Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 30 of 311
Found at i:8609490 original size:45 final size:45
Alignment explanation
Indices: 8609315--8609491 Score: 193
Period size: 45 Copynumber: 3.9 Consensus size: 45
8609305 AGTTATGGTT
** *
8609315 GGTAAGCTCT-TTCGAGCTGAACAGTAAGCTC-TATTGAGATGAAAC
1 GGTAAGCTCTATT-GAGCTGAATGGTAAGCTCATA-TGAGCTGAAAC
8609360 GGTAAGCTCTATTGAGCTGAATGGTAAGCTTCA-ATGAGCTGAAAC
1 GGTAAGCTCTATTGAGCTGAATGGTAAGC-TCATATGAGCTGAAAC
*
8609405 AGTAAGCTCTATTGAGCTGAAATGGTAAGCTC-TATTGAGCT-AAAC
1 GGTAAGCTCTATTGAGCTG-AATGGTAAGCTCATA-TGAGCTGAAAC
* * * *
8609450 GGTAAGCTCCAATGAGCTGAAGTAGTAAGCTCATACGAGCTG
1 GGTAAGCTCTATTGAGCTGAA-TGGTAAGCTCATATGAGCTG
8609492 TATCAGTAAG
Statistics
Matches: 114, Mismatches: 9, Indels: 17
0.81 0.06 0.12
Matches are distributed among these distances:
44 2 0.02
45 89 0.78
46 23 0.20
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (45 bp):
GGTAAGCTCTATTGAGCTGAATGGTAAGCTCATATGAGCTGAAAC
Found at i:8609501 original size:68 final size:68
Alignment explanation
Indices: 8609328--8609504 Score: 207
Period size: 68 Copynumber: 2.6 Consensus size: 68
8609318 AAGCTCTTTC
* * ** * * *
8609328 GAGCTG-AACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATTGAGCTGAATGGTAAGCTTC
1 GAGCTGAAACAGTAAGCTCTATCGAGCTGAAATAGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
8609392 AAT
66 AAT
* *
8609395 GAGCTGAAACAGTAAGCTCTATTGAGCTGAAATGGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
1 GAGCTGAAACAGTAAGCTCTATCGAGCTGAAATAGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
8609460 AAT
66 AAT
** *
8609463 GAGCTGAAGTAGTAAGCTC-ATACGAGCTG-TATCAGTAAGCTC
1 GAGCTGAAACAGTAAGCTCTAT-CGAGCTGAAAT-AGTAAGCTC
8609505 ATACGAGCTG
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
67 10 0.10
68 87 0.90
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (68 bp):
GAGCTGAAACAGTAAGCTCTATCGAGCTGAAATAGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
AAT
Found at i:8612356 original size:17 final size:17
Alignment explanation
Indices: 8612320--8612359 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
8612310 TTAAAAAAAA
* *
8612320 TAAAAACATAATGCTTT
1 TAAAAACATAATGATAT
*
8612337 TAAAAACATAATTATAT
1 TAAAAACATAATGATAT
8612354 TAAAAA
1 TAAAAA
8612360 TGTTATTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (17 bp):
TAAAAACATAATGATAT
Found at i:8612633 original size:16 final size:16
Alignment explanation
Indices: 8612612--8612662 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
8612602 TGAATTATTG
8612612 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
* * **
8612628 ATTACAGCCCTATTAT
1 ATTACAACTCTATTCC
*
8612644 ATTACAACTGTATTCC
1 ATTACAACTCTATTCC
8612660 ATT
1 ATT
8612663 CTAACGAACC
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:8615725 original size:7 final size:7
Alignment explanation
Indices: 8615705--8615780 Score: 116
Period size: 7 Copynumber: 10.9 Consensus size: 7
8615695 GGTTTGTGGT
8615705 GTGATTG
1 GTGATTG
* *
8615712 CTCATTG
1 GTGATTG
*
8615719 ATGATTG
1 GTGATTG
8615726 GTGATTG
1 GTGATTG
8615733 GTGATTG
1 GTGATTG
8615740 GTGATTG
1 GTGATTG
*
8615747 GTAATTG
1 GTGATTG
8615754 GTGATTG
1 GTGATTG
8615761 GTGATTG
1 GTGATTG
8615768 GTGATTG
1 GTGATTG
8615775 GTGATT
1 GTGATT
8615781 AGTAAAAAGA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 62 1.00
ACGTcount: A:0.17, C:0.03, G:0.37, T:0.43
Consensus pattern (7 bp):
GTGATTG
Found at i:8621148 original size:34 final size:34
Alignment explanation
Indices: 8621105--8621173 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
8621095 AATAATCAGC
*
8621105 AAAGAATACTTCAGTGTCAAGAAACTAAGGTAGA
1 AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
8621139 AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
1 AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
8621173 A
1 A
8621174 TACTTGCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (34 bp):
AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
Found at i:8625531 original size:149 final size:149
Alignment explanation
Indices: 8625261--8625564 Score: 572
Period size: 149 Copynumber: 2.0 Consensus size: 149
8625251 ATCAACTAAA
*
8625261 AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAATTTTCTTC
1 AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAACTTTCTTC
8625326 GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
66 GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
8625391 TACTTTGATAAATCAGAAC
131 TACTTTGATAAATCAGAAC
* * *
8625410 AACTAAATACGTACACCTTTTAAGCTTGTTTCTTATTCATGGCCGTAACATCATAAACTTTCTTT
1 AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAACTTTCTTC
8625475 GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
66 GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
8625540 TACTTTGATAAATCAGAAC
131 TACTTTGATAAATCAGAAC
8625559 AACTAA
1 AACTAA
8625565 TGAAGGTACA
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (149 bp):
AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAACTTTCTTC
GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
TACTTTGATAAATCAGAAC
Found at i:8627363 original size:77 final size:77
Alignment explanation
Indices: 8627273--8627501 Score: 287
Period size: 79 Copynumber: 2.9 Consensus size: 77
8627263 CAATTCTCCA
*
8627273 CATGGTATCAAATGTTTTCGGTTCTTTCCTAAGAAGTGTTTTTTTTCTGGTCGAATTCTTGCTTC
1 CATGGTATCAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTTTTTTCTGGTCGAATTCTTGCTTC
*
8627338 TCATGTTTATTC
66 TCATGTTCATTC
* * * *
8627350 TATGGTATTAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTTCTTTTCCTGGTTGAAATCTTGCT
1 CATGGTATCAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTT-TTTT-CTGGTCGAATTCTTGCT
*
8627415 TCTCTTGTTCATTC
64 TCTCATGTTCATTC
* * * *
8627429 CATGGTATCAGATGTTTTTGGTTCCTTACTAAGAAGAGTTTTTTTTTTTTTCTTGGTCGAATTCT
1 CATGGTATCAAATGTTTTTGGTTCTTTCCTAAG-A-AG---TGTTTTTTTTC-TGGTCGAATTCT
8627494 TGCTTCTC
60 TGCTTCTC
8627502 CTATTCTATT
Statistics
Matches: 129, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
77 39 0.30
78 4 0.03
79 55 0.43
80 1 0.01
81 2 0.02
82 1 0.01
83 22 0.17
84 5 0.04
ACGTcount: A:0.17, C:0.16, G:0.17, T:0.51
Consensus pattern (77 bp):
CATGGTATCAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTTTTTTCTGGTCGAATTCTTGCTTC
TCATGTTCATTC
Found at i:8629238 original size:25 final size:24
Alignment explanation
Indices: 8629208--8629257 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
8629198 AAATAAAAAA
* *
8629208 ATTTTAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
8629234 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
8629258 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:8636060 original size:19 final size:19
Alignment explanation
Indices: 8636036--8636078 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
8636026 TTTTAAATTC
8636036 ATTTAGGTAGATAAATCTT
1 ATTTAGGTAGATAAATCTT
* *
8636055 ATTTAGGTAGATAAGTTTT
1 ATTTAGGTAGATAAATCTT
8636074 ATTTA
1 ATTTA
8636079 TATTCTAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (19 bp):
ATTTAGGTAGATAAATCTT
Found at i:8636152 original size:42 final size:42
Alignment explanation
Indices: 8636093--8636183 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
8636083 CTAGGAATAT
*
8636093 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
1 TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
* *
8636135 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
8636177 TTTTCTT
1 TTTTCTT
8636184 AATTAGGATT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (42 bp):
TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
Found at i:8640834 original size:42 final size:42
Alignment explanation
Indices: 8640775--8640863 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
8640765 CTAGGAATAT
* *
8640775 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGAGAACTA
*
8640817 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGAGAACTA
8640859 TTTTC
1 TTTTC
8640864 GCAATTAGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.52
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGAGAACTA
Found at i:8646724 original size:2 final size:2
Alignment explanation
Indices: 8646717--8646746 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8646707 TGTTTCCATA
8646717 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8646747 AGAAATAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8651662 original size:24 final size:24
Alignment explanation
Indices: 8651630--8651679 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
8651620 AGAGGAACAG
8651630 TCGAGTACCAAGTAGTTTGAAAGT
1 TCGAGTACCAAGTAGTTTGAAAGT
8651654 TCGAGTACCAAGTAGTTTGAAAGT
1 TCGAGTACCAAGTAGTTTGAAAGT
8651678 TC
1 TC
8651680 TTGCCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (24 bp):
TCGAGTACCAAGTAGTTTGAAAGT
Found at i:8656060 original size:21 final size:21
Alignment explanation
Indices: 8656022--8656063 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8656012 TTCTTCCGTT
*
8656022 AAATTTATTTTTTATTTTTTA
1 AAATTTATTTTCTATTTTTTA
*
8656043 AAATTTATTTTCCTTTTTTTT
1 AAATTTATTTT-CTATTTTTT
8656064 CCTCTCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (21 bp):
AAATTTATTTTCTATTTTTTA
Found at i:8657294 original size:30 final size:30
Alignment explanation
Indices: 8657258--8657315 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
8657248 TCGAGAAAGA
*
8657258 TCTTAAATATTAATATTGATTCTAAGTTAG
1 TCTTAAATATTAATATTGATACTAAGTTAG
8657288 TCTTAAATATTAATATTGATACTAAGTT
1 TCTTAAATATTAATATTGATACTAAGTT
8657316 TAATTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.47
Consensus pattern (30 bp):
TCTTAAATATTAATATTGATACTAAGTTAG
Found at i:8659218 original size:21 final size:20
Alignment explanation
Indices: 8659190--8659228 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8659180 CAAACCATGT
8659190 ATCAAATTTCAAGTATATGA
1 ATCAAATTTCAAGTATATGA
*
8659210 ATCATAATTTCAATTATAT
1 ATCA-AATTTCAAGTATAT
8659229 TTTCATGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (20 bp):
ATCAAATTTCAAGTATATGA
Found at i:8660834 original size:18 final size:17
Alignment explanation
Indices: 8660811--8660851 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
8660801 ATTTTACCCA
8660811 AAAATTATTTAAAACTAT
1 AAAATTATTT-AAACTAT
**
8660829 AAAATTATTTTTACTAT
1 AAAATTATTTAAACTAT
8660846 AAAATT
1 AAAATT
8660852 TTTTTTCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATTATTTAAACTAT
Found at i:8660861 original size:16 final size:16
Alignment explanation
Indices: 8660824--8660871 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 16
8660814 ATTATTTAAA
8660824 ACTATAAAATTATTTTT
1 ACTATAAAATT-TTTTT
8660841 ACTATAAAATTTTTTT
1 ACTATAAAATTTTTTT
*
8660857 TCTATAAATATTTTT
1 ACTATAAA-ATTTTT
8660872 ATTTTTCGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 12 0.41
17 17 0.59
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (16 bp):
ACTATAAAATTTTTTT
Found at i:8662356 original size:34 final size:34
Alignment explanation
Indices: 8662283--8662361 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
8662273 GGACAAATCC
* ***
8662283 GTTATAAGCATATTAATTGTTGTTGTATCGAACT
1 GTTATAAGCATATTAATCGTTACCGTATCGAACT
* * *
8662317 ATTATAAGCATATTAATCGTTACCGTATTGATCT
1 GTTATAAGCATATTAATCGTTACCGTATCGAACT
8662351 GTTATAAGCAT
1 GTTATAAGCAT
8662362 GTCATACTGC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (34 bp):
GTTATAAGCATATTAATCGTTACCGTATCGAACT
Found at i:8665049 original size:19 final size:19
Alignment explanation
Indices: 8665025--8665090 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 19
8665015 CTTGTGATGG
8665025 AGCTCACACTGAGCTTCAT
1 AGCTCACACTGAGCTTCAT
* * *
8665044 AGCTCACTCT--CCTTGTGAT
1 AGCTCACACTGAGC-T-TCAT
8665063 GGAGCTCACACTGAGCTTCAT
1 --AGCTCACACTGAGCTTCAT
8665084 AGCTCAC
1 AGCTCAC
8665091 TCTCCTTTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
17 1 0.03
18 1 0.03
19 19 0.54
21 12 0.34
22 1 0.03
23 1 0.03
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (19 bp):
AGCTCACACTGAGCTTCAT
Found at i:8665068 original size:40 final size:40
Alignment explanation
Indices: 8665013--8665097 Score: 170
Period size: 40 Copynumber: 2.1 Consensus size: 40
8665003 TGCATTGATT
8665013 TCCTTGTGATGGAGCTCACACTGAGCTTCATAGCTCACTC
1 TCCTTGTGATGGAGCTCACACTGAGCTTCATAGCTCACTC
8665053 TCCTTGTGATGGAGCTCACACTGAGCTTCATAGCTCACTC
1 TCCTTGTGATGGAGCTCACACTGAGCTTCATAGCTCACTC
8665093 TCCTT
1 TCCTT
8665098 TTATTTTCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.32
Consensus pattern (40 bp):
TCCTTGTGATGGAGCTCACACTGAGCTTCATAGCTCACTC
Found at i:8665762 original size:11 final size:11
Alignment explanation
Indices: 8665746--8665788 Score: 59
Period size: 11 Copynumber: 3.7 Consensus size: 11
8665736 TGAAATCAAT
8665746 TAATTCAACTA
1 TAATTCAACTA
*
8665757 TAATTCAATCAA
1 TAATTCAA-CTA
8665769 TTAATTCAACTA
1 -TAATTCAACTA
8665781 TAATTCAA
1 TAATTCAA
8665789 GAGATTTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 16 0.57
12 4 0.14
13 8 0.29
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (11 bp):
TAATTCAACTA
Found at i:8665769 original size:24 final size:24
Alignment explanation
Indices: 8665739--8665788 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
8665729 TAGTGATTGA
8665739 AATCAATTAATTCAACTATAATTC
1 AATCAATTAATTCAACTATAATTC
8665763 AATCAATTAATTCAACTATAATTC
1 AATCAATTAATTCAACTATAATTC
8665787 AA
1 AA
8665789 GAGATTTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (24 bp):
AATCAATTAATTCAACTATAATTC
Found at i:8666012 original size:19 final size:20
Alignment explanation
Indices: 8665967--8666015 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
8665957 TATATTACTC
*
8665967 TAATAAAATAGTAAAATATT
1 TAATAATATAGTAAAATATT
8665987 TAATAATATAGT-AAAT-TT
1 TAATAATATAGTAAAATATT
8666005 TAATTAATATA
1 TAA-TAATATA
8666016 TAAGCTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 5 0.19
19 11 0.41
20 11 0.41
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (20 bp):
TAATAATATAGTAAAATATT
Found at i:8666478 original size:2 final size:2
Alignment explanation
Indices: 8666471--8666533 Score: 90
Period size: 2 Copynumber: 31.5 Consensus size: 2
8666461 AAGCCCCTCA
* * * *
8666471 CT CT CT CT CT CC CT CC CT CT CT TT TT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8666513 CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT C
8666534 CCTCCCTCCC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:8666492 original size:12 final size:12
Alignment explanation
Indices: 8666475--8666549 Score: 78
Period size: 12 Copynumber: 6.2 Consensus size: 12
8666465 CCCTCACTCT
*
8666475 CTCTCTCCCTCC
1 CTCTCTCTCTCC
* * *
8666487 CTCTCTTTTTCT
1 CTCTCTCTCTCC
*
8666499 CTCTCTCTCTCT
1 CTCTCTCTCTCC
*
8666511 CTCTCTCTCTCT
1 CTCTCTCTCTCC
8666523 CTCTCTCTCTCC
1 CTCTCTCTCTCC
* *
8666535 CTCCCTCCCTCC
1 CTCTCTCTCTCC
8666547 CTC
1 CTC
8666550 CCTCCCTCAC
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 54 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (12 bp):
CTCTCTCTCTCC
Found at i:8666538 original size:4 final size:4
Alignment explanation
Indices: 8666531--8666557 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8666521 CTCTCTCTCT
8666531 CTCC CTCC CTCC CTCC CTCC CTCC CTC
1 CTCC CTCC CTCC CTCC CTCC CTCC CTC
8666558 ACACACACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.74, G:0.00, T:0.26
Consensus pattern (4 bp):
CTCC
Found at i:8666564 original size:2 final size:2
Alignment explanation
Indices: 8666557--8666585 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8666547 CTCCCTCCCT
8666557 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
8666586 TCTCTCTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:8666590 original size:2 final size:2
Alignment explanation
Indices: 8666585--8666632 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
8666575 CACACACACA
* *
8666585 CT CT CT CT CT CT CT CT CT GT CT CT CT CT GT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8666627 CT CT CT
1 CT CT CT
8666633 TTTTCAGTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.46, G:0.04, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8669273 original size:41 final size:41
Alignment explanation
Indices: 8669223--8669480 Score: 408
Period size: 41 Copynumber: 6.3 Consensus size: 41
8669213 AATTCATCAT
* *
8669223 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8669264 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8669305 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8669346 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8669387 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
8669428 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
8669469 ATTCATATCACC
1 ATTCAGATCACC
8669481 AATTCCAAAC
Statistics
Matches: 197, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 197 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:8669366 original size:82 final size:82
Alignment explanation
Indices: 8669229--8669480 Score: 495
Period size: 82 Copynumber: 3.1 Consensus size: 82
8669219 TCATATTCGG
8669229 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
8669294 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
8669311 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
8669376 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
*
8669393 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
8669458 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
8669475 ATCACC
1 ATCACC
8669481 AATTCCAAAC
Statistics
Matches: 169, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 169 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (82 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
TTTATAACCTGATTCAT
Found at i:8669728 original size:18 final size:17
Alignment explanation
Indices: 8669701--8669751 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
8669691 CCACACATAT
8669701 ATATATATATATACACAC
1 ATATA-ATATATACACAC
* *
8669719 ATATACATATATTCGCAC
1 ATATA-ATATATACACAC
*
8669737 AT-TAATATAAACACA
1 ATATAATATATACACA
8669752 ACCATAACAT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
16 8 0.30
17 2 0.07
18 17 0.63
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.31
Consensus pattern (17 bp):
ATATAATATATACACAC
Found at i:8676982 original size:41 final size:41
Alignment explanation
Indices: 8676932--8677189 Score: 408
Period size: 41 Copynumber: 6.3 Consensus size: 41
8676922 AATTCATCAT
* *
8676932 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8676973 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8677014 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8677055 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
8677096 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
8677137 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
8677178 ATTCATATCACC
1 ATTCAGATCACC
8677190 AATTCCAAAC
Statistics
Matches: 197, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 197 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:8677075 original size:82 final size:82
Alignment explanation
Indices: 8676938--8677189 Score: 495
Period size: 82 Copynumber: 3.1 Consensus size: 82
8676928 TCATATTCGG
8676938 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
8677003 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
8677020 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
8677085 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
*
8677102 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
8677167 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
8677184 ATCACC
1 ATCACC
8677190 AATTCCAAAC
Statistics
Matches: 169, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 169 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (82 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
TTTATAACCTGATTCAT
Found at i:8677430 original size:19 final size:19
Alignment explanation
Indices: 8677402--8677439 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8677392 TGTTCGATCC
* *
8677402 ACACATATATATATATATT
1 ACACACATATACATATATT
8677421 ACACACATATACATATATT
1 ACACACATATACATATATT
8677440 CGCACATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (19 bp):
ACACACATATACATATATT
Found at i:8679041 original size:10 final size:10
Alignment explanation
Indices: 8679026--8679071 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
8679016 ATTCTAAAAG
8679026 ATAAATACAA-
1 ATAAATA-AAT
8679036 ATAAATAAAT
1 ATAAATAAAT
* *
8679046 ATAATTAAAG
1 ATAAATAAAT
8679056 ATAAATAAAT
1 ATAAATAAAT
8679066 ATAAAT
1 ATAAAT
8679072 GCTAAAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
9 2 0.06
10 29 0.94
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (10 bp):
ATAAATAAAT
Found at i:8679049 original size:20 final size:20
Alignment explanation
Indices: 8679026--8679071 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
8679016 ATTCTAAAAG
8679026 ATAAATACAA-ATAAATAAAT
1 ATAAATA-AAGATAAATAAAT
*
8679046 ATAATTAAAGATAAATAAAT
1 ATAAATAAAGATAAATAAAT
8679066 ATAAAT
1 ATAAAT
8679072 GCTAAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (20 bp):
ATAAATAAAGATAAATAAAT
Found at i:8680071 original size:76 final size:74
Alignment explanation
Indices: 8679945--8680104 Score: 230
Period size: 76 Copynumber: 2.1 Consensus size: 74
8679935 ATCAGAAACA
* * * * *
8679945 TGGTTTCGAAGCCACCAAATTCGGTGAGTAAGTTTGTAAATATTATTATTAGTTGTAACAGCCCT
1 TGGTTTCGAAGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTCGTAACAGCCCT
8680010 ATTTTTTTCAG
66 A--TTTTTCAG
* *
8680021 TGGTTTCGAGGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTCGTAACAGTCCT
1 TGGTTTCGAAGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTCGTAACAGCCCT
8680086 ATTTTTCAG
66 ATTTTTCAG
*
8680095 TGGTGTCGAA
1 TGGTTTCGAA
8680105 AACAGTAGTT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
74 16 0.21
76 59 0.79
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (74 bp):
TGGTTTCGAAGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTCGTAACAGCCCT
ATTTTTCAG
Found at i:8681575 original size:21 final size:21
Alignment explanation
Indices: 8681549--8681611 Score: 99
Period size: 21 Copynumber: 3.0 Consensus size: 21
8681539 TTGGGTGGAA
*
8681549 CAGCTCTTACAAGCTTCTGTT
1 CAGCTCTTACGAGCTTCTGTT
*
8681570 CAGCTCTTACGAGCTTTTGTT
1 CAGCTCTTACGAGCTTCTGTT
*
8681591 TAGCTCTTACGAGCTTCTGTT
1 CAGCTCTTACGAGCTTCTGTT
8681612 GGCGTATTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.16, C:0.25, G:0.17, T:0.41
Consensus pattern (21 bp):
CAGCTCTTACGAGCTTCTGTT
Found at i:8685640 original size:84 final size:81
Alignment explanation
Indices: 8685542--8685702 Score: 250
Period size: 81 Copynumber: 2.0 Consensus size: 81
8685532 TTGATGTCTC
***
8685542 AAATCTATACCAAAAAAGGGTGAGAGTTTTTTTTTTTTTTGAGTTCCAATGCAATGCCATAAAGA
1 AAATCTATACCAAAAAAGGGTGAGA---ACATTTTTTTTTGAGTTCCAATGCAATGCCATAAAGA
8685607 ACTACTCTTGATAATTTCT
63 ACTACTCTTGATAATTTCT
* *
8685626 AAATCTATATCAAAAAAGGGTGAGAACATTTTTTTTTGAGTTCTAATGCAATGCCATAAAGAACT
1 AAATCTATACCAAAAAAGGGTGAGAACATTTTTTTTTGAGTTCCAATGCAATGCCATAAAGAACT
8685691 ACTCTTGATAAT
66 ACTCTTGATAAT
8685703 GATGTTTGGA
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
81 48 0.67
84 24 0.33
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (81 bp):
AAATCTATACCAAAAAAGGGTGAGAACATTTTTTTTTGAGTTCCAATGCAATGCCATAAAGAACT
ACTCTTGATAATTTCT
Found at i:8685981 original size:17 final size:17
Alignment explanation
Indices: 8685956--8685988 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8685946 TTTAATTTCA
*
8685956 TGTTTTTATTTTTTTTG
1 TGTTATTATTTTTTTTG
8685973 TGTTATTATTTTTTTT
1 TGTTATTATTTTTTTT
8685989 AATTTGTCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.82
Consensus pattern (17 bp):
TGTTATTATTTTTTTTG
Found at i:8686063 original size:39 final size:39
Alignment explanation
Indices: 8686020--8686101 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
8686010 TGCTATAAAT
*
8686020 ATTTTTTTATTATGAAGTAGATGTCTATTAAAATAAGAA
1 ATTTTTTTATTATGAAGTAGATGCCTATTAAAATAAGAA
8686059 ATTTTTTTATTATGAAGTAGATGCCTATTAAAATAAGAA
1 ATTTTTTTATTATGAAGTAGATGCCTATTAAAATAAGAA
8686098 ATTT
1 ATTT
8686102 GATGTATCTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (39 bp):
ATTTTTTTATTATGAAGTAGATGCCTATTAAAATAAGAA
Found at i:8686254 original size:15 final size:13
Alignment explanation
Indices: 8686212--8686247 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
8686202 AAAATTCATA
8686212 TTTCTCTTTTCTT
1 TTTCTCTTTTCTT
*
8686225 TTCCTCTTGTTCTT
1 TTTCTCTT-TTCTT
8686239 TTTCTCTTT
1 TTTCTCTTT
8686248 ATTCTTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.00, C:0.25, G:0.03, T:0.72
Consensus pattern (13 bp):
TTTCTCTTTTCTT
Found at i:8692290 original size:25 final size:25
Alignment explanation
Indices: 8692258--8692308 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8692248 TTAAAATAAT
8692258 TGTGTGAAAAGAAGAGAAAGAAATC
1 TGTGTGAAAAGAAGAGAAAGAAATC
8692283 TGTGTGAAAAGAAGAGAAAGAAATC
1 TGTGTGAAAAGAAGAGAAAGAAATC
8692308 T
1 T
8692309 CACAAATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.51, C:0.04, G:0.27, T:0.18
Consensus pattern (25 bp):
TGTGTGAAAAGAAGAGAAAGAAATC
Found at i:8709234 original size:42 final size:42
Alignment explanation
Indices: 8709175--8709259 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
8709165 GAATGATTAC
8709175 AACCATAATCACATTTTCCCTCAAATCAAATTGTGAAGGCAT
1 AACCATAATCACATTTTCCCTCAAATCAAATTGTGAAGGCAT
8709217 AACCATAATCACATTTTCCCTCAAATCAAATTGTGAAGGCAT
1 AACCATAATCACATTTTCCCTCAAATCAAATTGTGAAGGCAT
8709259 A
1 A
8709260 CTTGTAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (42 bp):
AACCATAATCACATTTTCCCTCAAATCAAATTGTGAAGGCAT
Found at i:8727483 original size:22 final size:22
Alignment explanation
Indices: 8727444--8727511 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 22
8727434 ATATTGAAAT
* *
8727444 TAAATTATTTTTAAAAAATTAT-
1 TAAA-TATTATTATAAAATTATA
* * *
8727466 TTAATTTTAATTATAAAAATATA
1 TAAATATT-ATTATAAAATTATA
*
8727489 TAAATATTATTATAACATTATA
1 TAAATATTATTATAAAATTATA
8727511 T
1 T
8727512 TTTTTAAACA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
21 3 0.09
22 26 0.74
23 6 0.17
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (22 bp):
TAAATATTATTATAAAATTATA
Found at i:8727575 original size:22 final size:21
Alignment explanation
Indices: 8727548--8727633 Score: 77
Period size: 22 Copynumber: 3.9 Consensus size: 21
8727538 TTTTATTTTT
*
8727548 TTATATATTTTAATATGTAAAA
1 TTATATATATTAATAT-TAAAA
8727570 TTATATAAATATTAATA-TAAATA
1 TTATAT--ATATTAATATTAAA-A
* *
8727593 TTTTATTATGTTAATATTAAAA
1 TTATA-TATATTAATATTAAAA
8727615 TTATACT-TATTAATATTAA
1 TTATA-TATATTAATATTAA
8727634 TATAAAATTA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
21 11 0.21
22 24 0.45
23 9 0.17
24 9 0.17
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (21 bp):
TTATATATATTAATATTAAAA
Found at i:8727636 original size:43 final size:45
Alignment explanation
Indices: 8727546--8727636 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 45
8727536 TATTTTATTT
*
8727546 TTTTATATATTTTAATATGTAAAATTATATAAATATTAATATAAATA
1 TTTTATATATGTTAATATGTAAAATTATAT--ATATTAATATAAATA
*
8727593 TTTTAT-TATGTTAATAT-TAAAATTATACT-TATTAATATTAATA
1 TTTTATATATGTTAATATGTAAAATTATA-TATATTAATATAAATA
8727636 T
1 T
8727637 AAAATTATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
43 14 0.34
45 10 0.24
46 11 0.27
47 6 0.15
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (45 bp):
TTTTATATATGTTAATATGTAAAATTATATATATTAATATAAATA
Found at i:8731433 original size:48 final size:52
Alignment explanation
Indices: 8731363--8731461 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
8731353 AATAATTATT
8731363 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
8731411 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
8731462 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:8731443 original size:17 final size:17
Alignment explanation
Indices: 8731418--8731451 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8731408 ATAATTTTAA
*
8731418 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
8731435 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
8731452 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:8731468 original size:17 final size:16
Alignment explanation
Indices: 8731423--8731470 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
8731413 TTTAAATTTT
8731423 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
8731440 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
8731454 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
8731471 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:8731525 original size:54 final size:54
Alignment explanation
Indices: 8731467--8731645 Score: 137
Period size: 54 Copynumber: 3.1 Consensus size: 54
8731457 ATAATCATAT
8731467 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
* * * * * * * *
8731521 ATTATATATTTTAATTATATT-ATATTTAATAATAATTATGTTATTTTA-TATTTTACAGTATCA
1 ATTAT-GA-TTTGAGTAAATTCATA--TAAGAAT-ATTA-ATTA-TTAAGAATTTT--A-T-T-A
8731584 TA
54 -A
*
8731586 TATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 -ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
8731641 ATTAT
1 ATTAT
8731646 ATATTTTAAT
Statistics
Matches: 92, Mismatches: 17, Indels: 32
0.65 0.12 0.23
Matches are distributed among these distances:
54 10 0.11
55 5 0.05
56 10 0.11
57 7 0.08
58 5 0.05
59 9 0.10
60 6 0.07
61 9 0.10
62 5 0.05
63 7 0.08
64 10 0.11
65 4 0.04
66 5 0.05
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (54 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
Found at i:8731528 original size:61 final size:61
Alignment explanation
Indices: 8731463--8731650 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
8731453 AGTTATAATC
8731463 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * * * * *
8731524 ATATATTTTAATTAT-ATTATATTTA-ATAATAATTATGTTATT-TT-A-TATTTTA-CAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAA-TAT-TAATTATTAAGAATTTTATTA-AATT
*
8731583 ATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
8731644 ATATATT
1 ATATATT
8731651 TTAATTAAAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 30 0.32
60 14 0.15
61 38 0.40
62 6 0.06
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:8731542 original size:18 final size:17
Alignment explanation
Indices: 8731511--8731545 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8731501 ATTATTAAGA
8731511 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
8731528 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
8731546 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:8731584 original size:120 final size:120
Alignment explanation
Indices: 8731460--8731682 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
8731450 ATTAGTTATA
8731460 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
* *
8731525 TATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
*
8731580 ATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
8731645 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
8731683 TAAATATGAT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
Found at i:8731659 original size:18 final size:17
Alignment explanation
Indices: 8731631--8731665 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8731621 ATTATTAAGA
*
8731631 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8731648 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8731666 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8731677 original size:54 final size:54
Alignment explanation
Indices: 8731494--8731679 Score: 142
Period size: 54 Copynumber: 3.2 Consensus size: 54
8731484 TTCATATAAG
* *
8731494 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
* * * *
8731548 AATAATAATTATGT--TATTTTATATTTTACAGTATCATATATTATGGTTTGAGTAAATTCATAT
1 AATAATAATTAT-TAAGAATTT-TA--TTA-A--AT--TATA-TAT--TTTAATTAAATT-ATAT
**
8731611 AAG
53 -TT
* *
8731614 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
8731668 AATAATAATTAT
1 AATAATAATTAT
8731680 GTTTAAATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 32
0.67 0.11 0.22
Matches are distributed among these distances:
53 4 0.04
54 24 0.24
55 5 0.05
56 12 0.12
57 1 0.01
58 3 0.03
59 6 0.06
61 6 0.06
62 3 0.03
63 1 0.01
64 12 0.12
65 5 0.05
66 13 0.13
67 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (54 bp):
AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
Found at i:8731786 original size:144 final size:147
Alignment explanation
Indices: 8731619--8731890 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
8731609 ATAAGAATAT
*
8731619 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
8731684 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
8731746 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
8731763 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
8731828 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
8731891 CAATAATCAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 91 0.75
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:8731803 original size:18 final size:17
Alignment explanation
Indices: 8731775--8731809 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8731765 ATTATTAAGA
*
8731775 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8731792 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8731810 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8732020 original size:44 final size:45
Alignment explanation
Indices: 8731971--8732065 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
8731961 TTACACCTCT
* *
8731971 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
8732015 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
8732060 ATTACA
1 ATTACA
8732066 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:8732065 original size:16 final size:16
Alignment explanation
Indices: 8732044--8732076 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8732034 TTGATTTGCT
*
8732044 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
8732060 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
8732076 A
1 A
8732077 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:8732086 original size:21 final size:21
Alignment explanation
Indices: 8732057--8732099 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8732047 ACACCTCTAT
*
8732057 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
8732078 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
8732099 T
1 T
8732100 ACAGCGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:8734763 original size:55 final size:55
Alignment explanation
Indices: 8734699--8734815 Score: 216
Period size: 55 Copynumber: 2.1 Consensus size: 55
8734689 CTGACTTGGG
8734699 TCACACGGCCAACCACACGCCCGTGTGACCAGCCCGTGTGCCATTCGAAATGACC
1 TCACACGGCCAACCACACGCCCGTGTGACCAGCCCGTGTGCCATTCGAAATGACC
* *
8734754 TCACACGGCCAACCACACGCCCGTGTTACCAGCCCGTGTGCCATTCGAAATGGCC
1 TCACACGGCCAACCACACGCCCGTGTGACCAGCCCGTGTGCCATTCGAAATGACC
8734809 TCACACG
1 TCACACG
8734816 CCCGTGTGCC
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.23, C:0.40, G:0.21, T:0.15
Consensus pattern (55 bp):
TCACACGGCCAACCACACGCCCGTGTGACCAGCCCGTGTGCCATTCGAAATGACC
Found at i:8735725 original size:17 final size:17
Alignment explanation
Indices: 8735705--8735760 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
8735695 ATAATAATAT
8735705 ACAACTCATATTAATCC
1 ACAACTCATATTAATCC
** **
8735722 ACAAAC-CTATAACAATAT
1 AC-AACTC-ATATTAATCC
8735740 ACAACTCATATTAATCC
1 ACAACTCATATTAATCC
8735757 ACAA
1 ACAA
8735761 ACCTATCACA
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
17 16 0.57
18 12 0.43
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (17 bp):
ACAACTCATATTAATCC
Found at i:8735733 original size:35 final size:35
Alignment explanation
Indices: 8735694--8735766 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
8735684 AACAATTGAA
*
8735694 TATAATAATATACAACTCATATTAATCCACAAACC
1 TATAACAATATACAACTCATATTAATCCACAAACC
8735729 TATAACAATATACAACTCATATTAATCCACAAACC
1 TATAACAATATACAACTCATATTAATCCACAAACC
8735764 TAT
1 TAT
8735767 CACATGATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (35 bp):
TATAACAATATACAACTCATATTAATCCACAAACC
Found at i:8741106 original size:18 final size:17
Alignment explanation
Indices: 8741065--8741106 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8741055 AAAAGTTGAG
8741065 TTTT-AATAGCTAAAGA
1 TTTTAAATAGCTAAAGA
* *
8741081 TATTAAATAGCTATAGAA
1 TTTTAAATAGCTAAAG-A
8741099 TTTTAAAT
1 TTTTAAAT
8741107 TGGAGGTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 3 0.14
17 10 0.48
18 8 0.38
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (17 bp):
TTTTAAATAGCTAAAGA
Found at i:8742176 original size:25 final size:25
Alignment explanation
Indices: 8742103--8742169 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
8742093 GACACACCAC
*
8742103 AGCTCGTATGAGCTTCCCGTTATAT
1 AGCTCGTATGAGCTTCCCGTTATTT
* *
8742128 AGCTCGCATGAGTTTCCCGTTATTT
1 AGCTCGTATGAGCTTCCCGTTATTT
8742153 AGCTCGTATGAGCTTCC
1 AGCTCGTATGAGCTTCC
8742170 TGATATTCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (25 bp):
AGCTCGTATGAGCTTCCCGTTATTT
Found at i:8742415 original size:12 final size:12
Alignment explanation
Indices: 8742398--8742438 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
8742388 ATATGTGTTA
8742398 GATTTTATATGT
1 GATTTTATATGT
*
8742410 GATTTTCAT-T-A
1 GATTTT-ATATGT
8742421 GATTTTATATGT
1 GATTTTATATGT
8742433 GATTTT
1 GATTTT
8742439 CATGGCTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 2 0.08
11 7 0.29
12 13 0.54
13 2 0.08
ACGTcount: A:0.24, C:0.02, G:0.15, T:0.59
Consensus pattern (12 bp):
GATTTTATATGT
Found at i:8742425 original size:23 final size:23
Alignment explanation
Indices: 8742395--8742441 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
8742385 ACCATATGTG
8742395 TTAGATTTTATATGTGATTTTCA
1 TTAGATTTTATATGTGATTTTCA
8742418 TTAGATTTTATATGTGATTTTCA
1 TTAGATTTTATATGTGATTTTCA
8742441 T
1 T
8742442 GGCTAATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.57
Consensus pattern (23 bp):
TTAGATTTTATATGTGATTTTCA
Found at i:8750969 original size:25 final size:25
Alignment explanation
Indices: 8750935--8750985 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
8750925 TTCCTTATAA
**
8750935 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
8750960 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
8750985 A
1 A
8750986 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:8750984 original size:12 final size:12
Alignment explanation
Indices: 8750938--8750985 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
8750928 CTTATAAACT
8750938 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
8750950 TTCTATTAGGACT
1 TTAAATTAGGA-A
8750963 TTAAATTAGGAA
1 TTAAATTAGGAA
*
8750975 TTAGATTAGGA
1 TTAAATTAGGA
8750986 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:8755245 original size:25 final size:25
Alignment explanation
Indices: 8755211--8755261 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
8755201 TTCCTTATGA
* **
8755211 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGAAATTAGATTAGG
8755236 ACTTTAAATTAGAAATTAGATTAGG
1 ACTTTAAATTAGAAATTAGATTAGG
8755261 A
1 A
8755262 TTTTTCTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGAAATTAGATTAGG
Found at i:8771230 original size:7 final size:7
Alignment explanation
Indices: 8771214--8771273 Score: 68
Period size: 7 Copynumber: 8.6 Consensus size: 7
8771204 CTCGATCCTA
8771214 AATTCTC
1 AATTCTC
*
8771221 AATCCTC
1 AATTCTC
*
8771228 AATTTTC
1 AATTCTC
*
8771235 ATTTCTC
1 AATTCTC
*
8771242 AATTTTC
1 AATTCTC
8771249 AA-TCATC
1 AATTC-TC
8771256 AATTCTC
1 AATTCTC
8771263 AATTCTC
1 AATTCTC
8771270 AATT
1 AATT
8771274 ATTATTTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
6 1 0.02
7 40 0.93
8 2 0.05
ACGTcount: A:0.30, C:0.25, G:0.00, T:0.45
Consensus pattern (7 bp):
AATTCTC
Found at i:8771240 original size:21 final size:21
Alignment explanation
Indices: 8771214--8771275 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
8771204 CTCGATCCTA
* *
8771214 AATTCTCAATCCTCAATTTTC
1 AATTCTCAATTCTCAATTATC
* * *
8771235 ATTTCTCAATTTTCAATCATC
1 AATTCTCAATTCTCAATTATC
8771256 AATTCTCAATTCTCAATTAT
1 AATTCTCAATTCTCAATTAT
8771276 TATTTTTAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.00, T:0.45
Consensus pattern (21 bp):
AATTCTCAATTCTCAATTATC
Found at i:8775240 original size:21 final size:21
Alignment explanation
Indices: 8775161--8775256 Score: 111
Period size: 21 Copynumber: 4.5 Consensus size: 21
8775151 AGGCACTTTA
*
8775161 TGTGTCGTATTTCAGGTACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
*
8775184 TGTGTCGTAGCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
8775205 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
8775226 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
8775247 TGTGTCGTAT
1 TGTGTCGTAT
8775257 ACTGATCAAG
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
21 55 0.86
23 9 0.14
ACGTcount: A:0.14, C:0.22, G:0.28, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:8775241 original size:42 final size:42
Alignment explanation
Indices: 8775150--8775256 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 42
8775140 CTTTACTGAT
* * *
8775150 CAGGCACTTTATGTGTCGTATTTCAGGTACCTCGTGTGTCGTAG
1 CAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCGTAG
* **
8775194 CAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGTTT
1 CAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGTAG
* * *
8775236 TAGGCACTTTATGTGTCGTAT
1 CAGGCACCTCATGTGTCGTAT
8775257 ACTGATCAAG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 36 0.68
44 17 0.32
ACGTcount: A:0.15, C:0.22, G:0.27, T:0.36
Consensus pattern (42 bp):
CAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGTAG
Found at i:8780589 original size:20 final size:21
Alignment explanation
Indices: 8780551--8780590 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8780541 AAAAGAACAT
*
8780551 ATTATTATTATTAGGTTTTTA
1 ATTATTATTATTAAGTTTTTA
8780572 ATTA-TATTATTAA-TTTTTA
1 ATTATTATTATTAAGTTTTTA
8780591 TCATATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 8 0.44
21 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (21 bp):
ATTATTATTATTAAGTTTTTA
Found at i:8780596 original size:18 final size:20
Alignment explanation
Indices: 8780556--8780596 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8780546 AACATATTAT
* *
8780556 TATTATTAGGTTTTTAATTA
1 TATTATTAGATTTTTAATCA
8780576 TATTATTA-ATTTTT-ATCA
1 TATTATTAGATTTTTAATCA
8780594 TAT
1 TAT
8780597 AAAAACAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 6 0.32
19 5 0.26
20 8 0.42
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (20 bp):
TATTATTAGATTTTTAATCA
Found at i:8780685 original size:31 final size:31
Alignment explanation
Indices: 8780643--8780710 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
8780633 ATATGATTTT
**
8780643 ATTAAA-ATTAATGGATAATTAAAAACTAAA
1 ATTAAATATTAATAAATAATTAAAAACTAAA
*
8780673 ATTAAATATTAATAAATAATTAAAAATTAAA
1 ATTAAATATTAATAAATAATTAAAAACTAAA
8780704 A-TAAATA
1 ATTAAATA
8780711 GAAAAATATG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 12 0.35
31 22 0.65
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (31 bp):
ATTAAATATTAATAAATAATTAAAAACTAAA
Found at i:8782225 original size:41 final size:41
Alignment explanation
Indices: 8782180--8782267 Score: 131
Period size: 41 Copynumber: 2.1 Consensus size: 41
8782170 GAGATCGAGG
* * * *
8782180 TAGCTTCAGTTGTGTAATGCACTTAGTGTGCGAGATTATAA
1 TAGCTTCAGCTATGTAATGCACTTAGTATGCAAGATTATAA
*
8782221 TAGCTTCGGCTATGTAATGCACTTAGTATGCAAGATTATAA
1 TAGCTTCAGCTATGTAATGCACTTAGTATGCAAGATTATAA
8782262 TAGCTT
1 TAGCTT
8782268 TGGCTATGCT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (41 bp):
TAGCTTCAGCTATGTAATGCACTTAGTATGCAAGATTATAA
Found at i:8782273 original size:41 final size:41
Alignment explanation
Indices: 8782192--8782292 Score: 141
Period size: 41 Copynumber: 2.4 Consensus size: 41
8782182 GCTTCAGTTG
* *
8782192 TGTAATGCACTTAGTGTGCGAGATTATAATAGCTTCGGCTA
1 TGTAATGCACTTAGTATGCAAGATTATAATAGCTTCGGCTA
*
8782233 TGTAATGCACTTAGTATGCAAGATTATAATAGCTTTGGCTA
1 TGTAATGCACTTAGTATGCAAGATTATAATAGCTTCGGCTA
*
8782274 TGCT-TTGGCACTTAGTATG
1 TG-TAAT-GCACTTAGTATG
8782293 TGAGATATCT
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
41 41 0.76
42 13 0.24
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.37
Consensus pattern (41 bp):
TGTAATGCACTTAGTATGCAAGATTATAATAGCTTCGGCTA
Found at i:8784201 original size:19 final size:23
Alignment explanation
Indices: 8784179--8784227 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 23
8784169 AGTTAAGTTA
8784179 AATAAATAATA-TT-TT-GGTT-
1 AATAAATAATAGTTATTAGGTTG
*
8784198 AATAAAAAATAGTTATTAGGTTG
1 AATAAATAATAGTTATTAGGTTG
8784221 AATAAAT
1 AATAAAT
8784228 TATAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 10 0.42
20 2 0.08
21 2 0.08
22 4 0.17
23 6 0.25
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (23 bp):
AATAAATAATAGTTATTAGGTTG
Found at i:8789123 original size:13 final size:14
Alignment explanation
Indices: 8789105--8789133 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8789095 TAAAGACTTG
8789105 ATATG-ATTAACCA
1 ATATGAATTAACCA
8789118 ATATGAATTAACCA
1 ATATGAATTAACCA
8789132 AT
1 AT
8789134 GTCACCAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (14 bp):
ATATGAATTAACCA
Found at i:8801547 original size:28 final size:28
Alignment explanation
Indices: 8801515--8801568 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
8801505 CTAAAAAATT
* *
8801515 ATTAATAATATTATTTAAATTATAATAC
1 ATTAATAATAATATTTAAACTATAATAC
*
8801543 ATTAATATTAATATTTAAACTATAAT
1 ATTAATAATAATATTTAAACTATAAT
8801569 GAATTTTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (28 bp):
ATTAATAATAATATTTAAACTATAATAC
Found at i:8803791 original size:25 final size:23
Alignment explanation
Indices: 8803742--8803796 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
8803732 GGATCTAAAT
*
8803742 TTTATATATTTTTTAATACAGTA
1 TTTATATATTTTTTAATACAATA
**
8803765 TTTATATATTTTTTTCAATTTAATA
1 TTTATATA-TTTTTT-AATACAATA
8803790 TTTATAT
1 TTTATAT
8803797 TTGATTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 8 0.30
24 6 0.22
25 13 0.48
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (23 bp):
TTTATATATTTTTTAATACAATA
Found at i:8811826 original size:32 final size:31
Alignment explanation
Indices: 8811779--8811859 Score: 90
Period size: 32 Copynumber: 2.6 Consensus size: 31
8811769 GAAATTTTAG
*
8811779 TTTGTTGGATTTTGAAATTATCATGTCTTAAA
1 TTTGTTGGATATTGAAATTATCATGT-TTAAA
* * * *
8811811 TTTGTTAGATATTGAATTTATTATGTTTAAG
1 TTTGTTGGATATTGAAATTATCATGTTTAAA
* *
8811842 CTTATTGGATATTGAAAT
1 TTTGTTGGATATTGAAAT
8811860 GATTGACAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 18 0.45
32 22 0.55
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.51
Consensus pattern (31 bp):
TTTGTTGGATATTGAAATTATCATGTTTAAA
Found at i:8813232 original size:13 final size:14
Alignment explanation
Indices: 8813203--8813232 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8813193 CTAGAAAAGT
8813203 AAATCATTTTTCAG
1 AAATCATTTTTCAG
8813217 AAATCATTTTTC-G
1 AAATCATTTTTCAG
8813230 AAA
1 AAA
8813233 AACATTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (14 bp):
AAATCATTTTTCAG
Found at i:8813804 original size:153 final size:153
Alignment explanation
Indices: 8813526--8813836 Score: 550
Period size: 153 Copynumber: 2.0 Consensus size: 153
8813516 AAATTTAAAA
8813526 ATATGCCTTTTCGAAATAATTAGAGATATTATTGTCTCATCGTTTTTTCACTTTCTTCTATTCTA
1 ATATGCCTTTTCGAAATAATTAGAGATATTATTGTCTCATCGTTTTTTCACTTTCTTCTATTCTA
* *
8813591 TGGTTTCTCCATAATATTTTGACCAATGAAATATGCTTGTTCCGTAATTCTTTTACTTCTTGAGC
66 TGGTTTCTCCATAATATTTTGACCAATGAAATACGCTTGTTCCGTAATTCTTTTACTTCTTGAAC
**
8813656 TAATATTACTGTTGACTTTTTTT
131 TAATATTACCATTGACTTTTTTT
8813679 ATATGCCTTTTCGAAATAATTAGAGATATTATTGTCTCATCGTTTTTTCACTTTCTTCTATTCTA
1 ATATGCCTTTTCGAAATAATTAGAGATATTATTGTCTCATCGTTTTTTCACTTTCTTCTATTCTA
* * *
8813744 TGGTTTCTCCATAGTATTTTGACCAATGAAATGCGCTTGTTCCTTAATTCTTTTACTTCTTGAAC
66 TGGTTTCTCCATAATATTTTGACCAATGAAATACGCTTGTTCCGTAATTCTTTTACTTCTTGAAC
*
8813809 TAATATTACCATTGATTTTTTTT
131 TAATATTACCATTGACTTTTTTT
8813832 ATATG
1 ATATG
8813837 TCAAATCTAG
Statistics
Matches: 150, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
153 150 1.00
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.49
Consensus pattern (153 bp):
ATATGCCTTTTCGAAATAATTAGAGATATTATTGTCTCATCGTTTTTTCACTTTCTTCTATTCTA
TGGTTTCTCCATAATATTTTGACCAATGAAATACGCTTGTTCCGTAATTCTTTTACTTCTTGAAC
TAATATTACCATTGACTTTTTTT
Found at i:8821457 original size:19 final size:20
Alignment explanation
Indices: 8821433--8821473 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8821423 TTATTGTTAA
8821433 AAAATATAT-TTTTAGAAAT
1 AAAATATATATTTTAGAAAT
* *
8821452 AAAATATTTATTTTAGACAT
1 AAAATATATATTTTAGAAAT
8821472 AA
1 AA
8821474 TGTTATAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.41
Consensus pattern (20 bp):
AAAATATATATTTTAGAAAT
Found at i:8825391 original size:15 final size:15
Alignment explanation
Indices: 8825373--8825416 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
8825363 CTACTGCTAC
8825373 TGTCCAAACTGTTTT
1 TGTCCAAACTGTTTT
8825388 TGTCCAAACTGTTTT
1 TGTCCAAACTGTTTT
* *
8825403 TGTGCAAGCTGTTT
1 TGTCCAAACTGTTT
8825417 ATTACCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (15 bp):
TGTCCAAACTGTTTT
Found at i:8825530 original size:29 final size:29
Alignment explanation
Indices: 8825488--8825546 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
8825478 TCAATTGAGC
8825488 TGATTTTTCTCAATTAACATTTTATTCTA
1 TGATTTTTCTCAATTAACATTTTATTCTA
8825517 TGATTTTTCTCAATTAACATTTTATTCTA
1 TGATTTTTCTCAATTAACATTTTATTCTA
8825546 T
1 T
8825547 CACCTTAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.14, G:0.03, T:0.56
Consensus pattern (29 bp):
TGATTTTTCTCAATTAACATTTTATTCTA
Found at i:8837997 original size:23 final size:23
Alignment explanation
Indices: 8837963--8838079 Score: 112
Period size: 23 Copynumber: 5.0 Consensus size: 23
8837953 CAAAGAACCA
8837963 TATCGGGAAGCTCACGAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* * *
8837986 TATCGGGGAGCTC-CGGATAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* * *
8838008 ATATATCGGGAAGTTCAAG-CGAGCAC
1 ---TATCGGGAAGCTCACGAAGAGC-C
* *
8838034 TACCGGGAAGCTCACAAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
8838057 TATCGGGAAGCTCACGAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
8838080 ATATATCGGG
Statistics
Matches: 73, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
22 7 0.10
23 46 0.63
24 4 0.05
25 14 0.19
26 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.30, T:0.15
Consensus pattern (23 bp):
TATCGGGAAGCTCACGAAGAGCC
Found at i:8840242 original size:3 final size:3
Alignment explanation
Indices: 8840228--8840276 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
8840218 TTTTATACTA
*
8840228 AAT AATT AAT AAT AA- AAT AAT AAT GA- AAT AAT AAT AA- AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8840271 AA- AAT A
1 AAT AAT A
8840277 TCTCATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:8840250 original size:11 final size:11
Alignment explanation
Indices: 8840234--8840272 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
8840224 ACTAAATAAT
8840234 TAATAATAAAA
1 TAATAATAAAA
*
8840245 TAATAATGAAA
1 TAATAATAAAA
8840256 TAATAATAAAA
1 TAATAATAAAA
8840267 TAATAA
1 TAATAA
8840273 AATATCTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:8840259 original size:19 final size:19
Alignment explanation
Indices: 8840235--8840276 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8840225 CTAAATAATT
*
8840235 AATAATAAAATAATAATGA
1 AATAATAAAATAATAATAA
8840254 AATAATAATAA-AATAATAA
1 AATAATAA-AATAATAATAA
8840273 AATA
1 AATA
8840277 TCTCATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (19 bp):
AATAATAAAATAATAATAA
Found at i:8840314 original size:18 final size:20
Alignment explanation
Indices: 8840262--8840314 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
8840252 GAAATAATAA
* *
8840262 TAAAATAATAAAATATCTCAT
1 TAAAATAAT-ATATATCTAAT
8840283 TAAAATAATATATATCTAAT
1 TAAAATAATATATATCTAAT
8840303 T-AAATAAT-TATA
1 TAAAATAATATATA
8840315 AAATATTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 4 0.13
19 7 0.23
20 10 0.33
21 9 0.30
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAAATAATATATATCTAAT
Found at i:8842210 original size:15 final size:15
Alignment explanation
Indices: 8842187--8842216 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8842177 GTCTGAGAGT
8842187 TGGTACCCAAGCCAG
1 TGGTACCCAAGCCAG
*
8842202 TGGTTCCCAAGCCAG
1 TGGTACCCAAGCCAG
8842217 CCCACTGCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.17
Consensus pattern (15 bp):
TGGTACCCAAGCCAG
Found at i:8843558 original size:14 final size:14
Alignment explanation
Indices: 8843520--8843562 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
8843510 TTGCCTTGCA
8843520 AATTTTAAAACATT-
1 AATTTTAAAA-ATTC
*
8843534 ATTTTTCAAAAATTC
1 AATTTT-AAAAATTC
8843549 AATTTTAAAAATTC
1 AATTTTAAAAATTC
8843563 GCAGCGGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (14 bp):
AATTTTAAAAATTC
Found at i:8845154 original size:21 final size:21
Alignment explanation
Indices: 8845119--8845164 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8845109 TATTTAGATC
* *
8845119 AAAAAAAGAGAAGAAATGAGA
1 AAAAAAAGAGAAGAAAAGACA
8845140 AAAAAAAGA-AGAGAAAAGACA
1 AAAAAAAGAGA-AGAAAAGACA
8845161 AAAA
1 AAAA
8845165 GATTAGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAAAAAGAGAAGAAAAGACA
Found at i:8845237 original size:12 final size:12
Alignment explanation
Indices: 8845220--8845246 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8845210 GTACAATGTT
8845220 GTTTTCATGGTG
1 GTTTTCATGGTG
8845232 GTTTTCATGGTG
1 GTTTTCATGGTG
8845244 GTT
1 GTT
8845247 ATAGGCGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.33, T:0.52
Consensus pattern (12 bp):
GTTTTCATGGTG
Found at i:8847604 original size:48 final size:48
Alignment explanation
Indices: 8847549--8847681 Score: 164
Period size: 48 Copynumber: 2.8 Consensus size: 48
8847539 ACACAAATAA
*
8847549 AATATATTACCATCAT-GGATGGCAT-GACAATGATGGTTCATTCTATTC
1 AATATATTACCATC-TCGAATGGC-TCGACAATGATGGTTCATTCTATTC
*
8847597 AATATATTACCATCTCGAATGGCTCGACAATGATGGTTCATTCTATTT
1 AATATATTACCATCTCGAATGGCTCGACAATGATGGTTCATTCTATTC
* * *
8847645 AA-ATATTCTACCATCCCGAATGGCCCGACAACGATGG
1 AATATA-T-TACCATCTCGAATGGCTCGACAATGATGG
8847682 CTGTCATTAT
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
47 5 0.07
48 45 0.59
49 26 0.34
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Consensus pattern (48 bp):
AATATATTACCATCTCGAATGGCTCGACAATGATGGTTCATTCTATTC
Found at i:8847708 original size:49 final size:49
Alignment explanation
Indices: 8847574--8847696 Score: 133
Period size: 49 Copynumber: 2.5 Consensus size: 49
8847564 TGGATGGCAT
* * * * *
8847574 GACAATGATGGTTCATTCTA-TTCAATATAT-TACCATCTCGAATGGCTC
1 GACAACGATGGTTCATTATACTTAAATAT-TCTACCATCCCGAATGGCCC
* * *
8847622 GACAATGATGGTTCATTCTATTTAAATATTCTACCATCCCGAATGGCCC
1 GACAACGATGGTTCATTATACTTAAATATTCTACCATCCCGAATGGCCC
8847671 GACAACGATGGCTGTCATTATACTTA
1 GACAACGATGG-T-TCATTATACTTA
8847697 CGTTTCACCA
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
48 21 0.32
49 33 0.51
50 1 0.02
51 10 0.15
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (49 bp):
GACAACGATGGTTCATTATACTTAAATATTCTACCATCCCGAATGGCCC
Found at i:8862155 original size:4 final size:4
Alignment explanation
Indices: 8862146--8862170 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8862136 AAATAATTTA
8862146 TAAT TAAT TAAT TAAT TAAT TAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT T
8862171 TATATAGTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TAAT
Found at i:8866107 original size:19 final size:19
Alignment explanation
Indices: 8866066--8866108 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
8866056 CAAGCCAAAT
* ** *
8866066 TATTTTATAAAATTATTAT
1 TATTTTAAAAAATTAAAAA
8866085 TATTTTAAAAAATTAAAAA
1 TATTTTAAAAAATTAAAAA
8866104 TATTT
1 TATTT
8866109 AATAGTCATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTTTAAAAAATTAAAAA
Found at i:8867967 original size:30 final size:30
Alignment explanation
Indices: 8867933--8867991 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
8867923 AGCCAAAAAC
8867933 TCTCAAATTGCTCCCTAAATTTCTCAAAGT
1 TCTCAAATTGCTCCCTAAATTTCTCAAAGT
* *
8867963 TCTCAAATTTCTCCTTAAATTTCTCAAAG
1 TCTCAAATTGCTCCCTAAATTTCTCAAAG
8867992 CTCTTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
TCTCAAATTGCTCCCTAAATTTCTCAAAGT
Found at i:8869747 original size:18 final size:18
Alignment explanation
Indices: 8869724--8869766 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8869714 TGCTAAGTGC
* *
8869724 GTATCCTAGCCTTTATAT
1 GTATCCTAACCCTTATAT
8869742 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
8869760 GTTTCCT
1 GTATCCT
8869767 TTTCCCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:8873447 original size:126 final size:125
Alignment explanation
Indices: 8873221--8873741 Score: 715
Period size: 126 Copynumber: 4.1 Consensus size: 125
8873211 AGCCAAACAT
* * * *
8873221 GAACTATTGTAGAAAAAGAGCATCCACGTGAGAGCCTTTTTTCAGTAATTTTGCTGATAGTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAG-CTTTTTTCA-TAATTTTGCTGACAGTGCAT
* * * *
8873286 CCTGCTTAAAGCATTATAGACACTATTTGTTCAGAAAC-GTCTTCTCAAAATTATTTTTTTAG
64 CCTGCTTAAAGCGTTTTTGACACTATTTGTTCAG-AACTGTCTTCTCAAAATTATTTTTTCAG
* *
8873348 GAACTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAT-AATTTTGCTGACAGTGCATC
* * *
8873413 CTACTTAAAGCGTTTTTTACACTATTTTTTCAGAAAC-GTCTTCTCAAAATTATTTTTTCAG
65 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAG-AACTGTCTTCTCAAAATTATTTTTTCAG
* * *
8873474 GAACTACTGTAGAAAGAGAGCGTCCACGTGGGAGCTTTTTTCTTCAATTTTGTTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAT-AATTTTGCTGACAGTGCATC
* * * * *
8873539 CTGCTTGAAGCGTTTTTGACACTATCTGTTCAGAACTATTTTTTCAAAATTATTTTTT-AG
65 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATTATTTTTTCAG
* *
8873599 GAACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAATAATTTTACTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTC-ATAATTTTGCTGACAGTGCATC
* * * *
8873664 CTGCTTGAAGCGTTTTTGACACTATTTGTTTAGAACTGCCTTTTCAAAATTATTTTTTCAG
65 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATTATTTTTTCAG
8873725 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
8873742 AACCAAGATC
Statistics
Matches: 354, Mismatches: 36, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
125 117 0.33
126 208 0.59
127 29 0.08
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (125 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATAATTTTGCTGACAGTGCATCC
TGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATTATTTTTTCAG
Found at i:8873713 original size:251 final size:253
Alignment explanation
Indices: 8873221--8873741 Score: 750
Period size: 251 Copynumber: 2.1 Consensus size: 253
8873211 AGCCAAACAT
* *
8873221 GAACTATTGTAGAAAAAGAGCATCCACGTGAGAGCCTTTTTTCAGTAATTTTGCTGATAGTGCAT
1 GAACTACTGTAGAAAAAGAGCATCCACGTGAGAGCCTTTTTTCAGTAATTTTGCTGACAGTGCAT
* *
8873286 CCTGCTTAAAGCATTATAGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTTAGGAA
66 CCTGCTTAAAGCATTATAGACACTATCTGTTCAGAAACATCTTCTCAAAATTATTTTTTTAGGAA
*
8873351 CTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTA
131 CTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCATCAATTTTACTGACAGTGCATCCTA
* *
8873416 CTTAAAGCGTTTTTTACACTATTTTTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
196 CTTAAAGCGTTTTTGACACTATTTTTTCAGAAACGCCTTCTCAAAATTATTTTTTCAG
* * * * *
8873474 GAACTACTGTAGAAAGAGAGCGTCCACGTGGGAG-CTTTTTTC-TTCAATTTTGTTGACAGTGCA
1 GAACTACTGTAGAAAAAGAGCATCCACGTGAGAGCCTTTTTTCAGT-AATTTTGCTGACAGTGCA
* * * * * *
8873537 TCCTGCTTGAAGCGTTTTTGACACTATCTGTTCAG-AACTATTTTTTCAAAATTA-TTTTTTAGG
65 TCCTGCTTAAAGCATTATAGACACTATCTGTTCAGAAAC-ATCTTCTCAAAATTATTTTTTTAGG
*
8873600 AACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAAT-AATTTTACTGACAGTGCATC
129 AACTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTC-ATCAATTTTACTGACAGTGCATC
* * *
8873664 CTGCTTGAAGCGTTTTTGACACTATTTGTTT-AG-AACTGCCTTTTCAAAATTATTTTTTCAG
193 CTACTTAAAGCGTTTTTGACACTATTT-TTTCAGAAAC-GCCTTCTCAAAATTATTTTTTCAG
8873725 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
8873742 AACCAAGATC
Statistics
Matches: 240, Mismatches: 23, Indels: 12
0.87 0.08 0.04
Matches are distributed among these distances:
250 3 0.01
251 136 0.57
252 71 0.30
253 30 0.12
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (253 bp):
GAACTACTGTAGAAAAAGAGCATCCACGTGAGAGCCTTTTTTCAGTAATTTTGCTGACAGTGCAT
CCTGCTTAAAGCATTATAGACACTATCTGTTCAGAAACATCTTCTCAAAATTATTTTTTTAGGAA
CTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCATCAATTTTACTGACAGTGCATCCTA
CTTAAAGCGTTTTTGACACTATTTTTTCAGAAACGCCTTCTCAAAATTATTTTTTCAG
Found at i:8873857 original size:34 final size:34
Alignment explanation
Indices: 8873802--8873877 Score: 116
Period size: 34 Copynumber: 2.2 Consensus size: 34
8873792 CCCAATATTA
*
8873802 TTTTAAAAAAATTAAACCTAAATTTAATTAATTT
1 TTTTAAAAAAACTAAACCTAAATTTAATTAATTT
* *
8873836 TTTTAAAAACACTAAATCTAAATTTAATTAATTT
1 TTTTAAAAAAACTAAACCTAAATTTAATTAATTT
*
8873870 ATTTAAAA
1 TTTTAAAA
8873878 CCCTTAAACC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (34 bp):
TTTTAAAAAAACTAAACCTAAATTTAATTAATTT
Found at i:8873894 original size:34 final size:34
Alignment explanation
Indices: 8873813--8873936 Score: 128
Period size: 34 Copynumber: 3.7 Consensus size: 34
8873803 TTTAAAAAAA
* *
8873813 TTAAACCTAAATTTAATTAATTTTTTTAAAAACAC
1 TTAAACCTAAATTTAATTAATTTATTT-AAAACCC
*
8873848 -TAAATCTAAATTTAATTAATTTATTTAAAACCC
1 TTAAACCTAAATTTAATTAATTTATTTAAAACCC
* **
8873881 TTAAACCCT-AATTTAATTTATTTATTTAACCCCC
1 TTAAA-CCTAAATTTAATTAATTTATTTAAAACCC
** *
8873915 CGAACCCT-AATTTAATTAATTT
1 TTAAACCTAAATTTAATTAATTT
8873937 TTAAAAAAGA
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
33 22 0.29
34 52 0.68
35 2 0.03
ACGTcount: A:0.40, C:0.16, G:0.01, T:0.43
Consensus pattern (34 bp):
TTAAACCTAAATTTAATTAATTTATTTAAAACCC
Found at i:8874494 original size:50 final size:50
Alignment explanation
Indices: 8874394--8874486 Score: 127
Period size: 50 Copynumber: 1.9 Consensus size: 50
8874384 AATTTATATT
* * **
8874394 TCTAGTGATTTTAATTGTTATTAATAAATTTATATATCTAATGATTTTTA
1 TCTAGTGATTTTAATTGTTATTAATAAATTTATATATATAATAAAATTTA
*
8874444 TCTAGTGATTTTAATTGTTATTTATAAATTTAT-TA-ATAATAAA
1 TCTAGTGATTTTAATTGTTATTAATAAATTTATATATATAATAAA
8874487 CAATTTATAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 5 0.13
49 2 0.05
50 32 0.82
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.53
Consensus pattern (50 bp):
TCTAGTGATTTTAATTGTTATTAATAAATTTATATATATAATAAAATTTA
Found at i:8902310 original size:16 final size:16
Alignment explanation
Indices: 8902287--8902334 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
8902277 TTAAATATAT
8902287 AAAA-AAATAAAAATA
1 AAAATAAATAAAAATA
*
8902302 AAAATAAATAAAAATT
1 AAAATAAATAAAAATA
*
8902318 AAATTAAATTAAAAATA
1 AAAATAAA-TAAAAATA
8902335 TAATCTCTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 4 0.14
16 17 0.61
17 7 0.25
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATAAATAAAAATA
Found at i:8903431 original size:27 final size:27
Alignment explanation
Indices: 8903393--8903470 Score: 129
Period size: 27 Copynumber: 2.9 Consensus size: 27
8903383 AATATAGGTT
8903393 GAGGGTACCCCATAGGCGGCACCGGTG
1 GAGGGTACCCCATAGGCGGCACCGGTG
* * *
8903420 GAGGGTATCCCATAGGCGGCATCGGTT
1 GAGGGTACCCCATAGGCGGCACCGGTG
8903447 GAGGGTACCCCATAGGCGGCACCG
1 GAGGGTACCCCATAGGCGGCACCG
8903471 ATGCTGCTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.19, C:0.28, G:0.38, T:0.14
Consensus pattern (27 bp):
GAGGGTACCCCATAGGCGGCACCGGTG
Found at i:8903979 original size:11 final size:11
Alignment explanation
Indices: 8903963--8903992 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
8903953 TAAATTTAAG
8903963 AATTAAATTCC
1 AATTAAATTCC
8903974 AATTAAATTCC
1 AATTAAATTCC
8903985 AATTAAAT
1 AATTAAAT
8903993 CAACAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (11 bp):
AATTAAATTCC
Found at i:8904298 original size:27 final size:27
Alignment explanation
Indices: 8904268--8904324 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
8904258 TGGCAGCAGC
8904268 ACCGGTGCCGCCTATGGGGTACCCTCA
1 ACCGGTGCCGCCTATGGGGTACCCTCA
8904295 ACCGGTGCCGCCTATGGGGTACCCTCA
1 ACCGGTGCCGCCTATGGGGTACCCTCA
8904322 ACC
1 ACC
8904325 TATATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.16, C:0.39, G:0.28, T:0.18
Consensus pattern (27 bp):
ACCGGTGCCGCCTATGGGGTACCCTCA
Found at i:8906558 original size:5 final size:5
Alignment explanation
Indices: 8906548--8906624 Score: 52
Period size: 5 Copynumber: 15.0 Consensus size: 5
8906538 AATATTTAAC
* * * *
8906548 TAAAA TAAAA TAAAA TAAAAA GAAAA GAAAA TAATAA -ATAA TAAAA -GAAA
1 TAAAA TAAAA TAAAA T-AAAA TAAAA TAAAA TAA-AA TAAAA TAAAA TAAAA
8906598 -AAAA TAAAAA TAAAAA TAAAAA TAAAA
1 TAAAA T-AAAA T-AAAA T-AAAA TAAAA
8906625 AGAAAGATTG
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
4 8 0.13
5 30 0.49
6 23 0.38
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.16
Consensus pattern (5 bp):
TAAAA
Found at i:8906595 original size:20 final size:19
Alignment explanation
Indices: 8906559--8906625 Score: 91
Period size: 20 Copynumber: 3.5 Consensus size: 19
8906549 AAAATAAAAT
*
8906559 AAAATAAAAAGAAAAGAAA
1 AAAATAAAAATAAAAGAAA
*
8906578 ATAATAAATAATAAAAGAAA
1 AAAATAAA-AATAAAAGAAA
*
8906598 AAAATAAAAATAAAA-ATA
1 AAAATAAAAATAAAAGAAA
8906616 AAAATAAAAA
1 AAAATAAAAA
8906626 GAAAGATTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
18 12 0.28
19 14 0.33
20 17 0.40
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.13
Consensus pattern (19 bp):
AAAATAAAAATAAAAGAAA
Found at i:8906605 original size:13 final size:12
Alignment explanation
Indices: 8906554--8906625 Score: 56
Period size: 13 Copynumber: 5.7 Consensus size: 12
8906544 TAACTAAAAT
*
8906554 AAAATAAAATAA
1 AAAAAAAAATAA
8906566 AAAGAAAAGAA-AA
1 AAA-AAAA-AATAA
* *
8906579 TAATAAATAATAA
1 -AAAAAAAAATAA
8906592 AAGAAAAAAATAA
1 AA-AAAAAAATAA
*
8906605 AAATAAAAATAA
1 AAAAAAAAATAA
8906617 AAATAAAAA
1 AAA-AAAAA
8906626 GAAAGATTGG
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
12 19 0.40
13 24 0.51
14 4 0.09
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.14
Consensus pattern (12 bp):
AAAAAAAAATAA
Found at i:8906606 original size:6 final size:6
Alignment explanation
Indices: 8906549--8906625 Score: 79
Period size: 6 Copynumber: 12.7 Consensus size: 6
8906539 ATATTTAACT
* *
8906549 AAAAT- AAAAT- AAAATA AAAAGA AAAGA-A AATAATA AATAATA AAAGAAA
1 AAAATA AAAATA AAAATA AAAATA AAA-ATA AA-AATA AA-AATA AAA-ATA
8906598 AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
8906626 GAAAGATTGG
Statistics
Matches: 64, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
5 10 0.16
6 37 0.58
7 17 0.27
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.14
Consensus pattern (6 bp):
AAAATA
Done.