAAAAATGGTATAAAAAATAATAAAGAGATCAAAT
* * * *
97018897 ATAAATATTAATCTTTCG
66 AGAAACACTAACCTTTCG
* * * * *
97018915 ACTTAAAGGTTTGAAAGACATATGAATAATAACAAAAATTGTATAAATAATAATAAAGA-ATCAA
1 ATTTAAGGGTTTGAAAGATATATGAATAAT-A-AAAAATGGTATAAAAAATAATAAAGAGATCAA
*
97018979 ATAGAAACACTAGCCTTTCTG
64 ATAGAAACACTAACCTTTC-G
* * * *
97019000 -TTTAAGGGTTTAAAAGGTACATGAATAATAGAAACAATGGTGTAAAAAATAATAAAG
1 ATTTAAGGGTTTGAAAGATATATGAATAATA-AAA-AATGGTATAAAAAATAATAAAG
97019057 GACTAAATAG
Statistics
Matches: 114, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
81 26 0.23
83 4 0.04
84 82 0.72
85 2 0.02
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (83 bp):
ATTTAAGGGTTTGAAAGATATATGAATAATAAAAAATGGTATAAAAAATAATAAAGAGATCAAAT
AGAAACACTAACCTTTCG
Found at i:97021328 original size:18 final size:20
Alignment explanation
Indices: 97021288--97021333 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
97021278 ATGTTATATA
*
97021288 TTATAAAAATAATATACTTAT
1 TTATAAAAATAATATAC-AAT
97021309 TTATAAAAATAA-ATA-AAT
1 TTATAAAAATAATATACAAT
*
97021327 TTCTAAA
1 TTATAAA
97021334 GCTATGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 8 0.35
20 3 0.13
21 12 0.52
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
TTATAAAAATAATATACAAT
Found at i:97024639 original size:3 final size:3
Alignment explanation
Indices: 97024625--97024662 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
97024615 TTTGACGCCT
*
97024625 TTA TTC TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
97024663 CCAGGAAGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:97032221 original size:18 final size:17
Alignment explanation
Indices: 97032176--97032222 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
97032166 CAACCTGTAT
97032176 TTTTA-AGTATGTAATA
1 TTTTATAGTATGTAATA
* * *
97032192 TTTTATATTATGTTATT
1 TTTTATAGTATGTAATA
97032209 TTTGTATAGTATGT
1 TTT-TATAGTATGT
97032223 CATCTATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 5 0.20
17 11 0.44
18 9 0.36
ACGTcount: A:0.28, C:0.00, G:0.13, T:0.60
Consensus pattern (17 bp):
TTTTATAGTATGTAATA
Found at i:97035452 original size:22 final size:22
Alignment explanation
Indices: 97035426--97035480 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
97035416 AAAGTGAATA
* *
97035426 AAACAAACAGAGTAAAGAAAAG
1 AAACAAAAAGAATAAAGAAAAG
*
97035448 AAACAAAAAGAATAGAGAAAAG
1 AAACAAAAAGAATAAAGAAAAG
*
97035470 AGAACAGAAAG
1 A-AACAAAAAG
97035481 CATTCGAGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.69, C:0.07, G:0.20, T:0.04
Consensus pattern (22 bp):
AAACAAAAAGAATAAAGAAAAG
Found at i:97037061 original size:21 final size:23
Alignment explanation
Indices: 97037006--97037067 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 23
97036996 TACTGATCAA
*
97037006 GCACTTTATATGTCGTATTTCAG
1 GCACTTTATGTGTCGTATTTCAG
* **
97037029 GCACCTCGTGTGTCGT-TTT-AG
1 GCACTTTATGTGTCGTATTTCAG
97037050 GCACTTTATGTGTCGTAT
1 GCACTTTATGTGTCGTAT
97037068 ACTGATCAGG
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 15 0.48
22 4 0.13
23 12 0.39
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (23 bp):
GCACTTTATGTGTCGTATTTCAG
Found at i:97042999 original size:11 final size:11
Alignment explanation
Indices: 97042963--97043018 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
97042953 CATGGTATGT
97042963 ATGATATGCAC
1 ATGATATGCAC
* *
97042974 ATGACATG--T
1 ATGATATGCAC
97042983 ATGATATGCAC
1 ATGATATGCAC
*
97042994 ATGATATG--T
1 ATGATATGCAC
97043003 ATGATATGCAC
1 ATGATATGCAC
97043014 ATGAT
1 ATGAT
97043019 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:97043018 original size:20 final size:20
Alignment explanation
Indices: 97042952--97043018 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
97042942 ATTTTAATAA
*
97042952 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
97042972 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
97042992 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
97043012 ACATGAT
1 ACATGAT
97043019 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:97043095 original size:24 final size:24
Alignment explanation
Indices: 97043068--97043164 Score: 142
Period size: 25 Copynumber: 4.0 Consensus size: 24
97043058 GAGGAAGTGC
97043068 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
97043092 AAAAAGGGCTTATGCCCCAGTTATC
1 -AAAAGGGCTTATGCCCCAGTTATT
97043117 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
97043141 AAAAGAGGC-TAAGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
97043165 ATGATAAAGC
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
24 33 0.49
25 34 0.51
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:97043161 original size:49 final size:49
Alignment explanation
Indices: 97043067--97043164 Score: 155
Period size: 49 Copynumber: 2.0 Consensus size: 49
97043057 GGAGGAAGTG
*
97043067 CAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTAAGCCCCAGTTAT
97043116 CAAAAGGGCTTATGCCCCAGTTATT-AAAAGAGGC-TAAGCCTCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAAG-GGCTTAAGCC-CCAGTTAT
97043165 ATGATAAAGC
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
48 10 0.22
49 36 0.78
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (49 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTAAGCCCCAGTTAT
Found at i:97044476 original size:182 final size:182
Alignment explanation
Indices: 97044169--97044532 Score: 665
Period size: 182 Copynumber: 2.0 Consensus size: 182
97044159 GCATCCCAAG
97044169 ATCTTTTCCAACATCAAGTGCCTTTCTCAAAACCTAGAATCAAAAGGAAGGTTTCATTATTGAAC
1 ATCTTTTCCAACATCAAGTGCCTTTCTCAAAACCTAGAATCAAAAGGAAGGTTTCATTATTGAAC
*
97044234 ACATGATATATACTACCCTGAAAAGTAAAACATGGCTATAAATCCAGTAACTCAACAAAGTTCTA
66 ACATGATATATACTACCCTGAAAAGTAAAACATGGCCATAAATCCAGTAACTCAACAAAGTTCTA
97044299 ACCGTGTGGTTGCGAGTGTACCAATCACCAATCAAAATTGTAATGTCTCCAT
131 ACCGTGTGGTTGCGAGTGTACCAATCACCAATCAAAATTGTAATGTCTCCAT
* *
97044351 ATCTTTTCCAGCATCAAGTGCCTTTCTCAAAGCCTAGAATCAAAAGGAAGGTTTCATTATTGAAC
1 ATCTTTTCCAACATCAAGTGCCTTTCTCAAAACCTAGAATCAAAAGGAAGGTTTCATTATTGAAC
* *
97044416 ACATTATATATACTACCCTGAAAAGTAAAACATGGCCATAAATCCTGTAACTCAACAAAGTTCTA
66 ACATGATATATACTACCCTGAAAAGTAAAACATGGCCATAAATCCAGTAACTCAACAAAGTTCTA
* *
97044481 ACTGTGTGGTTGCGAGTGTACTAATCACCAATCAAAATTGTAATGTCTCCAT
131 ACCGTGTGGTTGCGAGTGTACCAATCACCAATCAAAATTGTAATGTCTCCAT
97044533 TAGGGAAGCC
Statistics
Matches: 175, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
182 175 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (182 bp):
ATCTTTTCCAACATCAAGTGCCTTTCTCAAAACCTAGAATCAAAAGGAAGGTTTCATTATTGAAC
ACATGATATATACTACCCTGAAAAGTAAAACATGGCCATAAATCCAGTAACTCAACAAAGTTCTA
ACCGTGTGGTTGCGAGTGTACCAATCACCAATCAAAATTGTAATGTCTCCAT
Found at i:97044731 original size:22 final size:22
Alignment explanation
Indices: 97044703--97044746 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
97044693 AGGACAATTA
97044703 GTGCCTGGTAACCCATCTTGCC
1 GTGCCTGGTAACCCATCTTGCC
97044725 GTGCCTGGTAACCCATCTTGCC
1 GTGCCTGGTAACCCATCTTGCC
97044747 ATGAACTACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.36, G:0.23, T:0.27
Consensus pattern (22 bp):
GTGCCTGGTAACCCATCTTGCC
Found at i:97049433 original size:21 final size:21
Alignment explanation
Indices: 97049407--97049464 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
97049397 TGGATCAGCC
97049407 CTTACGAGCTTCTGTTCAACT
1 CTTACGAGCTTCTGTTCAACT
*
97049428 CTTACGAGCTTCTGTTCAGCT
1 CTTACGAGCTTCTGTTCAACT
* **
97049449 ATTTTGAGCTTCTGTT
1 CTTACGAGCTTCTGTT
97049465 GGCGTGTTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.16, C:0.24, G:0.17, T:0.43
Consensus pattern (21 bp):
CTTACGAGCTTCTGTTCAACT
Found at i:97051001 original size:83 final size:83
Alignment explanation
Indices: 97050898--97051059 Score: 288
Period size: 83 Copynumber: 2.0 Consensus size: 83
97050888 CTGCAAATCA
* *
97050898 AGAACCTGAAGCAAGTCGAGGAAAAGAAAAAGTAGCTGATTAGTCCCTGAACTTTCACAAATTTT
1 AGAACCCGAAGCAAGTCGAGGAAAAGAAAAAGTAGCTAATTAGTCCCTGAACTTTCACAAATTTT
*
97050963 GCAAATTGACCCAGATCG
66 GCAAATCGACCCAGATCG
*
97050981 AGAACCCGAAGCAAGTCGAGGAAAATAAAAAGTAGCTAATTAGTCCCTGAACTTTCACAAATTTT
1 AGAACCCGAAGCAAGTCGAGGAAAAGAAAAAGTAGCTAATTAGTCCCTGAACTTTCACAAATTTT
97051046 GCAAATCGACCCAG
66 GCAAATCGACCCAG
97051060 GTAAGTTCAT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 75 1.00
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (83 bp):
AGAACCCGAAGCAAGTCGAGGAAAAGAAAAAGTAGCTAATTAGTCCCTGAACTTTCACAAATTTT
GCAAATCGACCCAGATCG
Done.