Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 303 of 311
Found at i:98744137 original size:15 final size:15
Alignment explanation
Indices: 98744104--98744143 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
98744094 GAAAAAAAAA
98744104 TTAATTATTAGTATAT
1 TTAATT-TTAGTATAT
98744120 TTATATTTTAGT-TAT
1 TTA-ATTTTAGTATAT
98744135 TTAATTTTA
1 TTAATTTTA
98744144 AAAATTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.26
15 6 0.26
16 8 0.35
17 3 0.13
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (15 bp):
TTAATTTTAGTATAT
Found at i:98744218 original size:31 final size:31
Alignment explanation
Indices: 98744161--98744221 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
98744151 TAAAATAATT
* **
98744161 ATTTAATTATTTAAAATTTTTCATTTAAATC
1 ATTTAATTATTAAAAAAATTTCATTTAAATC
98744192 ATTTAATTATGTAAAAAAATTT-ATTTAAAT
1 ATTTAATTAT-TAAAAAAATTTCATTTAAAT
98744222 TATTGAGCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 18 0.69
32 8 0.31
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (31 bp):
ATTTAATTATTAAAAAAATTTCATTTAAATC
Found at i:98746773 original size:103 final size:103
Alignment explanation
Indices: 98746653--98746921 Score: 520
Period size: 103 Copynumber: 2.6 Consensus size: 103
98746643 TACAAATGAA
98746653 GAAAAACTCGAGCAGCAAGGAAAAGAACTTAAAATGGATGCTTGAAGAATATATAATGCAAATGA
1 GAAAAACTCGAGCAGCAAGGAAAAGAACTTAAAATGGATGCTTGAAGAATATATAATGCAAATGA
98746718 ATACAATAAATACTCCATTTCCCCTAAAATGGATGCTT
66 ATACAATAAATACTCCATTTCCCCTAAAATGGATGCTT
*
98746756 GAAAAACTCGAGCAGCAAGGAGAAGAACTTAAAATGGATGCTTGAAGAATATATAATGCAAATGA
1 GAAAAACTCGAGCAGCAAGGAAAAGAACTTAAAATGGATGCTTGAAGAATATATAATGCAAATGA
98746821 ATACAATAAATACTCCATTTCCCCTAAAATGGATGCTT
66 ATACAATAAATACTCCATTTCCCCTAAAATGGATGCTT
*
98746859 GAAAAACTCGAGCAGCAAGGAAAAGAACTTAAAATGGATGCTTGCAGAATATATAATGCAAAT
1 GAAAAACTCGAGCAGCAAGGAAAAGAACTTAAAATGGATGCTTGAAGAATATATAATGCAAAT
98746922 AGCAACTCGC
Statistics
Matches: 163, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 163 1.00
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.22
Consensus pattern (103 bp):
GAAAAACTCGAGCAGCAAGGAAAAGAACTTAAAATGGATGCTTGAAGAATATATAATGCAAATGA
ATACAATAAATACTCCATTTCCCCTAAAATGGATGCTT
Found at i:98750708 original size:22 final size:24
Alignment explanation
Indices: 98750666--98750713 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 24
98750656 AGTCCCTGAT
*
98750666 ATTTATATTTTTTTATTAAATTAA
1 ATTTATATTTTTTTATAAAATTAA
98750690 ATTT-TATTTTTTT-TAAAATTAA
1 ATTTATATTTTTTTATAAAATTAA
98750712 AT
1 AT
98750714 ATGTTCTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.43
23 9 0.39
24 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
ATTTATATTTTTTTATAAAATTAA
Found at i:98752740 original size:13 final size:13
Alignment explanation
Indices: 98752722--98752747 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98752712 TAAATATATT
98752722 ATAAAAAAATAAG
1 ATAAAAAAATAAG
98752735 ATAAAAAAATAAG
1 ATAAAAAAATAAG
98752748 TGTTTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (13 bp):
ATAAAAAAATAAG
Found at i:98757604 original size:49 final size:49
Alignment explanation
Indices: 98757524--98757617 Score: 129
Period size: 49 Copynumber: 1.9 Consensus size: 49
98757514 AGGGAATTCT
* * *
98757524 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCATTTTTTACG
98757573 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCATTTTT
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCATTTTT
98757618 AAGCCAAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
48 2 0.05
49 38 0.95
ACGTcount: A:0.19, C:0.13, G:0.27, T:0.41
Consensus pattern (49 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCATTTTTTACG
Found at i:98760121 original size:49 final size:49
Alignment explanation
Indices: 98760041--98760134 Score: 129
Period size: 49 Copynumber: 1.9 Consensus size: 49
98760031 AGGGAATTCT
* * *
98760041 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCATTTTTTACG
98760090 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCATTTTT
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCATTTTT
98760135 AAGCCAAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
48 2 0.05
49 38 0.95
ACGTcount: A:0.19, C:0.13, G:0.27, T:0.41
Consensus pattern (49 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCATTTTTTACG
Found at i:98761832 original size:4 final size:4
Alignment explanation
Indices: 98761823--98761847 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
98761813 AAAAAATGTA
98761823 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
98761848 GAATGTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:98761943 original size:58 final size:59
Alignment explanation
Indices: 98761881--98761995 Score: 137
Period size: 58 Copynumber: 2.0 Consensus size: 59
98761871 AACATATATA
* * *
98761881 AGAAAAATAATAAT-GAAAATAATATTAATATATAAATAGAAA-TAAA-AATATAATAAAT
1 AGAAAAATAATAATAGAAAA-AATATAAATAGATAAATAAAAATTAAATAA-ATAATAAAT
* * *
98761939 AGAAATATAATAATAGTAGAAATATAAATAGATAAATAAAAATTAAATAAATAATAA
1 AGAAAAATAATAATAGAAAAAATATAAATAGATAAATAAAAATTAAATAAATAATAA
98761996 TATTATTAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
58 32 0.67
59 14 0.29
60 2 0.04
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (59 bp):
AGAAAAATAATAATAGAAAAAATATAAATAGATAAATAAAAATTAAATAAATAATAAAT
Found at i:98761944 original size:15 final size:15
Alignment explanation
Indices: 98761920--98761965 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
98761910 ATATAAATAG
*
98761920 AAATAAAAATATAAT
1 AAATAGAAATATAAT
98761935 AAATAGAAATATAAT
1 AAATAGAAATATAAT
98761950 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
98761966 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:98761953 original size:29 final size:31
Alignment explanation
Indices: 98761876--98761953 Score: 74
Period size: 29 Copynumber: 2.6 Consensus size: 31
98761866 TAAAAAACAT
* * *
98761876 ATATAAGAAAAATAATAATGAAAATAATATTA
1 ATAT-AGAAATATAATAATAAAAATAATAATA
* *
98761908 ATATATAAATA-GA-AATAAAAAT-ATAATA
1 ATATAGAAATATAATAATAAAAATAATAATA
98761936 A-ATAGAAATATAATAATA
1 ATATAGAAATATAATAATA
98761954 GTAGAAATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
27 8 0.22
28 7 0.19
29 12 0.32
30 1 0.03
31 5 0.14
32 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (31 bp):
ATATAGAAATATAATAATAAAAATAATAATA
Found at i:98761998 original size:52 final size:49
Alignment explanation
Indices: 98761885--98762042 Score: 142
Period size: 52 Copynumber: 3.2 Consensus size: 49
98761875 TATATAAGAA
* * *
98761885 AAATAATAATGAAAATAATATTAATATATAAATAGAAATAAAAATATAAT
1 AAATAATAAT-ATAATAATAGTAAAATATAAATAGAAATAAAAATATAAT
98761935 AAATAGA-AATATAATAATAGTAGAAATATAAATAGATAAATAAAAAT-TAAAT
1 AAATA-ATAATATAATAATAGTA-AAATATAAATAG--AAATAAAAATAT-AAT
* * * * * * * *
98761987 AAATAATAATATTATTAGAATAAAAAATAAATATAAATAGAAACATAAT
1 AAATAATAATATAATAATAGTAAAATATAAATAGAAATAAAAATATAAT
98762036 -AATAATA
1 AAATAATA
98762043 GCAATAATAT
Statistics
Matches: 90, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
48 7 0.08
49 21 0.23
50 20 0.22
51 13 0.14
52 29 0.32
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.28
Consensus pattern (49 bp):
AAATAATAATATAATAATAGTAAAATATAAATAGAAATAAAAATATAAT
Found at i:98762040 original size:18 final size:16
Alignment explanation
Indices: 98761920--98762040 Score: 70
Period size: 18 Copynumber: 7.1 Consensus size: 16
98761910 ATATAAATAG
98761920 AAATAAAAAT-ATAAT
1 AAATAAAAATAATAAT
98761935 AAATAGAAATATAATAAT
1 AAATA-AAA-ATAATAAT
*
98761953 -AGTAGAAATATAAATAGAT
1 AAATA-AAA-AT-AATA-AT
*
98761972 AAATAAAAATTA-AAT
1 AAATAAAAATAATAAT
* * *
98761987 AAATAATAATATTATT
1 AAATAAAAATAATAAT
98762003 AGAATAAAAAATAA-ATAT
1 A-AAT-AAAAATAATA-AT
98762021 AAATAGAAACATAATAAT
1 AAATA-AAA-ATAATAAT
98762039 AA
1 AA
98762041 TAGCAATAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 23
0.72 0.09 0.20
Matches are distributed among these distances:
15 16 0.19
16 8 0.10
17 23 0.28
18 27 0.33
19 6 0.07
20 3 0.04
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.27
Consensus pattern (16 bp):
AAATAAAAATAATAAT
Found at i:98763224 original size:16 final size:17
Alignment explanation
Indices: 98763184--98763227 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
98763174 TTATGTCGGG
*
98763184 TTGAATT-ATTTTAGAT
1 TTGAATTAATTTTAGAA
98763200 TTGAATTAATTTTA-AA
1 TTGAATTAATTTTAGAA
98763216 TTGAATTAATTT
1 TTGAATTAATTT
98763228 CGAGTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 20 0.77
17 6 0.23
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (17 bp):
TTGAATTAATTTTAGAA
Found at i:98763251 original size:16 final size:17
Alignment explanation
Indices: 98763219--98763252 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
98763209 TTTTAAATTG
*
98763219 AATTAATTTCGAGTTTA
1 AATTAATTTCAAGTTTA
98763236 AATTAATTT-AAGTTTA
1 AATTAATTTCAAGTTTA
98763252 A
1 A
98763253 GTTACAGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (17 bp):
AATTAATTTCAAGTTTA
Found at i:98763255 original size:22 final size:21
Alignment explanation
Indices: 98763205--98763255 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
98763195 TAGATTTGAA
*
98763205 TTAATTTTAAATTGAATTAAT
1 TTAAGTTTAAATTGAATTAAT
*
98763226 TTCGAGTTTAAATT-AATTTAAGT
1 TT-AAGTTTAAATTGAA-TTAA-T
98763249 TTAAGTT
1 TTAAGTT
98763256 ACAGTATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 4 0.17
22 17 0.71
23 3 0.12
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (21 bp):
TTAAGTTTAAATTGAATTAAT
Found at i:98763566 original size:23 final size:25
Alignment explanation
Indices: 98763539--98763593 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
98763529 AATATTTACG
*
98763539 AAGTTAAGTG-AGTG-ATTAATTTA
1 AAGTTAAGTGAAGTGAATTAACTTA
98763562 AAGTTTAA-TGAAGTGAATTAACTTA
1 AAG-TTAAGTGAAGTGAATTAACTTA
98763587 AA-TTAAG
1 AAGTTAAG
98763594 GATAATTAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
23 9 0.33
24 8 0.30
25 10 0.37
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (25 bp):
AAGTTAAGTGAAGTGAATTAACTTA
Found at i:98763998 original size:22 final size:21
Alignment explanation
Indices: 98763960--98764000 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
98763950 TAAATAAATA
*
98763960 AAAGAAATGAAAAAGAGAAAC
1 AAAGAAACGAAAAAGAGAAAC
*
98763981 AAAGAAAACGAAATAGAGAA
1 AAAG-AAACGAAAAAGAGAA
98764001 GAACAGGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.71, C:0.05, G:0.20, T:0.05
Consensus pattern (21 bp):
AAAGAAACGAAAAAGAGAAAC
Found at i:98766884 original size:15 final size:14
Alignment explanation
Indices: 98766862--98766900 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
98766852 CATAAGTTGA
98766862 GAAA-TTAAGTATT
1 GAAATTTAAGTATT
*
98766875 GAAAATTTAACTATT
1 G-AAATTTAAGTATT
98766890 GAAATTTAAGT
1 GAAATTTAAGT
98766901 TATAAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 1 0.05
14 12 0.55
15 9 0.41
ACGTcount: A:0.46, C:0.03, G:0.13, T:0.38
Consensus pattern (14 bp):
GAAATTTAAGTATT
Found at i:98782759 original size:45 final size:45
Alignment explanation
Indices: 98782708--98782971 Score: 411
Period size: 45 Copynumber: 5.9 Consensus size: 45
98782698 TCGACCATGG
* * * * *
98782708 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
98782753 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
98782798 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
98782843 TGCTTCCTCAAATTCTTCCATGGATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
98782888 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
* * * **
98782933 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
98782972 TCCACCTCTT
Statistics
Matches: 203, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 203 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
Found at i:98783106 original size:16 final size:16
Alignment explanation
Indices: 98783085--98783116 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
98783075 CATTCTGCAT
98783085 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
98783101 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
98783117 AAACACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12
Consensus pattern (16 bp):
TTAAACAACAGCAGCA
Found at i:98786951 original size:106 final size:104
Alignment explanation
Indices: 98786753--98786956 Score: 250
Period size: 104 Copynumber: 1.9 Consensus size: 104
98786743 GGATGATGGG
* * * * * **
98786753 AAAATGGTAGATGCAAATATATATAGAAGCTTGATTGGAAATTTTTTTTTCTAACAATTATGAAG
1 AAAATGGTAGATGCAAACATATATAAAAGCTTGACTGGAAATTTTTTTATCTAACAACTACCAAG
* *
98786818 TTGATTTGATGTTTGTAGCTAGTTTACTTTCAATATTGA
66 TTGATTTCATGTTTGGAGCTAGTTTACTTTCAATATTGA
* *
98786857 AAAATTGTAGATGCAAACATGTATAAAAGCTTGACT-GAAAGTTTGTTTTATCTAACAACTACCA
1 AAAATGGTAGATGCAAACATATATAAAAGCTTGACTGGAAA-TTT-TTTTATCTAACAACTACCA
*
98786921 GGCTTGATTTCATGTTTGCGA-CTAGTTTACTTTCAA
64 AG-TTGATTTCATGTTTG-GAGCTAGTTTACTTTCAA
98786957 GATTCATGAG
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
103 4 0.05
104 34 0.40
105 16 0.19
106 29 0.35
107 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (104 bp):
AAAATGGTAGATGCAAACATATATAAAAGCTTGACTGGAAATTTTTTTATCTAACAACTACCAAG
TTGATTTCATGTTTGGAGCTAGTTTACTTTCAATATTGA
Found at i:98792364 original size:12 final size:11
Alignment explanation
Indices: 98792355--98792379 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
98792345 TATGTTTTCT
98792355 ATTAATTTTTA
1 ATTAATTTTTA
98792366 ATTAATTTTTA
1 ATTAATTTTTA
98792377 ATT
1 ATT
98792380 TTTAAATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTAATTTTTA
Found at i:98794404 original size:21 final size:21
Alignment explanation
Indices: 98794379--98794447 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
98794369 TATAATGATT
98794379 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
98794400 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
98794420 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
98794440 ATTATTAT
1 ATTATTAT
98794448 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:98794460 original size:15 final size:14
Alignment explanation
Indices: 98794434--98794464 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
98794424 TATGGTTTTA
98794434 TATTAGATTATTAT
1 TATTAGATTATTAT
98794448 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
98794463 TA
1 TA
98794465 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:98794803 original size:14 final size:14
Alignment explanation
Indices: 98794779--98794811 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98794769 AAGAATTAAG
98794779 GAAACAAAGAAACA
1 GAAACAAAGAAACA
98794793 -AAACAAAAGAAACA
1 GAAAC-AAAGAAACA
98794807 GAAAC
1 GAAAC
98794812 GAAGCAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
GAAACAAAGAAACA
Found at i:98798923 original size:52 final size:51
Alignment explanation
Indices: 98798776--98798926 Score: 169
Period size: 52 Copynumber: 2.9 Consensus size: 51
98798766 TAACATATCA
* ** *
98798776 ATGCCATATCCCAAATATGGTCTTACACTGAATCACATTATCACATCACACCG
1 ATGCCATAGCCCAGCTATGGTCTTATACTGAA-CACA-TATCACATCACACCG
* ****
98798829 ATGCCATAGCCCAGCTATGGTCTTATACGGGAACACGA-ATCACATTGTGCCG
1 ATGCCATAGCCCAGCTATGGTCTTATAC-TGAACAC-ATATCACATCACACCG
98798881 ATGCCATAGCCCAGCTATGGTCTTATACTGAAGCACATATCACATC
1 ATGCCATAGCCCAGCTATGGTCTTATACTGAA-CACATATCACATC
98798927 TTTTTCGTCA
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
51 4 0.05
52 48 0.58
53 27 0.33
54 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (51 bp):
ATGCCATAGCCCAGCTATGGTCTTATACTGAACACATATCACATCACACCG
Found at i:98800602 original size:24 final size:25
Alignment explanation
Indices: 98800575--98800621 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
98800565 AACGTATTAT
98800575 TTTAACAT-TTTATATA-ATATTTTG
1 TTTAA-ATGTTTATATATATATTTTG
*
98800599 TTTAAATGTTTTTATATATATTT
1 TTTAAATGTTTATATATATATTT
98800622 GTACATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 12 0.60
25 6 0.30
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (25 bp):
TTTAAATGTTTATATATATATTTTG
Found at i:98803591 original size:23 final size:23
Alignment explanation
Indices: 98803565--98803610 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
98803555 AAATCCGAGG
98803565 TATTGACTAAATTGTAAAAATGT
1 TATTGACTAAATTGTAAAAATGT
98803588 TATTGACTAAATTGTAAAAATGT
1 TATTGACTAAATTGTAAAAATGT
98803611 GAAAAGTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.39
Consensus pattern (23 bp):
TATTGACTAAATTGTAAAAATGT
Found at i:98804373 original size:36 final size:37
Alignment explanation
Indices: 98804277--98804421 Score: 224
Period size: 37 Copynumber: 4.0 Consensus size: 37
98804267 TACGTATGAT
* *
98804277 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
98804312 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
98804349 CACTTATCACTTT-TTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
**
98804385 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
98804422 TAAAGCTATC
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
35 9 0.09
36 39 0.39
37 53 0.52
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:98804381 original size:73 final size:72
Alignment explanation
Indices: 98804277--98804421 Score: 227
Period size: 73 Copynumber: 2.0 Consensus size: 72
98804267 TACGTATGAT
**
98804277 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCTTGATCAGATAA
1 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTCACTTGATCAGATAA
98804342 GTGTAGC
66 GTGTAGC
* * * *
98804349 CACTTATCACTTTTTTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCACTTGATCAGATA
1 CACTTATCAC-TTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTCACTTGATCAGATA
98804414 AGTGTAGC
65 AGTGTAGC
98804422 TAAAGCTATC
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
72 10 0.15
73 56 0.85
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (72 bp):
CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTCACTTGATCAGATAA
GTGTAGC
Found at i:98804436 original size:46 final size:46
Alignment explanation
Indices: 98804385--98804607 Score: 257
Period size: 52 Copynumber: 4.6 Consensus size: 46
98804375 TAAGTGTAGC
*
98804385 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* * *
98804431 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* *
98804477 CACTTATCACTTTTCACTTATCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* *
98804529 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
98804581 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
98804608 AGTACTCAAA
Statistics
Matches: 158, Mismatches: 12, Indels: 14
0.86 0.07 0.08
Matches are distributed among these distances:
46 67 0.42
49 1 0.01
50 1 0.01
51 3 0.02
52 86 0.54
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
Found at i:98804486 original size:7 final size:7
Alignment explanation
Indices: 98804474--98804507 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
98804464 TAGCCGAAGC
98804474 TATCACT
1 TATCACT
98804481 TATCACT
1 TATCACT
*
98804488 TTTCACT
1 TATCACT
98804495 TATCACT
1 TATCACT
98804502 TGATCA
1 T-ATCA
98804508 GATAAGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.44
Consensus pattern (7 bp):
TATCACT
Found at i:98804573 original size:98 final size:98
Alignment explanation
Indices: 98804384--98804607 Score: 253
Period size: 98 Copynumber: 2.3 Consensus size: 98
98804374 ATAAGTGTAG
* * * *
98804384 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTC
1 CCACTTATCACTTTATCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
*
98804449 TTGATCAGATAAGTATAGCCGAAGCTATCA-CTTA
66 TTGATCAGATAAGTATAGCCGAAGCTA-AAGC-TA
* * *
98804483 TCACTTTTCAC-TTATCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT-CCAC
1 CCACTTATCACTTTATCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
* * *
98804546 TTG-TCACTTGATCAG-ATAAG-TGTAGCTAAAGCTA
66 TTGATCA---GATAAGTAT-AGCCGAAGCTAAAGCTA
98804580 CCACTTATCACTTTATCACTTGATCAGA
1 CCACTTATCACTTTATCACTTGATCAGA
98804608 AGTACTCAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
96 3 0.03
97 17 0.16
98 70 0.66
99 16 0.15
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.34
Consensus pattern (98 bp):
CCACTTATCACTTTATCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
TTGATCAGATAAGTATAGCCGAAGCTAAAGCTA
Found at i:98807661 original size:49 final size:49
Alignment explanation
Indices: 98807606--98807800 Score: 309
Period size: 49 Copynumber: 4.0 Consensus size: 49
98807596 TTCGTTTTCT
* * *
98807606 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* * *
98807655 CGATGCCATAGCCCAGCTATGGTCTTACACGAAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* *
98807704 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
98807753 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACA-AATCACAT
98807801 GTTCACATGT
Statistics
Matches: 137, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 131 0.96
50 6 0.04
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
Found at i:98809114 original size:37 final size:37
Alignment explanation
Indices: 98809053--98809198 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
98809043 TACGTATGAT
* *
98809053 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
98809088 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
98809125 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
**
98809162 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
98809199 TAAAGCTATC
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 91 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:98809213 original size:46 final size:46
Alignment explanation
Indices: 98809162--98809429 Score: 349
Period size: 52 Copynumber: 5.6 Consensus size: 46
98809152 TAAGTGTAGC
**
98809162 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
98809208 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
98809254 CACTTATCACTTTTCACTTATCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
98809306 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
98809358 CACTTATCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
98809403 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
98809430 AGTACTCAAA
Statistics
Matches: 202, Mismatches: 12, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
45 43 0.21
46 67 0.33
49 1 0.00
51 3 0.01
52 88 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:98809263 original size:7 final size:7
Alignment explanation
Indices: 98809251--98809284 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
98809241 TAGCCGAAGC
98809251 TATCACT
1 TATCACT
98809258 TATCACT
1 TATCACT
*
98809265 TTTCACT
1 TATCACT
98809272 TATCACT
1 TATCACT
98809279 TGATCA
1 T-ATCA
98809285 GATAAGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.44
Consensus pattern (7 bp):
TATCACT
Found at i:98809324 original size:45 final size:46
Alignment explanation
Indices: 98809258--98809429 Score: 215
Period size: 45 Copynumber: 3.7 Consensus size: 46
98809248 AGCTATCACT
*
98809258 TATCACTTTTCACTTAT-CACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTATACACTTGATCAGATAAGTGTAGCCGAAGC
* *
98809303 TATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGC
1 TATCACTTATCAC-TT--A--T-ACACTTGATCAGATAAGTGTAGCCGAAGC
* *
98809355 TATCACTTATCACTTGT-CACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACTTATACACTTGATCAGATAAGTGTAGCCGAAGC
98809400 TATCACTTATCACTT-TATCACTTGATCAGA
1 TATCACTTATCACTTATA-CACTTGATCAGA
98809430 AGTACTCAAA
Statistics
Matches: 113, Mismatches: 5, Indels: 17
0.84 0.04 0.13
Matches are distributed among these distances:
44 1 0.01
45 53 0.47
46 14 0.12
47 1 0.01
48 1 0.01
50 1 0.01
51 2 0.02
52 40 0.35
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (46 bp):
TATCACTTATCACTTATACACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:98827453 original size:30 final size:29
Alignment explanation
Indices: 98827399--98827455 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
98827389 TTAGATAGAT
**
98827399 ATATTTTTATAATTTCTTCTATATTTTAA
1 ATATTTTTATAATTTCTTAAATATTTTAA
*
98827428 ATATTTTATATAATTTTTTAAATATTTT
1 ATATTTT-TATAATTTCTTAAATATTTT
98827456 TATAAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (29 bp):
ATATTTTTATAATTTCTTAAATATTTTAA
Found at i:98827463 original size:21 final size:21
Alignment explanation
Indices: 98827422--98827460 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
98827412 TTCTTCTATA
98827422 TTTTAAATATTTTATATAATT
1 TTTTAAATATTTTATATAATT
98827443 TTTTAAATATTTT-TATAA
1 TTTTAAATATTTTATATAA
98827461 ATTATGGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTAAATATTTTATATAATT
Found at i:98829462 original size:3 final size:3
Alignment explanation
Indices: 98829454--98829494 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
98829444 ACTTGGTTGC
98829454 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
98829495 ACTGAAAAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:98833285 original size:28 final size:28
Alignment explanation
Indices: 98833245--98833302 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
98833235 GTTGGTGTAA
98833245 TATTTGCCAAGAATTAATACATGAGTTT
1 TATTTGCCAAGAATTAATACATGAGTTT
98833273 TATTTGCCAAGAATTAATACATGAGTTT
1 TATTTGCCAAGAATTAATACATGAGTTT
98833301 TA
1 TA
98833303 CCCTTTATGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (28 bp):
TATTTGCCAAGAATTAATACATGAGTTT
Found at i:98837485 original size:22 final size:22
Alignment explanation
Indices: 98837457--98837501 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
98837447 TTTTTAAAAT
98837457 ATTTTAATACTTATATTTTTAA
1 ATTTTAATACTTATATTTTTAA
* *
98837479 ATTTTAATATTTATGTTTTTAA
1 ATTTTAATACTTATATTTTTAA
98837501 A
1 A
98837502 CCTTGCGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTTTAATACTTATATTTTTAA
Found at i:98838564 original size:20 final size:22
Alignment explanation
Indices: 98838541--98838585 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
98838531 ATATATAATT
*
98838541 TATATTAATGAAA-TA-TAAAA
1 TATAGTAATGAAATTATTAAAA
*
98838561 TATAGTAATTAAATTATTAAAA
1 TATAGTAATGAAATTATTAAAA
98838583 TAT
1 TAT
98838586 TAACTGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.52
21 2 0.10
22 8 0.38
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (22 bp):
TATAGTAATGAAATTATTAAAA
Found at i:98838576 original size:29 final size:29
Alignment explanation
Indices: 98838522--98838585 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
98838512 AATTTATATT
* * * *
98838522 AAATTTAACATATATAATTTATATTAATG
1 AAATATAAAATATATAATTTAAATTAATA
*
98838551 AAATATAAAATATAGTAA-TTAAATTATTA
1 AAATATAAAATATA-TAATTTAAATTAATA
98838580 AAATAT
1 AAATAT
98838586 TAACTGTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
29 26 0.90
30 3 0.10
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.41
Consensus pattern (29 bp):
AAATATAAAATATATAATTTAAATTAATA
Found at i:98840616 original size:31 final size:32
Alignment explanation
Indices: 98840581--98840640 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 32
98840571 ATCAAATAAA
*
98840581 AATTTAGACATCAACT-TAAAAAAAATAGCAT
1 AATTTAAACATCAACTATAAAAAAAATAGCAT
* **
98840612 AATTTAAATATCATTTATAAAAAAAATAG
1 AATTTAAACATCAACTATAAAAAAAATAG
98840641 ATATTAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 12 0.50
32 12 0.50
ACGTcount: A:0.57, C:0.08, G:0.05, T:0.30
Consensus pattern (32 bp):
AATTTAAACATCAACTATAAAAAAAATAGCAT
Found at i:98841206 original size:15 final size:15
Alignment explanation
Indices: 98841178--98841219 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
98841168 TTCAGGAACT
98841178 ATAATTATAATTATAA
1 ATAA-TATAATTATAA
* *
98841194 TTAATATATTTATAA
1 ATAATATAATTATAA
98841209 ATAAT-TAATTA
1 ATAATATAATTA
98841220 GAATATACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 5 0.23
15 14 0.64
16 3 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAATATAATTATAA
Found at i:98860090 original size:17 final size:16
Alignment explanation
Indices: 98860057--98860099 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
98860047 TTAAATGGTA
*
98860057 ATATTATTAATATTAAT
1 ATATTA-TAAAATTAAT
98860074 ATAATTATAAAATTAAT
1 AT-ATTATAAAATTAAT
98860091 ATATTATAA
1 ATATTATAA
98860100 TTTTTAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 7 0.29
17 13 0.54
18 4 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATTATAAAATTAAT
Found at i:98865724 original size:17 final size:17
Alignment explanation
Indices: 98865688--98865721 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
98865678 AATACAATTT
98865688 ATTTTATAAAACAAATA
1 ATTTTATAAAACAAATA
*
98865705 ATTTTATATAA-AAATA
1 ATTTTATAAAACAAATA
98865721 A
1 A
98865722 ATTAATCTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
ATTTTATAAAACAAATA
Found at i:98866412 original size:43 final size:43
Alignment explanation
Indices: 98866361--98866469 Score: 191
Period size: 43 Copynumber: 2.5 Consensus size: 43
98866351 AAAACAATTA
98866361 AATTAAATTAAAGTCTTCTTTTTTTTTCTTAATTAAAAAATCC
1 AATTAAATTAAAGTCTTCTTTTTTTTTCTTAATTAAAAAATCC
* *
98866404 AATTAAATTAAAGTCTTCTCTTTTTTTCTTAATTAAAAAATTC
1 AATTAAATTAAAGTCTTCTTTTTTTTTCTTAATTAAAAAATCC
*
98866447 AATTAAATTAAAGTCTTCATTTT
1 AATTAAATTAAAGTCTTCTTTTT
98866470 GTTCCTAATT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.49
Consensus pattern (43 bp):
AATTAAATTAAAGTCTTCTTTTTTTTTCTTAATTAAAAAATCC
Found at i:98866585 original size:41 final size:45
Alignment explanation
Indices: 98866523--98866633 Score: 124
Period size: 41 Copynumber: 2.6 Consensus size: 45
98866513 TTTTTAAATA
* * *
98866523 TTTT-TTTCAACTTCTAAATATTAATTTTTTC-A-CAC-TACTTT
1 TTTTATTTCAACTTTTAAATATTAATATTTCCAACCACGTACTTT
**
98866564 TTTTATTTC-ACTTTTAAATATTAATATTTCCATACCACGTTTTTT
1 TTTTATTTCAACTTTTAAATATTAATATTTCCA-ACCACGTACTTT
*
98866609 TTTTATTTCAACTTTCAAATATTAA
1 TTTTATTTCAACTTTTAAATATTAA
98866634 ATAAAAATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
41 23 0.40
42 4 0.07
43 1 0.02
44 3 0.05
45 13 0.22
46 14 0.24
ACGTcount: A:0.29, C:0.15, G:0.01, T:0.55
Consensus pattern (45 bp):
TTTTATTTCAACTTTTAAATATTAATATTTCCAACCACGTACTTT
Found at i:98868194 original size:22 final size:22
Alignment explanation
Indices: 98868164--98868206 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
98868154 ACTTTGTTAA
98868164 AATTTTAAATTC-TTAAACAAT
1 AATTTTAAATTCATTAAACAAT
98868185 AATTGTTAAATTCATTAAACAA
1 AATT-TTAAATTCATTAAACAA
98868207 AGTTCTGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.20
22 8 0.40
23 8 0.40
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (22 bp):
AATTTTAAATTCATTAAACAAT
Found at i:98880086 original size:13 final size:13
Alignment explanation
Indices: 98880068--98880095 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
98880058 TTGTTACAAA
98880068 ATCCATGGGTTGG
1 ATCCATGGGTTGG
98880081 ATCCATGGGTTGG
1 ATCCATGGGTTGG
98880094 AT
1 AT
98880096 TGATTTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.14, G:0.36, T:0.32
Consensus pattern (13 bp):
ATCCATGGGTTGG
Found at i:98891334 original size:23 final size:23
Alignment explanation
Indices: 98891291--98891337 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
98891281 CCTGTTAATA
98891291 ACCATTCCTTTTTCCTACCATTC
1 ACCATTCCTTTTTCCTACCATTC
98891314 ACCATTCCTTTTTCCTACCATTC
1 ACCATTCCTTTTTCCTACCATTC
98891337 A
1 A
98891338 TCAATGTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.38, G:0.00, T:0.43
Consensus pattern (23 bp):
ACCATTCCTTTTTCCTACCATTC
Found at i:98900070 original size:31 final size:31
Alignment explanation
Indices: 98900035--98900093 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
98900025 TTTGAGTCCA
* * *
98900035 TTTTGAGTTTAATTTATTTAAATGTAAATAC
1 TTTTGAATTTAATTGATTTAAATATAAATAC
*
98900066 TTTTGAATTTGATTGATTTAAATATAAA
1 TTTTGAATTTAATTGATTTAAATATAAA
98900094 CCGTTAGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (31 bp):
TTTTGAATTTAATTGATTTAAATATAAATAC
Found at i:98900593 original size:18 final size:17
Alignment explanation
Indices: 98900561--98900608 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 17
98900551 AAAAATATTA
*
98900561 TAATTTTTCTTGATTTT
1 TAATTTTTTTTGATTTT
98900578 TAATTTTTTTTAGATTTT
1 TAATTTTTTTT-GATTTT
98900596 TCAAGTTTTTTTT
1 T-AA-TTTTTTTT
98900609 TGCTATTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 10 0.37
18 7 0.26
19 2 0.07
20 8 0.30
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.71
Consensus pattern (17 bp):
TAATTTTTTTTGATTTT
Found at i:98904308 original size:20 final size:20
Alignment explanation
Indices: 98904285--98904324 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
98904275 TATAATATCA
98904285 TGTTAGCTTATATTATTTTT
1 TGTTAGCTTATATTATTTTT
98904305 TGTTAGCTTATATTATTTTT
1 TGTTAGCTTATATTATTTTT
98904325 ACATATTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.05, G:0.10, T:0.65
Consensus pattern (20 bp):
TGTTAGCTTATATTATTTTT
Found at i:98908025 original size:14 final size:14
Alignment explanation
Indices: 98908003--98908032 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98907993 TATCTTATAA
*
98908003 ATATGCGTTAATCT
1 ATATACGTTAATCT
98908017 ATATACGTTAATCT
1 ATATACGTTAATCT
98908031 AT
1 AT
98908033 CTTGAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (14 bp):
ATATACGTTAATCT
Found at i:98909216 original size:91 final size:89
Alignment explanation
Indices: 98909105--98909307 Score: 237
Period size: 91 Copynumber: 2.2 Consensus size: 89
98909095 TATAATAAAT
* * ** * *
98909105 ATTATTTTATTTTATTTCATTTTCAGTGTATTTGGGCTAGAGTCTAGTGTTG-AATAAATTTTTT
1 ATTA-TTTATTTTATTTCATTTTCAGGGCA-TCAGGCTAGAGTCTAGTGATGCAATAAATATTTT
*
98909169 TTTTATTTTCCGAAAGAATCATAATT
64 TTTTATTTTCCGAAAGAATCATAATA
* * *
98909195 ATTATAATTATTTTATTTCATTTTCAGGGCATCAGGCTTGAGTTTGGTGATGCAATAAATATTTT
1 ATTAT--TTATTTTATTTCATTTTCAGGGCATCAGGCTAGAGTCTAGTGATGCAATAAATATTTT
** * *
98909260 TTTTATTTTTTGAAATAATTATAATA
64 TTTTATTTTCCGAAAGAATCATAATA
98909286 ATTATTTATTTTATTTCATTTT
1 ATTATTTATTTTATTTCATTTT
98909308 TTTGAATATT
Statistics
Matches: 96, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
89 18 0.19
90 19 0.20
91 59 0.61
ACGTcount: A:0.28, C:0.07, G:0.12, T:0.53
Consensus pattern (89 bp):
ATTATTTATTTTATTTCATTTTCAGGGCATCAGGCTAGAGTCTAGTGATGCAATAAATATTTTTT
TTATTTTCCGAAAGAATCATAATA
Found at i:98909324 original size:91 final size:88
Alignment explanation
Indices: 98909081--98909324 Score: 215
Period size: 91 Copynumber: 2.7 Consensus size: 88
98909071 TAAAATAATT
*
98909081 TTTTTTGAAATAATTATAATAAATATTATTTTATTTTATTTCA-TTTTCAGTGTATTTGGGCTAG
1 TTTTTTGAAATAATTATAAT--A-ATTA-TTTATTTTATTTCATTTTTC--TGTATTTGGGCTTG
* *
98909145 AGTCTAGTGTTGAATAAATTTTTTTTTTA
60 AGTCTAGTGATGAATAAATATTTTTTTTA
** * * * * * **
98909174 TTTTCCGAAAGAATCATAATTATTATAATTATTTTATTTCA-TTTTCAGGGCA-TCAGGCTTGAG
1 TTTTTTGAAATAATTATAATAATTAT--TTATTTTATTTCATTTTTC--TGTATTTGGGCTTGAG
* *
98909237 TTTGGTGATGCAATAAATATTTTTTTTA
62 TCTAGTGATG-AATAAATATTTTTTTTA
*
98909265 TTTTTTGAAATAATTATAATAATTATTTATTTTATTTCATTTTTTTGAATATTTGGGCTT
1 TTTTTTGAAATAATTATAATAATTATTTATTTTATTTCATTTTTCTG--TATTTGGGCTT
98909325 CTACAATAGT
Statistics
Matches: 120, Mismatches: 24, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
88 1 0.01
89 14 0.12
90 24 0.20
91 65 0.54
93 16 0.13
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53
Consensus pattern (88 bp):
TTTTTTGAAATAATTATAATAATTATTTATTTTATTTCATTTTTCTGTATTTGGGCTTGAGTCTA
GTGATGAATAAATATTTTTTTTA
Found at i:98926880 original size:21 final size:21
Alignment explanation
Indices: 98926855--98927004 Score: 108
Period size: 21 Copynumber: 7.1 Consensus size: 21
98926845 TTTACTTTTC
*
98926855 GTTTATCTCTTATGAGCTTCT
1 GTTTAACTCTTATGAGCTTCT
* * *
98926876 ATTTAACT-TATATGAGTTTCC
1 GTTTAACTCT-TATGAGCTTCT
* * *
98926897 GTTCAACTCTTTTGAGTTTCT
1 GTTTAACTCTTATGAGCTTCT
* **
98926918 GTTCAACTCTTATGATTTTCT
1 GTTTAACTCTTATGAGCTTCT
* *
98926939 AG-TCAGCTCTTATGAGCTTCT
1 -GTTTAACTCTTATGAGCTTCT
* *
98926960 GTTTAACTCATATGAG-TTTT
1 GTTTAACTCTTATGAGCTTCT
* *
98926980 CGTTTAGCTCTTACGAGCTTCT
1 -GTTTAACTCTTATGAGCTTCT
98927002 GTT
1 GTT
98927005 CAGCTTTCGA
Statistics
Matches: 102, Mismatches: 21, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
20 5 0.05
21 92 0.90
22 5 0.05
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (21 bp):
GTTTAACTCTTATGAGCTTCT
Found at i:98926932 original size:42 final size:42
Alignment explanation
Indices: 98926861--98927006 Score: 159
Period size: 42 Copynumber: 3.5 Consensus size: 42
98926851 TTTCGTTTAT
* * * *
98926861 CTCTTATGAGCTTCTATTTAACTTATATGAGTTTCCGTTCAA
1 CTCTTATGAGCTTCTGTTCAACTCATATGAGTTTCCGTTCAG
* * * * *
98926903 CTCTTTTGAGTTTCTGTTCAACTCTTATGATTTTCTAG-TCAG
1 CTCTTATGAGCTTCTGTTCAACTCATATGAGTTTC-CGTTCAG
* * *
98926945 CTCTTATGAGCTTCTGTTTAACTCATATGAGTTTTCGTTTAG
1 CTCTTATGAGCTTCTGTTCAACTCATATGAGTTTCCGTTCAG
*
98926987 CTCTTACGAGCTTCTGTTCA
1 CTCTTATGAGCTTCTGTTCA
98927007 GCTTTCGAAC
Statistics
Matches: 83, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
41 1 0.01
42 81 0.98
43 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (42 bp):
CTCTTATGAGCTTCTGTTCAACTCATATGAGTTTCCGTTCAG
Found at i:98929670 original size:19 final size:21
Alignment explanation
Indices: 98929643--98929682 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
98929633 ATACAACGAA
98929643 TTAAAATTTAT-T-TATAAAT
1 TTAAAATTTATCTCTATAAAT
*
98929662 TTAATATTTATCTCTATAAAT
1 TTAAAATTTATCTCTATAAAT
98929683 AATAATTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 1 0.06
21 7 0.39
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (21 bp):
TTAAAATTTATCTCTATAAAT
Found at i:98941067 original size:15 final size:15
Alignment explanation
Indices: 98941047--98941093 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
98941037 TTATTTCAAG
98941047 TTATATTTTAGTTAT
1 TTATATTTTAGTTAT
* **
98941062 TTATATTTAAAATA-
1 TTATATTTTAGTTAT
98941076 TTATATTTTAGTTAT
1 TTATATTTTAGTTAT
98941091 TTA
1 TTA
98941094 CGTTATCATT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (15 bp):
TTATATTTTAGTTAT
Found at i:98941091 original size:14 final size:14
Alignment explanation
Indices: 98941047--98941091 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
98941037 TTATTTCAAG
98941047 TTATATTTTAGTTA
1 TTATATTTTAGTTA
* **
98941061 TTTATATTTAAAATA
1 -TTATATTTTAGTTA
98941076 TTATATTTTAGTTA
1 TTATATTTTAGTTA
98941090 TT
1 TT
98941092 TACGTTATCA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (14 bp):
TTATATTTTAGTTA
Found at i:98948678 original size:16 final size:17
Alignment explanation
Indices: 98948652--98948683 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
98948642 GTCAAATCGA
98948652 TTAATTAATATTTTTAT
1 TTAATTAATATTTTTAT
98948669 TTAA-TAATATTTTTA
1 TTAATTAATATTTTTA
98948684 AAAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTAATTAATATTTTTAT
Found at i:98963084 original size:28 final size:29
Alignment explanation
Indices: 98963053--98963109 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
98963043 AAAATATACT
98963053 TTTAACCCTTT-AAAACTATAAAAATTTA
1 TTTAACCCTTTAAAAACTATAAAAATTTA
* * *
98963081 TTTAATCTTTTAAAAATTATAAAAATTTA
1 TTTAACCCTTTAAAAACTATAAAAATTTA
98963110 GAATATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 9 0.36
29 16 0.64
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (29 bp):
TTTAACCCTTTAAAAACTATAAAAATTTA
Found at i:98974156 original size:131 final size:130
Alignment explanation
Indices: 98973757--98974166 Score: 380
Period size: 132 Copynumber: 3.1 Consensus size: 130
98973747 CTCCAAAGAG
* ** ** *
98973757 ATATTCGATTATTTTGAACAAACGGGAAATTGTATTCCAACACGATAGGGTACT-ATTCCCCGAA
1 ATATTCGATTATTTTGAACAAAAGGGAAATCATAACCCAACACGATAGGGCA-TGATT-CCCGAA
** * * * * * *
98973821 TTGCCAAACATCGAATATCGCCTTCGTTTTAAAGGGTTTTTAGAAAATGTGAGTGAAATTTCAAA
64 TTATCAAACACCGAGTATTGCTTTCGTTTTAAA-GGTTTTTAGAAAACGTGAGTGAAATTTTAAA
98973886 GGA
128 GGA
* * * * * * *
98973889 ATCTTCGATTGTTTTGAAAAAAACGGGAAATCACAACCCAACATG-TCAGAGCACGATTCCCGAA
1 ATATTCGATTATTTTGAACAAAA-GGGAAATCATAACCCAACACGAT-AGGGCATGATTCCCGAA
* * ***
98973953 TTATCAAACACCGAGTATTG-TCTTCGTTTTGGAAGGTTTTTA-ATAAACGCGAGTGAAAACCTA
64 TTATCAAACACCGAGTATTGCT-TTCGTTTT-AAAGGTTTTTAGA-AAACGTGAGTGAAATTTTA
98974016 AAGGA
126 AAGGA
* *
98974021 ATATTCGATTATTTTGAACAAAAGAGAAATCATAACCCAACACGATAGGGCATGATTCTCGAATT
1 ATATTCGATTATTTTGAACAAAAGGGAAATCATAACCCAACACGATAGGGCATGATTCCCGAATT
* * * *
98974086 ATCAAACACCGGGTATTGCTTTTGTTTTAAAGGATTTTTAGAAGAA-ATGAGTGAAATTTTGAAG
66 ATCAAACACCGAGTATTGCTTTCGTTTTAAAGG-TTTTTAGAA-AACGTGAGTGAAATTTTAAAG
*
98974150 GG
129 GA
**
98974152 ATATTTAATTATTTT
1 ATATTCGATTATTTT
98974167 AAGCAAATTA
Statistics
Matches: 220, Mismatches: 47, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
130 4 0.02
131 92 0.42
132 100 0.45
133 24 0.11
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (130 bp):
ATATTCGATTATTTTGAACAAAAGGGAAATCATAACCCAACACGATAGGGCATGATTCCCGAATT
ATCAAACACCGAGTATTGCTTTCGTTTTAAAGGTTTTTAGAAAACGTGAGTGAAATTTTAAAGGA
Found at i:98977113 original size:25 final size:25
Alignment explanation
Indices: 98977067--98977120 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
98977057 AATAAATTTG
* *
98977067 AAATAAAATATTTGTGTTTTTTATA
1 AAATAAAACATTTATGTTTTTTATA
*
98977092 AAATAAAACATTTAT-TTATTTTTTA
1 AAATAAAACATTTATGTT-TTTTATA
98977117 AAAT
1 AAAT
98977121 CTAACTGGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (25 bp):
AAATAAAACATTTATGTTTTTTATA
Found at i:98982396 original size:1 final size:1
Alignment explanation
Indices: 98982392--98982416 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
98982382 AAATTCATTG
98982392 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
98982417 GTCGTTGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:98990028 original size:20 final size:20
Alignment explanation
Indices: 98990003--98990052 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
98989993 TGGCTTAAAA
98990003 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
98990023 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
98990040 GTGGTAGTGGATT
1 TTGGTAGTGGATT
98990053 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:98994656 original size:20 final size:20
Alignment explanation
Indices: 98994631--98994680 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
98994621 TGGCTTAAAA
98994631 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
98994651 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
98994668 GTGGTAGTGGATT
1 TTGGTAGTGGATT
98994681 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:98998390 original size:21 final size:23
Alignment explanation
Indices: 98998348--98998390 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
98998338 ATCAATGACG
98998348 ACAATAAAGAATGAAATATATAT
1 ACAATAAAGAATGAAATATATAT
*
98998371 ACAA-AAAGAA-GAAATTTATA
1 ACAATAAAGAATGAAATATATA
98998391 ATAAAACTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 6 0.32
23 4 0.21
ACGTcount: A:0.63, C:0.05, G:0.09, T:0.23
Consensus pattern (23 bp):
ACAATAAAGAATGAAATATATAT
Found at i:99007417 original size:24 final size:25
Alignment explanation
Indices: 99007377--99007431 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
99007367 ATAGTAAAAA
*
99007377 TATAATTTTATTA-TTTTAATAGAT
1 TATAATTTTATTATTTTTAAAAGAT
*
99007401 TATAGTTTTA-TAGTTTTTAAAAGAT
1 TATAATTTTATTA-TTTTTAAAAGAT
99007426 TA-AATT
1 TATAATT
99007432 AATTTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 2 0.08
24 12 0.46
25 12 0.46
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (25 bp):
TATAATTTTATTATTTTTAAAAGAT
Found at i:99013326 original size:340 final size:342
Alignment explanation
Indices: 99012544--99013476 Score: 1190
Period size: 340 Copynumber: 2.7 Consensus size: 342
99012534 ATACGAATCA
* ** * *
99012544 TGCT-AAAATTAGCTTTT-CCTAGTTCCTCTACCTCAGTTAGAGCAGACTGAACTTCTTCTTTAC
1 TGCTCAAAATTAGCTTTTCCCGA-TAACTCTACCTCAGTTAGAGCAGACTGAACTTCTTCTTCAA
* *
99012607 CGAGGCCAGGACTTGTCATGTTCCCACCATCGATACAGCCTGCAGAACCATTCATTGGCCCAGTA
65 CGAGGCCAGGACTTGTCATGTTCCCACCATCGACACAGCCTGCAGAACCTTTCATTGGCCCAGTA
* * * * * *
99012672 GAAAG---TTGCAAACGTATTCTTCTAGGAGCAATGGCTTGGTTTACAATATTCATCTCTGACTC
130 GAAAGTTTTTGCAAGCGTATTCTTCTTGGAGCAGTGACTTGATTTACAATATTCTTCTCTGACTC
99012734 ATCAGAGCTAGAAGTCTGTCCTA-CAGCTTCAGCTTCTGTGACCTGCATTTAAAGTATTGGAAGA
195 ATCAGAGCTAGAAGTCTGTCC-AGCAGCTTCAGCTTCTGTGACCTGCATTTAAAGTATTGGAAGA
* *
99012798 AATTGTTCACTTCAAGAAATGTAATTCAGTGACTAGCATTATATTTTGACCTTTGGCAAAAGAAA
259 AATTGTTCACTTCAAGAAATGTAATTCAGTGACTAACATTATAATTTGACCTTTGGC--AAGAAA
99012863 AGGAGTAAGATAAACAGTGCATCAACAG
322 A-GAG-AAG----ACAGT-CATCAACAG
** * * *
99012891 CACTCAAAATTAGCTTTTTTCCTGGTAACTCTACCTCGGTTAGAGCAGACTGAACTTCTTCTTCA
1 TGCTCAAAATTAGC--TTTTCCCGATAACTCTACCTCAGTTAGAGCAGACTGAACTTCTTCTTCA
* *
99012956 ACGAGGCCAGGACTTGTCATGCTCCCACCATCGACACAGCCTGCAGAACCTTTCATTGGTCCAGT
64 ACGAGGCCAGGACTTGTCATGTTCCCACCATCGACACAGCCTGCAGAACCTTTCATTGGCCCAGT
* * *
99013021 AGAAAGATTAATTTGCAGGCGTATTCTTCTTGGAGCAGTGCCTTGATTTACAATATTCTTCTCTA
129 AGAAAG-TT--TTTGCAAGCGTATTCTTCTTGGAGCAGTGACTTGATTTACAATATTCTTCTCTG
* *
99013086 ACTCATCTGAGCTAGAAGTCAGTCCAGCAGCTTCAGCTTCTGTGACCTGCATTTAAAGTATTGGA
191 ACTCATCAGAGCTAGAAGTCTGTCCAGCAGCTTCAGCTTCTGTGACCTGCATTTAAAGTATTGGA
* ** * * *
99013151 AGATATTGTTCACTTTGAGAAATGTATTTCAGTGTACTAATATTATAATTTGGCC-TTGGC-AGT
256 AGAAATTGTTCACTTCAAGAAATGTAATTCAGTG-ACTAACATTATAATTTGACCTTTGGCAAG-
*
99013214 AAAA-A-CAG-CA-T-ATCAACAG
319 AAAAGAGAAGACAGTCATCAACAG
* *
99013233 TGCTCAAAATTAGCTTTTCCCGATAACTCTACCTCAGTAAGAGCAGATTGAACTTCTTCTTCAAC
1 TGCTCAAAATTAGCTTTTCCCGATAACTCTACCTCAGTTAGAGCAGACTGAACTTCTTCTTCAAC
* * * *
99013298 GAGGCCAGGACTAGTCATGTTCCCACCATTGACACAGCCTGCAAAACCTTTCATTGCCCCAGTAG
66 GAGGCCAGGACTTGTCATGTTCCCACCATCGACACAGCCTGCAGAACCTTTCATTGGCCCAGTAG
* *
99013363 AAAGTTTCGTTTGCAAGTGTATTCTTCTTGGTGCAGTGACTTGATTTACAATATTCTTCTCTGAC
131 AAAG-TT--TTTGCAAGCGTATTCTTCTTGGAGCAGTGACTTGATTTACAATATTCTTCTCTGAC
* *
99013428 TCATCAGAGCTAGAAGTCTGTTCTGCAGCTTCAGCTTCTGTGACCTGCA
193 TCATCAGAGCTAGAAGTCTGTCCAGCAGCTTCAGCTTCTGTGACCTGCA
99013477 AACGAAAAAG
Statistics
Matches: 515, Mismatches: 58, Indels: 33
0.85 0.10 0.05
Matches are distributed among these distances:
340 207 0.40
342 20 0.04
344 1 0.00
345 2 0.00
347 2 0.00
348 9 0.02
350 108 0.21
351 1 0.00
352 1 0.00
353 2 0.00
354 4 0.01
355 1 0.00
356 141 0.27
357 16 0.03
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (342 bp):
TGCTCAAAATTAGCTTTTCCCGATAACTCTACCTCAGTTAGAGCAGACTGAACTTCTTCTTCAAC
GAGGCCAGGACTTGTCATGTTCCCACCATCGACACAGCCTGCAGAACCTTTCATTGGCCCAGTAG
AAAGTTTTTGCAAGCGTATTCTTCTTGGAGCAGTGACTTGATTTACAATATTCTTCTCTGACTCA
TCAGAGCTAGAAGTCTGTCCAGCAGCTTCAGCTTCTGTGACCTGCATTTAAAGTATTGGAAGAAA
TTGTTCACTTCAAGAAATGTAATTCAGTGACTAACATTATAATTTGACCTTTGGCAAGAAAAGAG
AAGACAGTCATCAACAG
Found at i:99026242 original size:21 final size:20
Alignment explanation
Indices: 99026216--99026254 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
99026206 AAAAAAGATG
99026216 CGTAGAATTGAAGCTTGGATA
1 CGTAGAATTGAAG-TTGGATA
99026237 CGTAGAATTGAAGTTGGA
1 CGTAGAATTGAAGTTGGA
99026255 ATCTATGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (20 bp):
CGTAGAATTGAAGTTGGATA
Found at i:99036533 original size:16 final size:18
Alignment explanation
Indices: 99036502--99036535 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
99036492 AAAACTAAGA
99036502 ATTTTGTTTAATGTTTTT
1 ATTTTGTTTAATGTTTTT
99036520 ATTTT-TTT-ATGTTTTT
1 ATTTTGTTTAATGTTTTT
99036536 TTAAAGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 3 0.19
18 5 0.31
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (18 bp):
ATTTTGTTTAATGTTTTT
Found at i:99036656 original size:29 final size:31
Alignment explanation
Indices: 99036611--99036674 Score: 89
Period size: 29 Copynumber: 2.1 Consensus size: 31
99036601 AAATTTCCCT
*
99036611 ATTTTTTTCTCACTTTATTTA-TTTTTA-AA
1 ATTTTTATCTCACTTTATTTATTTTTTATAA
99036640 ATTTTTATCT-ACTTTTATTTATTTTTTATAA
1 ATTTTTATCTCAC-TTTATTTATTTTTTATAA
99036671 ATTT
1 ATTT
99036675 CTAAATTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 2 0.06
29 17 0.55
30 6 0.19
31 6 0.19
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (31 bp):
ATTTTTATCTCACTTTATTTATTTTTTATAA
Found at i:99038924 original size:24 final size:24
Alignment explanation
Indices: 99038897--99038953 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
99038887 CCCAGTACTT
*
99038897 CTGCCTTCGCTG-CTGCAAGCACTC
1 CTGCCTTCGCTGTC-ACAAGCACTC
*
99038921 CTGCCTTCGGTGTCACAAGCACTC
1 CTGCCTTCGCTGTCACAAGCACTC
99038945 CTGCCTTCG
1 CTGCCTTCG
99038954 GTTCAACTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 29 0.97
25 1 0.03
ACGTcount: A:0.12, C:0.40, G:0.21, T:0.26
Consensus pattern (24 bp):
CTGCCTTCGCTGTCACAAGCACTC
Found at i:99039118 original size:21 final size:22
Alignment explanation
Indices: 99039058--99039119 Score: 56
Period size: 21 Copynumber: 2.8 Consensus size: 22
99039048 AAGCGCACCA
*
99039058 GCTTTTGGCACTTCTCTCACTCAT
1 GCTTTTGGCACTTC-C-AACTCAT
* *
99039082 GCTTTTGG-AGCATCCAATTC-T
1 GCTTTTGGCA-CTTCCAACTCAT
99039103 GCTTTTGGCACTTCCAA
1 GCTTTTGGCACTTCCAA
99039120 GACTCCTGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
21 15 0.47
22 4 0.12
23 2 0.06
24 11 0.34
ACGTcount: A:0.16, C:0.29, G:0.16, T:0.39
Consensus pattern (22 bp):
GCTTTTGGCACTTCCAACTCAT
Found at i:99039133 original size:45 final size:45
Alignment explanation
Indices: 99039058--99039156 Score: 112
Period size: 45 Copynumber: 2.2 Consensus size: 45
99039048 AAGCGCACCA
*
99039058 GCTTTTGGCACTTCTCTCACTCATGCTTTTGGAGCATCCAA-TTCT
1 GCTTTTGGCACTTCTCACACTCATGCTTTTGGAGCAT-CAAGTTCT
* * * **
99039103 GCTTTTGGCACTTC-CAAGACTCCTGTTTTTGGAGTGTCAAGTTCT
1 GCTTTTGGCACTTCTC-ACACTCATGCTTTTGGAGCATCAAGTTCT
99039148 GCTTTTGGC
1 GCTTTTGGC
99039157 GTTTCCGACA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 4 0.09
45 42 0.91
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.40
Consensus pattern (45 bp):
GCTTTTGGCACTTCTCACACTCATGCTTTTGGAGCATCAAGTTCT
Found at i:99044919 original size:83 final size:83
Alignment explanation
Indices: 99044784--99044949 Score: 296
Period size: 83 Copynumber: 2.0 Consensus size: 83
99044774 ATGTATCAAA
**
99044784 TTTAATCTTGATTTTAAAAAAATTAAGCTTCAACATTATATATCGTATCCTTCCAACCAAATATA
1 TTTAATCTTGATTTTAAAAAAACAAAGCTTCAACATTATATATCGTATCCTTCCAACCAAATATA
99044849 AAAAAAAAAAACAAAAAT
66 AAAAAAAAAAACAAAAAT
*
99044867 TTTAATCTTGATTTTAAAAAAACAAAGCTTCAACATTATATATCGTATCCTTCCAACCAAATATC
1 TTTAATCTTGATTTTAAAAAAACAAAGCTTCAACATTATATATCGTATCCTTCCAACCAAATATA
*
99044932 AAAAAAAGAAACAAAAAT
66 AAAAAAAAAAACAAAAAT
99044950 GAACTCCCAA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 79 1.00
ACGTcount: A:0.50, C:0.16, G:0.04, T:0.30
Consensus pattern (83 bp):
TTTAATCTTGATTTTAAAAAAACAAAGCTTCAACATTATATATCGTATCCTTCCAACCAAATATA
AAAAAAAAAAACAAAAAT
Found at i:99045046 original size:40 final size:40
Alignment explanation
Indices: 99045002--99045117 Score: 94
Period size: 40 Copynumber: 3.1 Consensus size: 40
99044992 ATTCTTTTAA
99045002 AATTAATTCTCAATGTTATAAATAATTTATAAAGAAAAAT
1 AATTAATTCTCAATGTTATAAATAATTTATAAAGAAAAAT
* * **
99045042 AATTAAATTATACAAT-TT-T-TATTCTTT-T-------AA-
1 AATT-AATTCT-CAATGTTATAAATAATTTATAAAGAAAAAT
99045072 AATTAATTCTCAATGTTATAAATAATTTATAAAGAAAAAT
1 AATTAATTCTCAATGTTATAAATAATTTATAAAGAAAAAT
99045112 AATTAA
1 AATTAA
99045118 ATTATACAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 28
0.60 0.09 0.31
Matches are distributed among these distances:
28 4 0.07
29 7 0.13
30 5 0.09
31 7 0.13
32 1 0.02
38 1 0.02
39 7 0.13
40 11 0.20
41 7 0.13
42 4 0.07
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.41
Consensus pattern (40 bp):
AATTAATTCTCAATGTTATAAATAATTTATAAAGAAAAAT
Found at i:99045080 original size:70 final size:70
Alignment explanation
Indices: 99044985--99045127 Score: 286
Period size: 70 Copynumber: 2.0 Consensus size: 70
99044975 CTCTTTTTAT
99044985 AATTTTTATTCTTTTAAAATTAATTCTCAATGTTATAAATAATTTATAAAGAAAAATAATTAAAT
1 AATTTTTATTCTTTTAAAATTAATTCTCAATGTTATAAATAATTTATAAAGAAAAATAATTAAAT
99045050 TATAC
66 TATAC
99045055 AATTTTTATTCTTTTAAAATTAATTCTCAATGTTATAAATAATTTATAAAGAAAAATAATTAAAT
1 AATTTTTATTCTTTTAAAATTAATTCTCAATGTTATAAATAATTTATAAAGAAAAATAATTAAAT
99045120 TATAC
66 TATAC
99045125 AAT
1 AAT
99045128 GTGTAAAAGT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.44
Consensus pattern (70 bp):
AATTTTTATTCTTTTAAAATTAATTCTCAATGTTATAAATAATTTATAAAGAAAAATAATTAAAT
TATAC
Found at i:99045140 original size:22 final size:22
Alignment explanation
Indices: 99045115--99045159 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
99045105 GAAAAATAAT
*
99045115 TAAATTATACAATGTGTAAAAG
1 TAAATTATACAATGTATAAAAG
*
99045137 TAAATTATATAATGTATAAAAG
1 TAAATTATACAATGTATAAAAG
99045159 T
1 T
99045160 TGAGGGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (22 bp):
TAAATTATACAATGTATAAAAG
Found at i:99049420 original size:26 final size:26
Alignment explanation
Indices: 99049384--99049436 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
99049374 GAATGGCTTG
99049384 AGGACTTATTAGCAAATCGACCATTT
1 AGGACTTATTAGCAAATCGACCATTT
99049410 AGGACTTATTAGCAAATCGACCATTT
1 AGGACTTATTAGCAAATCGACCATTT
99049436 A
1 A
99049437 ATAAAAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (26 bp):
AGGACTTATTAGCAAATCGACCATTT
Found at i:99052911 original size:50 final size:50
Alignment explanation
Indices: 99052836--99053062 Score: 364
Period size: 50 Copynumber: 4.5 Consensus size: 50
99052826 CCATGGCAAC
* *
99052836 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
99052886 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
99052936 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
99052986 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
99053036 CAAGTAAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
99053063 CTGATCAATG
Statistics
Matches: 163, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 141 0.87
51 22 0.13
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:99053080 original size:31 final size:31
Alignment explanation
Indices: 99053042--99053100 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
99053032 ATGACAAGTA
99053042 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
99053073 AAAAGTGGTAGCTTCGGCTACCTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
99053101 TCGGCTACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAATG
Found at i:99053108 original size:46 final size:46
Alignment explanation
Indices: 99053055--99053146 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
99053045 AGTGGTAGCT
* *
99053055 TCGGCTACCTGATCAATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* * *
99053101 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
99053147 ATGAATAGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:99069280 original size:30 final size:30
Alignment explanation
Indices: 99069246--99069302 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
99069236 GAGAAATCAG
99069246 GTTAAAAACTTGAAAAAATATAATAGTAAA
1 GTTAAAAACTTGAAAAAATATAATAGTAAA
99069276 GTTAAAAACTTGAAAAAATATAATAGT
1 GTTAAAAACTTGAAAAAATATAATAGT
99069303 TTATGTTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.04, G:0.11, T:0.28
Consensus pattern (30 bp):
GTTAAAAACTTGAAAAAATATAATAGTAAA
Found at i:99074976 original size:3 final size:3
Alignment explanation
Indices: 99074970--99075013 Score: 63
Period size: 3 Copynumber: 14.3 Consensus size: 3
99074960 AGAGAGAGGG
99074970 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGAA AGAA AGA A-A AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AG-A AGA AGA AGA A
99075014 AGATGGTGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
3 30 0.77
4 7 0.18
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:99076426 original size:20 final size:18
Alignment explanation
Indices: 99076396--99076440 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
99076386 AGAATTTTAA
99076396 TAAAAATATATAATAATGG
1 TAAAAATATAT-ATAATGG
99076415 TAAAAGATATATATAAT--
1 TAAAA-ATATATATAATGG
99076432 TAAAAATAT
1 TAAAAATAT
99076441 TAAATAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.16
17 5 0.20
19 10 0.40
20 6 0.24
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (18 bp):
TAAAAATATATATAATGG
Found at i:99076911 original size:29 final size:30
Alignment explanation
Indices: 99076856--99076916 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
99076846 TTAATTAAAT
* * *
99076856 TTTTTATTTTATAATAATCTATAATATATA
1 TTTTAATTTTATAAAAATATATAATATATA
99076886 TTTTAATTTTATAAAAATAT-T--TATATA
1 TTTTAATTTTATAAAAATATATAATATATA
99076913 TTTT
1 TTTT
99076917 GTTATATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 10 0.36
29 1 0.04
30 17 0.61
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (30 bp):
TTTTAATTTTATAAAAATATATAATATATA
Found at i:99085148 original size:21 final size:20
Alignment explanation
Indices: 99085112--99085150 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
99085102 GGAGAAAACA
99085112 AGAGAAAGCCAAGCGGCAGT
1 AGAGAAAGCCAAGCGGCAGT
99085132 AGAGATAAG-CAACGCGGCA
1 AGAGA-AAGCCAA-GCGGCA
99085151 ACCGCAACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.41, C:0.21, G:0.33, T:0.05
Consensus pattern (20 bp):
AGAGAAAGCCAAGCGGCAGT
Found at i:99088899 original size:25 final size:25
Alignment explanation
Indices: 99088853--99088904 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
99088843 GGCGTATATC
* * *
99088853 TTGATTTTATTTGATTCCAATCAAT
1 TTGATTTGATTTGAATCAAATCAAT
* *
99088878 TTGATTTGATTTTAATCAAATCGAT
1 TTGATTTGATTTGAATCAAATCAAT
99088903 TT
1 TT
99088905 AATTGCTCCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.52
Consensus pattern (25 bp):
TTGATTTGATTTGAATCAAATCAAT
Found at i:99088903 original size:20 final size:20
Alignment explanation
Indices: 99088861--99088904 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
99088851 TCTTGATTTT
* *
99088861 ATTTGATTCCAATCAATTTG
1 ATTTGATTCCAATCAAATCG
**
99088881 ATTTGATTTTAATCAAATCG
1 ATTTGATTCCAATCAAATCG
99088901 ATTT
1 ATTT
99088905 AATTGCTCCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (20 bp):
ATTTGATTCCAATCAAATCG
Found at i:99092714 original size:127 final size:125
Alignment explanation
Indices: 99092540--99092847 Score: 337
Period size: 126 Copynumber: 2.4 Consensus size: 125
99092530 ACATAAGAAT
* *
99092540 ATATTTCGTGTTTGGAAGTTTGAGAAATCGTGCCAAATCGTGCTGGGTTACGACTTTTTCATTTA
1 ATATTTCGTATTTGGAAGTTTGAGAAATCGTGCCAAATCGTGCTGGGTTACGA-TTTTCCATTTA
* * *** * * * *
99092605 ACTGAACTATGGAATATCCTTGTGAGATTTCATCCATGTTTTCTTAAATTAAAATGAGGCA
65 ACTAAAATACAAAATATCCTTGTAAAATTTCATCCATGTTTTCTCAAATTAAAATAAGGCA
* * * * * * * *
99092666 GTATTTCGTATTTGGGGAGTTTGGGAGATCGTGCCCAATCGTGTTGGGTTTCGATTTTCCATTTG
1 ATATTTCGTATTT-GGAAGTTTGAGAAATCGTGCCAAATCGTGCTGGGTTACGATTTTCCATTTA
* *
99092731 ACTAAAATACAAAATATCCTTTTAAAATTTTATCCATGTTTTCTCAAATTAAAATAAGGCA
65 ACTAAAATACAAAATATCCTTGTAAAATTTCATCCATGTTTTCTCAAATTAAAATAAGGCA
* * * * * * * *
99092792 ATGTTTCGTATTTAGAAATTCGATAAATCGTGCCCATTCGTGCTGGGTTTCGATTT
1 ATATTTCGTATTTGGAAGTTTGAGAAATCGTGCCAAATCGTGCTGGGTTACGATTT
99092848 ACTGTTTGAG
Statistics
Matches: 149, Mismatches: 32, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
125 34 0.23
126 81 0.54
127 34 0.23
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (125 bp):
ATATTTCGTATTTGGAAGTTTGAGAAATCGTGCCAAATCGTGCTGGGTTACGATTTTCCATTTAA
CTAAAATACAAAATATCCTTGTAAAATTTCATCCATGTTTTCTCAAATTAAAATAAGGCA
Found at i:99094331 original size:16 final size:16
Alignment explanation
Indices: 99094310--99094377 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
99094300 TTTGGTTCGC
99094310 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
99094326 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
99094342 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
99094358 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
99094374 TGTA
1 TGTA
99094378 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:99094646 original size:17 final size:17
Alignment explanation
Indices: 99094605--99094745 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
99094595 AACATAATTA
99094605 TTATT-AAATATAT--T
1 TTATTAAAATATATAAT
* *
99094619 TTTTTATAATATATAAT
1 TTATTAAAATATATAAT
99094636 TTGA-TAAAATATATGAAT
1 TT-ATTAAAATATAT-AAT
99094654 TTATTAAAAT-TATAAT
1 TTATTAAAATATATAAT
* * *
99094670 ATA-TAATATTATAAAAT
1 TTATTAA-AATATATAAT
* *
99094687 ATAATTTAAAATA-ATTA-
1 -TTA-TTAAAATATATAAT
99094704 TTATT--AA-ATATAAT
1 TTATTAAAATATATAAT
**
99094718 TTAACAAAAATATATAAT
1 TT-ATTAAAATATATAAT
*
99094736 TTAATAAAAT
1 TTATTAAAAT
99094746 TCTTAGTATT
Statistics
Matches: 92, Mismatches: 18, Indels: 31
0.65 0.13 0.22
Matches are distributed among these distances:
12 1 0.01
13 5 0.05
14 6 0.07
15 13 0.14
16 9 0.10
17 29 0.32
18 23 0.25
19 3 0.03
20 3 0.03
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (17 bp):
TTATTAAAATATATAAT
Found at i:99094673 original size:24 final size:22
Alignment explanation
Indices: 99094643--99094691 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 22
99094633 AATTTGATAA
99094643 AATATATGAAT-TTATTAAAATTAT
1 AATATAT-AATATTA-TAAAA-TAT
99094667 AATATATAATATTATAAAATAT
1 AATATATAATATTATAAAATAT
99094689 AAT
1 AAT
99094692 TTAAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.25
23 8 0.33
24 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATATATAATATTATAAAATAT
Found at i:99094682 original size:15 final size:15
Alignment explanation
Indices: 99094662--99094717 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
99094652 ATTTATTAAA
*
99094662 ATTATAATATATAAT
1 ATTATAAAATATAAT
99094677 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
99094690 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
99094703 ATTATTAAATATAAT
1 ATTATAAAATATAAT
99094718 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:99094712 original size:26 final size:25
Alignment explanation
Indices: 99094672--99094734 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
99094662 ATTATAATAT
99094672 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATAAAATATAATTTAAA
*
99094697 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATAAAATATAATTTAA-A
*
99094724 AAAATA-TATAA
1 ATAATATTATAA
99094735 TTTAATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 8 0.24
26 21 0.64
27 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATATTATAAAATATAATTTAAA
Found at i:99098151 original size:37 final size:37
Alignment explanation
Indices: 99098081--99098175 Score: 100
Period size: 37 Copynumber: 2.6 Consensus size: 37
99098071 TATTTTCAAT
* * * * * *
99098081 TTATCTTATTGTTGTTTTTTATTTATTGTGATAGATG
1 TTATCTTATTGTTGTTTTATACTGACTGCGATAGATC
* *
99098118 TTATCTTATTGTTATTTTATACTGACTGCGATAGTTC
1 TTATCTTATTGTTGTTTTATACTGACTGCGATAGATC
* *
99098155 TTATTTTATTATTGTTTTATA
1 TTATCTTATTGTTGTTTTATA
99098176 GGAATTGTGA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.21, C:0.06, G:0.13, T:0.60
Consensus pattern (37 bp):
TTATCTTATTGTTGTTTTATACTGACTGCGATAGATC
Found at i:99102488 original size:12 final size:13
Alignment explanation
Indices: 99102463--99102487 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99102453 TAGCAGTCCA
99102463 AATTAAAAATTTT
1 AATTAAAAATTTT
99102476 AATTAAAAATTT
1 AATTAAAAATTT
99102488 ATTTTCATCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATTAAAAATTTT
Found at i:99105050 original size:24 final size:24
Alignment explanation
Indices: 99104991--99105050 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
99104981 ATAATCAATT
*
99104991 AATATTTTTATATTTAAAATTATTT
1 AATATTTTT-TATTTAAAATTATTA
* **
99105016 AATCTAATTTATTT-AAATATATTA
1 AATATTTTTTATTTAAAAT-TATTA
99105040 AATATTTTTTA
1 AATATTTTTTA
99105051 AAAATATCGA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
23 4 0.15
24 17 0.63
25 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
AATATTTTTTATTTAAAATTATTA
Found at i:99111345 original size:108 final size:108
Alignment explanation
Indices: 99111193--99111434 Score: 315
Period size: 108 Copynumber: 2.2 Consensus size: 108
99111183 ATTTTCATTG
* * * * * *
99111193 CGGCTTATCTTTTGAGGACTGTGTGTATCTTCATTCCGGTTTATATCTCGAGCTTTTTGTGCATC
1 CGGCTTCTCTTTTGAGGACTTTGTGTACCTCCATTCCAGATTATATCTCGAGCTTTTTGTGCATC
** *
99111258 TTCATTA-GGATTTATATGTTGAGGACTACTCATGTTAGCATCG
66 TTCATTATGG-TTTATACATTGAGGACTACTCATGTTAGCATCA
* * * *
99111301 CGGTTTCTCTTTTTAGGACTTTGTGTACCTCCATTCCAGATTATATCTTGAGGTTTTTGTGCATC
1 CGGCTTCTCTTTTGAGGACTTTGTGTACCTCCATTCCAGATTATATCTCGAGCTTTTTGTGCATC
* *
99111366 TTCATTATTGTTTATACATTGAGGACTACTCATGTTTGCATCA
66 TTCATTATGGTTTATACATTGAGGACTACTCATGTTAGCATCA
* *
99111409 TGGCTTCTCTTCTGAGGACTTTGTGT
1 CGGCTTCTCTTTTGAGGACTTTGTGT
99111435 GTCATCATTG
Statistics
Matches: 114, Mismatches: 19, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
108 113 0.99
109 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (108 bp):
CGGCTTCTCTTTTGAGGACTTTGTGTACCTCCATTCCAGATTATATCTCGAGCTTTTTGTGCATC
TTCATTATGGTTTATACATTGAGGACTACTCATGTTAGCATCA
Found at i:99111572 original size:36 final size:35
Alignment explanation
Indices: 99111532--99111610 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 35
99111522 AATCTCTGAA
*
99111532 GGACTTTG-TGTGTTCTCACTCAGGTTTGTTCCTTG
1 GGACTTTGAT-TGTTCTCACTCAGGTTGGTTCCTTG
* *
99111567 TGGACTTAGATTGTTTTCACTCAGGTTGGTTCCTTG
1 -GGACTTTGATTGTTCTCACTCAGGTTGGTTCCTTG
99111603 GGTACTTT
1 GG-ACTTT
99111611 CTGAGTGTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
35 2 0.05
36 34 0.92
37 1 0.03
ACGTcount: A:0.11, C:0.18, G:0.25, T:0.46
Consensus pattern (35 bp):
GGACTTTGATTGTTCTCACTCAGGTTGGTTCCTTG
Found at i:99113612 original size:29 final size:29
Alignment explanation
Indices: 99113570--99113630 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
99113560 ACCAATAAAA
99113570 GACTTATAACAATTAAACTTTCTTTCAAT
1 GACTTATAACAATTAAACTTTCTTTCAAT
99113599 GACTTATAACAATTAAACTTTCTTTCAAT
1 GACTTATAACAATTAAACTTTCTTTCAAT
99113628 GAC
1 GAC
99113631 CTTTATGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.39
Consensus pattern (29 bp):
GACTTATAACAATTAAACTTTCTTTCAAT
Found at i:99118616 original size:25 final size:24
Alignment explanation
Indices: 99118556--99118624 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
99118546 GAGTTTTATT
* *
99118556 TTTTAATAGTTTTTAATTTTAAAAA
1 TTTTAAT-TTTTTTATTTTTAAAAA
* *
99118581 TATGAATTTTTTTTATTTTTAAAAAA
1 TTTTAA-TTTTTTTATTTTT-AAAAA
*
99118607 TTTTAATTTTTATATTTT
1 TTTTAATTTTTTTATTTT
99118625 ATTTAGAATA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
25 25 0.71
26 10 0.29
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (24 bp):
TTTTAATTTTTTTATTTTTAAAAA
Found at i:99128137 original size:133 final size:132
Alignment explanation
Indices: 99127850--99128118 Score: 479
Period size: 130 Copynumber: 2.0 Consensus size: 132
99127840 TTTTGATTTA
* *
99127850 ATAACACAACAAAAACTTACACCTACTTACTTTTGGGAGGTAATTTTCTTTTATTTTTTGATAAA
1 ATAAAACAACAAAAACATACACCTACTTACTTTTGGGAGGTAATTTTCTTTTATTTTTTGAT-AA
99127915 AAAGAAGTACAATGTTGACATTTAATTCCGAACGAGTCCCTATTTAGCATACACGATTAGCACTT
65 AAAGAAGTACAATGTTGACATTTAATTCCGAACGAGTCCCTATTTAGCATACACGATTAGCACTT
99127980 TGC
130 TGC
* *
99127983 ATAACACAACAAAAACTTACACCTACTTACTTTTGGGAGGTAATTTTCTTTTATTTTTTGAT-AA
1 ATAAAACAACAAAAACATACACCTACTTACTTTTGGGAGGTAATTTTCTTTTATTTTTTGATAAA
99128047 AA-AAGTACAATGTTGACATTTAATTCCGAACGAGTCCCTATTTAGCATACACGATTAGCACTTT
66 AAGAAGTACAATGTTGACATTTAATTCCGAACGAGTCCCTATTTAGCATACACGATTAGCACTTT
99128111 GC
131 GC
99128113 ATAAAA
1 ATAAAA
99128119 TTTGGGAAAT
Statistics
Matches: 135, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
130 69 0.51
131 4 0.03
133 62 0.46
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (132 bp):
ATAAAACAACAAAAACATACACCTACTTACTTTTGGGAGGTAATTTTCTTTTATTTTTTGATAAA
AAGAAGTACAATGTTGACATTTAATTCCGAACGAGTCCCTATTTAGCATACACGATTAGCACTTT
GC
Found at i:99131210 original size:17 final size:17
Alignment explanation
Indices: 99131172--99131213 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
99131162 AATTTTATTT
* *
99131172 TTATAATTTTTTGGTTAA
1 TTATAA-TTTTGGGTAAA
99131190 -TATAATTTTGGGTAAA
1 TTATAATTTTGGGTAAA
99131206 TTATAATT
1 TTATAATT
99131214 AGATTTTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (17 bp):
TTATAATTTTGGGTAAA
Found at i:99131551 original size:18 final size:19
Alignment explanation
Indices: 99131512--99131555 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 19
99131502 ATGTATGTAA
99131512 TAAAATGTGCATAATAAAAT
1 TAAAATGT-CATAATAAAAT
99131532 TAAAATGT-ATAA-AAATAT
1 TAAAATGTCATAATAAA-AT
99131550 TAAAAT
1 TAAAAT
99131556 AATATTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.13
18 12 0.52
20 8 0.35
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (19 bp):
TAAAATGTCATAATAAAAT
Found at i:99134493 original size:19 final size:19
Alignment explanation
Indices: 99134456--99134495 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
99134446 GTTAATTTAT
* *
99134456 TTAAAATATAAATATTAAA
1 TTAAAATATAAAAAATAAA
*
99134475 TTAAAATTTAAAAAATAAA
1 TTAAAATATAAAAAATAAA
99134494 TT
1 TT
99134496 TATAGTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TTAAAATATAAAAAATAAA
Found at i:99134674 original size:17 final size:18
Alignment explanation
Indices: 99134652--99134685 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
99134642 AATCACATAT
99134652 AATATA-TAAAATTTAAA
1 AATATATTAAAATTTAAA
*
99134669 AATATATTTAAATTTAA
1 AATATATTAAAATTTAA
99134686 GTAATTGCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AATATATTAAAATTTAAA
Found at i:99134837 original size:22 final size:22
Alignment explanation
Indices: 99134812--99134855 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
99134802 TATTTAATAA
*
99134812 TTTTT-TATAATTTATATATAT
1 TTTTTCTAGAATTTATATATAT
* *
99134833 TTTTTCTAGATTTTGTATATAT
1 TTTTTCTAGAATTTATATATAT
99134855 T
1 T
99134856 ATTATGAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (22 bp):
TTTTTCTAGAATTTATATATAT
Found at i:99134868 original size:22 final size:22
Alignment explanation
Indices: 99134843--99134890 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
99134833 TTTTTCTAGA
99134843 TTTTGTATATATT-ATTATGAAT
1 TTTTGTATATATTCATT-TGAAT
* *
99134865 TTTTTTATATATTCATTTTAAT
1 TTTTGTATATATTCATTTGAAT
99134887 TTTT
1 TTTT
99134891 CATATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTTGTATATATTCATTTGAAT
Found at i:99154213 original size:18 final size:18
Alignment explanation
Indices: 99154190--99154224 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
99154180 GACCGTTTAC
99154190 GGTACTATTCACGTATAT
1 GGTACTATTCACGTATAT
*
99154208 GGTACTGTTCACGTATA
1 GGTACTATTCACGTATA
99154225 CAGTAGTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (18 bp):
GGTACTATTCACGTATAT
Found at i:99155146 original size:41 final size:41
Alignment explanation
Indices: 99155055--99155254 Score: 260
Period size: 41 Copynumber: 4.9 Consensus size: 41
99155045 GTAAAACATA
* * *
99155055 GAGCAATAGCGGCGTTTTTGGTAAAATGCCGCT-AAAACCA
1 GAGCATTAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCG
* ** *
99155095 GAGCAATAGCGGTATTTTTGTTAAAACGCCGCTAAAAACCG
1 GAGCATTAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCG
99155136 GAGCATTAGCGGCGCTTTTT-GTAAAACGCCGCTAAAAACCG
1 GAGCATTAGCGGCG-TTTTTGGTAAAACGCCGCTAAAAACCG
* * * * *
99155177 GATCATTAGCAGCGCTTTTGGTATAACGCCGCTAAAAACTG
1 GAGCATTAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCG
*
99155218 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
1 GAGCATTAGCGGCGTTTTTGGTAAAACGCCGCTAAAA
99155255 GTCATATAAC
Statistics
Matches: 140, Mismatches: 17, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
40 33 0.24
41 102 0.73
42 5 0.04
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.23
Consensus pattern (41 bp):
GAGCATTAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCG
Found at i:99155684 original size:14 final size:14
Alignment explanation
Indices: 99155662--99155709 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
99155652 TTAATTATCA
*
99155662 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
99155676 TTATGGTTTAAGCT
1 TTATGGTTTAAGGT
*
99155690 ATATGGGTTTAAGGT
1 TTAT-GGTTTAAGGT
99155705 TTATG
1 TTATG
99155710 AGTTAACTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Done.