Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 300 of 311
Found at i:97649311 original size:17 final size:16
Alignment explanation
Indices: 97649265--97649316 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 16
97649255 GTGGCAAGTA
97649265 GGGTAATGGAGTTAGTG
1 GGGT-ATGGAGTTAGTG
*
97649282 GGGTA--G-CTTAGTG
1 GGGTATGGAGTTAGTG
97649295 GGGTGATGGAGTTAGTG
1 GGGT-ATGGAGTTAGTG
97649312 GGGTA
1 GGGTA
97649317 GTTTAAGAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
13 10 0.34
14 2 0.07
16 3 0.10
17 14 0.48
ACGTcount: A:0.19, C:0.02, G:0.50, T:0.29
Consensus pattern (16 bp):
GGGTATGGAGTTAGTG
Found at i:97650100 original size:133 final size:131
Alignment explanation
Indices: 97649573--97650094 Score: 738
Period size: 133 Copynumber: 3.9 Consensus size: 131
97649563 GATCTGCTGT
** ** * *
97649573 AATTTGATCTGCTTTACTCCTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAGTA--TATAGCCTGCTCCACTCC
** * * *
97649638 TGCTCAGTGAAGATAAGGCTGATGATTGGAACCTGCTCCATTGCCGATACATGGGGATAAGATTC
64 TGCTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
97649703 ATCAA
129 --CAA
* * *
97649708 AATTTGATCTGCTCCGCTCCTACTCAGCGAAAATAAGATCTAGTATATAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
97649773 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
66 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATT--C
97649838 CAA
129 CAA
* *
97649841 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
* * *
97649906 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTTCTTTGCCGATACATGGAGATAAGACTTGC
66 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGA-TT-C
97649971 CAA
129 CAA
* *
97649974 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
* * * * *
97650039 CTCATTGAAGATGAGGCTGGTGGTTGAAATCTGCTCCATTGTCGATACATGGAGAT
66 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGAT
97650095 GAGACTCGCT
Statistics
Matches: 353, Mismatches: 31, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
133 313 0.89
134 2 0.01
135 38 0.11
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (131 bp):
AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCCA
A
Found at i:97650120 original size:45 final size:45
Alignment explanation
Indices: 97650067--97650163 Score: 113
Period size: 45 Copynumber: 2.2 Consensus size: 45
97650057 GGTGGTTGAA
* * * * * **
97650067 ATCTGCTCCATTGTCGATACATGGAGATGAGACTCGCTATCTTCG
1 ATCTGCTCCATAGCCAATACATAGAGATAAGACTCGAAATCTTCG
*
97650112 ATCTGCTCCATAGCCAATACATAGAGATAAGATTCGAAATCTTCG
1 ATCTGCTCCATAGCCAATACATAGAGATAAGACTCGAAATCTTCG
*
97650157 GTCTGCT
1 ATCTGCT
97650164 TCCTGCAACT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (45 bp):
ATCTGCTCCATAGCCAATACATAGAGATAAGACTCGAAATCTTCG
Found at i:97650185 original size:176 final size:172
Alignment explanation
Indices: 97650047--97650727 Score: 735
Period size: 176 Copynumber: 3.9 Consensus size: 172
97650037 TGCTCATTGA
* * * * * * * * * *
97650047 AGATGAGGCTGGTGGTTGAAATCTGCTCCATTGTCGATACATGGAGATGAGACTCGCTATCTTCG
1 AGATAAGGCTGATGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTCG
* *
97650112 ATCTGCTCCATAGCCAATACATAGAGATAAGATTCGAAATCTTCGGTCTGCTTCCTGCAACTTCA
66 ATCTGCTCCATAGCCGATACATAGAGATAAGATTCGAAAT-TTCGGTCTACTTCCTGCAACTTCA
* *
97650177 GAAAGATAAGACTTGTATCTTCAACCTGCTCTCTGCAACT-TCAGAG
130 GAAAGATAAGACCTGTATCTTCAACCTGCTCACT----CTGTCAGAG
* * * * * **
97650223 AGATAAGGCTGATGGTTAAAATCTGCTCCATAGCCAATACATGGAGGTAAAACTCGCCATTTTTT
1 AGATAAGGCTGATGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTCG
* * * * *
97650288 ATCTGCTCAATAGCCGATATATAGAGATAA-AATCTGTAAATTTTGGTCTGCTT-CTAGCAACTT
66 ATCTGCTCCATAGCCGATACATAGAGATAAGATTC-G-AAATTTCGGTCTACTTCCT-GCAACTT
* * *
97650351 CAGACATATAAGACCTGTATCTTCAACCTGCTCTCTATAACT-TCAGAG
128 CAGAAAGATAAGACCTGTATCTTCAACCTGCTCAC--T--CTGTCAGAG
*
97650399 AGATAAAGCTGATGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCA-TTTCT
1 AGATAAGGCTGATGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTC-
* * * **
97650463 GACCTGCTCCATAGCCGATATATGGAGATAAGATCTATAAATTTCGGTCTACTTCCTGCAACTTC
65 GATCTGCTCCATAGCCGATACATAGAGATAAGAT-TCGAAATTTCGGTCTACTTCCTGCAACTTC
* *
97650528 AGAAAGATAATACCTGTATCTTCAACCTGCTCTCTGTAACT-TCAGAG
129 AGAAAGATAAGACCTGTATCTTCAACCTGCTCAC--T--CTGTCAGAG
* * **
97650575 AGATAAGGTTGATGGCTAAAATCTGCTCCATAGCCGATACATAGAGTTAAGACTCGCCATTTTTT
1 AGATAAGGCTGATGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTCG
* * * *
97650640 ATCTGCTCCATAGCCGATACATGGAGATAAGATTTGAAATCTTCGGCCTACTTCCTACAACTTCA
66 ATCTGCTCCATAGCCGATACATAGAGATAAGATTCGAAAT-TTCGGTCTACTTCCTGCAACTTCA
*
97650705 GAAAGACAAGACCTGTATCTTCA
130 GAAAGATAAGACCTGTATCTTCA
97650728 CTGATGTCGC
Statistics
Matches: 440, Mismatches: 54, Indels: 22
0.85 0.10 0.04
Matches are distributed among these distances:
175 13 0.03
176 415 0.94
177 10 0.02
178 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (172 bp):
AGATAAGGCTGATGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTCG
ATCTGCTCCATAGCCGATACATAGAGATAAGATTCGAAATTTCGGTCTACTTCCTGCAACTTCAG
AAAGATAAGACCTGTATCTTCAACCTGCTCACTCTGTCAGAG
Found at i:97650454 original size:352 final size:352
Alignment explanation
Indices: 97650065--97650727 Score: 974
Period size: 352 Copynumber: 1.9 Consensus size: 352
97650055 CTGGTGGTTG
* * * * * *
97650065 AAATCTGCTCCATTGTCGATACATGGAGATGAGACTCGCTATCTTC-GATCTGCTCCATAGCCAA
1 AAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCAT-TTCTGACCTGCTCCATAGCCAA
* * *
97650129 TACATAGAGATAAGAT-TCGAAATCTTCGGTCTGCTTCCTGCAACTTCAGAAAGATAAGACTTGT
65 TACATAGAGATAAGATCTAGAAAT-TTCGGTCTACTTCCTGCAACTTCAGAAAGATAAGACCTGT
*
97650193 ATCTTCAACCTGCTCTCTGCAACTTCAGAGAGATAAGGCTGATGGTTAAAATCTGCTCCATAGCC
129 ATCTTCAACCTGCTCTCTGCAACTTCAGAGAGATAAGGCTGATGGCTAAAATCTGCTCCATAGCC
* *
97650258 AATACATGGAGGTAAAACTCGCCATTTTTTATCTGCTCAATAGCCGATATATAGAGATAAAATCT
194 AATACATAGAGGTAAAACTCGCCATTTTTTATCTGCTCAATAGCCGATACATAGAGATAAAATCT
* * * * * *
97650323 GTAAAT-TTTGGTCTGCTT-CTAGCAACTTCAGACATATAAGACCTGTATCTTCAACCTGCTCTC
259 G-AAATCTTCGGCCTACTTCCTA-CAACTTCAGAAAGACAAGACCTGTATCTTCAACCTGCTCTC
97650386 TATAACTTCAGAGAGATAAAGCTGATGGCTA
322 TATAACTTCAGAGAGATAAAGCTGATGGCTA
*
97650417 AAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTCTGACCTGCTCCATAGCCGAT
1 AAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTCTGACCTGCTCCATAGCCAAT
* * * *
97650482 ATATGGAGATAAGATCTATAAATTTCGGTCTACTTCCTGCAACTTCAGAAAGATAATACCTGTAT
66 ACATAGAGATAAGATCTAGAAATTTCGGTCTACTTCCTGCAACTTCAGAAAGATAAGACCTGTAT
* * *
97650547 CTTCAACCTGCTCTCTGTAACTTCAGAGAGATAAGGTTGATGGCTAAAATCTGCTCCATAGCCGA
131 CTTCAACCTGCTCTCTGCAACTTCAGAGAGATAAGGCTGATGGCTAAAATCTGCTCCATAGCCAA
* * * * * *
97650612 TACATAGAGTTAAGACTCGCCATTTTTTATCTGCTCCATAGCCGATACATGGAGATAAGATTTGA
196 TACATAGAGGTAAAACTCGCCATTTTTTATCTGCTCAATAGCCGATACATAGAGATAAAATCTGA
97650677 AATCTTCGGCCTACTTCCTACAACTTCAGAAAGACAAGACCTGTATCTTCA
261 AATCTTCGGCCTACTTCCTACAACTTCAGAAAGACAAGACCTGTATCTTCA
97650728 CTGATGTCGC
Statistics
Matches: 275, Mismatches: 32, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
351 7 0.03
352 260 0.95
353 8 0.03
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (352 bp):
AAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTCTGACCTGCTCCATAGCCAAT
ACATAGAGATAAGATCTAGAAATTTCGGTCTACTTCCTGCAACTTCAGAAAGATAAGACCTGTAT
CTTCAACCTGCTCTCTGCAACTTCAGAGAGATAAGGCTGATGGCTAAAATCTGCTCCATAGCCAA
TACATAGAGGTAAAACTCGCCATTTTTTATCTGCTCAATAGCCGATACATAGAGATAAAATCTGA
AATCTTCGGCCTACTTCCTACAACTTCAGAAAGACAAGACCTGTATCTTCAACCTGCTCTCTATA
ACTTCAGAGAGATAAAGCTGATGGCTA
Found at i:97651976 original size:14 final size:13
Alignment explanation
Indices: 97651957--97651991 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
97651947 TTCATTTCTT
*
97651957 TTCTTTTTTTTGTG
1 TTCTTTTTTTT-TA
97651971 TTCTTTTTTTTTA
1 TTCTTTTTTTTTA
97651984 TTCTTTTT
1 TTCTTTTT
97651992 GATTTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.03, C:0.09, G:0.06, T:0.83
Consensus pattern (13 bp):
TTCTTTTTTTTTA
Found at i:97652076 original size:18 final size:18
Alignment explanation
Indices: 97652055--97652098 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
97652045 TGTTTTTTTA
*
97652055 TTTTTTTTTATTTT-TCCC
1 TTTTTTTGTATTTTCT-CC
97652073 TTTTTTTGTATTTTCTCC
1 TTTTTTTGTATTTTCTCC
97652091 TTTTTTTG
1 TTTTTTTG
97652099 AAACTGTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.05, C:0.14, G:0.05, T:0.77
Consensus pattern (18 bp):
TTTTTTTGTATTTTCTCC
Found at i:97654844 original size:27 final size:29
Alignment explanation
Indices: 97654809--97654866 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 29
97654799 ATTTTATGAA
97654809 AATAAAATGCAAATG-ATGCAATG-ATGC
1 AATAAAATGCAAATGCATGCAATGAATGC
* *
97654836 AATATAATGCAAATGCATGGAATGAATGC
1 AATAAAATGCAAATGCATGCAATGAATGC
97654865 AA
1 AA
97654867 AAGAAAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 14 0.52
28 7 0.26
29 6 0.22
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.22
Consensus pattern (29 bp):
AATAAAATGCAAATGCATGCAATGAATGC
Found at i:97656877 original size:3 final size:3
Alignment explanation
Indices: 97656869--97656970 Score: 52
Period size: 3 Copynumber: 34.0 Consensus size: 3
97656859 TAGTGCCATT
* * * * * *
97656869 ATA ATA ATA AAA ATA ACA AT- ATG TTA CTA ATA ATAA ATAA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A ATA ATA
* *
97656915 GTA ATA TATA TATA A-A ATA ATA GTA A-A AGTA ATA A-A ATA A-A ATA
1 ATA ATA -ATA -ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA
97656959 ATA ATA ATA ATA
1 ATA ATA ATA ATA
97656971 CTCTCCCCCT
Statistics
Matches: 77, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
2 10 0.13
3 51 0.66
4 16 0.21
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:97657369 original size:30 final size:30
Alignment explanation
Indices: 97657333--97657411 Score: 122
Period size: 30 Copynumber: 2.6 Consensus size: 30
97657323 AGGGTAATGG
97657333 AGTTAGTGGGGTAGCTTAGTACGGTGATGA
1 AGTTAGTGGGGTAGCTTAGTACGGTGATGA
* **
97657363 AGTTAGTGGGGTGGCTTAGTGGGGTGATGA
1 AGTTAGTGGGGTAGCTTAGTACGGTGATGA
*
97657393 AGTTAGTGGGGTAGTTTAG
1 AGTTAGTGGGGTAGCTTAG
97657412 GAGTTAGTGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.20, C:0.04, G:0.44, T:0.32
Consensus pattern (30 bp):
AGTTAGTGGGGTAGCTTAGTACGGTGATGA
Found at i:97657375 original size:17 final size:17
Alignment explanation
Indices: 97657355--97657404 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
97657345 AGCTTAGTAC
97657355 GGTGATGAAGTTAGTGG
1 GGTGATGAAGTTAGTGG
*
97657372 GGTG--G--CTTAGTGG
1 GGTGATGAAGTTAGTGG
97657385 GGTGATGAAGTTAGTGG
1 GGTGATGAAGTTAGTGG
97657402 GGT
1 GGT
97657405 AGTTTAGGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
13 11 0.41
15 2 0.07
17 14 0.52
ACGTcount: A:0.18, C:0.02, G:0.50, T:0.30
Consensus pattern (17 bp):
GGTGATGAAGTTAGTGG
Found at i:97661608 original size:16 final size:16
Alignment explanation
Indices: 97661587--97661617 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
97661577 TTATGTTAAA
97661587 ATTTTCATTCATTTGT
1 ATTTTCATTCATTTGT
97661603 ATTTTCATTCATTTG
1 ATTTTCATTCATTTG
97661618 GGAAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.06, T:0.61
Consensus pattern (16 bp):
ATTTTCATTCATTTGT
Found at i:97669966 original size:14 final size:17
Alignment explanation
Indices: 97669935--97669971 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
97669925 ATTATAAAGG
97669935 ATATTATTAAATTAATT
1 ATATTATTAAATTAATT
97669952 ATATTA-TAAA-T-ATT
1 ATATTATTAAATTAATT
97669966 ATATTA
1 ATATTA
97669972 AGAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 4 0.20
17 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTATTAAATTAATT
Found at i:97670147 original size:14 final size:14
Alignment explanation
Indices: 97670121--97670171 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
97670111 GAAAACAAAA
97670121 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
97670135 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
97670149 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
97670164 G-AATAAAA
1 GAAATAAAA
97670172 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:97670182 original size:17 final size:16
Alignment explanation
Indices: 97670160--97670193 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97670150 AAGTTAAAAT
97670160 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
97670177 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
97670193 A
1 A
97670194 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:97671108 original size:22 final size:25
Alignment explanation
Indices: 97671065--97671141 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 25
97671055 TGAAAATGTG
* *
97671065 TGAATTTGTGAAATAATTATTG-AT
1 TGAATGTGTGAAATAATGATTGAAT
97671089 TGAATGTG-GAAA-AATGATTGAAT
1 TGAATGTGTGAAATAATGATTGAAT
* **
97671112 TGAAAGTGTGAGAAATTGTGATTGAAT
1 TG-AA-TGTGTGAAATAATGATTGAAT
97671139 TGA
1 TGA
97671142 GAATATATGT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
22 7 0.16
23 8 0.18
24 9 0.20
25 4 0.09
26 5 0.11
27 11 0.25
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (25 bp):
TGAATGTGTGAAATAATGATTGAAT
Found at i:97671113 original size:23 final size:24
Alignment explanation
Indices: 97671065--97671122 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
97671055 TGAAAATGTG
* *
97671065 TGAATTTGTGAAATAATTATTGAT
1 TGAATGTGTGAAATAATGATTGAT
97671089 TGAATGTG-GAAA-AATGATTGAAT
1 TGAATGTGTGAAATAATGATTG-AT
*
97671112 TGAAAGTGTGA
1 TGAATGTGTGA
97671123 GAAATTGTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 7 0.24
23 13 0.45
24 9 0.31
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (24 bp):
TGAATGTGTGAAATAATGATTGAT
Found at i:97671344 original size:37 final size:39
Alignment explanation
Indices: 97671285--97671380 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
97671275 CGGATAGATT
* * * *
97671285 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
97671322 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
97671361 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
97671381 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:97677176 original size:33 final size:33
Alignment explanation
Indices: 97677109--97677176 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
97677099 GCATGATCAA
* * *
97677109 GAATTTGATATTCCTTAACAAAGTCTCCTGTTT
1 GAATTCGATATTCCTTAACAAAATCTCCTATTT
*
97677142 GAATTCGATATTCCTTGAA-AAAATCTCTTATTT
1 GAATTCGATATTCCTT-AACAAAATCTCCTATTT
97677175 GA
1 GA
97677177 GTTCAATAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (33 bp):
GAATTCGATATTCCTTAACAAAATCTCCTATTT
Found at i:97683156 original size:114 final size:114
Alignment explanation
Indices: 97682956--97683180 Score: 351
Period size: 114 Copynumber: 2.0 Consensus size: 114
97682946 AGAATTACTA
* ** * *
97682956 TTATCAAATCGAGTAAGGAACAACTGGCATCAAGTTGGCATACAACATTTTACTTATTTCCTTTA
1 TTATCAAATCGAGTAAGGAACAACTCGCATCAAGTTAACAGACAACATTTTACTTATTGCCTTTA
** * *
97683021 ACATATGTGATAAGCTAAAATCTTGAATATGATCATATTTGATTTGGTT
66 ACATACATGACAAGCTAAAATCTTGAATATGATCATATTCGATTTGGTT
*
97683070 TTATCAAATCGAGTAAGGAACAACTCGCATCAAGTTAATAGACAACATTTTACTTATTGCCTTTA
1 TTATCAAATCGAGTAAGGAACAACTCGCATCAAGTTAACAGACAACATTTTACTTATTGCCTTTA
*
97683135 ACATACATGACAAGCTAAAATCTTGAATTTGATCATATTCGATTTG
66 ACATACATGACAAGCTAAAATCTTGAATATGATCATATTCGATTTG
97683181 ATCCATATGT
Statistics
Matches: 100, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
114 100 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35
Consensus pattern (114 bp):
TTATCAAATCGAGTAAGGAACAACTCGCATCAAGTTAACAGACAACATTTTACTTATTGCCTTTA
ACATACATGACAAGCTAAAATCTTGAATATGATCATATTCGATTTGGTT
Found at i:97692390 original size:13 final size:13
Alignment explanation
Indices: 97692372--97692397 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97692362 TATAAATACC
97692372 CTGACTTGAGACG
1 CTGACTTGAGACG
97692385 CTGACTTGAGACG
1 CTGACTTGAGACG
97692398 AGACAGGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
CTGACTTGAGACG
Found at i:97695083 original size:31 final size:31
Alignment explanation
Indices: 97695048--97695108 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
97695038 CTAAATCCAA
97695048 CTTATTAGCATAATAATATAGATAGGTGGGG
1 CTTATTAGCATAATAATATAGATAGGTGGGG
*
97695079 CTTATTAGCATAGTAATATAGATAGGTGGG
1 CTTATTAGCATAATAATATAGATAGGTGGG
97695109 AAGGGAGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.07, G:0.26, T:0.33
Consensus pattern (31 bp):
CTTATTAGCATAATAATATAGATAGGTGGGG
Found at i:97704299 original size:17 final size:18
Alignment explanation
Indices: 97704277--97704310 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
97704267 ATAAACCCAG
97704277 AAAAGAAAAAGG-AAAAA
1 AAAAGAAAAAGGTAAAAA
*
97704294 AAAAGAAGAAGGTAAAA
1 AAAAGAAAAAGGTAAAA
97704311 TTATGGTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (18 bp):
AAAAGAAAAAGGTAAAAA
Found at i:97727337 original size:18 final size:18
Alignment explanation
Indices: 97727290--97727338 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
97727280 ATCAGAACAT
97727290 ATAATAAAATTAT-TAAAA
1 ATAAT-AAATTATATAAAA
* * *
97727308 ATGATTATTTATATAAAA
1 ATAATAAATTATATAAAA
97727326 ATAATAAATTATA
1 ATAATAAATTATA
97727339 GGGTAAATTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
ATAATAAATTATATAAAA
Found at i:97727368 original size:23 final size:23
Alignment explanation
Indices: 97727342--97727390 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
97727332 AATTATAGGG
*
97727342 TAAATTTTTATTTAAATA-TAATT
1 TAAA-TTTGATTTAAATATTAATT
*
97727365 TAAATTTGATTTAATTATTAATT
1 TAAATTTGATTTAAATATTAATT
97727388 TAA
1 TAA
97727391 TTTATCATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TAAATTTGATTTAAATATTAATT
Found at i:97733540 original size:28 final size:28
Alignment explanation
Indices: 97733500--97733557 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
97733490 CAATCACATT
97733500 TTGAATTATTTTATTGAAAACCAACTAA
1 TTGAATTATTTTATTGAAAACCAACTAA
97733528 TTGAATTATTTTATTGAAAACCAACTAA
1 TTGAATTATTTTATTGAAAACCAACTAA
97733556 TT
1 TT
97733558 CAACTACTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (28 bp):
TTGAATTATTTTATTGAAAACCAACTAA
Found at i:97744636 original size:13 final size:13
Alignment explanation
Indices: 97744618--97744680 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
97744608 TTCTCATTGT
97744618 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
*
97744631 TTTTGAAAAATGC
1 TTTTGAAAAGTGC
* ** *
97744644 TCTAAAAAAATGC
1 TTTTGAAAAGTGC
* *
97744657 TTATGAAAAGTGT
1 TTTTGAAAAGTGC
*
97744670 TTTTAAAAAGT
1 TTTTGAAAAGT
97744681 TTAGTTTAAA
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:97744677 original size:26 final size:26
Alignment explanation
Indices: 97744615--97744678 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 26
97744605 AATTTCTCAT
* * *
97744615 TGTTTTTGAAAAGTGCTTTTGAAAAA
1 TGTTTTTAAAAAATGCTTATGAAAAA
* * * *
97744641 TGCTCTAAAAAAATGCTTATGAAAAG
1 TGTTTTTAAAAAATGCTTATGAAAAA
97744667 TGTTTTTAAAAA
1 TGTTTTTAAAAA
97744679 GTTTAGTTTA
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (26 bp):
TGTTTTTAAAAAATGCTTATGAAAAA
Found at i:97744884 original size:20 final size:21
Alignment explanation
Indices: 97744839--97744886 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
97744829 CGTTATTAAT
97744839 ATTTT-AATATATGTAATATA
1 ATTTTAAATATATGTAATATA
* *
97744859 AGTTTTAAATATTTGTAA-GTA
1 A-TTTTAAATATATGTAATATA
97744880 ATTTTAA
1 ATTTTAA
97744887 TTTAAGTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.29
21 7 0.29
22 10 0.42
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (21 bp):
ATTTTAAATATATGTAATATA
Found at i:97750511 original size:16 final size:16
Alignment explanation
Indices: 97750478--97750511 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97750468 ATAAGTTGTT
* *
97750478 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
97750494 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
97750510 AA
1 AA
97750512 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:97753335 original size:21 final size:21
Alignment explanation
Indices: 97753309--97753349 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97753299 AGACGAGCAA
* *
97753309 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
97753330 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
97753350 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:97755286 original size:16 final size:16
Alignment explanation
Indices: 97755253--97755286 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97755243 GGAGATTGTT
* *
97755253 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
97755269 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
97755285 AA
1 AA
97755287 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:97766151 original size:15 final size:15
Alignment explanation
Indices: 97766131--97766161 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
97766121 AAATCAACTC
97766131 AACAATGATAGAAAA
1 AACAATGATAGAAAA
97766146 AACAATGATAGAAAA
1 AACAATGATAGAAAA
97766161 A
1 A
97766162 GCAGTACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.06, G:0.13, T:0.13
Consensus pattern (15 bp):
AACAATGATAGAAAA
Found at i:97767192 original size:69 final size:68
Alignment explanation
Indices: 97767082--97767213 Score: 246
Period size: 69 Copynumber: 1.9 Consensus size: 68
97767072 TAAGAGAAAT
97767082 ATCGCTTTGTATTTGATTAATGTATAAGGATTGTCCATTCCTTGAGTAAAGGGGCAAAATGTGAT
1 ATCGCTTTGTATTTGATTAATGTATAAGGATTGTCCATTCCTTGAGTAAAGGGGCAAAATGTGAT
97767147 CTG
66 CTG
*
97767150 ATCGCTTTGTATTTGATTTAATGTATAAGGATTGTCCATTCCTTGAGTAAAGGGGCAAATTGTG
1 ATCGCTTTGTATTTGA-TTAATGTATAAGGATTGTCCATTCCTTGAGTAAAGGGGCAAAATGTG
97767214 TAACACCCCT
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
68 16 0.26
69 46 0.74
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.38
Consensus pattern (68 bp):
ATCGCTTTGTATTTGATTAATGTATAAGGATTGTCCATTCCTTGAGTAAAGGGGCAAAATGTGAT
CTG
Found at i:97768506 original size:43 final size:43
Alignment explanation
Indices: 97768442--97768595 Score: 265
Period size: 43 Copynumber: 3.6 Consensus size: 43
97768432 CGGCATTACA
* *
97768442 CCTGCTAGGCACGAAGACCCGAATACGCATCA-CTGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCATC-GGCACGAAG
97768485 CCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAG
*
97768528 CCTGCTAGGCACGAATGCCCGAATACACATCATCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAG
97768571 CCTGCTAGGCACGAAGGCCCGAATA
1 CCTGCTAGGCACGAAGGCCCGAATA
97768596 TAATACCAAC
Statistics
Matches: 106, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
43 105 0.99
44 1 0.01
ACGTcount: A:0.30, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAG
Found at i:97768641 original size:38 final size:38
Alignment explanation
Indices: 97768588--97768662 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 38
97768578 GGCACGAAGG
* *
97768588 CCCGAATATAATACCAACACTAGGCCTGCGGGATTTAA
1 CCCGAATATAATACCAACACGAAGCCTGCGGGATTTAA
* * *
97768626 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTA
1 CCCGAATATAATACCAACACGAAGCCTGCGGGATTTA
97768663 TTACAGCACG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAACACGAAGCCTGCGGGATTTAA
Found at i:97768679 original size:26 final size:27
Alignment explanation
Indices: 97768629--97768688 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 27
97768619 GATTTAACCC
* *
97768629 GGATATATTACCAGCACGAAGCCTGCG
1 GGATTTATTACCAGCACGAAACCTGCG
97768656 GGATTTATTA-CAGCACGAAACCTGCG
1 GGATTTATTACCAGCACGAAACCTGCG
*
97768682 GAATTTA
1 GGATTTA
97768689 ACCCGAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 21 0.70
27 9 0.30
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (27 bp):
GGATTTATTACCAGCACGAAACCTGCG
Found at i:97768754 original size:38 final size:38
Alignment explanation
Indices: 97768661--97768746 Score: 113
Period size: 38 Copynumber: 2.3 Consensus size: 38
97768651 CTGCGGGATT
* * *
97768661 TATTA-CAGCACGAAACCTGCGGAATTTAACCCGAATA
1 TATTACCAGCACGAAGCCTACGGGATTTAACCCGAATA
*
97768698 TATTACCAGCACGAAGCCTACGGGATTTAACCCGGATA
1 TATTACCAGCACGAAGCCTACGGGATTTAACCCGAATA
97768736 TAATT-CCAGCA
1 T-ATTACCAGCA
97768747 TATAGCCTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
37 5 0.12
38 35 0.81
39 3 0.07
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (38 bp):
TATTACCAGCACGAAGCCTACGGGATTTAACCCGAATA
Found at i:97773126 original size:25 final size:24
Alignment explanation
Indices: 97773098--97773167 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
97773088 GGAAACTCAT
* *
97773098 AAGAGCCATAATCAGGAAGTTCACA
1 AAGAACCAT-ATCAGGAAGCTCACA
* *
97773123 AAGAACCATATCGGGAAGCTCACG
1 AAGAACCATATCAGGAAGCTCACA
* * *
97773147 AATAGCC-TATTAGGAAGCTCA
1 AAGAACCATATCAGGAAGCTCA
97773168 ATAAGAGCCA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
23 12 0.32
24 17 0.46
25 8 0.22
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.17
Consensus pattern (24 bp):
AAGAACCATATCAGGAAGCTCACA
Found at i:97773145 original size:24 final size:25
Alignment explanation
Indices: 97773098--97773145 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
97773088 GGAAACTCAT
* *
97773098 AAGAGCCATAATCAGGAAGTTCACA
1 AAGAACCATAATCAGGAAGCTCACA
*
97773123 AAGAACCAT-ATCGGGAAGCTCAC
1 AAGAACCATAATCAGGAAGCTCAC
97773146 GAATAGCCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (25 bp):
AAGAACCATAATCAGGAAGCTCACA
Found at i:97780493 original size:21 final size:21
Alignment explanation
Indices: 97780469--97780537 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
97780459 TTATAATATT
97780469 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
97780490 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
97780510 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
97780530 ATTATTAT
1 ATTATTAT
97780538 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:97780550 original size:15 final size:14
Alignment explanation
Indices: 97780524--97780554 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
97780514 TATGGTTTTA
97780524 TATTAGATTATTAT
1 TATTAGATTATTAT
97780538 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
97780553 TA
1 TA
97780555 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:97780893 original size:14 final size:14
Alignment explanation
Indices: 97780869--97780901 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
97780859 AAGAATTAAG
97780869 GAAACAAAGAAACA
1 GAAACAAAGAAACA
97780883 -AAACAAAAGAAACA
1 GAAAC-AAAGAAACA
97780897 GAAAC
1 GAAAC
97780902 GAAGCAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
GAAACAAAGAAACA
Found at i:97781982 original size:21 final size:23
Alignment explanation
Indices: 97781938--97781982 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
97781928 AAATATTCTG
* *
97781938 GGTGTGTTTGGGTTGGACATTCT
1 GGTGTGTTTGGGTGGGACAATCT
97781961 GGTGTGTTTGGG-GGGA-AATCT
1 GGTGTGTTTGGGTGGGACAATCT
97781982 G
1 G
97781983 CGTATCTGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 3 0.15
23 12 0.60
ACGTcount: A:0.11, C:0.07, G:0.44, T:0.38
Consensus pattern (23 bp):
GGTGTGTTTGGGTGGGACAATCT
Found at i:97787820 original size:45 final size:44
Alignment explanation
Indices: 97787755--97787885 Score: 190
Period size: 45 Copynumber: 2.9 Consensus size: 44
97787745 AATATCGTAT
* *
97787755 GATACTAATCGGGCCTTTGAGCCTAACAGGCTATAATGCCGGTGA
1 GATACTAATC-GGCCCTTGAGCCTAGCAGGCTATAATGCCGGTGA
*
97787800 GATACTAATCGGACCCTTGAGCTTAGCAGGCTATAATGCCGGTGA
1 GATACTAATCGG-CCCTTGAGCCTAGCAGGCTATAATGCCGGTGA
* *
97787845 GATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCG
1 GATACTAATCGGCCCTT-GAGCCTAGCAGGCTATAATGCCG
97787886 ATGAAATGAT
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
44 6 0.08
45 72 0.92
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (44 bp):
GATACTAATCGGCCCTTGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:97795974 original size:17 final size:17
Alignment explanation
Indices: 97795933--97795966 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
97795923 AGATAGGCCT
*
97795933 TAAATCTATACATGTAA
1 TAAATATATACATGTAA
97795950 TAAATATATA-ATGTAA
1 TAAATATATACATGTAA
97795966 T
1 T
97795967 TTAATATACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (17 bp):
TAAATATATACATGTAA
Found at i:97797255 original size:32 final size:32
Alignment explanation
Indices: 97797183--97797255 Score: 96
Period size: 32 Copynumber: 2.3 Consensus size: 32
97797173 AAAATAAATA
97797183 TAAAATTAAAACAAATCGAATATTAACAATTG
1 TAAAATTAAAACAAATCGAATATTAACAATTG
* *
97797215 TAACATTAAAACAAAT-TAAT-TTAACAATATG
1 TAAAATTAAAACAAATCGAATATTAACAAT-TG
97797246 TATAAATTAA
1 TA-AAATTAA
97797256 TAATATTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 8 0.22
31 7 0.19
32 21 0.58
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (32 bp):
TAAAATTAAAACAAATCGAATATTAACAATTG
Found at i:97797345 original size:16 final size:18
Alignment explanation
Indices: 97797314--97797349 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
97797304 TGAATTTTTG
97797314 TATTATTTTAATATTAAA
1 TATTATTTTAATATTAAA
97797332 TATT-TTTTAA-ATTAAA
1 TATTATTTTAATATTAAA
97797348 TA
1 TA
97797350 ACATTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 6 0.33
18 4 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTATTTTAATATTAAA
Found at i:97807051 original size:22 final size:22
Alignment explanation
Indices: 97807026--97807068 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
97807016 TATCCAAACA
97807026 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
97807048 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
97807069 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:97807072 original size:11 final size:11
Alignment explanation
Indices: 97807033--97807073 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
97807023 ACAATAACAA
97807033 CAAAATAGTAG
1 CAAAATAGTAG
* *
97807044 CAACATAATAG
1 CAAAATAGTAG
*
97807055 TAAAATAGTAG
1 CAAAATAGTAG
97807066 CAAAATAG
1 CAAAATAG
97807074 GGAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:97807496 original size:29 final size:30
Alignment explanation
Indices: 97807431--97807498 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
97807421 ATAATGTCAT
* * * *
97807431 ATTTGGTACCTGTATTTTTATAAAATTCTA
1 ATTTGGTACCTGTACTTTGATAAAAGTCCA
* *
97807461 ATATGGTACTTGTACTTTGA-AAAAGTCCA
1 ATTTGGTACCTGTACTTTGATAAAAGTCCA
97807490 ATTTGGTAC
1 ATTTGGTAC
97807499 ATGAACTATT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
29 15 0.48
30 16 0.52
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.43
Consensus pattern (30 bp):
ATTTGGTACCTGTACTTTGATAAAAGTCCA
Found at i:97808100 original size:26 final size:27
Alignment explanation
Indices: 97808070--97808129 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
97808060 TGGGTTAAAA
97808070 AAATTTAATTGTTT-TATGGAATTAAT
1 AAATTTAATTGTTTATATGGAATTAAT
* * *
97808096 GAATTTTTATTTTTTATATGGAATTAAT
1 -AAATTTAATTGTTTATATGGAATTAAT
97808124 AAATTT
1 AAATTT
97808130 TTATTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 16 0.57
28 12 0.43
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (27 bp):
AAATTTAATTGTTTATATGGAATTAAT
Found at i:97808116 original size:28 final size:28
Alignment explanation
Indices: 97808084--97808141 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
97808074 TTAATTGTTT
*
97808084 TATGGAATTAATGAATTTTTATTTTTTA
1 TATGGAATTAATAAATTTTTATTTTTTA
97808112 TATGGAATTAATAAATTTTTATTTTTTA
1 TATGGAATTAATAAATTTTTATTTTTTA
97808140 TA
1 TA
97808142 CTTTTTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (28 bp):
TATGGAATTAATAAATTTTTATTTTTTA
Found at i:97808168 original size:20 final size:19
Alignment explanation
Indices: 97808145--97808200 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
97808135 TTTTATACTT
97808145 TTTTATTATATATTTTTTGA
1 TTTT-TTATATATTTTTTGA
*
97808165 TTTTTATATATATTATTTTTA
1 TTTTT-TATATATT-TTTTGA
97808186 -TTTTTATA-ATTTTTT
1 TTTTTTATATATTTTTT
97808201 TAAAATTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
17 4 0.12
18 3 0.09
19 5 0.15
20 16 0.48
21 5 0.15
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTTTATATATTTTTTGA
Found at i:97808193 original size:21 final size:20
Alignment explanation
Indices: 97808144--97808201 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
97808134 TTTTTATACT
97808144 TTTTTATTATATATTTTTTGA
1 TTTTTA-TATATATTTTTTGA
*
97808165 TTTTTATATATATTATTTTTA
1 TTTTTATATATATT-TTTTGA
97808186 TTTTTATA-AT-TTTTTT
1 TTTTTATATATATTTTTT
97808202 AAAATTGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 4 0.11
19 2 0.06
20 10 0.29
21 19 0.54
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTTTATATATATTTTTTGA
Found at i:97816174 original size:20 final size:20
Alignment explanation
Indices: 97816138--97816176 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
97816128 TGAGTTTTTC
*
97816138 TATATTTGAGTATTTAATTT
1 TATATTTGAGTAATTAATTT
97816158 TATATTTG-GATAATTAATT
1 TATATTTGAG-TAATTAATT
97816177 AAATAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (20 bp):
TATATTTGAGTAATTAATTT
Found at i:97816208 original size:66 final size:66
Alignment explanation
Indices: 97816120--97816290 Score: 220
Period size: 66 Copynumber: 2.6 Consensus size: 66
97816110 AAAAATGATA
*
97816120 AATTGGATTGAGTT-TTTCTATATTTGAGTATTTAATTTTATATTTGGATAATTAATTAAATAAT
1 AATTGGATTGAGTTATTT-TATATTTGAGTATTTAATTTTATACTTGGATAATTAATTAAATAAT
97816184 TT
65 TT
* * * * *
97816186 AATTGGATTAAGTTATTTTATATTCGAGTATTTAATTTTATACTTGGATAATTTATTGAGTAATT
1 AATTGGATTGAGTTATTTTATATTTGAGTATTTAATTTTATACTTGGATAATTAATTAAATAATT
97816251 T
66 T
* * * *
97816252 AATTAGG-TTGTGTAATTTTATATTTGAATATTTTATTTT
1 AATT-GGATTGAGTTATTTTATATTTGAGTATTTAATTTT
97816291 TTGGGTTAGT
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
66 86 0.95
67 5 0.05
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.54
Consensus pattern (66 bp):
AATTGGATTGAGTTATTTTATATTTGAGTATTTAATTTTATACTTGGATAATTAATTAAATAATT
T
Found at i:97817409 original size:79 final size:79
Alignment explanation
Indices: 97817276--97817505 Score: 333
Period size: 79 Copynumber: 2.9 Consensus size: 79
97817266 GAGTCACATC
* * * *
97817276 TCATGTAACTGTAGTGAATCAGGATTA-CCTTTTCAGGTCAAATCCTACCCACCTTAAGTTATCA
1 TCATGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCA
* *
97817340 TAAGGATTCATGTA
66 TAAGGAATCATATA
* *
97817354 TCGTGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTATGTTACCA
1 TCATGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCA
*
97817419 TAATGAATCATATA
66 TAAGGAATCATATA
*
97817433 TCATGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCT-T-CGCCTTAAGTTACCA
1 TCATGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCA
97817496 T-AGTGAATCA
66 TAAG-GAATCA
97817506 GGAATAAATT
Statistics
Matches: 137, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
76 1 0.01
77 20 0.15
78 25 0.18
79 91 0.66
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (79 bp):
TCATGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCA
TAAGGAATCATATA
Found at i:97817565 original size:40 final size:40
Alignment explanation
Indices: 97817490--97817565 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
97817480 TCGCCTTAAG
* * ** *
97817490 TTACCATAGTGAATCAGGAATAAATTTTATTCACTTCAAA
1 TTACCATAATGAATCAGGAACAAATCCTATCCACTTCAAA
97817530 TTACCATAATGAATCAGGAACAAATCCTATCCACTT
1 TTACCATAATGAATCAGGAACAAATCCTATCCACTT
97817566 TGAGGTATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (40 bp):
TTACCATAATGAATCAGGAACAAATCCTATCCACTTCAAA
Found at i:97820993 original size:44 final size:44
Alignment explanation
Indices: 97820945--97821033 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
97820935 AAGTAATAGA
97820945 AACAGTACGACAC-ACGAAGTGCCTCATCAACACAAAGTCGAAGT
1 AACAGTACGACACTA-GAAGTGCCTCATCAACACAAAGTCGAAGT
* ** * * *
97820989 AACAGTATGACACTATTAGTGCCTCATCGACTCAAGGTCGAAGT
1 AACAGTACGACACTAGAAGTGCCTCATCAACACAAAGTCGAAGT
97821033 A
1 A
97821034 TCCCTATACA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 37 0.97
45 1 0.03
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (44 bp):
AACAGTACGACACTAGAAGTGCCTCATCAACACAAAGTCGAAGT
Found at i:97822533 original size:2 final size:2
Alignment explanation
Indices: 97822528--97822553 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
97822518 TATTCATATG
97822528 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
97822554 TATATATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:97822638 original size:10 final size:10
Alignment explanation
Indices: 97822625--97822694 Score: 56
Period size: 10 Copynumber: 6.9 Consensus size: 10
97822615 ATTAATTCTT
97822625 ATAATTATTA
1 ATAATTATTA
*
97822635 ATAATTTTTAA
1 ATAATTATT-A
*
97822646 ATAATTTTTA
1 ATAATTATTA
97822656 ATAATTA-TA
1 ATAATTATTA
*
97822665 TATAGTT-TGT-
1 -ATAATTAT-TA
97822675 ATAATTATTTA
1 ATAATTA-TTA
97822686 ATAATTATT
1 ATAATTATT
97822695 TAAAAAAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
9 7 0.14
10 23 0.47
11 19 0.39
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (10 bp):
ATAATTATTA
Found at i:97822689 original size:11 final size:11
Alignment explanation
Indices: 97822625--97822697 Score: 68
Period size: 11 Copynumber: 7.1 Consensus size: 11
97822615 ATTAATTCTT
97822625 ATAATTA-TTA
1 ATAATTATTTA
97822635 ATAATT-TTTAA
1 ATAATTATTT-A
97822646 ATAATT-TTTA
1 ATAATTATTTA
*
97822656 ATAATTATAT-
1 ATAATTATTTA
* *
97822666 ATAGTT-TGT-
1 ATAATTATTTA
97822675 ATAATTATTTA
1 ATAATTATTTA
97822686 ATAATTATTTA
1 ATAATTATTTA
97822697 A
1 A
97822698 AAAAAATCCA
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
9 7 0.13
10 22 0.42
11 24 0.45
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (11 bp):
ATAATTATTTA
Found at i:97823098 original size:20 final size:21
Alignment explanation
Indices: 97823064--97823104 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
97823054 TTTTTTCTTT
*
97823064 TTTTTTTTAATTTCA-TAATA
1 TTTTTTTTAACTTCACTAATA
*
97823084 TTTTTTTTCACTTCACTAATA
1 TTTTTTTTAACTTCACTAATA
97823105 CTTGCTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTTTTTAACTTCACTAATA
Found at i:97824714 original size:20 final size:20
Alignment explanation
Indices: 97824661--97824714 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
97824651 GCTGGAAAGA
*
97824661 AACTAAATTGAGCTCAAATG
1 AACTGAATTGAGCTCAAATG
* * * *
97824681 AGCTTAATTAAGCTCAAGTG
1 AACTGAATTGAGCTCAAATG
*
97824701 AACTGATTTGAGCT
1 AACTGAATTGAGCT
97824715 GATTGGAGCT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (20 bp):
AACTGAATTGAGCTCAAATG
Found at i:97825107 original size:19 final size:20
Alignment explanation
Indices: 97825056--97825107 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 20
97825046 AGTGGTTTCT
97825056 TAAATAATTAT-AAAATATA
1 TAAATAATTATAAAAATATA
*
97825075 TAAATGTATT-TAAAAAT-TA
1 TAAAT-AATTATAAAAATATA
*
97825094 TTAATAATTATAAA
1 TAAATAATTATAAA
97825108 TAATGATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 3 0.11
19 16 0.59
20 8 0.30
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
TAAATAATTATAAAAATATA
Found at i:97825293 original size:11 final size:10
Alignment explanation
Indices: 97825275--97825304 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
97825265 CTTATAAATA
97825275 TTAATAATTT
1 TTAATAATTT
97825285 TTAAATAATTT
1 TT-AATAATTT
97825296 TTAATAATT
1 TTAATAATT
97825305 ATATATAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
TTAATAATTT
Found at i:97825397 original size:30 final size:30
Alignment explanation
Indices: 97825363--97825419 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
97825353 AGAAAAATGA
*
97825363 TTTTCTAGCTCCTTTTAATCTAAACTTCAT
1 TTTTCTAACTCCTTTTAATCTAAACTTCAT
97825393 TTTTCTAACTCCTTTTAATCTAAACTT
1 TTTTCTAACTCCTTTTAATCTAAACTT
97825420 ACTTGTCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.02, T:0.51
Consensus pattern (30 bp):
TTTTCTAACTCCTTTTAATCTAAACTTCAT
Found at i:97825414 original size:15 final size:15
Alignment explanation
Indices: 97825366--97825415 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
97825356 AAAATGATTT
*
97825366 TCTAGCTCCTTTTAA
1 TCTAACTCCTTTTAA
*
97825381 TCTAAACTTCATTTT--
1 TCT-AAC-TCCTTTTAA
97825396 TCTAACTCCTTTTAA
1 TCTAACTCCTTTTAA
97825411 TCTAA
1 TCTAA
97825416 ACTTACTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
13 6 0.21
14 3 0.11
15 11 0.39
16 2 0.07
17 6 0.21
ACGTcount: A:0.26, C:0.24, G:0.02, T:0.48
Consensus pattern (15 bp):
TCTAACTCCTTTTAA
Found at i:97830839 original size:96 final size:97
Alignment explanation
Indices: 97830687--97830890 Score: 229
Period size: 96 Copynumber: 2.1 Consensus size: 97
97830677 TTTTTTAAAT
* * * ** *
97830687 TTTAGGG-TTTTAAGGAAAAAAATAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATTAC
1 TTTAGGGTTTTTAAGGAAAAAAATAAATAAATTAGAGTTCAGGGTTACTTAAGTAAATTAATTA-
** *
97830751 T-AATT-TTAAAAAATTAGATTATGG-TTTAGTG
65 TAAATTAAAAAAAAATTAGATTA-GGATTTAGAG
* * *
97830782 TTTATGGTTTTTAAGG-AAAAAATCAAATAAATTTGAGTTCAGGGTTACTTGAGTAAATTAATTA
1 TTTAGGGTTTTTAAGGAAAAAAAT-AAATAAATTAGAGTTCAGGGTTACTTAAGTAAATTAATTA
97830846 TAAATTAAAAAAAAATTAGATTAGGATTTTAGAG
65 TAAATTAAAAAAAAATTAGATTAGGA-TTTAGAG
97830880 TTTAGGGTTTT
1 TTTAGGGTTTT
97830891 AGGGTATTTA
Statistics
Matches: 90, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
95 14 0.16
96 46 0.51
97 14 0.16
98 16 0.18
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.41
Consensus pattern (97 bp):
TTTAGGGTTTTTAAGGAAAAAAATAAATAAATTAGAGTTCAGGGTTACTTAAGTAAATTAATTAT
AAATTAAAAAAAAATTAGATTAGGATTTAGAG
Found at i:97831206 original size:126 final size:126
Alignment explanation
Indices: 97830977--97831389 Score: 675
Period size: 126 Copynumber: 3.3 Consensus size: 126
97830967 AAAAGTTTCT
*
97830977 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGTAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGTAA
* * *
97831042 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAATTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACACTTCAAGCAGGATGCATTTTCAGCAAAATTACTGAAAGAAGCTCCC
* *
97831103 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTAAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGTAA
*
97831168 ATAGTGGT-AAAAACACTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACACTTCAAGCAGGATGCATTTTCAGCAAAATTACTGAAAGAAGCTCCC
* * * *
97831229 ACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTACATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGTAA
*
97831294 ATAGTGTCAAAAACACTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACACTTCAAGCAGGATGCATTTTCAGCAAAATTACTGAAAGAAGCTCCC
* * *
97831355 ACGTAGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
97831390 TAACTTGGGC
Statistics
Matches: 267, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
125 2 0.01
126 263 0.99
127 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGTAA
ATAGTGTCAAAAACACTTCAAGCAGGATGCATTTTCAGCAAAATTACTGAAAGAAGCTCCC
Found at i:97834503 original size:116 final size:116
Alignment explanation
Indices: 97834328--97834879 Score: 957
Period size: 116 Copynumber: 4.8 Consensus size: 116
97834318 TTTATATTTT
* * *
97834328 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* * *
97834393 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
97834444 ATCATATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
97834509 AAAATATAAAAGTAAATTACAGTTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
97834560 ATTACATGGAATAATATAAAATTATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
97834625 AAAATATAAAATTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
97834676 GTTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
97834741 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
97834792 ATTA-ATGAAATAATATAAAAATATTCAAAATGTTACCTTATTTAAAAT-ATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
97834855 AAAATATAAAAGTAAATTA-AATTAC
66 AAAATATAAAAGTAAATTACAATTAC
97834880 ATGAAATAAT
Statistics
Matches: 415, Mismatches: 21, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
113 6 0.01
114 34 0.08
115 43 0.10
116 332 0.80
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.41
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:97834889 original size:84 final size:86
Alignment explanation
Indices: 97834791--97834965 Score: 311
Period size: 84 Copynumber: 2.1 Consensus size: 86
97834781 CCTTTTATCT
*
97834791 AATTA-ATGAAATAATATAAAAATATTCAAAATGTTACCTTATTTAAAAT-ATTTCCATTTTATT
1 AATTACATGAAATAATATAAAAATATTCAAAATGTTACCTTACTTAAAATAATTTCCATTTTATT
97834854 AAAAATATAAAAGTAAATTA-
66 AAAAATATAAAAGTAAATTAC
*
97834874 AATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTACTTAAAATAATTTCCATTTTATT
1 AATTACATGAAATAATATAAAAATATTCAAAATGTTACCTTACTTAAAATAATTTCCATTTTATT
97834939 AAAAATATAAAAGTAAATTAC
66 AAAAATATAAAAGTAAATTAC
97834960 AATTAC
1 AATTAC
97834966 TTTATTTAAA
Statistics
Matches: 87, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
83 5 0.06
84 42 0.48
85 34 0.39
86 6 0.07
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (86 bp):
AATTACATGAAATAATATAAAAATATTCAAAATGTTACCTTACTTAAAATAATTTCCATTTTATT
AAAAATATAAAAGTAAATTAC
Found at i:97837242 original size:22 final size:22
Alignment explanation
Indices: 97837230--97837279 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 22
97837220 TAACGAGAGT
97837230 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
*
97837252 TTTGAGA-G-ATTTGAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
97837272 TTTGAGAG
1 TTTGAGAG
97837280 AATATTGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 18 0.69
21 1 0.04
22 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.30, T:0.30
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:97837253 original size:11 final size:11
Alignment explanation
Indices: 97837230--97837281 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
97837220 TAACGAGAGT
*
97837230 TTTGAGAGGAA
1 TTTGAGAGAAA
*
97837241 TTTAAGAGAAA
1 TTTGAGAGAAA
97837252 TTTGAGAG--A
1 TTTGAGAGAAA
97837261 TTTGAGAGAAA
1 TTTGAGAGAAA
97837272 TTTGAGAGAA
1 TTTGAGAGAA
97837282 TATTGAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:97837293 original size:31 final size:31
Alignment explanation
Indices: 97837230--97837293 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
97837220 TAACGAGAGT
* *
97837230 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
*
97837261 TTTGAGAGAAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGAAATTTAAGAGAAAT-TTGAAAGA
97837292 TT
1 TT
97837294 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (31 bp):
TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
Found at i:97841476 original size:28 final size:28
Alignment explanation
Indices: 97841425--97841499 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 28
97841415 TAATGTTAAG
*
97841425 ATAACTATATAAAATATTTTAATAAATAAA
1 ATAA-TATATAAAATATTTAAAT-AATAAA
*
97841455 A-AATATATAAAAT-TATTAAATATTAAA
1 ATAATATATAAAATAT-TTAAATAATAAA
97841482 ATAATATAATATAAATAT
1 ATAATAT-ATA-AAATAT
97841500 ACATTTTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
27 7 0.18
28 20 0.53
29 5 0.13
30 5 0.13
31 1 0.03
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.37
Consensus pattern (28 bp):
ATAATATATAAAATATTTAAATAATAAA
Found at i:97849309 original size:7 final size:7
Alignment explanation
Indices: 97849297--97849328 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
97849287 AGTCGATTCA
97849297 TATTTAG
1 TATTTAG
97849304 TATTTAG
1 TATTTAG
97849311 TATTTAG
1 TATTTAG
97849318 TATTTAG
1 TATTTAG
97849325 TATT
1 TATT
97849329 ATGTATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:97849865 original size:30 final size:30
Alignment explanation
Indices: 97849831--97849923 Score: 105
Period size: 30 Copynumber: 3.1 Consensus size: 30
97849821 AACGCGAGCT
* * *
97849831 CATCAATAGCGCCCACACAATTACCAAGCC
1 CATCAACAGCGCCCACAAAATCACCAAGCC
* * *
97849861 CATCAACAGCGCCCATAAAAATCACTAGGCC
1 CATCAACAGCGCCCA-CAAAATCACCAAGCC
* *
97849892 CATCAACAGCGCCCACATAATCACCGAGCC
1 CATCAACAGCGCCCACAAAATCACCAAGCC
97849922 CA
1 CA
97849924 ACACTTCAAC
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
30 26 0.51
31 25 0.49
ACGTcount: A:0.37, C:0.40, G:0.12, T:0.12
Consensus pattern (30 bp):
CATCAACAGCGCCCACAAAATCACCAAGCC
Found at i:97855282 original size:46 final size:46
Alignment explanation
Indices: 97855147--97855282 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
97855137 TTTGACATGA
* * * *
97855147 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAAGT
* *
97855193 TGCCATGGTATCTTTCAAACATGGTCTTATTCATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAAGT
*
97855239 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAA
97855283 TGAGCACACT
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 4 0.05
46 76 0.95
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAAGT
Found at i:97858415 original size:125 final size:126
Alignment explanation
Indices: 97858192--97858440 Score: 428
Period size: 125 Copynumber: 2.0 Consensus size: 126
97858182 GCCAAATAGG
* * * *
97858192 AACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCC
1 AACTACTGTAAAAAAAAAGCGCCCACATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCC
*
97858257 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCATA
66 TGCTTGAAGCGTTTTTGACACAATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCATA
*
97858318 AACTACTGTAAAAAAAAAGCGCCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACA-TGCATCC
1 AACTACTGTAAAAAAAAAGCGCCCACATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCC
*
97858382 TGCTTGAAGCGTTTTTGACACAATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCA
66 TGCTTGAAGCGTTTTTGACACAATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCA
97858441 GATACATCTT
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
125 64 0.55
126 52 0.45
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (126 bp):
AACTACTGTAAAAAAAAAGCGCCCACATGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCC
TGCTTGAAGCGTTTTTGACACAATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCATA
Found at i:97858440 original size:28 final size:28
Alignment explanation
Indices: 97858404--97858468 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
97858394 TTTTGACACA
* *
97858404 ATTTGTTCAGAAACGTCTTCTCAAAATT
1 ATTTTTTCAGAAACATCTTCTCAAAATT
* * *
97858432 ATTTTTTCAGATACATCTTCTCTAATTT
1 ATTTTTTCAGAAACATCTTCTCAAAATT
97858460 ATTTTTTCA
1 ATTTTTTCA
97858469 AAAATTACTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.49
Consensus pattern (28 bp):
ATTTTTTCAGAAACATCTTCTCAAAATT
Found at i:97859640 original size:18 final size:20
Alignment explanation
Indices: 97859617--97859661 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
97859607 ATAAAAAATT
97859617 ATAAATAT-TT-TTT-TATGA
1 ATAAATATGTTATTTGTAT-A
97859635 ATAAATATGTTATTTGTATA
1 ATAAATATGTTATTTGTATA
97859655 ATAAATA
1 ATAAATA
97859662 GCATGGACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.33
19 2 0.08
20 11 0.46
21 3 0.12
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (20 bp):
ATAAATATGTTATTTGTATA
Found at i:97859882 original size:17 final size:17
Alignment explanation
Indices: 97859826--97859884 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
97859816 GATATTTTTG
*
97859826 TTATAATTTTATAAAAT
1 TTATAATTTTTTAAAAT
* *
97859843 ATATAAATTATTTTTATAA-
1 TTAT-AA-T-TTTTTAAAAT
97859862 -TATAATTTTTTAAAAT
1 TTATAATTTTTTAAAAT
97859878 TTATAAT
1 TTATAAT
97859885 ATAATTTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
15 8 0.24
16 1 0.03
17 11 0.33
18 5 0.15
19 1 0.03
20 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TTATAATTTTTTAAAAT
Found at i:97867660 original size:18 final size:17
Alignment explanation
Indices: 97867618--97867660 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
97867608 GTTTTAAGTT
*
97867618 TATAATATTTTATATTA
1 TATAATTTTTTATATTA
* *
97867635 TGTTATTTTTATATATTA
1 TATAATTTTT-TATATTA
97867653 TATAATTT
1 TATAATTT
97867661 AGAACATATT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TATAATTTTTTATATTA
Found at i:97871696 original size:2 final size:2
Alignment explanation
Indices: 97871689--97871723 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
97871679 TGTTCTGAGA
97871689 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97871724 AGCTTTTAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:97872025 original size:14 final size:13
Alignment explanation
Indices: 97872006--97872040 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
97871996 AATTGTGGAT
97872006 ATTAAAATAAAAC
1 ATTAAAATAAAAC
*
97872019 ATATAAAAAAAAAC
1 AT-TAAAATAAAAC
97872033 ATTAAAAT
1 ATTAAAAT
97872041 GATAGATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (13 bp):
ATTAAAATAAAAC
Found at i:97872439 original size:18 final size:17
Alignment explanation
Indices: 97872398--97872440 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
97872388 AAATTTCTCA
97872398 AATTAT-TAACATATTT
1 AATTATATAACATATTT
*
97872414 AATGATATAACATCATTT
1 AATTATATAACAT-ATTT
*
97872432 TATTATATA
1 AATTATATA
97872441 TTGCTAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 5 0.23
17 6 0.27
18 11 0.50
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (17 bp):
AATTATATAACATATTT
Found at i:97872967 original size:5 final size:5
Alignment explanation
Indices: 97872957--97872986 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
97872947 TACTTACATA
*
97872957 AATAT AATAT AGTAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT
97872987 CCCTAAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:97881699 original size:15 final size:15
Alignment explanation
Indices: 97881668--97881710 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 15
97881658 ATAAATATTT
97881668 TATATAAATATAATAAA
1 TATATAAA-A-AATAAA
97881685 -ATATCAAAAAATAAA
1 TATAT-AAAAAATAAA
97881700 TATATAAAAAA
1 TATATAAAAAA
97881711 GGACATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 12 0.50
16 9 0.38
17 3 0.12
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (15 bp):
TATATAAAAAATAAA
Found at i:97888115 original size:24 final size:24
Alignment explanation
Indices: 97888079--97888137 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
97888069 ATTGATAGTG
* *
97888079 TAATTCATGAAGCTCATACATTGA
1 TAATACATCAAGCTCATACATTGA
*
97888103 TAATACATCAAGCTCATGCATTGA
1 TAATACATCAAGCTCATACATTGA
97888127 TAATACATCAA
1 TAATACATCAA
97888138 ATATAATCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (24 bp):
TAATACATCAAGCTCATACATTGA
Found at i:97890396 original size:18 final size:18
Alignment explanation
Indices: 97890350--97890441 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
97890340 TACGACCGTT
97890350 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
97890368 TAC-GCACTATTCACGTA
1 TACGGTACTATTCACGTA
97890385 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
97890403 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
97890421 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
97890439 TAC
1 TAC
97890442 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
17 16 0.24
18 52 0.76
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:97890418 original size:36 final size:35
Alignment explanation
Indices: 97890350--97890441 Score: 166
Period size: 36 Copynumber: 2.6 Consensus size: 35
97890340 TACGACCGTT
97890350 TACGGTACTATTCACGTATACGCACTATTCACGTA
1 TACGGTACTATTCACGTATACGCACTATTCACGTA
97890385 TACGGTACTATTCACGTATACGGCACTATTCACGTA
1 TACGGTACTATTCACGTATAC-GCACTATTCACGTA
*
97890421 TACGGTACTGTTCACGTATAC
1 TACGGTACTATTCACGTATAC
97890442 AGTAGTTGGG
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 21 0.38
36 34 0.62
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (35 bp):
TACGGTACTATTCACGTATACGCACTATTCACGTA
Found at i:97899410 original size:13 final size:13
Alignment explanation
Indices: 97899389--97899439 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
97899379 TTAACAATGC
97899389 TTTTAAAAAATAT
1 TTTTAAAAAATAT
* *
97899402 TTTTGAAAAGTA-
1 TTTTAAAAAATAT
*
97899414 TTGTAAAAAATTAT
1 TTTTAAAAAA-TAT
97899428 TTTTGAAAAAAT
1 TTTT-AAAAAAT
97899440 TTAAATGTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
12 7 0.24
13 12 0.41
14 4 0.14
15 6 0.21
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (13 bp):
TTTTAAAAAATAT
Found at i:97901541 original size:17 final size:17
Alignment explanation
Indices: 97901521--97901554 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97901511 AGGTTTAGGT
97901521 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
97901538 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
97901555 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:97916286 original size:21 final size:21
Alignment explanation
Indices: 97916261--97916306 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
97916251 CTGCACCAGC
* *
97916261 TTCTTCAGATTTTTCTTCTGT
1 TTCTTCAGATTCTGCTTCTGT
* *
97916282 TTCTTCTGCTTCTGCTTCTGT
1 TTCTTCAGATTCTGCTTCTGT
97916303 TTCT
1 TTCT
97916307 GCTTCTGCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.04, C:0.24, G:0.11, T:0.61
Consensus pattern (21 bp):
TTCTTCAGATTCTGCTTCTGT
Found at i:97916293 original size:6 final size:6
Alignment explanation
Indices: 97916284--97916319 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
97916274 TCTTCTGTTT
*
97916284 CTTCTG CTTCTG CTTCTG TTTCTG CTTCTG CTTCTG
1 CTTCTG CTTCTG CTTCTG CTTCTG CTTCTG CTTCTG
97916320 GTTTCGCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.31, G:0.17, T:0.53
Consensus pattern (6 bp):
CTTCTG
Found at i:97916306 original size:18 final size:19
Alignment explanation
Indices: 97916285--97916324 Score: 73
Period size: 18 Copynumber: 2.2 Consensus size: 19
97916275 CTTCTGTTTC
97916285 TTCTGCTTCTGCTTCT-GT
1 TTCTGCTTCTGCTTCTGGT
97916303 TTCTGCTTCTGCTTCTGGT
1 TTCTGCTTCTGCTTCTGGT
97916322 TTC
1 TTC
97916325 GCATCATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.00, C:0.28, G:0.17, T:0.55
Consensus pattern (19 bp):
TTCTGCTTCTGCTTCTGGT
Found at i:97920960 original size:17 final size:19
Alignment explanation
Indices: 97920928--97920974 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
97920918 AGCAAATGCC
*
97920928 TATAAAATAGTAACAA-AAT
1 TATACAATA-TAACAAGAAT
*
97920947 TA-ACAATATAACAAGAGT
1 TATACAATATAACAAGAAT
97920965 TATACAATAT
1 TATACAATAT
97920975 CCAAATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 6 0.25
18 9 0.38
19 9 0.38
ACGTcount: A:0.57, C:0.09, G:0.06, T:0.28
Consensus pattern (19 bp):
TATACAATATAACAAGAAT
Found at i:97923912 original size:10 final size:10
Alignment explanation
Indices: 97923897--97923928 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
97923887 AATATGTTAA
97923897 TTTTAATTTT
1 TTTTAATTTT
*
97923907 TTTTAAATTT
1 TTTTAATTTT
97923917 TTTTAATTTT
1 TTTTAATTTT
97923927 TT
1 TT
97923929 AATAAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTAATTTT
Found at i:97924490 original size:27 final size:26
Alignment explanation
Indices: 97924452--97924511 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 26
97924442 AATTTTAAAA
97924452 TTTATAAAAATAAAAAATATAAATATT
1 TTTATAAAAATAAAAAAT-TAAATATT
* *
97924479 TTTA-AAATAATATACAATTAAAT-TT
1 TTTATAAA-AATAAAAAATTAAATATT
*
97924504 TTTTTAAA
1 TTTATAAA
97924512 CAATTTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 5 0.18
26 11 0.39
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TTTATAAAAATAAAAAATTAAATATT
Found at i:97927714 original size:17 final size:17
Alignment explanation
Indices: 97927692--97927725 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97927682 ATCCACTAAT
*
97927692 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
97927709 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
97927726 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:97932342 original size:17 final size:17
Alignment explanation
Indices: 97932320--97932353 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97932310 ATCCACTAAT
*
97932320 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
97932337 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
97932354 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:97941455 original size:32 final size:32
Alignment explanation
Indices: 97941419--97941482 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
97941409 AATAACTATT
97941419 TTCAGTCATATATATGTTGATCAAAGATTTAC
1 TTCAGTCATATATATGTTGATCAAAGATTTAC
97941451 TTCAGTCATATATATGTTGATCAAAGATTTAC
1 TTCAGTCATATATATGTTGATCAAAGATTTAC
97941483 ATCAATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (32 bp):
TTCAGTCATATATATGTTGATCAAAGATTTAC
Found at i:97947241 original size:18 final size:19
Alignment explanation
Indices: 97947207--97947244 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
97947197 CGTTGAAGAA
97947207 ATGAGACAAGAGCTGAATT
1 ATGAGACAAGAGCTGAATT
97947226 ATGAGA-AAGA-CATGAATT
1 ATGAGACAAGAGC-TGAATT
97947244 A
1 A
97947245 CAATCTTCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.06
18 11 0.61
19 6 0.33
ACGTcount: A:0.47, C:0.08, G:0.24, T:0.21
Consensus pattern (19 bp):
ATGAGACAAGAGCTGAATT
Found at i:97953692 original size:3 final size:3
Alignment explanation
Indices: 97953671--97953709 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
97953661 AATTAAAAGG
* *
97953671 ATA ATA ACA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
97953710 GGACTAGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:97955271 original size:44 final size:44
Alignment explanation
Indices: 97955210--97955408 Score: 128
Period size: 44 Copynumber: 4.7 Consensus size: 44
97955200 ATCTACTCTG
* * * *
97955210 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGATCCTTTACTTCAATCCGCTCCA
* ** * * * *
97955254 CTGTAACTTCAGGGAGATAGGATAGTGT-CTTCGATCTGCTCCG
1 CTGTAACTTCAGGGAGATAAGATCCTTTACTTCAATCCGCTCCA
** *
97955297 CTGTAA-TCTCAGGGAGATAAGAT-CTCTGGCTTCAATCTGCTCCA
1 CTGTAACT-TCAGGGAGATAAGATCCT-TTACTTCAATCCGCTCCA
* * * * * *
97955341 CTGTAACCTCAGGGAGATAA-AACC-TGA-TGT-GATCCTCTCTA
1 CTGTAACTTCAGGGAGATAAGATCCTTTACT-TCAATCCGCTCCA
97955382 CTGTAACTTCA--GAGATAAGATCCTTTA
1 CTGTAACTTCAGGGAGATAAGATCCTTTA
97955409 ATCCGCTCCA
Statistics
Matches: 120, Mismatches: 27, Indels: 19
0.72 0.16 0.11
Matches are distributed among these distances:
39 7 0.06
40 3 0.03
41 20 0.17
42 5 0.04
43 31 0.26
44 54 0.45
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
CTGTAACTTCAGGGAGATAAGATCCTTTACTTCAATCCGCTCCA
Found at i:97955309 original size:43 final size:43
Alignment explanation
Indices: 97955243--97955360 Score: 139
Period size: 44 Copynumber: 2.7 Consensus size: 43
97955233 CCTTTATTTT
* * * *
97955243 AATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCACTGGCTTC
* * *
97955286 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCACTGGCTTC
97955330 AATCTGCTCCACTGTAACCTCAGGGAGATAA
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAA
97955361 AACCTGATGT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
43 28 0.44
44 35 0.56
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (43 bp):
AATCTGCTCCACTGTAACTCAGGGAGATAAGATCACTGGCTTC
Found at i:97955314 original size:87 final size:84
Alignment explanation
Indices: 97955164--97955486 Score: 233
Period size: 87 Copynumber: 3.9 Consensus size: 84
97955154 TTTAAGTCTA
* * * * * * * *
97955164 CTCCACTGTAA-TATCAGGGAGATAAGA-CCTG-ATGCGATCTACTCTGCTGTAACCTCAGAGAG
1 CTCCACTGTAACT-TCAGGGAGATAGGATACTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAG
97955226 ATAAGATCCTTTATTTTAATCCG
65 ATAAGATCC--T-TTTTAATCCG
*
97955249 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
1 CTCCACTGTAACTTCAGGGAGATAGGATACTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
* * *
97955314 TAAGATCTCTGGCTTCAATCTG
66 TAAGATC-CT--TTTTAATCCG
* * * **
97955336 CTCCACTGTAACCTCAGGGAGATA--AAACCTGAT-GT-GATCCT-CTCTACTGTAA-CTTCA--
1 CTCCACTGTAACTTCAGGGAGATAGGATA-CTG-TCTTCGAT-CTGCTCCGCTGTAATC-TCAGG
97955393 GAGATAAGATCC--TTTAATCCG
62 GAGATAAGATCCTTTTTAATCCG
* * * *
97955414 CTCCATTGTAA-TCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGA
1 CTCCACTGTAACT-TCAGGGAGATAGGA-TACTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGA
*
97955478 GACAAGATC
64 GATAAGATC
97955487 TGAAATTCTT
Statistics
Matches: 189, Mismatches: 30, Indels: 40
0.73 0.12 0.15
Matches are distributed among these distances:
78 27 0.14
79 1 0.01
80 6 0.03
81 16 0.08
82 2 0.01
83 21 0.11
84 1 0.01
85 41 0.22
86 9 0.05
87 64 0.34
88 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (84 bp):
CTCCACTGTAACTTCAGGGAGATAGGATACTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATCCTTTTTAATCCG
Found at i:97955479 original size:44 final size:46
Alignment explanation
Indices: 97955404--97955530 Score: 134
Period size: 46 Copynumber: 2.8 Consensus size: 46
97955394 AGATAAGATC
* * * * * *
97955404 CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-T--ACTAT
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAAT-T
* *
97955448 CTTTGATCTGCTCCGCTGTAATCTCAGGGAGACAAGATCTGAAATT
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATT
* *
97955494 CTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGA
97955531 CCTGTATTAT
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 31 0.46
45 1 0.01
46 34 0.50
47 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (46 bp):
CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATT
Found at i:97968318 original size:3 final size:3
Alignment explanation
Indices: 97968297--97968332 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
97968287 AATTAAAAGG
* *
97968297 ATA ATA ACA ATA ATG ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
97968333 GGACTAGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:97975339 original size:19 final size:19
Alignment explanation
Indices: 97975315--97975354 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
97975305 ACAAATAAAT
* *
97975315 AAAATTCATAATTTTTTTA
1 AAAATTAATAATTTTATTA
97975334 AAAATTAATAATTTTATTA
1 AAAATTAATAATTTTATTA
97975353 AA
1 AA
97975355 CCAGTTCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
AAAATTAATAATTTTATTA
Found at i:97976859 original size:21 final size:20
Alignment explanation
Indices: 97976811--97976859 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
97976801 TGGATATTAT
* *
97976811 TTTTAATAATTTTTAAATAAT
1 TTTT-ATAAATTTTAAATAAA
97976832 TTCTTATAAATTTTAAATAAAA
1 TT-TTATAAATTTTAAAT-AAA
97976854 TTTTAT
1 TTTTAT
97976860 TAACTTTTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTATAAATTTTAAATAAA
Found at i:97978825 original size:7 final size:6
Alignment explanation
Indices: 97978798--97978823 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
97978788 TATTATTATA
97978798 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
97978824 TAATGATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:97979815 original size:12 final size:12
Alignment explanation
Indices: 97979765--97979830 Score: 62
Period size: 12 Copynumber: 5.5 Consensus size: 12
97979755 TTGATAATCA
*
97979765 TTTCCTTTCATC
1 TTTCTTTTCATC
* *
97979777 CTTCTTTTCGTC
1 TTTCTTTTCATC
*
97979789 TTTCTTTTCACC
1 TTTCTTTTCATC
* *
97979801 TTTCTTATCGTC
1 TTTCTTTTCATC
97979813 TTT-TTTGTCATC
1 TTTCTTT-TCATC
97979825 TTTCTT
1 TTTCTT
97979831 CTCTTCTTTA
Statistics
Matches: 41, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
11 2 0.05
12 37 0.90
13 2 0.05
ACGTcount: A:0.06, C:0.27, G:0.05, T:0.62
Consensus pattern (12 bp):
TTTCTTTTCATC
Found at i:97979827 original size:24 final size:24
Alignment explanation
Indices: 97979765--97979839 Score: 80
Period size: 24 Copynumber: 3.1 Consensus size: 24
97979755 TTGATAATCA
* * *
97979765 TTTCCTTTCATCCTTCTTTTCGTC
1 TTTCTTTTCATCTTTCTTATCGTC
*
97979789 TTTCTTTTCACCTTTCTTATCGTC
1 TTTCTTTTCATCTTTCTTATCGTC
* *
97979813 TTT-TTTGTCATCTTTCTTCTCTTC
1 TTTCTTT-TCATCTTTCTTATCGTC
97979837 TTT
1 TTT
97979840 AGCAGGTCCC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
23 3 0.07
24 40 0.93
ACGTcount: A:0.05, C:0.28, G:0.04, T:0.63
Consensus pattern (24 bp):
TTTCTTTTCATCTTTCTTATCGTC
Found at i:97986693 original size:35 final size:35
Alignment explanation
Indices: 97986647--97986716 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
97986637 TTATAGACAG
97986647 AATGCGTTCTCTTGTTGCTAATGGTTTACCACTTT
1 AATGCGTTCTCTTGTTGCTAATGGTTTACCACTTT
97986682 AATGCGTTCTCTTGTTGCTAATGGTTTACCACTTT
1 AATGCGTTCTCTTGTTGCTAATGGTTTACCACTTT
97986717 TACTTTCTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (35 bp):
AATGCGTTCTCTTGTTGCTAATGGTTTACCACTTT
Found at i:97990619 original size:16 final size:16
Alignment explanation
Indices: 97990598--97990628 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
97990588 CTCTAGGATC
97990598 AGTTTTGACAGCTGTT
1 AGTTTTGACAGCTGTT
97990614 AGTTTTGACAGCTGT
1 AGTTTTGACAGCTGT
97990629 ATACTAACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.26, T:0.42
Consensus pattern (16 bp):
AGTTTTGACAGCTGTT
Found at i:97992564 original size:20 final size:20
Alignment explanation
Indices: 97992522--97992565 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
97992512 AAAAACTTTG
*
97992522 AATTATTTTCATAAAAAATA
1 AATTATTTTCAGAAAAAATA
*
97992542 AATTATTTTGAGAAAGAAA-A
1 AATTATTTTCAGAAA-AAATA
97992562 AATT
1 AATT
97992566 GGGTTTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (20 bp):
AATTATTTTCAGAAAAAATA
Found at i:97993232 original size:12 final size:12
Alignment explanation
Indices: 97993203--97993266 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 12
97993193 TATAATCATT
97993203 TCTTT-TTTTCA
1 TCTTTCTTTTCA
* * **
97993214 CCCTTCTTTTTG
1 TCTTTCTTTTCA
97993226 TCTTTCTTTTCA
1 TCTTTCTTTTCA
*
97993238 TCTTTC--TT-G
1 TCTTTCTTTTCA
97993247 TCTTTCTTTTCA
1 TCTTTCTTTTCA
97993259 TCTTTCTT
1 TCTTTCTT
97993267 CTCTTCTTTA
Statistics
Matches: 39, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
9 6 0.15
10 2 0.05
11 5 0.13
12 26 0.67
ACGTcount: A:0.05, C:0.25, G:0.03, T:0.67
Consensus pattern (12 bp):
TCTTTCTTTTCA
Done.