Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 298 of 311
Found at i:97051390 original size:51 final size:51
Alignment explanation
Indices: 97051228--97051395 Score: 210
Period size: 51 Copynumber: 3.2 Consensus size: 51
97051218 ACTTCTGATC
* * * *
97051228 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTTATCAGTGATAAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCT--AC--A-CTTATC--TGATCAGTGACA
* *
97051286 AGCGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
*
97051337 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
97051388 AGTGATAA
1 AGTGATAA
97051396 ATGTGATCAG
Statistics
Matches: 103, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
51 67 0.65
53 6 0.06
54 1 0.01
56 2 0.02
58 27 0.26
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (51 bp):
AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:97052419 original size:13 final size:13
Alignment explanation
Indices: 97052401--97052450 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
97052391 ATATAAAGTA
*
97052401 AAATAAATAAAAG
1 AAATAAAGAAAAG
**
97052414 AAATAATTAAAAG
1 AAATAAAGAAAAG
97052427 -AATAAAGAAACA-
1 AAATAAAGAAA-AG
97052439 AAATAAAGAAAA
1 AAATAAAGAAAA
97052451 AAAAGTAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 9 0.28
13 23 0.72
ACGTcount: A:0.76, C:0.02, G:0.08, T:0.14
Consensus pattern (13 bp):
AAATAAAGAAAAG
Found at i:97055490 original size:6 final size:6
Alignment explanation
Indices: 97055479--97055504 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
97055469 AAGTGTCGCA
97055479 TTACTG TTACTG TTACTG TTACTG TT
1 TTACTG TTACTG TTACTG TTACTG TT
97055505 CCGAATTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (6 bp):
TTACTG
Found at i:97060078 original size:6 final size:6
Alignment explanation
Indices: 97060069--97060113 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
97060059 AAAAAGTCTA
* *
97060069 AAAAAT AAAAAT AGAAAT AAAACT AAAAAT AAAAAT -AAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
97060114 TGAATGGACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 5 0.15
6 29 0.85
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:97061661 original size:16 final size:16
Alignment explanation
Indices: 97061640--97061670 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97061630 GATATTTTAA
97061640 TATATTATATTAATAT
1 TATATTATATTAATAT
*
97061656 TATATTATGTTAATA
1 TATATTATATTAATA
97061671 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:97061767 original size:12 final size:12
Alignment explanation
Indices: 97061750--97061791 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
97061740 GAAGCAGGGG
97061750 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
97061762 AGAAAAAGGGAA
1 AGAAAAAGAGAA
*
97061774 AGAAAAATA-AA
1 AGAAAAAGAGAA
97061785 AGAAAAA
1 AGAAAAA
97061792 ACTAAGAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
11 9 0.33
12 18 0.67
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.02
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:97062776 original size:15 final size:15
Alignment explanation
Indices: 97062756--97062812 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
97062746 CGATGAATTT
97062756 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
97062771 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
97062786 ATTGAATTTATATTG
1 ATTGAATTTATATTG
97062801 ATTGAA-TTATAT
1 ATTGAATTTATAT
97062813 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:97063222 original size:23 final size:21
Alignment explanation
Indices: 97063196--97063245 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
97063186 AGACACTTTA
97063196 TGTGTCATATTTCAGGCACCTCG
1 TGTGTCATA--TCAGGCACCTCG
*
97063219 TGTGTCGTATCAGGCACCTCG
1 TGTGTCATATCAGGCACCTCG
97063240 TGTGTC
1 TGTGTC
97063246 GTTTTAGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 18 0.69
23 8 0.31
ACGTcount: A:0.14, C:0.26, G:0.26, T:0.34
Consensus pattern (21 bp):
TGTGTCATATCAGGCACCTCG
Found at i:97063246 original size:21 final size:21
Alignment explanation
Indices: 97063207--97063270 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
97063197 GTGTCATATT
97063207 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
*
97063228 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCACCTCGTGTGTCGTA
* * **
97063249 TTAGGCACTTTATGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
97063270 T
1 T
97063271 ACTGATCAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCGTA
Found at i:97066905 original size:21 final size:21
Alignment explanation
Indices: 97066881--97066930 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
97066871 ATGATGAATC
97066881 CGGCTTCTGAGATGGATCAAT
1 CGGCTTCTGAGATGGATCAAT
*
97066902 CGGCTTTTGAGATGGATCAAT
1 CGGCTTCTGAGATGGATCAAT
97066923 CGGCTTCT
1 CGGCTTCT
97066931 TTGGGGTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (21 bp):
CGGCTTCTGAGATGGATCAAT
Found at i:97068755 original size:37 final size:38
Alignment explanation
Indices: 97068714--97068806 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 38
97068704 CGGATAGATT
97068714 CGATGAGGCGTTGGTCACCAC-TTTGCTTCG-ACTTAGC
1 CGATGAGGCGTTGGTCACCACTTTTGCTTCGAAC-TAGC
* ** *
97068751 CGATGAGACGTTGGTCGTCACTTATTTGCTTCGAACTATC
1 CGATGAGGCGTTGGTCACCAC-T-TTTGCTTCGAACTAGC
*
97068791 CAATGAGGCGTTGGTC
1 CGATGAGGCGTTGGTC
97068807 GCCATTCTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
37 18 0.39
40 26 0.57
41 2 0.04
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31
Consensus pattern (38 bp):
CGATGAGGCGTTGGTCACCACTTTTGCTTCGAACTAGC
Found at i:97069730 original size:20 final size:20
Alignment explanation
Indices: 97069705--97069762 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
97069695 TGCCCACGGG
*
97069705 CAGGCCACACGGGCATGTTC
1 CAGGCCACACGGGCATGTCC
* *
97069725 CAGGCCATACGGGCGTGTCC
1 CAGGCCACACGGGCATGTCC
97069745 CAGGCCACACGGGCATGT
1 CAGGCCACACGGGCATGT
97069763 GCCCCTATCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.19, C:0.34, G:0.33, T:0.14
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTCC
Found at i:97071305 original size:30 final size:30
Alignment explanation
Indices: 97071269--97071337 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
97071259 ATGTGTCTCA
97071269 GTCGTGTGAGTCACACGGCCTGGCCACATG
1 GTCGTGTGAGTCACACGGCCTGGCCACATG
97071299 GTCGTGTGAGTCACACGGCCTGGCCACATG
1 GTCGTGTGAGTCACACGGCCTGGCCACATG
*
97071329 GCCGTGTGA
1 GTCGTGTGA
97071338 ACCTTATAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.20
Consensus pattern (30 bp):
GTCGTGTGAGTCACACGGCCTGGCCACATG
Found at i:97072015 original size:23 final size:22
Alignment explanation
Indices: 97071989--97072032 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
97071979 AATATTTGGT
97071989 ATTT-GAACCTTACATTTTTTTTA
1 ATTTAGAACC-TA-ATTTTTTTTA
*
97072012 ATTTAGTACCTAATTTTTTTT
1 ATTTAGAACCTAATTTTTTTT
97072033 GGTTCAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 9 0.47
23 6 0.32
24 4 0.21
ACGTcount: A:0.25, C:0.11, G:0.05, T:0.59
Consensus pattern (22 bp):
ATTTAGAACCTAATTTTTTTTA
Found at i:97072534 original size:31 final size:31
Alignment explanation
Indices: 97072469--97072594 Score: 120
Period size: 31 Copynumber: 4.2 Consensus size: 31
97072459 GACCCCCAAA
* * * *
97072469 AAGTTTAAGTACCAACTTGAGAAAAAAATATC
1 AAGTTTAGGTACCAAATTAAG-AAAAAATGTC
*
97072501 AAGTTTAGGTACCAAATTAAGAAAAATTGTC
1 AAGTTTAGGTACCAAATTAAGAAAAAATGTC
* *
97072532 AAGTTTGGGTACCAAATT-GGACCAAAAA----
1 AAGTTTAGGTACCAAATTAAGA--AAAAATGTC
97072560 AA-TTTAGGTACCAAATTAAGAAAAAATGTC
1 AAGTTTAGGTACCAAATTAAGAAAAAATGTC
97072590 AAGTT
1 AAGTT
97072595 CAAGTACCGA
Statistics
Matches: 76, Mismatches: 10, Indels: 17
0.74 0.10 0.17
Matches are distributed among these distances:
26 5 0.07
27 14 0.18
28 4 0.05
30 4 0.05
31 27 0.36
32 22 0.29
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (31 bp):
AAGTTTAGGTACCAAATTAAGAAAAAATGTC
Found at i:97072585 original size:27 final size:27
Alignment explanation
Indices: 97072504--97072585 Score: 67
Period size: 27 Copynumber: 2.9 Consensus size: 27
97072494 AAATATCAAG
* *
97072504 TTTAGGTACCAAATTAAGAAAAATTGTCAAG
1 TTTAGGTACCAAATTAAGAAAAA----AAAA
* * *
97072535 TTTGGGTACCAAATT-GGACCAAAAAAA
1 TTTAGGTACCAAATTAAGA-AAAAAAAA
97072562 TTTAGGTACCAAATTAAGAAAAAA
1 TTTAGGTACCAAATTAAGAAAAAA
97072586 TGTCAAGTTC
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
27 20 0.49
28 2 0.05
30 2 0.05
31 17 0.41
ACGTcount: A:0.48, C:0.11, G:0.16, T:0.26
Consensus pattern (27 bp):
TTTAGGTACCAAATTAAGAAAAAAAAA
Found at i:97080952 original size:22 final size:23
Alignment explanation
Indices: 97080926--97080974 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
97080916 TACAAGCACT
*
97080926 TATA-TGATAATA-ATAAGATATA
1 TATATTGAAAATACATAAG-TATA
97080948 TATATTTGAAAATACATAAGTATA
1 TATA-TTGAAAATACATAAGTATA
97080972 TAT
1 TAT
97080975 GAATAGAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 4 0.17
24 14 0.61
25 5 0.22
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (23 bp):
TATATTGAAAATACATAAGTATA
Found at i:97081019 original size:3 final size:3
Alignment explanation
Indices: 97081008--97081057 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
97080998 CAATAATACC
* * *
97081008 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
97081053 AAT AA
1 AAT AA
97081058 AGTTAACAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 1 0.03
3 38 0.97
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:97082655 original size:43 final size:43
Alignment explanation
Indices: 97082597--97082752 Score: 125
Period size: 43 Copynumber: 3.4 Consensus size: 43
97082587 GATCTGAAAT
* *
97082597 CTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTATCGA
1 CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCGA
* * * *
97082640 CTTCAATGTACTCCACTG-TAGTCACAGGGAGGTAGAATCTGCCATCTATGA
1 CTTCAATCTACTCCACTGCCA-AC-CAGGGAGATAGAAT-T---ATC---GA
* *
97082691 TCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGG
1 -CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCGA
* *
97082735 CTTCGATATACTCCACTG
1 CTTCAATCTACTCCACTG
97082753 TAGTCACAGT
Statistics
Matches: 87, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
42 1 0.01
43 32 0.37
44 13 0.15
45 1 0.01
47 3 0.03
48 3 0.03
50 1 0.01
51 15 0.17
52 17 0.20
53 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCGA
Found at i:97082692 original size:132 final size:131
Alignment explanation
Indices: 97082449--97082693 Score: 384
Period size: 132 Copynumber: 1.9 Consensus size: 131
97082439 AACTTTAGAG
* ** *
97082449 AGGTAAGATCTGAAATCTTCAATCTATTCCATTGTTAACCAGGGAGATAGAATTATCGCTTCAAA
1 AGGTAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTATCGCTTCAAA
*
97082514 GTACTCCACTGTAGTCACAAGGAGGTAAAATTTGCCATTACTTGATCTACTTCACTGCTGTTTAG
66 GTACTCCACTGTAGTCACAAGGAGGTAAAATCTGCCATTAC-TGATCTACTTCACTGCTGTTTAG
97082579 GA
130 GA
97082581 AGGTAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTATCGACTTCAA
1 AGGTAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTATCG-CTTCAA
* * *
97082646 TGTACTCCACTGTAGTCACAGGGAGGTAGAATCTGCCATCTA-TGATCT
65 AGTACTCCACTGTAGTCACAAGGAGGTAAAATCTGCCAT-TACTGATCT
97082694 TCAATCTATT
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
132 60 0.58
133 41 0.40
134 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (131 bp):
AGGTAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTATCGCTTCAAA
GTACTCCACTGTAGTCACAAGGAGGTAAAATCTGCCATTACTGATCTACTTCACTGCTGTTTAGG
A
Found at i:97082701 original size:95 final size:95
Alignment explanation
Indices: 97082595--97082774 Score: 306
Period size: 95 Copynumber: 1.9 Consensus size: 95
97082585 AAGATCTGAA
*
97082595 ATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTATCGACTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTATCGACTTCAATATACTCCACTGTA
*
97082660 GTCACAGGGAGGTAGAATCTGCCATCTATG
66 GTCACAGGGAGGTAAAATCTGCCATCTATG
* * *
97082690 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCGATATACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTATCGACTTCAATATACTCCACTGTA
*
97082755 GTCACAGTGAGGTAAAATCT
66 GTCACAGGGAGGTAAAATCT
97082775 CTGGCTTTAG
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 79 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTATCGACTTCAATATACTCCACTGTA
GTCACAGGGAGGTAAAATCTGCCATCTATG
Found at i:97083118 original size:87 final size:88
Alignment explanation
Indices: 97082955--97083465 Score: 697
Period size: 86 Copynumber: 5.9 Consensus size: 88
97082945 TGTAACCTTT
* ** * * *
97082955 AACCAGCTCCAAT-GCAACCGATGGAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGCTGTTAATG
1 AACCAGCTCC-ATCACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATG
** *
97083017 CAGGAAGGCAAGATCTGCT-TCTTT
64 CAGGAAGGCAAGATCTTTTGTCTTC
* * * **
97083041 AACTAGCTCCA-CTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCATTGTCAATGC
1 AACCAGCTCCATC-ACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
97083105 AGGAAGGCAAGATC-TTTGTCTTC
65 AGGAAGGCAAGATCTTTTGTCTTC
*
97083128 AACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
*
97083193 GAAAGGCAAGATCTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
97083216 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
97083281 GGAA-G--AG--CTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
*
97083299 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
97083364 GGAAGGCAAG--CTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
* * * * * *
97083385 AACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTATGTCTTCAACCTGTTTCACTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
97083450 GGAAGGCAAGATCTTT
66 GGAAGGCAAGATCTTT
97083466 AACTTCATTG
Statistics
Matches: 383, Mismatches: 30, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
83 79 0.21
84 1 0.00
85 8 0.02
86 108 0.28
87 106 0.28
88 81 0.21
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (88 bp):
AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
GGAAGGCAAGATCTTTTGTCTTC
Found at i:97085652 original size:7 final size:8
Alignment explanation
Indices: 97085627--97085656 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
97085617 CTATTTTGAC
97085627 TTTGATTTT
1 TTTGA-TTT
97085636 TTTGATTT
1 TTTGATTT
97085644 TTTGATTT
1 TTTGATTT
97085652 TTTGA
1 TTTGA
97085657 ATTCATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (8 bp):
TTTGATTT
Found at i:97090563 original size:36 final size:36
Alignment explanation
Indices: 97090523--97090602 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
97090513 ATACATATAA
* *
97090523 ATATATATACT-TATAAAAATAAAAAT-ATGTATATGT
1 ATATATATA-TATATAAAAAGAAAAATGA-GTATACGT
* *
97090559 ATATAGATATATATAAAAAGAAATATGAGTATACGT
1 ATATATATATATATAAAAAGAAAAATGAGTATACGT
97090595 ATATATAT
1 ATATATAT
97090603 TAAACAAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
35 1 0.03
36 35 0.95
37 1 0.03
ACGTcount: A:0.53, C:0.03, G:0.09, T:0.36
Consensus pattern (36 bp):
ATATATATATATATAAAAAGAAAAATGAGTATACGT
Found at i:97090675 original size:22 final size:23
Alignment explanation
Indices: 97090649--97090697 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
97090639 TACAAGCACT
*
97090649 TATA-TGATAATA-ATAAGATATA
1 TATATTGAAAATACATAAG-TATA
97090671 TATATTTGAAAATACATAAGTATA
1 TATA-TTGAAAATACATAAGTATA
97090695 TAT
1 TAT
97090698 GAATAGAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 4 0.17
24 14 0.61
25 5 0.22
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (23 bp):
TATATTGAAAATACATAAGTATA
Found at i:97090742 original size:3 final size:3
Alignment explanation
Indices: 97090731--97090789 Score: 75
Period size: 3 Copynumber: 19.7 Consensus size: 3
97090721 CAATAATACC
* * *
97090731 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
97090776 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
97090790 AGTTAACAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
2 1 0.02
3 47 0.98
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:97111775 original size:16 final size:16
Alignment explanation
Indices: 97111754--97111799 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
97111744 TTATTAAATT
97111754 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
97111770 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
97111785 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
97111800 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:97111873 original size:120 final size:120
Alignment explanation
Indices: 97111660--97111917 Score: 507
Period size: 120 Copynumber: 2.1 Consensus size: 120
97111650 GGCAGTTGAC
97111660 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
97111725 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
97111780 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
97111845 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
97111900 TAATAATTATGTTTAAAT
1 TAATAATTATG-TTAAAT
97111918 ATGATTAAAT
Statistics
Matches: 137, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
120 131 0.96
121 6 0.04
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
Found at i:97111895 original size:16 final size:16
Alignment explanation
Indices: 97111874--97111915 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
97111864 TTATTAAATT
*
97111874 ATATATTTTAATTATA
1 ATATATTTTAATAATA
97111890 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
97111905 AT-TATGTTTAA
1 ATATAT-TTTAA
97111916 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:97111900 original size:15 final size:15
Alignment explanation
Indices: 97111865--97111906 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
97111855 TTAAGAATTT
*
97111865 TATTAAATTAT-ATA
1 TATTTAATTATAATA
97111879 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
97111893 TATTTAATAATAAT
1 TATTTAATTATAAT
97111907 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:97112137 original size:45 final size:44
Alignment explanation
Indices: 97112052--97112142 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
97112042 ACCTCTATTC
*
97112052 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
*** * *
97112096 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTGTTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCCATTA
97112141 CA
1 CA
97112143 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.33, C:0.29, G:0.07, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
Found at i:97112975 original size:21 final size:20
Alignment explanation
Indices: 97112926--97112975 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
97112916 ATATGAAAAG
97112926 ATAAAATAAAAAAAACCATC
1 ATAAAATAAAAAAAACCATC
* * *
97112946 AAAATAATAATAATAACCATTC
1 ATAA-AATAAAAAAAACCA-TC
97112968 ATAAAATA
1 ATAAAATA
97112976 GTAAATTAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 3 0.12
21 16 0.67
22 5 0.21
ACGTcount: A:0.66, C:0.12, G:0.00, T:0.22
Consensus pattern (20 bp):
ATAAAATAAAAAAAACCATC
Found at i:97114294 original size:20 final size:18
Alignment explanation
Indices: 97114265--97114324 Score: 61
Period size: 17 Copynumber: 3.3 Consensus size: 18
97114255 AAAAAAGATT
*
97114265 AAATATAAATCTTAAATAA
1 AAATAAAAAT-TTAAATAA
*
97114284 ATAATAGAAA-TTAAATAA
1 A-AATAAAAATTTAAATAA
*
97114302 AAATAAAAA-TGAAATAA
1 AAATAAAAATTTAAATAA
97114319 AAATAA
1 AAATAA
97114325 GTAGAACAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 20 0.54
18 9 0.24
19 1 0.03
20 7 0.19
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.25
Consensus pattern (18 bp):
AAATAAAAATTTAAATAA
Found at i:97114311 original size:17 final size:17
Alignment explanation
Indices: 97114276--97114324 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
97114266 AATATAAATC
*
97114276 TTAAATAAATAATAGAAA
1 TTAAATAAA-AATAAAAA
97114294 TTAAATAAAAATAAAAA
1 TTAAATAAAAATAAAAA
*
97114311 TGAAATAAAAATAA
1 TTAAATAAAAATAA
97114325 GTAGAACAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 20 0.69
18 9 0.31
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (17 bp):
TTAAATAAAAATAAAAA
Found at i:97115665 original size:13 final size:13
Alignment explanation
Indices: 97115647--97115672 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97115637 TATAGATTAT
97115647 TATTTTTTATATA
1 TATTTTTTATATA
97115660 TATTTTTTATATA
1 TATTTTTTATATA
97115673 ACATTAGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TATTTTTTATATA
Found at i:97125897 original size:29 final size:30
Alignment explanation
Indices: 97125855--97125912 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
97125845 CTATTTCCAC
*
97125855 ACATCATTAAAATTTTA-ATAGTTTTGCAT
1 ACATCATTAAAATTTTAGATACTTTTGCAT
* *
97125884 ACATTATTACAATTTTAGATACTTTTGCA
1 ACATCATTAAAATTTTAGATACTTTTGCA
97125913 GGGAATCTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (30 bp):
ACATCATTAAAATTTTAGATACTTTTGCAT
Found at i:97134303 original size:14 final size:15
Alignment explanation
Indices: 97134284--97134312 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
97134274 TTAAATCAAA
97134284 ATAATATA-AAATTT
1 ATAATATATAAATTT
97134298 ATAATATATAAATTT
1 ATAATATATAAATTT
97134313 TATCAAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATATATAAATTT
Found at i:97137752 original size:26 final size:27
Alignment explanation
Indices: 97137688--97137753 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
97137678 ATTGCAACAC
* *
97137688 TAATTATAATTTATAATTAATATATTAA
1 TAATTATAATTT-TAAATAAAATATTAA
97137716 TAA--ATACATTTTAAATAAAATA-TAA
1 TAATTATA-ATTTTAAATAAAATATTAA
97137741 TAATTATAATTTT
1 TAATTATAATTTT
97137754 GATTTATGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
25 6 0.18
26 17 0.52
27 7 0.21
28 3 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (27 bp):
TAATTATAATTTTAAATAAAATATTAA
Found at i:97138061 original size:13 final size:13
Alignment explanation
Indices: 97138043--97138077 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
97138033 AGTTTGACAA
97138043 TACTTTTGAGAAG
1 TACTTTTGAGAAG
97138056 TACTTTTGAGAAG
1 TACTTTTGAGAAG
97138069 TACTTTTGA
1 TACTTTTGA
97138078 AAATTTTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.43
Consensus pattern (13 bp):
TACTTTTGAGAAG
Found at i:97140225 original size:72 final size:71
Alignment explanation
Indices: 97140101--97140271 Score: 236
Period size: 72 Copynumber: 2.4 Consensus size: 71
97140091 AAAATCATAT
** *
97140101 ATAAACAACTATTGATAAAACTAATTTAGTATAAATAAGTAGAACATAAATTCAATAACCAAAGA
1 ATAAACAACTATTGATAAAACTAATTTAACATAAATAAGTAGAACATAAATTCAATAACCAAAAA
97140166 CCAAAC
66 CCAAAC
* * * *
97140172 ATAAACAACTATTAATAAAAGTAGA-TTACACATAGATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTA-ATTTA-ACATAAATAAGTAGAACATAAATTCAATAACCAAA
97140236 AACCAAAC
64 AACCAAAC
* *
97140244 ATAAATAACTATTGATAAAACTAGTTTA
1 ATAAACAACTATTGATAAAACTAATTTA
97140272 GGATTTTTGT
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
71 24 0.28
72 62 0.72
ACGTcount: A:0.54, C:0.13, G:0.07, T:0.25
Consensus pattern (71 bp):
ATAAACAACTATTGATAAAACTAATTTAACATAAATAAGTAGAACATAAATTCAATAACCAAAAA
CCAAAC
Found at i:97140721 original size:18 final size:18
Alignment explanation
Indices: 97140698--97140743 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
97140688 CATCAATTTG
*
97140698 AACATCATTTGAAATGTA
1 AACATCATTTAAAATGTA
*
97140716 AACATCATTTAAAATGTG
1 AACATCATTTAAAATGTA
97140734 AACATCATTT
1 AACATCATTT
97140744 CTCACATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (18 bp):
AACATCATTTAAAATGTA
Found at i:97143070 original size:27 final size:27
Alignment explanation
Indices: 97143033--97143088 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
97143023 AAACTAGAGA
97143033 AGAAAATATTGTTGAAAATTAAAATGG
1 AGAAAATATTGTTGAAAATTAAAATGG
*
97143060 AGAAAATATTGTTGAAAGTTAAAATGG
1 AGAAAATATTGTTGAAAATTAAAATGG
97143087 AG
1 AG
97143089 GAACAAAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (27 bp):
AGAAAATATTGTTGAAAATTAAAATGG
Found at i:97147561 original size:41 final size:40
Alignment explanation
Indices: 97147515--97147594 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 40
97147505 AATTTTCTAT
97147515 AAAGTTATGGAAAAAATTATATTATTTATAAAAATGTTATG
1 AAAGTTATGGAAAAAATTATATT-TTTATAAAAATGTTATG
* * * * *
97147556 AAAGTTATTGAATAATTTATATTTTTTTATAAATGTTAT
1 AAAGTTATGGAAAAAATTATATTTTTATAAAAATGTTAT
97147595 AGATTATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
40 14 0.41
41 20 0.59
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (40 bp):
AAAGTTATGGAAAAAATTATATTTTTATAAAAATGTTATG
Found at i:97147948 original size:19 final size:21
Alignment explanation
Indices: 97147909--97147957 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
97147899 TTTGTTTAAA
*
97147909 AATTATTTTTATCATACTAAT
1 AATTATTTTTATCATAATAAT
*
97147930 AA-TATTTTT-TTATAATAAT
1 AATTATTTTTATCATAATAAT
97147949 AATTATTTT
1 AATTATTTT
97147958 AAAATTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.40
20 13 0.52
21 2 0.08
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (21 bp):
AATTATTTTTATCATAATAAT
Found at i:97147967 original size:17 final size:18
Alignment explanation
Indices: 97147926--97147972 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
97147916 TTTATCATAC
* *
97147926 TAATAATATTTTTTTATAA
1 TAATAA-ATTATTTTAAAA
97147945 TAAT-AATTATTTTAAAA
1 TAATAAATTATTTTAAAA
*
97147962 TTATAAATTAT
1 TAATAAATTAT
97147973 GCAATTGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 13 0.54
18 7 0.29
19 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATAAATTATTTTAAAA
Found at i:97149836 original size:9 final size:9
Alignment explanation
Indices: 97149808--97149867 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
97149798 AACATCTTCC
97149808 TTTAATTAA
1 TTTAATTAA
*
97149817 TTTAGA-AAA
1 TTTA-ATTAA
*
97149826 TTCAATTAA
1 TTTAATTAA
*
97149835 TTTAATTTA
1 TTTAATTAA
97149844 TTTAATTAAAA
1 TTTAATT--AA
*
97149855 ATTAATTAA
1 TTTAATTAA
97149864 TTTA
1 TTTA
97149868 TTTGCCTAGA
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
8 1 0.03
9 30 0.77
10 1 0.03
11 7 0.18
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (9 bp):
TTTAATTAA
Found at i:97153037 original size:34 final size:34
Alignment explanation
Indices: 97152996--97153065 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
97152986 TTTTCCCTGA
97152996 ATGGCAACCTTATTGATTACTAGTGGTAGTCATT
1 ATGGCAACCTTATTGATTACTAGTGGTAGTCATT
97153030 ATGGCAACCTTATTGATTACTAGTGGTAGTCATT
1 ATGGCAACCTTATTGATTACTAGTGGTAGTCATT
97153064 AT
1 AT
97153066 CTTATCACCG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (34 bp):
ATGGCAACCTTATTGATTACTAGTGGTAGTCATT
Found at i:97160073 original size:22 final size:22
Alignment explanation
Indices: 97160045--97160089 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
97160035 AAATAATATT
97160045 ATTTTTTAT-TTGTAACAATTTA
1 ATTTTTTATATTGTAA-AATTTA
*
97160067 ATTTTTTATATTTTAAAATTTA
1 ATTTTTTATATTGTAAAATTTA
97160089 A
1 A
97160090 GTTAGAAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTTTTTATATTGTAAAATTTA
Found at i:97163114 original size:15 final size:15
Alignment explanation
Indices: 97163065--97163117 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 15
97163055 TAAAGTCAAG
97163065 TAAATATATTTAAACA
1 TAAA-ATATTTAAACA
*
97163081 T--AATTTTTCAAA-A
1 TAAAATATTT-AAACA
97163094 -AAAATATTTAAACA
1 TAAAATATTTAAACA
97163108 TAAAATATTT
1 TAAAATATTT
97163118 TTATTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 11
0.70 0.05 0.26
Matches are distributed among these distances:
13 9 0.30
14 11 0.37
15 9 0.30
16 1 0.03
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.40
Consensus pattern (15 bp):
TAAAATATTTAAACA
Found at i:97163130 original size:5 final size:6
Alignment explanation
Indices: 97163113--97163140 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
97163103 AAACATAAAA
97163113 TATTTT TATTTT TATTTT TATTTT TATT
1 TATTTT TATTTT TATTTT TATTTT TATT
97163141 CTAGTTTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TATTTT
Found at i:97163701 original size:11 final size:11
Alignment explanation
Indices: 97163685--97163719 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
97163675 TATTTTTATG
97163685 ATTTAAAAATT
1 ATTTAAAAATT
*
97163696 ATTTAAAAACT
1 ATTTAAAAATT
97163707 ATTTAAAAATT
1 ATTTAAAAATT
97163718 AT
1 AT
97163720 AAAAAACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (11 bp):
ATTTAAAAATT
Found at i:97163724 original size:21 final size:22
Alignment explanation
Indices: 97163685--97163731 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
97163675 TATTTTTATG
*
97163685 ATTTAAAAATTATTTAAAAACT
1 ATTTAAAAATTATTAAAAAACT
97163707 ATTTAAAAATTA-TAAAAAACT
1 ATTTAAAAATTATTAAAAAACT
97163728 ATTT
1 ATTT
97163732 TTTAATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTTAAAAATTATTAAAAAACT
Found at i:97163745 original size:21 final size:21
Alignment explanation
Indices: 97163685--97163754 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
97163675 TATTTTTATG
97163685 ATTTAAAAATTATTTAAAAACT
1 ATTTAAAAATT-TTTAAAAACT
* *
97163707 ATTTAAAAATTATAAAAAACT
1 ATTTAAAAATTTTTAAAAACT
***
97163728 ATTTTTTAATTTTTAAAAA-T
1 ATTTAAAAATTTTTAAAAACT
*
97163748 AATTAAA
1 ATTTAAA
97163755 TGCTAGTATG
Statistics
Matches: 37, Mismatches: 11, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
20 4 0.11
21 22 0.59
22 11 0.30
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (21 bp):
ATTTAAAAATTTTTAAAAACT
Found at i:97170538 original size:2 final size:2
Alignment explanation
Indices: 97170533--97170568 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
97170523 GTGCAGAGAG
*
97170533 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
97170569 AACAGAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:97173498 original size:21 final size:21
Alignment explanation
Indices: 97173472--97173512 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97173462 ATTTCTTTTA
97173472 TTTTTTAACAAAATTTTAAGG
1 TTTTTTAACAAAATTTTAAGG
* *
97173493 TTTTTTAAGAAATTTTTAAG
1 TTTTTTAACAAAATTTTAAG
97173513 AATGATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (21 bp):
TTTTTTAACAAAATTTTAAGG
Found at i:97176248 original size:16 final size:16
Alignment explanation
Indices: 97176227--97176262 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
97176217 TTTGGTTCGC
97176227 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
97176243 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
97176259 TGTA
1 TGTA
97176263 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:97176518 original size:16 final size:16
Alignment explanation
Indices: 97176478--97176532 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
97176468 TTAATCATAT
*
97176478 TTAAACATA-ATTTTTA
1 TTAAA-ATATATTTTAA
97176494 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
97176509 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
97176527 -TAAAAT
1 TTAAAAT
97176533 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:97176525 original size:18 final size:17
Alignment explanation
Indices: 97176498--97176532 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
97176488 TTTTTATTAA
*
97176498 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
97176516 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
97176533 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:97176644 original size:18 final size:17
Alignment explanation
Indices: 97176617--97176651 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
97176607 TTACTATTAA
*
97176617 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
97176635 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
97176652 TCTTAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:97176780 original size:120 final size:119
Alignment explanation
Indices: 97176476--97176758 Score: 435
Period size: 119 Copynumber: 2.4 Consensus size: 119
97176466 ATTTAATCAT
*
97176476 ATTTAAACATAATTTTTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAAT-
* * * *
97176541 ATT-AATATTTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATA
64 ATTAAATATTTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
* *
97176596 AATTAACATAATTACTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
* *
97176661 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATGAAATATA
66 TAAATATT-TTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
*
97176716 ATTTAACATAATTATTATTAAATATAATTTAA-TAAAATATATA
1 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATA
97176759 TTTTCAATTA
Statistics
Matches: 149, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
118 3 0.02
119 74 0.50
120 72 0.48
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.45
Consensus pattern (119 bp):
ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
TAAATATTTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
Found at i:97178691 original size:19 final size:19
Alignment explanation
Indices: 97178667--97178703 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
97178657 ATAAAATATT
97178667 ATCGTTCAGGTACATATAC
1 ATCGTTCAGGTACATATAC
*
97178686 ATCGTTCAGGTGCATATA
1 ATCGTTCAGGTACATATA
97178704 GAGGTCATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (19 bp):
ATCGTTCAGGTACATATAC
Found at i:97179757 original size:15 final size:15
Alignment explanation
Indices: 97179733--97179762 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
97179723 GGAGGGTAAA
*
97179733 ACAGAGAGCAAATCG
1 ACAGAAAGCAAATCG
97179748 ACAGAAAGCAAATCG
1 ACAGAAAGCAAATCG
97179763 GCCAAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.20, G:0.23, T:0.07
Consensus pattern (15 bp):
ACAGAAAGCAAATCG
Found at i:97181682 original size:2 final size:2
Alignment explanation
Indices: 97181675--97181703 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
97181665 ACCTTCACTT
97181675 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97181704 TCTACAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97182443 original size:6 final size:6
Alignment explanation
Indices: 97182427--97182456 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
97182417 TAATTAAATA
*
97182427 CAAAAG AAAAAG CAAAAG CAAAAG CAAAAG
1 CAAAAG CAAAAG CAAAAG CAAAAG CAAAAG
97182457 GGTTAGGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.70, C:0.13, G:0.17, T:0.00
Consensus pattern (6 bp):
CAAAAG
Found at i:97186819 original size:30 final size:30
Alignment explanation
Indices: 97186772--97186839 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
97186762 GGCACAATAA
* *
97186772 TAAATACTCAAAATTTGAGGGATTAA-AGTG
1 TAAATA-TCAAAATTTGAAGGACTAATAGTG
*
97186802 TAAATATGAAAATTTTGAAGGACTAATAGTG
1 TAAATATCAAAA-TTTGAAGGACTAATAGTG
*
97186833 CAAATAT
1 TAAATAT
97186840 TTTAACGGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.16
30 17 0.53
31 10 0.31
ACGTcount: A:0.46, C:0.06, G:0.18, T:0.31
Consensus pattern (30 bp):
TAAATATCAAAATTTGAAGGACTAATAGTG
Found at i:97187100 original size:29 final size:31
Alignment explanation
Indices: 97187054--97187115 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 31
97187044 TATAATTATA
*
97187054 TAATTAGATAATTATTATT-TATTTAATATTT
1 TAATAAGATAATTATTATTAT-TTTAATATTT
*
97187085 TAATAAGAT-ATT-TTATTATTTTATTATTT
1 TAATAAGATAATTATTATTATTTTAATATTT
97187114 TA
1 TA
97187116 TTTAGTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 16 0.57
30 4 0.14
31 8 0.29
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (31 bp):
TAATAAGATAATTATTATTATTTTAATATTT
Found at i:97187104 original size:8 final size:8
Alignment explanation
Indices: 97187093--97187117 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
97187083 TTTAATAAGA
97187093 TATTTTAT
1 TATTTTAT
97187101 TATTTTAT
1 TATTTTAT
97187109 TATTTTAT
1 TATTTTAT
97187117 T
1 T
97187118 TAGTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:97187544 original size:17 final size:17
Alignment explanation
Indices: 97187522--97187555 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
97187512 CTTGATATGT
97187522 TAGTGAAGAAAAAAATA
1 TAGTGAAGAAAAAAATA
97187539 TAGTGAAGAAAAAAATA
1 TAGTGAAGAAAAAAATA
97187556 AGAGAAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.18
Consensus pattern (17 bp):
TAGTGAAGAAAAAAATA
Found at i:97189855 original size:25 final size:25
Alignment explanation
Indices: 97189827--97189878 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
97189817 TCATATTTTA
97189827 ACTAAGTAATAAATTGAGTAAGGTG
1 ACTAAGTAATAAATTGAGTAAGGTG
97189852 ACTAAGTAATAAATTGAGTAAGGTG
1 ACTAAGTAATAAATTGAGTAAGGTG
97189877 AC
1 AC
97189879 ATTGGTGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (25 bp):
ACTAAGTAATAAATTGAGTAAGGTG
Found at i:97190811 original size:32 final size:32
Alignment explanation
Indices: 97190774--97190839 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
97190764 ATTGATAGAT
97190774 TATAAGCTTGATGTTAAAATAGAACTATTTTG
1 TATAAGCTTGATGTTAAAATAGAACTATTTTG
97190806 TATAAGCTTGATGTTAAAATAGAACTATTTTG
1 TATAAGCTTGATGTTAAAATAGAACTATTTTG
97190838 TA
1 TA
97190840 AAGTAATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.41
Consensus pattern (32 bp):
TATAAGCTTGATGTTAAAATAGAACTATTTTG
Found at i:97195323 original size:27 final size:27
Alignment explanation
Indices: 97195249--97195328 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 27
97195239 TTTACAATGC
* * *
97195249 GCCATAAATGTTATTCTTTTAGAA-TTT
1 GCCACAAAGGTTATTCTTTCA-AAGTTT
* *
97195276 GCCACAAAGGCTACTT-ATTCAAAGTTT
1 GCCACAAAGGTTA-TTCTTTCAAAGTTT
*
97195303 GCCACAAAGGTTATTCTTTCAGAGTT
1 GCCACAAAGGTTATTCTTTCAAAGTT
97195329 GGTCACGTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
26 4 0.10
27 36 0.86
28 2 0.05
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (27 bp):
GCCACAAAGGTTATTCTTTCAAAGTTT
Found at i:97204897 original size:41 final size:42
Alignment explanation
Indices: 97204830--97204910 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 42
97204820 GATGCAGGGG
* *
97204830 TCACACGGTCTATCAACATACCCGTGTG-CAAGTCGTGTGTC
1 TCACACGGTCTATCAACACACCCGTGTGACAAGCCGTGTGTC
* *
97204871 TCACACGGTCTGATC-ACACGCTCGTGTGACAAGCCGTGTG
1 TCACACGGTCT-ATCAACACACCCGTGTGACAAGCCGTGTG
97204911 GACTCAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 21 0.62
42 13 0.38
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.25
Consensus pattern (42 bp):
TCACACGGTCTATCAACACACCCGTGTGACAAGCCGTGTGTC
Found at i:97205723 original size:6 final size:6
Alignment explanation
Indices: 97205712--97205737 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
97205702 ACAAGTCTGA
97205712 AACAGT AACAGT AACAGT AACAGT AA
1 AACAGT AACAGT AACAGT AACAGT AA
97205738 GGCGACACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (6 bp):
AACAGT
Found at i:97209185 original size:26 final size:26
Alignment explanation
Indices: 97209156--97209243 Score: 86
Period size: 26 Copynumber: 3.3 Consensus size: 26
97209146 TTTTGAATTT
97209156 TTTTAATTTTTTTTTCATTTACGTAA
1 TTTTAATTTTTTTTTCATTTACGTAA
** ** ** *
97209182 TTTTAATTAATTTTAAATTTTAAATAT
1 TTTTAATTTTTTTTTCA-TTTACGTAA
*
97209209 TATTTAATATTTTTTTCATTTACGTAA
1 T-TTTAATTTTTTTTTCATTTACGTAA
97209236 TTTTAATT
1 TTTTAATT
97209244 AATTTGTAAT
Statistics
Matches: 44, Mismatches: 16, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
26 19 0.43
27 14 0.32
28 11 0.25
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (26 bp):
TTTTAATTTTTTTTTCATTTACGTAA
Found at i:97209255 original size:54 final size:53
Alignment explanation
Indices: 97209139--97209248 Score: 184
Period size: 54 Copynumber: 2.1 Consensus size: 53
97209129 TAACAGTTTG
* * *
97209139 TTTTAAATTTTGAATTTTTTTAATTTTTTTTTCATTTACGTAATTTTAATTAA
1 TTTTAAATTTTAAATTTATTTAATATTTTTTTCATTTACGTAATTTTAATTAA
97209192 TTTTAAATTTTAAATATTATTTAATATTTTTTTCATTTACGTAATTTTAATTAA
1 TTTTAAATTTTAAAT-TTATTTAATATTTTTTTCATTTACGTAATTTTAATTAA
97209246 TTT
1 TTT
97209249 GTAATTTATA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 14 0.26
54 39 0.74
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.63
Consensus pattern (53 bp):
TTTTAAATTTTAAATTTATTTAATATTTTTTTCATTTACGTAATTTTAATTAA
Found at i:97228828 original size:22 final size:21
Alignment explanation
Indices: 97228803--97228847 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
97228793 CAAACATATA
97228803 ATTTTATAAATTTTAAAGCGTC
1 ATTTT-TAAATTTTAAAGCGTC
** *
97228825 ATTTTTGCATTTTAAAGGGTC
1 ATTTTTAAATTTTAAAGCGTC
97228846 AT
1 AT
97228848 AGCTCTTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.47
Consensus pattern (21 bp):
ATTTTTAAATTTTAAAGCGTC
Found at i:97229432 original size:29 final size:30
Alignment explanation
Indices: 97229383--97229443 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
97229373 TTTATTTTAC
97229383 TGTTAATTTTCTTATTATTTTA-AAGGCATT
1 TGTTAATTTTCTTATTATTTTAGAA-GCATT
97229413 TGTTAATTTT-TTATTATTTTAGAAGCATT
1 TGTTAATTTTCTTATTATTTTAGAAGCATT
97229442 TG
1 TG
97229444 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 18 0.60
30 12 0.40
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.57
Consensus pattern (30 bp):
TGTTAATTTTCTTATTATTTTAGAAGCATT
Found at i:97235469 original size:32 final size:32
Alignment explanation
Indices: 97235426--97235502 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
97235416 CAAAATAAAT
** *
97235426 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
97235458 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
97235490 GATGAAAAGTTAC
1 TATGAAAAGTTAC
97235503 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:97239975 original size:32 final size:32
Alignment explanation
Indices: 97239932--97240008 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
97239922 CAAAATAAAT
** *
97239932 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
97239964 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
97239996 GATGAAAAGTTAC
1 TATGAAAAGTTAC
97240009 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:97240331 original size:15 final size:15
Alignment explanation
Indices: 97240311--97240357 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
97240301 GCTACCCCCA
*
97240311 CCACCACCTCCACCT
1 CCACCACCTCCACCG
*
97240326 CCACCACCGCCACCG
1 CCACCACCTCCACCG
*
97240341 CCACCTCCTCCACCG
1 CCACCACCTCCACCG
97240356 CC
1 CC
97240358 GCCTCCCCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.17, C:0.68, G:0.06, T:0.09
Consensus pattern (15 bp):
CCACCACCTCCACCG
Found at i:97240338 original size:21 final size:21
Alignment explanation
Indices: 97240308--97240371 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
97240298 AGTGCTACCC
*
97240308 CCACCACCACCTCCACCTCCA
1 CCACCGCCACCTCCACCTCCA
* *
97240329 CCACCGCCACCGCCACCTCCT
1 CCACCGCCACCTCCACCTCCA
* *
97240350 CCACCGCCGCCTCCCCCTCCA
1 CCACCGCCACCTCCACCTCCA
97240371 C
1 C
97240372 TAGAAGGTGG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.16, C:0.69, G:0.06, T:0.09
Consensus pattern (21 bp):
CCACCGCCACCTCCACCTCCA
Found at i:97240362 original size:15 final size:15
Alignment explanation
Indices: 97240311--97240363 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
97240301 GCTACCCCCA
* *
97240311 CCACCACCTCCACCT
1 CCACCTCCTCCACCG
* *
97240326 CCACCACCGCCACCG
1 CCACCTCCTCCACCG
97240341 CCACCTCCTCCACCG
1 CCACCTCCTCCACCG
*
97240356 CCGCCTCC
1 CCACCTCC
97240364 CCCTCCACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.15, C:0.68, G:0.08, T:0.09
Consensus pattern (15 bp):
CCACCTCCTCCACCG
Found at i:97240440 original size:16 final size:16
Alignment explanation
Indices: 97240401--97240440 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
97240391 AGAAGGTGGT
97240401 GGGTTT-GTAACAGGA
1 GGGTTTGGTAACAGGA
*
97240416 GGG-TTGGTAACGGGA
1 GGGTTTGGTAACAGGA
97240431 GGGTTTGGTA
1 GGGTTTGGTA
97240441 TTGGTGGGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 2 0.09
15 14 0.64
16 6 0.27
ACGTcount: A:0.20, C:0.05, G:0.47, T:0.28
Consensus pattern (16 bp):
GGGTTTGGTAACAGGA
Found at i:97250998 original size:54 final size:54
Alignment explanation
Indices: 97250916--97251025 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
97250906 CTTTCCATAG
*
97250916 TGATCACTTTTCTTCCCCATTTTGGATGATATTTGGTTGATACCTATGCACCAA
1 TGATCACTTTTCTTCCCCATTTCGGATGATATTTGGTTGATACCTATGCACCAA
*
97250970 TGATCACTTTTCTTCCCCATTTCGGATGATATTTGGTTGATTCCTATGCACCAA
1 TGATCACTTTTCTTCCCCATTTCGGATGATATTTGGTTGATACCTATGCACCAA
97251024 TG
1 TG
97251026 CTTTGAAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (54 bp):
TGATCACTTTTCTTCCCCATTTCGGATGATATTTGGTTGATACCTATGCACCAA
Found at i:97252710 original size:46 final size:47
Alignment explanation
Indices: 97252632--97252788 Score: 230
Period size: 46 Copynumber: 3.4 Consensus size: 47
97252622 TGTCATAGTG
* * *
97252632 TCTTTCAACTATGGTGTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTTCATGTCATGTTGCCATGGTA
*
97252678 TCTTTCAACCATGGTCTTATTC-TTTTCATGTCATATTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTTCATGTCATGTTGCCATGGTA
* * *
97252724 TCTTTCAACCATGGTCTTATTCATTTT-ATATCACGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTTCATGTCATGTTGCCATGGTA
97252770 TCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTA
97252789 CACATTTCAT
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
45 5 0.05
46 92 0.91
47 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.44
Consensus pattern (47 bp):
TCTTTCAACCATGGTCTTATTCATTTTCATGTCATGTTGCCATGGTA
Found at i:97253575 original size:10 final size:10
Alignment explanation
Indices: 97253562--97253589 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
97253552 TATAAAATAT
97253562 CATAATTTTC
1 CATAATTTTC
97253572 CATAATTTTC
1 CATAATTTTC
97253582 CATAATTT
1 CATAATTT
97253590 CAACATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (10 bp):
CATAATTTTC
Found at i:97255007 original size:11 final size:11
Alignment explanation
Indices: 97254945--97255013 Score: 68
Period size: 11 Copynumber: 6.1 Consensus size: 11
97254935 ATATATACTA
*
97254945 AATAAAATAAT
1 AATAAAATATT
*
97254956 AATAAAATAAT
1 AATAAAATATT
*
97254967 AATAAAATATC
1 AATAAAATATT
*
97254978 ATTTAAAA-ATT
1 A-ATAAAATATT
97254989 AAATTAAAATATT
1 -AA-TAAAATATT
97255002 AATAAAATATT
1 AATAAAATATT
97255013 A
1 A
97255014 TTTATTTATT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
11 33 0.67
12 13 0.27
13 3 0.06
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (11 bp):
AATAAAATATT
Found at i:97258214 original size:91 final size:91
Alignment explanation
Indices: 97258079--97258335 Score: 318
Period size: 91 Copynumber: 2.8 Consensus size: 91
97258069 TTTGACATGA
* * * * * *
97258079 TGCCATAGTGTCTTTCAACTATGGTGTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTTAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
*
97258144 CATGGTCTTATTCATTTTATGTCACAC
66 CATGGTCTTATTC-TTTCATGTCACAC
* * * * *
97258171 TGCC-TGTTATCTTTCAACCATGATCTTATTCATTTCCCGTCATGTTGCCATGTTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
**
97258235 CATGGTCTTATTCTTTCATGTCACGT
66 CATGGTCTTATTCTTTCATGTCACAC
* ** * * *
97258261 TGCCATGGTATCTTTCAACCATGGTCTTCCAGATTTCATATCGTGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
97258326 CATGGTCTTA
66 CATGGTCTTA
97258336 CACATTTCAT
Statistics
Matches: 139, Mismatches: 25, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
90 14 0.10
91 121 0.87
92 4 0.03
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCTTTCATGTCACAC
Found at i:97258343 original size:46 final size:46
Alignment explanation
Indices: 97258074--97258345 Score: 289
Period size: 46 Copynumber: 6.0 Consensus size: 46
97258064 TTATCTTTGA
* * * * *
97258074 CATGATGCCATAGTGTCTTTCAACTATGGTGTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
* * *
97258120 CATGTTGCCATGGTATCTTTTAACCATGGTCTTATTCATTTTATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
*** * * * **
97258166 CACACTGCC-TGTTATCTTTCAACCATGATCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
97258211 CATGTTGCCATGTTATCTTTCAACCATGGTCTTATTC-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * ** *
97258256 CACGTTGCCATGGTATCTTTCAACCATGGTCTTCCAGATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
97258302 CGTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
97258346 TTCAGAAAGC
Statistics
Matches: 189, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
45 76 0.40
46 113 0.60
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:97260499 original size:11 final size:11
Alignment explanation
Indices: 97260483--97260513 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
97260473 ATATATACTA
97260483 AATAAAATAAT
1 AATAAAATAAT
97260494 AATAAAATAAT
1 AATAAAATAAT
97260505 AATAAAATA
1 AATAAAATA
97260514 TCATTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:97260545 original size:11 final size:11
Alignment explanation
Indices: 97260483--97260551 Score: 59
Period size: 11 Copynumber: 6.1 Consensus size: 11
97260473 ATATATACTA
*
97260483 AATAAAATAAT
1 AATAAAATATT
*
97260494 AATAAAATAAT
1 AATAAAATATT
*
97260505 AATAAAATATC
1 AATAAAATATT
*
97260516 ATTTAAAA-ATT
1 A-ATAAAATATT
97260527 AAATTAAAATATT
1 -AA-TAAAATATT
*
97260540 AATAAACTATT
1 AATAAAATATT
97260551 A
1 A
97260552 TTTATTTATT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
11 32 0.67
12 13 0.27
13 3 0.06
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (11 bp):
AATAAAATATT
Found at i:97262315 original size:15 final size:15
Alignment explanation
Indices: 97262295--97262324 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97262285 TTTCAGTAGG
97262295 AACAACAAAATTGTT
1 AACAACAAAATTGTT
97262310 AACAACAAAATTGTT
1 AACAACAAAATTGTT
97262325 TTTCAAGTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.07, T:0.27
Consensus pattern (15 bp):
AACAACAAAATTGTT
Found at i:97270785 original size:53 final size:53
Alignment explanation
Indices: 97270629--97270794 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
97270619 GACGAAAAAT
* **
97270629 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
97270681 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
97270734 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
97270788 TATGTGA
1 -ATGTGA
97270795 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:97278294 original size:53 final size:53
Alignment explanation
Indices: 97278138--97278303 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
97278128 GACGAAAAAT
* **
97278138 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
97278190 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
97278243 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
97278297 TATGTGA
1 -ATGTGA
97278304 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:97280935 original size:58 final size:57
Alignment explanation
Indices: 97280845--97281009 Score: 216
Period size: 51 Copynumber: 3.0 Consensus size: 57
97280835 ACTTCTGATC
* * *
97280845 AGTGACAAGTGATAAGTAGTAGCCTCAGCTACACTTATGTGATCAGTGATAAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTAT-TGATCAGTGATAAGTGACA
*
97280903 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACAC---TT-ATC--TGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATTGATCAGTGATAAGTGACA
* *
97280954 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTAT-TGATCAGTGATAAGTGA
97281010 TAAATGTGAT
Statistics
Matches: 93, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
51 44 0.47
53 3 0.03
54 2 0.02
55 2 0.02
56 3 0.03
58 39 0.42
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (57 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATTGATCAGTGATAAGTGACA
Found at i:97281010 original size:51 final size:51
Alignment explanation
Indices: 97280891--97281012 Score: 226
Period size: 51 Copynumber: 2.4 Consensus size: 51
97280881 ATGTGATCAG
* *
97280891 TGATAAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
1 TGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
97280942 TGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
1 TGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
97280993 TGATCAGTGACAAGTGATAA
1 TGATCAGTGACAAGTGATAA
97281013 ATGTGATCAG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.30
Consensus pattern (51 bp):
TGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATC
Found at i:97287619 original size:58 final size:58
Alignment explanation
Indices: 97287529--97287642 Score: 183
Period size: 58 Copynumber: 2.0 Consensus size: 58
97287519 ACTTCTGATC
* *
97287529 AGTGACAAGTGATAAGTAGTAGCCTCAGCTACACTTATGTGATCAGTGATAAGTGACA
1 AGTGACAAGTGATAAGTAGTAGCCTCAGCTACACTTATCTGATCAGTGACAAGTGACA
* * *
97287587 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGA
1 AGTGACAAGTGATAAGTAGTAGCCTCAGCTACACTTATCTGATCAGTGACAAGTGA
97287643 TATATGTGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (58 bp):
AGTGACAAGTGATAAGTAGTAGCCTCAGCTACACTTATCTGATCAGTGACAAGTGACA
Found at i:97292016 original size:25 final size:24
Alignment explanation
Indices: 97291952--97292058 Score: 74
Period size: 25 Copynumber: 4.4 Consensus size: 24
97291942 TCGCTTGAAC
* * *
97291952 CTTCCCGATATTGGCTCGT-GTGAT
1 CTTCCCGTTAATGGCTCGTAG-GAG
* * *
97291976 CTTCCCATTAATGGCTCTTCGGAG
1 CTTCCCGTTAATGGCTCGTAGGAG
* *
97292000 TTTCCCGTTACATGGCTCGTATGAG
1 CTTCCCGTTA-ATGGCTCGTAGGAG
* *
97292025 CTTCCCGTTATATGGCTAAG-AAGAG
1 CTTCCCGTTA-ATGGCT-CGTAGGAG
97292050 CTTCCCGTT
1 CTTCCCGTT
97292059 TACATGTTTG
Statistics
Matches: 66, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
24 25 0.38
25 40 0.61
26 1 0.02
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (24 bp):
CTTCCCGTTAATGGCTCGTAGGAG
Found at i:97302651 original size:46 final size:45
Alignment explanation
Indices: 97302547--97302764 Score: 199
Period size: 46 Copynumber: 4.8 Consensus size: 45
97302537 AGATTTGTGT
* * * *
97302547 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACATTGAGAAGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA--CAGATGAGA
* *
97302595 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACAGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGA
* * **
97302641 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGA
* * * * *
97302687 GCCAGTGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GA
* *
97302731 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC
97302765 ACGGTTACAT
Statistics
Matches: 144, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
43 1 0.01
44 33 0.23
45 2 0.01
46 79 0.55
47 18 0.12
48 11 0.08
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGA
Found at i:97302700 original size:92 final size:90
Alignment explanation
Indices: 97302547--97302758 Score: 237
Period size: 92 Copynumber: 2.3 Consensus size: 90
97302537 AGATTTGTGT
* * *
97302547 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAAGAGGGCTAGTGTAAGACATGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATCGAGAAGAGAGCCAGTGTAAGACATGT
97302612 CTAGGACATGCATCAGCCAC-AGTATGAGA
64 CTAGGACATGCATCAGCCACGAG-AT--GA
* * * ** *
97302641 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTAGCCAGTGTCAGACATGTCT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGAAGAGAGCCAGTGTAAGACATGTCT
* * * * *
97302706 GGGACATGCGTCGGCTACGAGATGT
66 AGGACATGCATCAGCCACGAGATGA
*
97302731 GCTAGTGTAAGACATGTCTGGGACATGC
1 GCCAGTGTAAGACATGTCTGGGACATGC
97302759 GTCAGCACGG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
90 28 0.27
92 46 0.45
93 16 0.16
94 12 0.12
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.22
Consensus pattern (90 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGAAGAGAGCCAGTGTAAGACATGTCT
AGGACATGCATCAGCCACGAGATGA
Found at i:97312701 original size:16 final size:16
Alignment explanation
Indices: 97312682--97312713 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
97312672 AATTATTTTA
97312682 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
97312698 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
97312714 ACTCCATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:97312998 original size:50 final size:50
Alignment explanation
Indices: 97312923--97313190 Score: 295
Period size: 50 Copynumber: 5.3 Consensus size: 50
97312913 CTGGTAAGCA
**
97312923 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * *
97312973 TAGTAGCCCGCACTTAGTACTACACATATGACCTATCAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * * *
97313023 TAGTAGCTTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * ** * * ** *
97313073 TAGTAGCTTGCACTTAGTACCACACACGTGATCGAAGTTAA-CGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACG
**
97313124 TAGTAGCCTGCACTTAGTACTACACATGAAACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
*
97313174 TAGTAGCCTACACTTAG
1 TAGTAGCCTGCACTTAG
97313191 GGTCTGTTTG
Statistics
Matches: 179, Mismatches: 36, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 3 0.02
50 142 0.79
51 33 0.18
52 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
Found at i:97316677 original size:34 final size:35
Alignment explanation
Indices: 97316621--97316687 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
97316611 CAAACACCAG
* *
97316621 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
97316656 AAAACATTTTTCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
97316688 CATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:97316679 original size:14 final size:14
Alignment explanation
Indices: 97316656--97316695 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
97316646 ACAGAAAAGT
*
97316656 AAAACATTTTTCAG
1 AAAACATTTTACAG
* *
97316670 AAATCATTTTACGG
1 AAAACATTTTACAG
97316684 AAAACATTTTAC
1 AAAACATTTTAC
97316696 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.35
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:97316949 original size:101 final size:101
Alignment explanation
Indices: 97316852--97317033 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
97316842 CTGGTACATG
** * * * *
97316852 TAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCTGATACACGTAGTAGCCTACACTT
* *
97316917 AGTATTACACACGTGATCGAAGTTAACGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTAACGGGTACACA
* *
97316953 TAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCTGATACACGTAGTAGCCTACACTT
97317018 AGTACTACACACGTGA
66 AGTACTACACACGTGA
97317034 CTTAACCATT
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCTGATACACGTAGTAGCCTACACTT
AGTACTACACACGTGATCGAAGTTAACGGGTACACA
Found at i:97316987 original size:151 final size:151
Alignment explanation
Indices: 97316713--97317079 Score: 626
Period size: 151 Copynumber: 2.4 Consensus size: 151
97316703 CAAACAGACC
* *
97316713 CTTAGTACTATACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
1 CTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
* *
97316778 GTGATCAAAGTTAACGGGTATGCATAATAGCCTGCACTTAGTACTACACATGCGACCTATCAATC
66 GTGATCAAAGTTAACGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCAACCTATCAATC
* *
97316843 TGGTACATGTAGTAGCCTGCA
131 TGGTACACGTAGTAGCCTACA
*
97316864 CTTAGTACTACACATGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
1 CTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
* *
97316929 GTGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATC
66 GTGATCAAAGTTAACGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCAACCTATCAATC
97316994 TGGTACACGTAGTAGCCTACA
131 TGGTACACGTAGTAGCCTACA
* * *
97317015 CTTAGTACTACACACGTGACTTAACCATTTGATACATGTAGTAGCCTGAACTTAGTACTACACAC
1 CTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
97317080 ATGACTCACA
Statistics
Matches: 203, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
151 203 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (151 bp):
CTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
GTGATCAAAGTTAACGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCAACCTATCAATC
TGGTACACGTAGTAGCCTACA
Found at i:97317079 original size:50 final size:50
Alignment explanation
Indices: 97316713--97317085 Score: 318
Period size: 50 Copynumber: 7.4 Consensus size: 50
97316703 CAAACAGACC
*
97316713 CTTAGTACTATACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
1 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
* * ** * * * ** * *
97316763 CTTAGTATTACACACGTGA-TCAAAGTTAACGGGTATGCATAATAGCCTGCA
1 CTTAGTACTACACACGTGACT-TAA-CCATCTGATACACGTAGTAGCCTGCA
* * * * * * *
97316814 CTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCA
1 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
* *
97316864 CTTAGTACTACACATGTGACTTAACCATTTGATACACGTAGTAGCCTGCA
1 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
* * ** * * * * *
97316914 CTTAGTATTACACACGTGA-TCGAAGTTAACGGGTACGCATAGTAGCCTGCA
1 CTTAGTACTACACACGTGACT-TAA-CCATCTGATACACGTAGTAGCCTGCA
* ** * * * * *
97316965 CTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGCCTACA
1 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
* * *
97317015 CTTAGTACTACACACGTGACTTAACCATTTGATACATGTAGTAGCCTGAA
1 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
*
97317065 CTTAGTACTACACACATGACT
1 CTTAGTACTACACACGTGACT
97317086 CACAATGGAT
Statistics
Matches: 246, Mismatches: 71, Indels: 12
0.75 0.22 0.04
Matches are distributed among these distances:
49 2 0.01
50 176 0.72
51 68 0.28
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (50 bp):
CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
Found at i:97319867 original size:22 final size:22
Alignment explanation
Indices: 97319832--97319880 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
97319822 ATATCCAAAC
97319832 AATAATAACAAAAT-AGTAGCAA
1 AATAATAACAAAATGA-TAGCAA
* * *
97319854 TATAATAGCGAAATGATAGCAA
1 AATAATAACAAAATGATAGCAA
97319876 AATAA
1 AATAA
97319881 CAATATAACA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.59, C:0.08, G:0.12, T:0.20
Consensus pattern (22 bp):
AATAATAACAAAATGATAGCAA
Found at i:97342435 original size:17 final size:18
Alignment explanation
Indices: 97342415--97342448 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97342405 TTCTTTTTCT
97342415 TTGTGTT-TTTTTTTCAA
1 TTGTGTTATTTTTTTCAA
*
97342432 TTGTTTTATTTTTTTCA
1 TTGTGTTATTTTTTTCA
97342449 CTTTACCCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.06, G:0.09, T:0.74
Consensus pattern (18 bp):
TTGTGTTATTTTTTTCAA
Found at i:97347381 original size:23 final size:23
Alignment explanation
Indices: 97347353--97347446 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
97347343 ATGTGTGTAT
* *
97347353 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
97347376 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
97347399 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
97347422 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
97347445 CT
1 CT
97347447 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:97350237 original size:23 final size:23
Alignment explanation
Indices: 97350209--97350302 Score: 143
Period size: 23 Copynumber: 4.1 Consensus size: 23
97350199 ATGTGTGTAT
*
97350209 CTTTTCATATTCAAGTCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
97350232 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
97350255 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
97350278 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
97350301 CT
1 CT
97350303 CTTCTAACTT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 62 1.00
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.49
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:97351782 original size:19 final size:20
Alignment explanation
Indices: 97351746--97351786 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
97351736 TTTAAAAAGA
*
97351746 AAAAAATAAGTAATTAACAT
1 AAAAAATAAGTAAATAACAT
*
97351766 AAAAAA-AATTAAATAACAT
1 AAAAAATAAGTAAATAACAT
97351785 AA
1 AA
97351787 GAAACTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (20 bp):
AAAAAATAAGTAAATAACAT
Found at i:97352319 original size:23 final size:21
Alignment explanation
Indices: 97352271--97352337 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
97352261 ACATTAAAAG
97352271 TATAAAAATTAGAAATAAATA
1 TATAAAAATTAGAAATAAATA
*
97352292 CATAAAAATATCAGAAA-AATATA
1 TATAAAAAT-T-AGAAATAA-ATA
** *
97352315 TATAAATTTTAGAAAAAAATA
1 TATAAAAATTAGAAATAAATA
97352336 TA
1 TA
97352338 AATTATTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 18 0.47
22 6 0.16
23 14 0.37
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.28
Consensus pattern (21 bp):
TATAAAAATTAGAAATAAATA
Found at i:97352346 original size:21 final size:21
Alignment explanation
Indices: 97352304--97352341 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 21
97352294 TAAAAATATC
97352304 AGAAAAATATATATAAATTTT
1 AGAAAAATATATATAAATTTT
97352325 AGAAAAA-A-ATATAAATT
1 AGAAAAATATATATAAATT
97352342 ATTTAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.53
20 1 0.06
21 7 0.41
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (21 bp):
AGAAAAATATATATAAATTTT
Found at i:97352661 original size:19 final size:20
Alignment explanation
Indices: 97352626--97352677 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
97352616 TTTTAAACTT
**
97352626 TTTTAATATTATAATTTTCTA
1 TTTTAAT-TTATAATTTAATA
97352647 TTTTAATTT-TAATTTAATA
1 TTTTAATTTATAATTTAATA
97352666 TTTTAA-TTATAA
1 TTTTAATTTATAA
97352678 ATAAACTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 2 0.07
19 17 0.61
20 2 0.07
21 7 0.25
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTAATTTATAATTTAATA
Found at i:97352922 original size:16 final size:16
Alignment explanation
Indices: 97352903--97352941 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
97352893 TATTTTCATT
97352903 TAATAATTTTTTTAAA
1 TAATAATTTTTTTAAA
*
97352919 TAAT-ATATTTTTAAA
1 TAATAATTTTTTTAAA
97352934 TAA-AATTT
1 TAATAATTT
97352942 CTAATTTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TAATAATTTTTTTAAA
Found at i:97364704 original size:40 final size:35
Alignment explanation
Indices: 97364630--97364722 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 35
97364620 CATGGCAAAG
*
97364630 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATAATGAGT
*
97364665 TGTGAAACGTAGGTATGGTATTATCAAATCTATAATGAGT
1 TGTGAAACGTAGGTATGG---TATC--ATCCATAATGAGT
**
97364705 TAAGAAACGTAGGTATGG
1 TGTGAAACGTAGGTATGG
97364723 CATTTCCCAT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
35 18 0.37
38 4 0.08
40 27 0.55
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATAATGAGT
Found at i:97370603 original size:21 final size:20
Alignment explanation
Indices: 97370558--97370605 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
97370548 CCCGAGCCTC
* *
97370558 AAACCTTAAACTTGAATCTT
1 AAACCTTAAACTTGAACCCT
97370578 AAACCTTAAACCTTGAACCCT
1 AAACCTTAAA-CTTGAACCCT
*
97370599 GAACCTT
1 AAACCTT
97370606 GAGGTTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.38, C:0.27, G:0.06, T:0.29
Consensus pattern (20 bp):
AAACCTTAAACTTGAACCCT
Found at i:97370725 original size:22 final size:23
Alignment explanation
Indices: 97370677--97370742 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 23
97370667 TGGAGTTACT
*
97370677 GTTTACGAGTTTAGGATTTAGGA
1 GTTTAAGAGTTTAGGATTTAGGA
* *
97370700 -TTTAAGAGTTTGGGA-TTATGA
1 GTTTAAGAGTTTAGGATTTAGGA
* *
97370721 GTTT-AGTGTTTGAGAATTTAGG
1 GTTTAAGAGTTT-AGGATTTAGG
97370743 TTTTGAGGTC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
21 11 0.33
22 18 0.55
23 4 0.12
ACGTcount: A:0.26, C:0.02, G:0.30, T:0.42
Consensus pattern (23 bp):
GTTTAAGAGTTTAGGATTTAGGA
Found at i:97373790 original size:22 final size:21
Alignment explanation
Indices: 97373765--97373805 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
97373755 TAAGAATTTT
* *
97373765 AGAGAGATTATGAGAGAAAACA
1 AGAGAAATT-TGAAAGAAAACA
97373787 AGAGAAATTTGAAAGAAAA
1 AGAGAAATTTGAAAGAAAA
97373806 ATGATAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.59, C:0.02, G:0.24, T:0.15
Consensus pattern (21 bp):
AGAGAAATTTGAAAGAAAACA
Done.