Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 304 of 311
Found at i:99155709 original size:15 final size:15
Alignment explanation
Indices: 99155667--99155709 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
99155657 TATCATTATA
99155667 GTTTAAGGTTTAT-G
1 GTTTAAGGTTTATGG
* *
99155681 GTTTAAGCTATATGG
1 GTTTAAGGTTTATGG
99155696 GTTTAAGGTTTATG
1 GTTTAAGGTTTATG
99155710 AGTTAACTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.23, C:0.02, G:0.28, T:0.47
Consensus pattern (15 bp):
GTTTAAGGTTTATGG
Found at i:99155783 original size:14 final size:14
Alignment explanation
Indices: 99155731--99155803 Score: 62
Period size: 14 Copynumber: 5.4 Consensus size: 14
99155721 GTTTAAAGGT
99155731 GGGTTAAGGGTT--
1 GGGTTAAGGGTTAA
99155743 GGGTTTAA-GGTTAA
1 GGG-TTAAGGGTTAA
* *
99155757 GTGTTAGGGGTTAA
1 GGGTTAAGGGTTAA
* *
99155771 GGGTTAAGTGTTAG
1 GGGTTAAGGGTTAA
* *
99155785 GGGTTTAGGGTTTA
1 GGGTTAAGGGTTAA
99155799 GGGTT
1 GGGTT
99155804 TAATGTTTAG
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
12 7 0.15
13 7 0.15
14 33 0.70
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (14 bp):
GGGTTAAGGGTTAA
Found at i:99155804 original size:14 final size:14
Alignment explanation
Indices: 99155785--99155836 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
99155775 TAAGTGTTAG
*
99155785 GGGTTTAGGGTTTA
1 GGGTTTAGAGTTTA
99155799 GGGTTTA-ATGTTTA
1 GGGTTTAGA-GTTTA
* *
99155813 GAGATTAAGAGTTTA
1 G-GGTTTAGAGTTTA
99155828 GGGTTTAGA
1 GGGTTTAGA
99155837 TTAGTTAGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
14 19 0.63
15 10 0.33
16 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.35, T:0.40
Consensus pattern (14 bp):
GGGTTTAGAGTTTA
Found at i:99156002 original size:22 final size:22
Alignment explanation
Indices: 99155977--99156019 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
99155967 GAGTTATTAT
99155977 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGTTTAT-GATTTATGGG
*
99155999 TTTAGGGTTTATGATTTATGG
1 TTTAAGGTTTATGATTTATGG
99156020 TTATGTAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
TTTAAGGTTTATGATTTATGGG
Found at i:99159270 original size:30 final size:30
Alignment explanation
Indices: 99159234--99159294 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
99159224 GTCTTCCAAA
* *
99159234 TAAGTTCCGTGTTATTTCAACTCGTGAATT
1 TAAGTTCCGTGCTATATCAACTCGTGAATT
*
99159264 TAAGTTCTGTGCTATATCAACTCGTGAATT
1 TAAGTTCCGTGCTATATCAACTCGTGAATT
99159294 T
1 T
99159295 TGATCATGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43
Consensus pattern (30 bp):
TAAGTTCCGTGCTATATCAACTCGTGAATT
Found at i:99160750 original size:21 final size:21
Alignment explanation
Indices: 99160724--99160763 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
99160714 CTTAGAGCGA
99160724 AGGCAGCAGCGAGGGAGGCAG
1 AGGCAGCAGCGAGGGAGGCAG
99160745 AGGCAGCAGCGAGGGAGGC
1 AGGCAGCAGCGAGGGAGGC
99160764 GGAGCAGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.20, G:0.53, T:0.00
Consensus pattern (21 bp):
AGGCAGCAGCGAGGGAGGCAG
Found at i:99161124 original size:42 final size:43
Alignment explanation
Indices: 99161061--99161203 Score: 198
Period size: 43 Copynumber: 3.3 Consensus size: 43
99161051 ATTGGGCAAC
* * *
99161061 TTAGCGGCGTTTTTTAAAAAAGTGCCGCGAAAGGACCTGATCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCTGGTCT
* * * * *
99161104 TTAGTGGCG-TTTTTATAAAAGCACCGCAAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCTGGTCT
*
99161146 TTAACGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCTGGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCTGGTCT
99161189 TTAGCGGCGTTTTTT
1 TTAGCGGCGTTTTTT
99161204 CCTAAAAACG
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 33 0.39
43 51 0.61
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCTGGTCT
Found at i:99168988 original size:17 final size:15
Alignment explanation
Indices: 99168966--99169001 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
99168956 AGACCAGCCT
99168966 AAATCTAAAATATTATA
1 AAATCTAAAA-A-TATA
99168983 AAATCTAAAAATATA
1 AAATCTAAAAATATA
99168998 AAAT
1 AAAT
99169002 GAATAAAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
16 1 0.05
17 10 0.53
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATCTAAAAATATA
Found at i:99170691 original size:43 final size:42
Alignment explanation
Indices: 99170629--99170781 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 42
99170619 GGCGTGCCAC
* * *
99170629 AAAAGATCATGACTTTTAGCGGCGTTTGTAGGAAAAGCGCCGTT
1 AAAAG-TCACGACTTTTAGCGGCGTTTGT-GGGAAAGCGCCGCT
* * *
99170673 AAAAGTCATGACTTTTAGCGGCGTTTGTGGTGGAAGCGCCACT
1 AAAAGTCACGACTTTTAGCGGCGTTTGTGG-GAAAGCGCCGCT
* * * *
99170716 AAAAGTCACGGCTTTTAGCGCCGTTTGTGGGGAATGTGCCGCT
1 AAAAGTCACGACTTTTAGCGGCGTTTGT-GGGAAAGCGCCGCT
* *
99170759 AAAAGTCACGAATTTTAGGGGCG
1 AAAAGTCACGACTTTTAGCGGCG
99170782 CTTTTGTTAC
Statistics
Matches: 92, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
42 2 0.02
43 83 0.90
44 7 0.08
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (42 bp):
AAAAGTCACGACTTTTAGCGGCGTTTGTGGGAAAGCGCCGCT
Found at i:99170731 original size:86 final size:86
Alignment explanation
Indices: 99170624--99170781 Score: 201
Period size: 86 Copynumber: 1.8 Consensus size: 86
99170614 TTTACGGCGT
* * * * *
99170624 GCCACAAAAGATCATGACTTTTAGCGGCGTTTGTAGGAAAAGCGCCGTTAAAAGTCATGACTTTT
1 GCCACAAAAGATCACGACTTTTAGCGCCGTTTGTAGGAAAAGCGCCGCTAAAAGTCACGAATTTT
99170689 AGCGGCGTTTGTGGTGGAAGC
66 AGCGGCGTTTGTGGTGGAAGC
* * * * *
99170710 GCCACTAAAAG-TCACGGCTTTTAGCGCCGTTTGTGGGGAATGTGCCGCTAAAAGTCACGAATTT
1 GCCAC-AAAAGATCACGACTTTTAGCGCCGTTTGTAGGAAAAGCGCCGCTAAAAGTCACGAATTT
*
99170774 TAGGGGCG
65 TAGCGGCG
99170782 CTTTTGTTAC
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
86 55 0.92
87 5 0.08
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (86 bp):
GCCACAAAAGATCACGACTTTTAGCGCCGTTTGTAGGAAAAGCGCCGCTAAAAGTCACGAATTTT
AGCGGCGTTTGTGGTGGAAGC
Found at i:99170936 original size:33 final size:32
Alignment explanation
Indices: 99170858--99170970 Score: 156
Period size: 31 Copynumber: 3.5 Consensus size: 32
99170848 TTCCAGCATT
* * *
99170858 AAATCCAACCAAAAACAGCAAATATAGCAT-G
1 AAATACAACCAAAAACAGCAAATATAACATAA
* *
99170889 AAATCCAACCAAAAACAGCAAATGTAACATAAA
1 AAATACAACCAAAAACAGCAAATATAACAT-AA
*
99170922 AAATACAACCAAAAACAACAAATATAACATAA
1 AAATACAACCAAAAACAGCAAATATAACATAA
99170954 AAATACAACCAAAAACA
1 AAATACAACCAAAAACA
99170971 TTAAATCTAA
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
31 28 0.38
32 19 0.26
33 27 0.36
ACGTcount: A:0.63, C:0.21, G:0.04, T:0.12
Consensus pattern (32 bp):
AAATACAACCAAAAACAGCAAATATAACATAA
Found at i:99171673 original size:13 final size:14
Alignment explanation
Indices: 99171646--99171674 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
99171636 ACTAACGACG
99171646 AATTAAACTATTAT
1 AATTAAACTATTAT
99171660 AATTAAAC-ATTAT
1 AATTAAACTATTAT
99171673 AA
1 AA
99171675 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAACTATTAT
Found at i:99178617 original size:73 final size:74
Alignment explanation
Indices: 99178400--99178645 Score: 316
Period size: 74 Copynumber: 3.3 Consensus size: 74
99178390 TTTTTGCAGT
*
99178400 GTTTTCTAAAAAACGCCACTAATAGTCAGACAAAAACGACAGCGTTTTCTACACGCTTAAAACAT
1 GTTTTCTTAAAAACGCCACTAATAGTCAGACAAAAACGACAGCGTTTTCTACACGCTTAAAACAT
99178465 ATTTGCGGC
66 ATTTGCGGC
* * *
99178474 GTTTTCTTTAAAACGCCACTAATAGTCAGACAGAAACGACATCGTTTTCTACACGCTTAAAACAT
1 GTTTTCTTAAAAACGCCACTAATAGTCAGACAAAAACGACAGCGTTTTCTACACGCTTAAAACAT
99178539 ATTTGCGGC
66 ATTTGCGGC
* * * * * **
99178548 GTTTTCTTAAAAATGCCACTAAAAGT-AAAAAAAAACGACAGCATTTTGC-ACACTTTTAAAACA
1 GTTTTCTTAAAAACGCCACTAATAGTCAGACAAAAACGACAGCGTTTT-CTACACGCTTAAAACA
*
99178611 TTTTTGCGGGC
65 TATTTGC-GGC
* *
99178622 GTTTTTTTGCGAAAACGCCACTAA
1 GTTTTCTT--AAAAACGCCACTAA
99178646 AGGATATCTT
Statistics
Matches: 150, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
73 34 0.23
74 104 0.69
76 12 0.08
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (74 bp):
GTTTTCTTAAAAACGCCACTAATAGTCAGACAAAAACGACAGCGTTTTCTACACGCTTAAAACAT
ATTTGCGGC
Found at i:99179194 original size:16 final size:16
Alignment explanation
Indices: 99179173--99179203 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
99179163 AGACTTAGGG
99179173 TTTAAAGGTTTAGTGA
1 TTTAAAGGTTTAGTGA
99179189 TTTAAAGGTTTAGTG
1 TTTAAAGGTTTAGTG
99179204 GGTTAGGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (16 bp):
TTTAAAGGTTTAGTGA
Found at i:99185763 original size:30 final size:31
Alignment explanation
Indices: 99185712--99185771 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
99185702 TTAGTTACCA
*
99185712 AACTATTAAATTTGTTCTATTTTGGTCACTT
1 AACTATTAAATTTGTTCTATTTTAGTCACTT
* *
99185743 AACTATT-AATTTTTTTTATTTTAGTCACT
1 AACTATTAAATTTGTTCTATTTTAGTCACT
99185772 CAATGATTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.27, C:0.12, G:0.07, T:0.55
Consensus pattern (31 bp):
AACTATTAAATTTGTTCTATTTTAGTCACTT
Found at i:99201280 original size:13 final size:13
Alignment explanation
Indices: 99201262--99201293 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
99201252 CCGTTAACAT
99201262 GTTAATTTTAATC
1 GTTAATTTTAATC
99201275 GTTAATTTTAATC
1 GTTAATTTTAATC
99201288 GTTAAT
1 GTTAAT
99201294 ATAAGGGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.53
Consensus pattern (13 bp):
GTTAATTTTAATC
Found at i:99204872 original size:18 final size:18
Alignment explanation
Indices: 99204851--99204885 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
99204841 TGAATATGCA
*
99204851 TTGTCGTTGCTGTTGCTG
1 TTGTCGTTGCTGCTGCTG
*
99204869 TTGTTGTTGCTGCTGCT
1 TTGTCGTTGCTGCTGCT
99204886 CGTTCCTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.17, G:0.31, T:0.51
Consensus pattern (18 bp):
TTGTCGTTGCTGCTGCTG
Found at i:99218506 original size:14 final size:14
Alignment explanation
Indices: 99218487--99218533 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
99218477 ATTTTTAATC
99218487 ACATAAATATTTAA
1 ACATAAATATTTAA
99218501 ACAT-AATATTTTAA
1 ACATAAATA-TTTAA
99218515 A-A-AAATATTTAA
1 ACATAAATATTTAA
*
99218527 AGATAAA
1 ACATAAA
99218534 ATATATGAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 6 0.21
13 10 0.34
14 13 0.45
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (14 bp):
ACATAAATATTTAA
Found at i:99221119 original size:21 final size:21
Alignment explanation
Indices: 99221093--99221138 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
99221083 AAATAACAAT
*
99221093 AAAATAACAACAAAATAGTGA
1 AAAATAACAACAAAATAGTAA
* * *
99221114 AAAATAGCAAGAAAATGGTAA
1 AAAATAACAACAAAATAGTAA
99221135 AAAA
1 AAAA
99221139 GTAATATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.67, C:0.07, G:0.13, T:0.13
Consensus pattern (21 bp):
AAAATAACAACAAAATAGTAA
Found at i:99222737 original size:15 final size:15
Alignment explanation
Indices: 99222717--99222748 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
99222707 TTCATGTCTA
99222717 TTTTACTGTGCATAT
1 TTTTACTGTGCATAT
99222732 TTTTACTGTGCATAT
1 TTTTACTGTGCATAT
99222747 TT
1 TT
99222749 GGGTTTCGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.56
Consensus pattern (15 bp):
TTTTACTGTGCATAT
Found at i:99235638 original size:16 final size:16
Alignment explanation
Indices: 99235617--99235647 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
99235607 GATATTTTAA
99235617 TATATTATATTAATAT
1 TATATTATATTAATAT
*
99235633 TATATTATGTTAATA
1 TATATTATATTAATA
99235648 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:99243674 original size:19 final size:19
Alignment explanation
Indices: 99243618--99243674 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
99243608 ATAATTTTTT
*
99243618 AAAAGTAAAAATAATATATA
1 AAAAGTAAAAAAAAT-TATA
* **
99243638 AAAATTAAAAAATGTTATA
1 AAAAGTAAAAAAAATTATA
*
99243657 AGAAGTAAAAAAAATTAT
1 AAAAGTAAAAAAAATTAT
99243675 TTGAAGAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 18 0.62
20 11 0.38
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (19 bp):
AAAAGTAAAAAAAATTATA
Found at i:99244349 original size:14 final size:14
Alignment explanation
Indices: 99244332--99244362 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
99244322 AAATATATTC
*
99244332 TTTAGTTTTTTTAA
1 TTTAATTTTTTTAA
99244346 TTTAATTTTTTTAA
1 TTTAATTTTTTTAA
99244360 TTT
1 TTT
99244363 TTTTAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (14 bp):
TTTAATTTTTTTAA
Found at i:99244358 original size:9 final size:9
Alignment explanation
Indices: 99244301--99244375 Score: 61
Period size: 9 Copynumber: 8.4 Consensus size: 9
99244291 AAAATTATTA
*
99244301 TTTTGATTT
1 TTTTAATTT
99244310 TTTT-ATTT
1 TTTTAATTT
99244318 TTTTAAATATAT
1 TTTT-AAT-T-T
*
99244330 TCTTTAGTTT
1 T-TTTAATTT
99244340 TTTTAA---
1 TTTTAATTT
99244346 -TTTAATTT
1 TTTTAATTT
99244354 TTTTAATTT
1 TTTTAATTT
99244363 TTTTAATTT
1 TTTTAATTT
99244372 TTTT
1 TTTT
99244376 TGCAACTTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
5 5 0.09
8 8 0.15
9 29 0.53
10 4 0.07
11 2 0.04
12 4 0.07
13 3 0.05
ACGTcount: A:0.21, C:0.01, G:0.03, T:0.75
Consensus pattern (9 bp):
TTTTAATTT
Found at i:99244358 original size:23 final size:21
Alignment explanation
Indices: 99244306--99244376 Score: 74
Period size: 23 Copynumber: 3.3 Consensus size: 21
99244296 TATTATTTTG
*
99244306 ATTTTTTTATTTTTTTAA-AT
1 ATTTTTTTATTTTTTTAATTT
*
99244326 ATATTCTTTAGTTTTTTTAATTT
1 AT-TTTTTTA-TTTTTTTAATTT
99244349 AATTTTTTTAATTTTTTTAATTT
1 -ATTTTTTT-ATTTTTTTAATTT
99244372 -TTTTT
1 ATTTTT
99244377 GCAACTTTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
20 2 0.05
21 11 0.26
22 9 0.21
23 18 0.42
24 3 0.07
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.75
Consensus pattern (21 bp):
ATTTTTTTATTTTTTTAATTT
Found at i:99249167 original size:16 final size:15
Alignment explanation
Indices: 99249142--99249173 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
99249132 ATATCAGTAC
99249142 CACTTTTACTTTATG
1 CACTTTTACTTTATG
99249157 CACTGTTTACTTTATG
1 CACT-TTTACTTTATG
99249173 C
1 C
99249174 TTTAATGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.19, C:0.22, G:0.09, T:0.50
Consensus pattern (15 bp):
CACTTTTACTTTATG
Found at i:99253970 original size:11 final size:11
Alignment explanation
Indices: 99253954--99253984 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
99253944 TTAAGTTCAA
99253954 TTCTTGATTAT
1 TTCTTGATTAT
99253965 TTCTTGATTAT
1 TTCTTGATTAT
99253976 TTCTTGATT
1 TTCTTGATT
99253985 TTTTTGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.16, C:0.10, G:0.10, T:0.65
Consensus pattern (11 bp):
TTCTTGATTAT
Found at i:99255493 original size:31 final size:31
Alignment explanation
Indices: 99255455--99255603 Score: 208
Period size: 31 Copynumber: 4.8 Consensus size: 31
99255445 ACAAATGACA
*
99255455 AGTGAAAAGTGGTAGCTTCGGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
99255486 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
99255517 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
99255548 AGTGAAAAATGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
99255579 AGTGGATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
99255604 AAGTGACAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:99255739 original size:46 final size:49
Alignment explanation
Indices: 99255674--99255797 Score: 155
Period size: 49 Copynumber: 2.6 Consensus size: 49
99255664 CTACTATATG
* * *
99255674 AGACCATATCTAGGATATGGCATC-A-GTGAGATATGTGATT-CGTGTA
1 AGACCATAGCTAGGCTATGGCATCGATATGAGATATGTGATTACGTGTA
* *
99255720 AGACCATAGCTCGGCTATGGCATCGATATGTGATATGTGATTACGTGTA
1 AGACCATAGCTAGGCTATGGCATCGATATGAGATATGTGATTACGTGTA
* * *
99255769 AGACCATAGCTGGGCTATGACATCTATAT
1 AGACCATAGCTAGGCTATGGCATCGATAT
99255798 ATGAAGATGT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
46 21 0.31
47 1 0.01
48 13 0.19
49 32 0.48
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (49 bp):
AGACCATAGCTAGGCTATGGCATCGATATGAGATATGTGATTACGTGTA
Found at i:99261930 original size:3 final size:3
Alignment explanation
Indices: 99261922--99261949 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
99261912 AATTAAATTG
99261922 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
99261950 ACTTTTATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:99275487 original size:3 final size:3
Alignment explanation
Indices: 99275479--99275524 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
99275469 GAAACTCATT
*
99275479 TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
99275525 TTACTTGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:99282855 original size:46 final size:46
Alignment explanation
Indices: 99282785--99282951 Score: 232
Period size: 46 Copynumber: 3.6 Consensus size: 46
99282775 TGCTATAGTG
* *
99282785 TCTTTCAACTATGGTTTTAATCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTAATCA-TTTCATGTCATGTTGCCATGGTA
* * *
99282831 TCTTTCAACAATGGTCTTATTCATTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTAATCATTTCATGTCATGTTGCCATGGTA
*
99282877 TCTTTCAACCATGGTCTTACA-CATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTA-ATCATTTCATGTCATGTTGCCATGGTA
99282923 TCTTTCAACCATGGTCTTACA-CATTTCAT
1 TCTTTCAACCATGGTCTTA-ATCATTTCAT
99282952 TTCAGGAAGC
Statistics
Matches: 111, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
45 4 0.04
46 107 0.96
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTAATCATTTCATGTCATGTTGCCATGGTA
Found at i:99286439 original size:25 final size:26
Alignment explanation
Indices: 99286392--99286482 Score: 98
Period size: 25 Copynumber: 3.6 Consensus size: 26
99286382 AAACATCGGA
* * *
99286392 AAGCTCAAGAGAGCC-ATTAATCAAG
1 AAGCTCATGAGAGCCAAATAATCAGG
99286417 AAGCTCATGAGAGCCAAAT-ATCAGG
1 AAGCTCATGAGAGCCAAATAATCAGG
* * *
99286442 ATGCTCATAAGAGCTAAATAAT-AGG
1 AAGCTCATGAGAGCCAAATAATCAGG
*
99286467 AAGCGCATGAGAGCCA
1 AAGCTCATGAGAGCCA
99286483 TGGTGTGTCC
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 50 0.93
26 4 0.07
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (26 bp):
AAGCTCATGAGAGCCAAATAATCAGG
Found at i:99292243 original size:27 final size:29
Alignment explanation
Indices: 99292188--99292246 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
99292178 TTCAATCACG
99292188 TAATTAAAAAATTATTATATATTTAATTT
1 TAATTAAAAAATTATTATATATTTAATTT
*
99292217 TAATTAAATACATT-TTATATA-TT-ATTT
1 TAATTAAA-AAATTATTATATATTTAATTT
99292244 TAA
1 TAA
99292247 CTTTTTATGC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 7 0.25
28 2 0.07
29 15 0.54
30 4 0.14
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (29 bp):
TAATTAAAAAATTATTATATATTTAATTT
Found at i:99299134 original size:25 final size:26
Alignment explanation
Indices: 99299085--99299135 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
99299075 AAATAATTTA
* *
99299085 AAATTTATAAATATATTCAGAAAAAT
1 AAATATATAAAAATATTCAGAAAAAT
*
99299111 AAATATATAAAAAT-TTCATAAAAAT
1 AAATATATAAAAATATTCAGAAAAAT
99299136 TCAAAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (26 bp):
AAATATATAAAAATATTCAGAAAAAT
Found at i:99299881 original size:26 final size:27
Alignment explanation
Indices: 99299823--99299877 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
99299813 TTAAAAATAT
* *
99299823 ATTT-AAAAAATAAAAGAATATTTATA
1 ATTTCAAAAAATAAAAGAATATTGAAA
99299849 ATTTCAAAAAATAAAA-AATA-TGAAA
1 ATTTCAAAAAATAAAAGAATATTGAAA
99299874 ATTT
1 ATTT
99299878 TCAATAATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 7 0.27
26 8 0.31
27 11 0.42
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (27 bp):
ATTTCAAAAAATAAAAGAATATTGAAA
Found at i:99302801 original size:42 final size:42
Alignment explanation
Indices: 99302740--99302901 Score: 175
Period size: 42 Copynumber: 3.7 Consensus size: 42
99302730 TCGTTTTCTC
** *
99302740 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATAAT
*
99302782 GATGCCATAGCCCAGCTATGGTCTTACACATATTCATC-T-AT
1 GATGCCATAGCCCAGCTATGGTCTTACACATCTTCA-CATAAT
**
99302823 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATAGC
1 -GATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TCACATAAT
99302873 GATGCCATAGCCCAGCTATGGTCTTACAC
1 GATGCCATAGCCCAGCTATGGTCTTACAC
99302902 GAATCACATA
Statistics
Matches: 102, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
41 2 0.02
42 62 0.61
43 1 0.01
45 2 0.02
48 2 0.02
49 33 0.32
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATAAT
Found at i:99303051 original size:31 final size:31
Alignment explanation
Indices: 99303013--99303099 Score: 149
Period size: 31 Copynumber: 2.8 Consensus size: 31
99303003 CTTGCCACTT
99303013 GTAGCCGGAGCTACCACTATTT-ACTGATCAG
1 GTAGCCGGAGCTACCACT-TTTCACTGATCAG
99303044 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
99303075 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
99303100 TGTCATTTGT
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
30 3 0.06
31 51 0.94
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:99303187 original size:50 final size:50
Alignment explanation
Indices: 99303075--99303251 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
99303065 CACTGATCAG
* *
99303075 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
99303126 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* * * * *
99303176 GTTGCCAAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAAATAACT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
99303226 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
99303252 ATTGCCATGG
Statistics
Matches: 114, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 90 0.79
51 24 0.21
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:99326937 original size:26 final size:26
Alignment explanation
Indices: 99326908--99327015 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
99326898 TGGTACAAAT
99326908 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
99326934 TGATAATGGATTAAGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
99326960 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
99326986 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
99327012 TGAT
1 TGAT
99327016 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:99328523 original size:25 final size:26
Alignment explanation
Indices: 99328495--99328546 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
99328485 TTTACAGTTT
99328495 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
99328520 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
99328546 T
1 T
99328547 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:99329710 original size:23 final size:23
Alignment explanation
Indices: 99329684--99329731 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
99329674 AATAATAAAA
99329684 ATAGTTATCCAATTGTGCCGTTC
1 ATAGTTATCCAATTGTGCCGTTC
99329707 ATAGTTATCCAATTGTGCCGTTC
1 ATAGTTATCCAATTGTGCCGTTC
99329730 AT
1 AT
99329732 CCTATTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.40
Consensus pattern (23 bp):
ATAGTTATCCAATTGTGCCGTTC
Found at i:99336627 original size:17 final size:18
Alignment explanation
Indices: 99336589--99336634 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
99336579 AAAACACGAG
99336589 ATTT-AATAA-TTTATAA
1 ATTTAAATAATTTTATAA
99336605 ATTTTAAATAATTTTAT-A
1 A-TTTAAATAATTTTATAA
99336623 ATTTAAATAATT
1 ATTTAAATAATT
99336635 CAACAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 1 0.04
17 14 0.52
18 7 0.26
19 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTTAAATAATTTTATAA
Found at i:99339515 original size:21 final size:22
Alignment explanation
Indices: 99339475--99339515 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
99339465 CAAGATGAAA
*
99339475 AAAACATTGAACATAACTAAAG
1 AAAACATTGAACACAACTAAAG
*
99339497 AAAACTTTG-ACACAACTAA
1 AAAACATTGAACACAACTAA
99339516 TAATGCATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.56, C:0.17, G:0.07, T:0.20
Consensus pattern (22 bp):
AAAACATTGAACACAACTAAAG
Found at i:99344530 original size:3 final size:3
Alignment explanation
Indices: 99344522--99344559 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
99344512 ACCATTAAAC
* *
99344522 CTT CTT CTT CTT CTT CTC CTT C-T CCT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
99344560 TTTTTTTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (3 bp):
CTT
Found at i:99348121 original size:17 final size:16
Alignment explanation
Indices: 99348095--99348161 Score: 66
Period size: 17 Copynumber: 4.2 Consensus size: 16
99348085 AATATATTAT
*
99348095 AAAATTTAAAAATTTTA
1 AAAATATAAAAA-TTTA
99348112 AAAATATAAAAATTT-
1 AAAATATAAAAATTTA
*
99348127 AAAATA-ACAAATTTA
1 AAAATATAAAAATTTA
* *
99348142 AAAGATAAAAAAAATTA
1 AAA-ATATAAAAATTTA
99348159 AAA
1 AAA
99348162 TTAATCAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
14 7 0.16
15 9 0.21
16 6 0.14
17 21 0.49
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (16 bp):
AAAATATAAAAATTTA
Found at i:99348161 original size:8 final size:8
Alignment explanation
Indices: 99348095--99348130 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
99348085 AATATATTAT
99348095 AAAATTTA
1 AAAATTTA
99348103 AAAATTTTA
1 AAAA-TTTA
*
99348112 AAAATATA
1 AAAATTTA
99348120 AAAATTTA
1 AAAATTTA
99348128 AAA
1 AAA
99348131 TAACAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATTTA
Found at i:99348175 original size:32 final size:30
Alignment explanation
Indices: 99348108--99348182 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 30
99348098 ATTTAAAAAT
* *
99348108 TTTAAAAATATAAAAATTTAAAATAACAAA
1 TTTAAAAATAAAAAAAATTAAAATAACAAA
99348138 TTTAAAAGATAAAAAAAATTAAAATTAATCAAA
1 TTTAAAA-ATAAAAAAAATTAAAA-TAA-CAAA
99348171 -TTAAAATATAAA
1 TTTAAAA-ATAAA
99348183 TGATAAATTC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
30 7 0.18
31 14 0.36
32 14 0.36
33 4 0.10
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (30 bp):
TTTAAAAATAAAAAAAATTAAAATAACAAA
Found at i:99352258 original size:22 final size:22
Alignment explanation
Indices: 99352233--99352277 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
99352223 GACTATGGGT
99352233 AATTCTAAATATTATGTAAAAA
1 AATTCTAAATATTATGTAAAAA
* ** *
99352255 AATTTTATTTATTATTTAAAAA
1 AATTCTAAATATTATGTAAAAA
99352277 A
1 A
99352278 TGTCATTTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
AATTCTAAATATTATGTAAAAA
Found at i:99352285 original size:21 final size:21
Alignment explanation
Indices: 99352242--99352294 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
99352232 TAATTCTAAA
* * *
99352242 TATTATGTAAAAAAATTTTATT
1 TATTAT-TTAAAAAATGTCATT
99352264 TATTATTTAAAAAATGTCATT
1 TATTATTTAAAAAATGTCATT
99352285 T-TCTATTTAA
1 TAT-TATTTAA
99352295 TAGAATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 20 0.74
22 6 0.22
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (21 bp):
TATTATTTAAAAAATGTCATT
Found at i:99353467 original size:19 final size:21
Alignment explanation
Indices: 99353445--99353492 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
99353435 TTAATGTCTA
*
99353445 TATTTTTTATT-AA-TTTAAT
1 TATTTTTTATTAAAGTTAAAT
*
99353464 TATTATTTTTTTAAAGTTAAAT
1 TATT-TTTTATTAAAGTTAAAT
99353486 TATTTTT
1 TATTTTT
99353493 ATTTAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 4 0.17
20 6 0.25
21 5 0.21
22 9 0.38
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TATTTTTTATTAAAGTTAAAT
Found at i:99353582 original size:24 final size:24
Alignment explanation
Indices: 99353550--99353613 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
99353540 TATTTATGTT
*
99353550 ATATGTAACAAT-AAAAATAAATAA
1 ATATATAACAATAAAAAAT-AATAA
99353574 ATATATAACAATAAAAAATAATAA
1 ATATATAACAATAAAAAATAATAA
*
99353598 A-A-ATAAAAATAAAAAA
1 ATATATAACAATAAAAAA
99353614 CGTATGAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
22 13 0.35
23 1 0.03
24 17 0.46
25 6 0.16
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.22
Consensus pattern (24 bp):
ATATATAACAATAAAAAATAATAA
Found at i:99357081 original size:13 final size:13
Alignment explanation
Indices: 99357063--99357089 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
99357053 GTAACTCCAT
99357063 CACCCCACTAAAC
1 CACCCCACTAAAC
99357076 CACCCCACTAAAC
1 CACCCCACTAAAC
99357089 C
1 C
99357090 GACCAGTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.56, G:0.00, T:0.07
Consensus pattern (13 bp):
CACCCCACTAAAC
Found at i:99357096 original size:42 final size:42
Alignment explanation
Indices: 99357044--99357128 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
99357034 ATTCAATTAG
99357044 AACCCACCAGTAACTCCATCACCCCACTAAACCACCCCACTA
1 AACCCACCAGTAACTCCATCACCCCACTAAACCACCCCACTA
* *
99357086 AACCGACCAGTAACTCCATCACCCCACTAAATCACCCCACTA
1 AACCCACCAGTAACTCCATCACCCCACTAAACCACCCCACTA
99357128 A
1 A
99357129 CTCCATTACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.36, C:0.47, G:0.04, T:0.13
Consensus pattern (42 bp):
AACCCACCAGTAACTCCATCACCCCACTAAACCACCCCACTA
Found at i:99357121 original size:13 final size:13
Alignment explanation
Indices: 99357103--99357128 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
99357093 CAGTAACTCC
99357103 ATCACCCCACTAA
1 ATCACCCCACTAA
99357116 ATCACCCCACTAA
1 ATCACCCCACTAA
99357129 CTCCATTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (13 bp):
ATCACCCCACTAA
Found at i:99357531 original size:21 final size:22
Alignment explanation
Indices: 99357475--99357536 Score: 81
Period size: 24 Copynumber: 2.7 Consensus size: 22
99357465 TTCCATTGAG
*
99357475 TTCTTTAAAATTCATGTTTTTATA
1 TTCTTT-AAATTCAT-TTATTATA
99357499 TTCTTTATAATTCATTTATTAT-
1 TTCTTTA-AATTCATTTATTATA
99357521 TTCTTTAAATTCATTT
1 TTCTTTAAATTCATTT
99357537 GGCATTCATT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 9 0.25
22 7 0.19
23 7 0.19
24 13 0.36
ACGTcount: A:0.27, C:0.10, G:0.02, T:0.61
Consensus pattern (22 bp):
TTCTTTAAATTCATTTATTATA
Found at i:99358600 original size:125 final size:125
Alignment explanation
Indices: 99358366--99358677 Score: 435
Period size: 125 Copynumber: 2.5 Consensus size: 125
99358356 CCCCCAACAT
* * * * * * * *
99358366 GAGGAAATCTTTCGTGTTTGGAAGTTTGAGAGATCGTGCACAATTGTGCTGGGTTTCGATTTTTC
1 GAGGCAATATTTCGTATTTGAAAGTTTGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTC
* *
99358431 ATTCGACAAAAATACAGAATATCCTTTTGAAATTTCATCTATGTTCTCTTAAATTAAAGC
66 ATTCGACAAAAATACAGAATATCCTTTTGAAATTTCATCCATGTTCTCTTAAATTAAAAC
* *
99358491 GAGGCAATATTTCGTATTTGAAAGTTCGATAAATCGTGCCCAATCGTGTTGGGTTTCGATTTTTC
1 GAGGCAATATTTCGTATTTGAAAGTTTGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTC
* * * * * *
99358556 ATTCGACTAAAATACTGAATATTCTTTTGGAATTTCATCCATGTTTTCTTAAATTAAAAT
66 ATTCGACAAAAATACAGAATATCCTTTTGAAATTTCATCCATGTTCTCTTAAATTAAAAC
* * *
99358616 GAGACAACATTTCGTATTTGAAAGTTTGATAAATCGTGCCAAATCGTGCTGGGTTTCGATTT
1 GAGGCAATATTTCGTATTTGAAAGTTTGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTT
99358678 ACCGTTTGGC
Statistics
Matches: 164, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
125 164 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (125 bp):
GAGGCAATATTTCGTATTTGAAAGTTTGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTC
ATTCGACAAAAATACAGAATATCCTTTTGAAATTTCATCCATGTTCTCTTAAATTAAAAC
Found at i:99358702 original size:125 final size:125
Alignment explanation
Indices: 99358375--99358718 Score: 388
Period size: 125 Copynumber: 2.7 Consensus size: 125
99358365 TGAGGAAATC
* * * * * * ** *
99358375 TTTCGTGTTTGGAAGTTTGAGAGATCGTG-CACAATTGTGCTGGGTTTCGATTTTTCATTCGACA
1 TTTCGTATTTGAAAGTTCGATAAATCGTGCCA-AATCGTGCTGGGTTTCGATTTACCATTCGACT
* * * *
99358439 AAAATAC-AGAATATCCTTTTGAAATTTCATCTATGTTCTCTTAAATTAAAGCGAGGCAATA
65 AAAATACTA-AATATCCTTTTGAAATTTCATCCATGTTCTCTTAAATTAAAACGAGACAACA
* * **
99358500 TTTCGTATTTGAAAGTTCGATAAATCGTGCCCAATCGTGTTGGGTTTCGATTTTTCATTCGACTA
1 TTTCGTATTTGAAAGTTCGATAAATCGTGCCAAATCGTGCTGGGTTTCGATTTACCATTCGACTA
* * * * *
99358565 AAATACTGAATATTCTTTTGGAATTTCATCCATGTTTTCTTAAATTAAAATGAGACAACA
66 AAATACTAAATATCCTTTTGAAATTTCATCCATGTTCTCTTAAATTAAAACGAGACAACA
* * * * *
99358625 TTTCGTATTTGAAAGTTTGATAAATCGTGCCAAATCGTGCTGGGTTTCGATTTACCGTTTGGC-C
1 TTTCGTATTTGAAAGTTCGATAAATCGTGCCAAATCGTGCTGGGTTTCGATTTACCATTCGACTA
99358689 AAATAGCTAAATATCCTTTTTGAAATTTCA
66 AAATA-CTAAATATCC-TTTTGAAATTTCA
99358719 AATGTATGAG
Statistics
Matches: 185, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
124 5 0.03
125 167 0.90
126 13 0.07
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (125 bp):
TTTCGTATTTGAAAGTTCGATAAATCGTGCCAAATCGTGCTGGGTTTCGATTTACCATTCGACTA
AAATACTAAATATCCTTTTGAAATTTCATCCATGTTCTCTTAAATTAAAACGAGACAACA
Found at i:99359346 original size:21 final size:22
Alignment explanation
Indices: 99359320--99359360 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
99359310 TTAGCTAATA
*
99359320 AAATTTTA-AACTTTTTTTCTC
1 AAATTTTATAACTTTATTTCTC
99359341 AAATTTTATAACTTTATTTC
1 AAATTTTATAACTTTATTTC
99359361 AATTTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (22 bp):
AAATTTTATAACTTTATTTCTC
Found at i:99359656 original size:13 final size:14
Alignment explanation
Indices: 99359633--99359661 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
99359623 TTGTGGCTTT
99359633 AAAAGGAAAAAAAG
1 AAAAGGAAAAAAAG
99359647 AAAA-GAAAAAAAG
1 AAAAGGAAAAAAAG
99359660 AA
1 AA
99359662 TCAAGTTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAGGAAAAAAAG
Found at i:99360931 original size:19 final size:17
Alignment explanation
Indices: 99360895--99360950 Score: 58
Period size: 19 Copynumber: 3.1 Consensus size: 17
99360885 ATATATGTTT
**
99360895 TTTTTATACTTTTTAAA
1 TTTTTATAAATTTTAAA
*
99360912 TTTATTATTAATTCTTAAA
1 TTT-TTATAAATT-TTAAA
99360931 TATTTTATAAATTTTAAA
1 T-TTTTATAAATTTTAAA
99360949 TT
1 TT
99360951 ATTTGTTGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
17 4 0.12
18 12 0.38
19 14 0.44
20 2 0.06
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTTATAAATTTTAAA
Found at i:99360953 original size:19 final size:19
Alignment explanation
Indices: 99360905--99360954 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
99360895 TTTTTATACT
* *
99360905 TTTTAAATT-TATTATTAA
1 TTTTAAATTATTTTATAAA
99360923 TTCTTAAA-TATTTTATAAA
1 TT-TTAAATTATTTTATAAA
99360942 TTTTAAATTATTT
1 TTTTAAATTATTT
99360955 GTTGACGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 8 0.30
19 19 0.70
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTAAATTATTTTATAAA
Found at i:99361130 original size:27 final size:29
Alignment explanation
Indices: 99361091--99361146 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
99361081 GCAAATGGTG
*
99361091 AAATTGTATTTTTA-C-TATCCTAAAATT
1 AAATTGTAATTTTAGCGTATCCTAAAATT
* *
99361118 AAATTTTAATTTTAGCGTCTCCTAAAATT
1 AAATTGTAATTTTAGCGTATCCTAAAATT
99361147 TTCTGCCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 12 0.50
28 1 0.04
29 11 0.46
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.46
Consensus pattern (29 bp):
AAATTGTAATTTTAGCGTATCCTAAAATT
Found at i:99362975 original size:182 final size:184
Alignment explanation
Indices: 99362665--99363023 Score: 634
Period size: 182 Copynumber: 2.0 Consensus size: 184
99362655 TAGGCAAGCC
99362665 GTGACAGTTTGGACGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAAAGGGCGTGGGTTC
1 GTGACAGTTTGGACGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAAAGGGCGTGGGTTC
*
99362730 AAATCCCACAGCTGTCAGTTTTTAATTATTAATTTTATTGGGCTTAAATCCAACTTATTAACGGG
66 AAATCCCACAGCTGTCAGTTTTTAATTATTAATTTTAGTGGGCTTAAATCCAACTTATTAACGGG
*
99362795 CTTGAGGCTTTCTGGT-TAATACAGAAGACC-GGAATTAGAGTCCAACCTTGCT
131 CTTGAGGCTTTCTGGTGTAATACAAAAGACCAGGAATTAGAGTCCAACCTTGCT
*
99362847 GTGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAAAGGGCGTGGGTTC
1 GTGACAGTTTGGACGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAAAGGGCGTGGGTTC
*
99362912 AAATCCCACAGCTGTCAG-TTTTAATTATTAATTTTAGTGGGCTTAAAATCCAACTTCTTAACGG
66 AAATCCCACAGCTGTCAGTTTTTAATTATTAATTTTAGTGGGCTT-AAATCCAACTTATTAACGG
* *
99362976 GCTTGAGGCTTTTTGGTGTAATGCAAAAGACCAGGAATTAGAGTCCAA
130 GCTTGAGGCTTTCTGGTGTAATACAAAAGACCAGGAATTAGAGTCCAA
99363024 TCTTACTTAT
Statistics
Matches: 168, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
181 25 0.15
182 116 0.69
183 12 0.07
184 15 0.09
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (184 bp):
GTGACAGTTTGGACGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAAAGGGCGTGGGTTC
AAATCCCACAGCTGTCAGTTTTTAATTATTAATTTTAGTGGGCTTAAATCCAACTTATTAACGGG
CTTGAGGCTTTCTGGTGTAATACAAAAGACCAGGAATTAGAGTCCAACCTTGCT
Found at i:99368877 original size:13 final size:13
Alignment explanation
Indices: 99368859--99368890 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
99368849 TTTCCAGCAA
99368859 TTATGAATTTATT
1 TTATGAATTTATT
99368872 TTATGAATTTATT
1 TTATGAATTTATT
*
99368885 TGATGA
1 TTATGA
99368891 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:99369098 original size:50 final size:50
Alignment explanation
Indices: 99368985--99369226 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
99368975 ATTTGGGTAA
* * *
99368985 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
99369041 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
99369091 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
99369141 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
99369191 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
99369227 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:99369174 original size:100 final size:103
Alignment explanation
Indices: 99368985--99369234 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
99368975 ATTTGGGTAA
99368985 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
99369050 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
99369091 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
99369153 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
99369191 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
99369235 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:99372464 original size:10 final size:10
Alignment explanation
Indices: 99372449--99372478 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
99372439 TCCATTAAAT
99372449 TAAATTTTAA
1 TAAATTTTAA
99372459 TAAA-TTTAA
1 TAAATTTTAA
99372468 TAAATTTTAA
1 TAAATTTTAA
99372478 T
1 T
99372479 TTAATCCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TAAATTTTAA
Found at i:99372980 original size:102 final size:102
Alignment explanation
Indices: 99372804--99373008 Score: 383
Period size: 102 Copynumber: 2.0 Consensus size: 102
99372794 CCGTCGTTAC
* *
99372804 GAAAATCCCCTTGTCTTCCTTTCCATCCTTCATTATTCTCGCCGCCCCTTACTCAGAAGACCCTC
1 GAAAATCCCCTGGTCTTCCTTTCCATCCTTCATTATTCTCGCCGCCCCTTACTCAGAAGACACTC
*
99372869 ACTTTCTCGACTGGGACTAGAGCCGTTTCGGGTTCCG
66 ACTTTCTCGACTGGGACTAGAGCCGTTTCGGGGTCCG
99372906 GAAAATCCCCTGGTCTTCCTTTCCATCCTTCATTATTCTCGCCGCCCCTTACTCAGAAGACACTC
1 GAAAATCCCCTGGTCTTCCTTTCCATCCTTCATTATTCTCGCCGCCCCTTACTCAGAAGACACTC
99372971 ACTTTCTCGACTGGGACTAGAGCCGTTTCGGGGTCCG
66 ACTTTCTCGACTGGGACTAGAGCCGTTTCGGGGTCCG
99373008 G
1 G
99373009 GAAGTTCTGT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.17, C:0.35, G:0.18, T:0.30
Consensus pattern (102 bp):
GAAAATCCCCTGGTCTTCCTTTCCATCCTTCATTATTCTCGCCGCCCCTTACTCAGAAGACACTC
ACTTTCTCGACTGGGACTAGAGCCGTTTCGGGGTCCG
Found at i:99375134 original size:16 final size:16
Alignment explanation
Indices: 99375113--99375144 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
99375103 CTTACTTTAG
99375113 GTAAAATAAAAAACTA
1 GTAAAATAAAAAACTA
99375129 GTAAAATAAAAAACTA
1 GTAAAATAAAAAACTA
99375145 ACATTTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (16 bp):
GTAAAATAAAAAACTA
Found at i:99379486 original size:14 final size:13
Alignment explanation
Indices: 99379470--99379494 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99379460 TGAGAAGTGT
99379470 TTTTAAAAAAATA
1 TTTTAAAAAAATA
99379483 TTTTAAAAAAAT
1 TTTTAAAAAAAT
99379495 GATATCGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TTTTAAAAAAATA
Found at i:99380697 original size:22 final size:23
Alignment explanation
Indices: 99380655--99380698 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
99380645 TAAATAGTAC
*
99380655 AATAATTTAAATAAACTTTTTAA
1 AATAATTTAAATAAACATTTTAA
*
99380678 AATAATTT-AATAATCATTTTA
1 AATAATTTAAATAAACATTTTA
99380699 TAATTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (23 bp):
AATAATTTAAATAAACATTTTAA
Found at i:99405822 original size:19 final size:16
Alignment explanation
Indices: 99405780--99405815 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
99405770 TCAACCGTGC
99405780 TATATTATCATGTGGA
1 TATATTATCATGTGGA
*
99405796 TATATTATCATGTGAA
1 TATATTATCATGTGGA
99405812 TATA
1 TATA
99405816 ATATTATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (16 bp):
TATATTATCATGTGGA
Found at i:99408770 original size:29 final size:31
Alignment explanation
Indices: 99408726--99408783 Score: 93
Period size: 29 Copynumber: 1.9 Consensus size: 31
99408716 ACCTGATTTT
*
99408726 TAAAATATGAAAAGTAAATAAACTAAATTAC
1 TAAAATATGAAAAGTAAAGAAACTAAATTAC
99408757 TAAAA-AT-AAAAGTAAAGAAACTAAATT
1 TAAAATATGAAAAGTAAAGAAACTAAATT
99408784 TTAAATTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 19 0.73
30 2 0.08
31 5 0.19
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.24
Consensus pattern (31 bp):
TAAAATATGAAAAGTAAAGAAACTAAATTAC
Found at i:99409358 original size:27 final size:25
Alignment explanation
Indices: 99409295--99409369 Score: 87
Period size: 25 Copynumber: 2.9 Consensus size: 25
99409285 ATACCACTAT
* *
99409295 GTTTTAACTTTATCTTGAATTTTGTA
1 GTTTTAA-TTTTTATTGAATTTTGTA
* *
99409321 GTTTTAATTTTTATTGATTTTTGTC
1 GTTTTAATTTTTATTGAATTTTGTA
99409346 GTTTTAATTTTTTTATTGAATTTT
1 GTTTTAA--TTTTTATTGAATTTT
99409370 ATCACTAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 21 0.50
26 7 0.17
27 14 0.33
ACGTcount: A:0.20, C:0.04, G:0.11, T:0.65
Consensus pattern (25 bp):
GTTTTAATTTTTATTGAATTTTGTA
Found at i:99410153 original size:20 final size:20
Alignment explanation
Indices: 99410124--99410162 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
99410114 AGTTTATGGG
*
99410124 ATAAATTAATTAATTTAATA
1 ATAAAATAATTAATTTAATA
99410144 ATAAAATAATTAATTTAAT
1 ATAAAATAATTAATTTAAT
99410163 TCGATCTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
ATAAAATAATTAATTTAATA
Found at i:99414113 original size:16 final size:17
Alignment explanation
Indices: 99414076--99414113 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
99414066 TATTATTTAA
99414076 AAAATTATAAAATTTTT
1 AAAATTATAAAATTTTT
* *
99414093 GAAATTAT-AATTTTTT
1 AAAATTATAAAATTTTT
99414109 AAAAT
1 AAAAT
99414114 AATTAGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
AAAATTATAAAATTTTT
Found at i:99419238 original size:3 final size:3
Alignment explanation
Indices: 99419230--99419256 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
99419220 TAAGGTGGAG
99419230 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
99419257 CCGCACAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:99427335 original size:16 final size:17
Alignment explanation
Indices: 99427309--99427344 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
99427299 AGTCTGTCAG
99427309 TATTATTTTAAAAAAAA
1 TATTATTTTAAAAAAAA
*
99427326 TATT-TTTTAAAAAATA
1 TATTATTTTAAAAAAAA
99427342 TAT
1 TAT
99427345 AATATATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTATTTTAAAAAAAA
Found at i:99431843 original size:17 final size:15
Alignment explanation
Indices: 99431823--99431866 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
99431813 AAATTTATTG
99431823 AAATAATTGATTTAAGA
1 AAATAATTGATTT-A-A
99431840 AAATATATTTGATTTAA
1 AAATA-A-TTGATTTAA
99431857 AAATAATTGA
1 AAATAATTGA
99431867 AATGCATTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 4 0.16
16 1 0.04
17 11 0.44
18 2 0.08
19 7 0.28
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (15 bp):
AAATAATTGATTTAA
Found at i:99432174 original size:14 final size:15
Alignment explanation
Indices: 99432142--99432174 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
99432132 AGTAATATTA
99432142 TAATAAACTTAAATT
1 TAATAAACTTAAATT
*
99432157 TAATAAAC-TAATTT
1 TAATAAACTTAAATT
99432171 TAAT
1 TAAT
99432175 GTTATCCGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (15 bp):
TAATAAACTTAAATT
Found at i:99435599 original size:6 final size:6
Alignment explanation
Indices: 99435588--99435613 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
99435578 ATAAATAAAT
99435588 AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
99435614 CTTTACAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:99438194 original size:32 final size:31
Alignment explanation
Indices: 99438149--99438209 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
99438139 GGACTGATAA
99438149 AAAAAATTTTAATAACTCAATTACTTAAAAT
1 AAAAAATTTTAATAACTCAATTACTTAAAAT
* **
99438180 AAAAATTTTCTAATAGTTCAATTACTTAAA
1 AAAAAATTT-TAATAACTCAATTACTTAAA
99438210 TGAAAACTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 8 0.31
32 18 0.69
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.38
Consensus pattern (31 bp):
AAAAAATTTTAATAACTCAATTACTTAAAAT
Found at i:99441929 original size:20 final size:21
Alignment explanation
Indices: 99441893--99441934 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
99441883 TAAAAATATT
* *
99441893 TTTTATAATATTTTATTTTAA
1 TTTTATAATAATTTATTCTAA
99441914 TTTTATAA-AATTTATTCTAA
1 TTTTATAATAATTTATTCTAA
99441934 T
1 T
99441935 ATCAAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTATAATAATTTATTCTAA
Found at i:99457980 original size:32 final size:32
Alignment explanation
Indices: 99457937--99458001 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
99457927 TGGTGTTGAG
99457937 AATGTAAATATAAATGTATAGCTATATATACT
1 AATGTAAATATAAATGTATAGCTATATATACT
*
99457969 AATGTATATATAAATGTATAGCTATATATACT
1 AATGTAAATATAAATGTATAGCTATATATACT
99458001 A
1 A
99458002 TATTGTTGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.38
Consensus pattern (32 bp):
AATGTAAATATAAATGTATAGCTATATATACT
Found at i:99465356 original size:35 final size:35
Alignment explanation
Indices: 99465310--99465379 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
99465300 TAAAACCTTT
99465310 TATTTTTGACTGCACAAAAGTGAAATGTCAACCAA
1 TATTTTTGACTGCACAAAAGTGAAATGTCAACCAA
99465345 TATTTTTGACTGCACAAAAGTGAAATGTCAACCAA
1 TATTTTTGACTGCACAAAAGTGAAATGTCAACCAA
99465380 AGATATATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (35 bp):
TATTTTTGACTGCACAAAAGTGAAATGTCAACCAA
Found at i:99472208 original size:30 final size:30
Alignment explanation
Indices: 99472172--99472234 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
99472162 GCACGATAAA
* *
99472172 CAACATTAGACAAATATCATAAGACCATTT
1 CAACATTAGACAAATATCATAAAACCAGTT
99472202 CAACATTAGACAAATATCATAAAACCAGTT
1 CAACATTAGACAAATATCATAAAACCAGTT
99472232 CAA
1 CAA
99472235 ACTTAATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.49, C:0.21, G:0.06, T:0.24
Consensus pattern (30 bp):
CAACATTAGACAAATATCATAAAACCAGTT
Found at i:99491624 original size:16 final size:17
Alignment explanation
Indices: 99491603--99491637 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
99491593 TTTTCTAACT
99491603 TTTTATATT-ATTAATA
1 TTTTATATTCATTAATA
99491619 TTTTATATTCGATTAATA
1 TTTTATATTC-ATTAATA
99491637 T
1 T
99491638 AGACTATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
18 8 0.47
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (17 bp):
TTTTATATTCATTAATA
Found at i:99491756 original size:22 final size:21
Alignment explanation
Indices: 99491706--99491758 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
99491696 AAACGTTAAA
99491706 TATATTAATATATACAATATTT
1 TATATTAATATATACAATA-TT
* *
99491728 TAAATTAATATAATAGAGATA-T
1 TATATTAATAT-ATACA-ATATT
99491750 TATATTAAT
1 TATATTAAT
99491759 TAAAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 19 0.73
23 4 0.15
24 3 0.12
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (21 bp):
TATATTAATATATACAATATT
Found at i:99491870 original size:19 final size:21
Alignment explanation
Indices: 99491819--99491859 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
99491809 TTAAATTATT
99491819 AAAATATT--AATTATATAAA
1 AAAATATTAAAATTATATAAA
99491838 AAAATATTAAAATTATATAAA
1 AAAATATTAAAATTATATAAA
99491859 A
1 A
99491860 CAACTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 8 0.40
21 12 0.60
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAATATTAAAATTATATAAA
Found at i:99495699 original size:38 final size:39
Alignment explanation
Indices: 99495646--99495756 Score: 163
Period size: 39 Copynumber: 2.9 Consensus size: 39
99495636 TGATTCTAAC
* *
99495646 CCCCATGCTACTTTGTTTTATTATTAATCAAAAGC-A-TT
1 CCCCATGCTATTTTGTTTTATTATTAATTAAAA-CTATTT
*
99495684 CCCCATGCTATTTTGTTTTATTGTTAATTAAAACTATTT
1 CCCCATGCTATTTTGTTTTATTATTAATTAAAACTATTT
*
99495723 CCCCATACTATTTTGTTTTATTATTAATTAAAAC
1 CCCCATGCTATTTTGTTTTATTATTAATTAAAAC
99495757 CATACTTTAT
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.02
38 31 0.47
39 34 0.52
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (39 bp):
CCCCATGCTATTTTGTTTTATTATTAATTAAAACTATTT
Found at i:99496292 original size:12 final size:11
Alignment explanation
Indices: 99496270--99496299 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
99496260 TAGAAAGAAT
99496270 ATAAAAAATAA
1 ATAAAAAATAA
99496281 ATAAATAAATAA
1 ATAAA-AAATAA
99496293 ATAAAAA
1 ATAAAAA
99496300 TAATGACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (11 bp):
ATAAAAAATAA
Found at i:99504727 original size:17 final size:17
Alignment explanation
Indices: 99504701--99504734 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
99504691 TTAGGGAATT
99504701 TACAAGTATAAATATAA
1 TACAAGTATAAATATAA
*
99504718 TACAATTATAAATATAA
1 TACAAGTATAAATATAA
99504735 ATATAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (17 bp):
TACAAGTATAAATATAA
Found at i:99504733 original size:6 final size:6
Alignment explanation
Indices: 99504707--99504755 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
99504697 AATTTACAAG
* * * *
99504707 TATAAA TAT-AA TACAAT TATAAA TATAAA TATAAA TATATA TATGAA
1 TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA
99504754 TA
1 TA
99504756 ATAATAAAGT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
5 4 0.11
6 31 0.89
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (6 bp):
TATAAA
Found at i:99504745 original size:18 final size:17
Alignment explanation
Indices: 99504701--99504755 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
99504691 TTAGGGAATT
*
99504701 TACAAGTATAAATATAA
1 TACAAATATAAATATAA
*
99504718 TACAATTATAAATATAAA
1 TACAAATATAAATAT-AA
* *
99504736 TATAAATATATATATGAA
1 TACAAATATAAATAT-AA
99504754 TA
1 TA
99504756 ATAATAAAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 14 0.44
18 18 0.56
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (17 bp):
TACAAATATAAATATAA
Found at i:99518978 original size:31 final size:31
Alignment explanation
Indices: 99518943--99519012 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
99518933 CTTGTCACTT
* * *
99518943 GTAGCCGAAGCTATCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
* * *
99518974 GTAGCCGGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
99519005 GTAGCCGA
1 GTAGCCGA
99519013 TGATCAGGTA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTAATCAA
Found at i:99519034 original size:46 final size:46
Alignment explanation
Indices: 99518967--99519058 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
99518957 CACTATTCAC
* *
99518967 TGATCAGGTAGCCGGAGCTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * *
99519013 TGATCAGGTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
99519059 AGCTACCACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:99519051 original size:31 final size:31
Alignment explanation
Indices: 99519013--99519071 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
99519003 AAGTAGCCGA
99519013 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
99519044 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
99519072 TTACTTGCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:99519151 original size:50 final size:50
Alignment explanation
Indices: 99519051--99519278 Score: 330
Period size: 50 Copynumber: 4.5 Consensus size: 50
99519041 CATTGATCAG
* * * *
99519051 GTAGCCGAAGCTACCACTTTTTTACTTGCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCAC-TTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* * * *
99519103 GTAGCTGAAGCTATCACTTATCAGTTTCATTTATCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
99519153 ATAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* * *
99519203 GTAGCTGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
99519253 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
99519279 GTTGCCATGG
Statistics
Matches: 158, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
50 137 0.87
51 6 0.04
52 15 0.09
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:99522975 original size:16 final size:17
Alignment explanation
Indices: 99522944--99522978 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
99522934 TTTGACATAT
99522944 AAATATTATATATAAAG
1 AAATATTATATATAAAG
*
99522961 AAATA-TATATCTAAAG
1 AAATATTATATATAAAG
99522977 AA
1 AA
99522979 TTGGTTAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (17 bp):
AAATATTATATATAAAG
Found at i:99524877 original size:26 final size:27
Alignment explanation
Indices: 99524828--99524881 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
99524818 ATTGAGGTGG
*
99524828 ACTGGCTCTTTTTAAGAGAAGTTTTCA
1 ACTGGCTCTTTTCAAGAGAAGTTTTCA
99524855 ACTGGCTC-TTTCAAGAGAAGTTTTCA
1 ACTGGCTCTTTTCAAGAGAAGTTTTCA
99524881 A
1 A
99524882 ACAACTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (27 bp):
ACTGGCTCTTTTCAAGAGAAGTTTTCA
Found at i:99524899 original size:31 final size:31
Alignment explanation
Indices: 99524864--99524928 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
99524854 AACTGGCTCT
*
99524864 TTCAAGAGAAGTTTTCAAACAACTAAATGTA
1 TTCAAGAGAAGTTTTCAAACAACCAAATGTA
99524895 TTCAAGAGAAGTTTTCAAACAACCAAATGTA
1 TTCAAGAGAAGTTTTCAAACAACCAAATGTA
99524926 TTC
1 TTC
99524929 CGTGTTGAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.43, C:0.15, G:0.12, T:0.29
Consensus pattern (31 bp):
TTCAAGAGAAGTTTTCAAACAACCAAATGTA
Found at i:99536045 original size:20 final size:21
Alignment explanation
Indices: 99536022--99536087 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 21
99536012 TAAATTTAAG
99536022 GTTTAAGGTTTGA-GTTTAGA
1 GTTTAAGGTTTGAGGTTTAGA
* * * *
99536042 GTTTCATGTTT-AGGTTCAAA
1 GTTTAAGGTTTGAGGTTTAGA
*
99536062 GTTTAATGGTTTGAGGTTTAGT
1 GTTTAA-GGTTTGAGGTTTAGA
99536084 GTTT
1 GTTT
99536088 GGGTTTAAGG
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
19 1 0.03
20 19 0.56
21 4 0.12
22 10 0.29
ACGTcount: A:0.21, C:0.03, G:0.27, T:0.48
Consensus pattern (21 bp):
GTTTAAGGTTTGAGGTTTAGA
Found at i:99539365 original size:34 final size:34
Alignment explanation
Indices: 99539322--99539391 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
99539312 ATCCATTTTG
99539322 GAGTTGTTGGTGCTTATATAGATAGATTATAGAA
1 GAGTTGTTGGTGCTTATATAGATAGATTATAGAA
99539356 GAGTTGTTGGTGCTTATATAGATAGATTATAGAA
1 GAGTTGTTGGTGCTTATATAGATAGATTATAGAA
99539390 GA
1 GA
99539392 AAAATTCGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.37
Consensus pattern (34 bp):
GAGTTGTTGGTGCTTATATAGATAGATTATAGAA
Found at i:99541574 original size:18 final size:17
Alignment explanation
Indices: 99541543--99541576 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
99541533 TTAATTATTA
99541543 ATATTTATTATAAATAT
1 ATATTTATTATAAATAT
*
99541560 ATATATTATTTTAAATA
1 ATAT-TTATTATAAATA
99541577 GTTATGAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATTTATTATAAATAT
Found at i:99548546 original size:7 final size:6
Alignment explanation
Indices: 99548505--99548545 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
99548495 ATAATTTAAT
*
99548505 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
99548546 ACTGGTTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:99548546 original size:20 final size:20
Alignment explanation
Indices: 99548508--99548548 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
99548498 ATTTAATAAA
**
99548508 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
99548528 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
99548548 T
1 T
99548549 GGTTAATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:99552284 original size:3 final size:3
Alignment explanation
Indices: 99552276--99552302 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
99552266 AGGGTACAAT
99552276 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
99552303 AACTATTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:99552299 original size:126 final size:120
Alignment explanation
Indices: 99552162--99552636 Score: 647
Period size: 117 Copynumber: 3.9 Consensus size: 120
99552152 AGGGTTCAAC
* **
99552162 GAAGAAGAAGAAGAAAACTATTGGTGATGAACAGAGTATTGAAGGGTTAAGTGGTAGCAAGGTTG
1 GAAGAAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTAATAGCAAGGTTG
*
99552227 AAATGGAAGATCCCCTTAAGCGTAAACGTGGTCGGCCAAAGGGTACAATGAAGAAGAAGAA
66 AAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTACAAT-----A-AAGAA
** * *
99552288 GAAGAAGAAGAAGAAAACTATTGGTGGTGAACATTGTATTGTAGGGTTAAGTAATAGCAGGGTTG
1 GAAGAAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTAATAGCAAGGTTG
* * *
99552353 AAATGGAAAATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTTC-A-ACA-AA
66 AAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTACAATAAAGAA
* *
99552405 GAAGAAGAAGAAGAAAACTATTGGTGGTGAACAAAGTATTGAAGGGTTAAGTGATAGCAAGGTTG
1 GAAGAAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTAATAGCAAGGTTG
99552470 AAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTACAAT---GAA
66 AAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTACAATAAAGAA
* * * *
99552522 CAAGAAGAAGAAGAAAACTATTGGTGCTGAGCAGAGTATTGAAGGGTTTAGTAATAGCAAGGTTG
1 GAAGAAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTAATAGCAAGGTTG
99552587 AAATGGAAGATCCCCTTAAAGCCAAGCCTAAACGTGGTCGGCCAAAGGGT
66 AAATGGAAGATCCCCTT------AAGCCTAAACGTGGTCGGCCAAAGGGT
99552637 TCAAAGAATA
Statistics
Matches: 316, Mismatches: 24, Indels: 21
0.88 0.07 0.06
Matches are distributed among these distances:
117 184 0.58
118 2 0.01
119 1 0.00
123 27 0.09
125 1 0.00
126 101 0.32
ACGTcount: A:0.39, C:0.12, G:0.29, T:0.20
Consensus pattern (120 bp):
GAAGAAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTAATAGCAAGGTTG
AAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTACAATAAAGAA
Found at i:99552409 original size:234 final size:230
Alignment explanation
Indices: 99551928--99552640 Score: 973
Period size: 234 Copynumber: 3.0 Consensus size: 230
99551918 CGAAGAAAAA
* * * * *
99551928 CAACAACAAGAAGAAAACTACTGGTGGCGAACAGATTATTGAAGGGTTAAGTGATAACAAGGTTG
1 CAACAAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTGATAGCAAGGTTG
* * *
99551993 AAATGGAAGATCCCTTTAAGCCTAAACGTGGTCGGCCAAAGGGTGCAATGAACAAGAAGAAGAAG
66 AAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTACAATGAAGAAGAAGAAGAAG
* * * *
99552058 AAGAAAACTATTGATGGTGAACAGAGCATTGAAGTGTTAAGTGATAGCAGGGTTGAAATGGAAGA
131 AAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTAATAGCAGGGTTGAAATGGAAGA
99552123 TCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTT
196 TCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTT
* *
99552158 CAACGAAGAAGAAGAAGAAAACTATTGGTGATGAACAGAGTATTGAAGGGTTAAGTGGTAGCAAG
1 CAAC----AAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTGATAGCAAG
*
99552223 GTTGAAATGGAAGATCCCCTTAAGCGTAAACGTGGTCGGCCAAAGGGTACAATGAAGAAGAAGAA
62 GTTGAAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTACAAT------GAAGAA
** *
99552288 GAAGAAGAAGAAGAAAACTATTGGTGGTGAACATTGTATTGTAGGGTTAAGTAATAGCAGGGTTG
121 GAAGAAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTAATAGCAGGGTTG
*
99552353 AAATGGAAAATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTT
186 AAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTT
*
99552398 CAACAAAGAAGAAGAAGAAGAAAACTATTGGTGGTGAACAAAGTATTGAAGGGTTAAGTGATAGC
1 CAAC-------AAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTGATAGC
*
99552463 AAGGTTGAAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTACAAT---GAACAA
59 AAGGTTGAAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTACAATGAAGAAGAA
* * * *
99552525 GAAGAAGAAGAAAACTATTGGTGCTGAGCAGAGTATTGAAGGGTTTAGTAATAGCAAGGTTGAAA
124 GAAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTAATAGCAGGGTTGAAA
99552590 TGGAAGATCCCCTTAAAGCCAAGCCTAAACGTGGTCGGCCAAAGGGTT
189 TGGAAGATCCCCTT------AAGCCTAAACGTGGTCGGCCAAAGGGTT
99552638 CAA
1 CAA
99552641 AGAATAAACA
Statistics
Matches: 432, Mismatches: 32, Indels: 28
0.88 0.07 0.06
Matches are distributed among these distances:
230 4 0.01
234 176 0.41
240 142 0.33
243 110 0.25
ACGTcount: A:0.38, C:0.13, G:0.28, T:0.20
Consensus pattern (230 bp):
CAACAAGAAGAAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTGATAGCAAGGTTG
AAATGGAAGATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTACAATGAAGAAGAAGAAGAAG
AAGAAAACTATTGGTGGTGAACAGAGTATTGAAGGGTTAAGTAATAGCAGGGTTGAAATGGAAGA
TCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTT
Found at i:99552593 original size:360 final size:363
Alignment explanation
Indices: 99551935--99552636 Score: 1085
Period size: 360 Copynumber: 1.9 Consensus size: 363
99551925 AAACAACAAC
*
99551935 AAGAAGAAAACTACTGGTGGCGAACAGATTATTGAAGGGTTAAGTGATAACAAGGTTGAAATGGA
1 AAGAAGAAAACTACTGGTGGCGAACAGATTATTGAAGGGTTAAGTAATAACAAGGTTGAAATGGA
* *
99552000 AGATCCCTTTAAGCCTAAACGTGGTCGGCCAAAGGGTGCAATGAACAAGAAGAAGAAGAAGAAAA
66 AAATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTGCAA-GAACAAGAAGAAGAAGAAGAAAA
* * *
99552065 CTATTGATGGTGAACAGAGCATTGAAGTGTTAAGTGATAGCAGGGTTGAAATGGAAGATCCCCTT
130 CTATTGATGGTGAACAAAGCATTGAAGGGTTAAGTGATAGCAAGGTTGAAATGGAAGATCCCCTT
*
99552130 AAGCCTAAACGTGGTCGGCCAAAGGGTTCAACGAAGAAGAAGAAGAAAACTATTGGTGATGAACA
195 AAGCCTAAACGTGGTCGGCCAAAGGGTACAACGAAGAAGAAGAAGAAAACTATTGGTGATGAACA
**
99552195 GAGTATTGAAGGGTTAAGTGGTAGCAAGGTTGAAATGGAAGATCCCCTT-AAG-C-G-TAAACGT
260 GAGTATTGAAGGGTTAAGTAATAGCAAGGTTGAAATGGAAGATCCCCTTAAAGCCAGCTAAACGT
99552256 GGTCGGCCAAAGGGTACAATGAAGAAGAAGAAGAAGAAG
325 GGTCGGCCAAAGGGTACAATGAAGAAGAAGAAGAAGAAG
* * * * * *
99552295 AAGAAGAAAACTATTGGTGGTGAACA-TTGTATTGTAGGGTTAAGTAATAGCAGGGTTGAAATGG
1 AAGAAGAAAACTACTGGTGGCGAACAGAT-TATTGAAGGGTTAAGTAATAACAAGGTTGAAATGG
* *
99552359 AAAATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTTCAA-CA-AAGAAGAAGAAGAAGAAAA
65 AAAATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTGCAAGAACAAGAAGAAGAAGAAGAAAA
* *
99552422 CTATTGGTGGTGAACAAAGTATTGAAGGGTTAAGTGATAGCAAGGTTGAAATGGAAGATCCCCTT
130 CTATTGATGGTGAACAAAGCATTGAAGGGTTAAGTGATAGCAAGGTTGAAATGGAAGATCCCCTT
* *
99552487 AAGCCTAAACGTGGTCGGCCAAAGGGTACAATGAACAAGAAGAAGAAGAAAACTATTGGTGCTGA
195 AAGCCTAAACGTGGTCGGCCAAAGGGTACAACG---AAGAAGAAGAAGAAAACTATTGGTGATGA
* *
99552552 GCAGAGTATTGAAGGGTTTAGTAATAGCAAGGTTGAAATGGAAGATCCCCTTAAAGCCAAGCCTA
257 ACAGAGTATTGAAGGGTTAAGTAATAGCAAGGTTGAAATGGAAGATCCCCTTAAAGCC-AG-CTA
99552617 AACGTGGTCGGCCAAAGGGT
320 AACGTGGTCGGCCAAAGGGT
99552637 TCAAAGAATA
Statistics
Matches: 309, Mismatches: 23, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
357 110 0.36
358 1 0.00
359 1 0.00
360 170 0.55
361 3 0.01
362 1 0.00
364 1 0.00
366 22 0.07
ACGTcount: A:0.38, C:0.13, G:0.29, T:0.20
Consensus pattern (363 bp):
AAGAAGAAAACTACTGGTGGCGAACAGATTATTGAAGGGTTAAGTAATAACAAGGTTGAAATGGA
AAATCCCCTTAAGCCTAAACGTGGTCGGCCAAAGGGTGCAAGAACAAGAAGAAGAAGAAGAAAAC
TATTGATGGTGAACAAAGCATTGAAGGGTTAAGTGATAGCAAGGTTGAAATGGAAGATCCCCTTA
AGCCTAAACGTGGTCGGCCAAAGGGTACAACGAAGAAGAAGAAGAAAACTATTGGTGATGAACAG
AGTATTGAAGGGTTAAGTAATAGCAAGGTTGAAATGGAAGATCCCCTTAAAGCCAGCTAAACGTG
GTCGGCCAAAGGGTACAATGAAGAAGAAGAAGAAGAAG
Found at i:99556336 original size:15 final size:15
Alignment explanation
Indices: 99556316--99556344 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
99556306 TCTTTCCTCG
99556316 TTTTTTTT-TCTTTT
1 TTTTTTTTGTCTTTT
99556330 TTTTTTTTGTCTTTT
1 TTTTTTTTGTCTTTT
99556345 GTTCTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.90
Consensus pattern (15 bp):
TTTTTTTTGTCTTTT
Found at i:99560581 original size:36 final size:36
Alignment explanation
Indices: 99560534--99560605 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
99560524 TCTTTTCTGT
99560534 TAAAAATTTCATCCATTTATATCATAAGAAATTGGC
1 TAAAAATTTCATCCATTTATATCATAAGAAATTGGC
99560570 TAAAAATTTCATCCATTTATATCATAAGAAATTGGC
1 TAAAAATTTCATCCATTTATATCATAAGAAATTGGC
99560606 GTGACTAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (36 bp):
TAAAAATTTCATCCATTTATATCATAAGAAATTGGC
Found at i:99571360 original size:14 final size:14
Alignment explanation
Indices: 99571341--99571367 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
99571331 TGGATTATAT
99571341 AAAAGAAAAAAAAG
1 AAAAGAAAAAAAAG
99571355 AAAAGAAAAAAAA
1 AAAAGAAAAAAAA
99571368 AAGTTGGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAAG
Found at i:99581686 original size:28 final size:27
Alignment explanation
Indices: 99581630--99581698 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 27
99581620 AACCTAAATT
99581630 TTAAATTTTAAAAAAAGTAAAATAAAAA
1 TTAAATTTTAAAAAAAG-AAAATAAAAA
*
99581658 -TAAATTCTTAAAAATAA-AAATATAGAAA
1 TTAAATT-TTAAAAA-AAGAAA-ATAAAAA
99581686 TTAAATTTTAAAA
1 TTAAATTTTAAAA
99581699 TTTTGATGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
27 9 0.25
28 19 0.53
29 8 0.22
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (27 bp):
TTAAATTTTAAAAAAAGAAAATAAAAA
Found at i:99584329 original size:231 final size:231
Alignment explanation
Indices: 99583926--99584342 Score: 762
Period size: 231 Copynumber: 1.8 Consensus size: 231
99583916 TGGAACAACA
99583926 ACATGTTTCAATTTTTAATTGGGCTGTTTTCTGGATTGAAAAAATTCGGAGTTTTAAAATTTTTG
1 ACATGTTTCAATTTTTAATTGGGCTGTTTTCTGGATTGAAAAAATTCGGAGTTTTAAAATTTTTG
* * *
99583991 AATTATTATGGATTTTAAATGTTTTGGGTTTAGTTTGTTTGTGTTTGAATATTGTGTTTTTTTAA
66 AATTATTATGGATTTTAAATATTTTGGGTTTAGTTTATTTGTGTTTGAATATCGTGTTTTTTTAA
** *
99584056 ATAATTAAAATTTAGATTTGAATTGTTGATTTTTTATGATTAATTACGATAAAATTTGGGTTTTT
131 ATAATTAAAATTTAGATTTGAATTGTCAACTTTTTATGATTAATTACGATAAAATTTGGGTTTTT
99584121 AACATTATCTACACGTTTCATACAAATTCCCATGTG
196 AACATTATCTACACGTTTCATACAAATTCCCATGTG
*
99584157 ACATGTTTCAATTTTTAATTGGGCTGTTTTCTGGATTGAGAAAATTCGGAGTTTTAAAATTTTTG
1 ACATGTTTCAATTTTTAATTGGGCTGTTTTCTGGATTGAAAAAATTCGGAGTTTTAAAATTTTTG
*
99584222 AATTATTATGGGTTTTAAATATTTTGGGTTTAGTTTATTTGTGTTTGAATATCGTGTTTTTTTAA
66 AATTATTATGGATTTTAAATATTTTGGGTTTAGTTTATTTGTGTTTGAATATCGTGTTTTTTTAA
99584287 ATAATTAAAATTTAGATTTGAATTGTCAACTTTTTATGATTAATTACGATAAAATT
131 ATAATTAAAATTTAGATTTGAATTGTCAACTTTTTATGATTAATTACGATAAAATT
99584343 AAGTTTGAAA
Statistics
Matches: 178, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
231 178 1.00
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.49
Consensus pattern (231 bp):
ACATGTTTCAATTTTTAATTGGGCTGTTTTCTGGATTGAAAAAATTCGGAGTTTTAAAATTTTTG
AATTATTATGGATTTTAAATATTTTGGGTTTAGTTTATTTGTGTTTGAATATCGTGTTTTTTTAA
ATAATTAAAATTTAGATTTGAATTGTCAACTTTTTATGATTAATTACGATAAAATTTGGGTTTTT
AACATTATCTACACGTTTCATACAAATTCCCATGTG
Found at i:99587084 original size:60 final size:59
Alignment explanation
Indices: 99587018--99587160 Score: 173
Period size: 58 Copynumber: 2.4 Consensus size: 59
99587008 AAAATTCAAG
* * *
99587018 ATAGTTGAGTGACTAAAAAAGACAAAATTAAATTGTTGAGTG-ATCATTTTGTAATTTTTC
1 ATAGTTGAGTGACTAAAAAAGA-AAAATTAAATAGTTGAGCGAACCATTTTGTAA-TTTTC
* * * *
99587078 ATAGTTGAGTGAATAAAAAA-AGAAATTTACTAGTTGAGCGAACCATTTTGTAATTTTC
1 ATAGTTGAGTGACTAAAAAAGAAAAATTAAATAGTTGAGCGAACCATTTTGTAATTTTC
* *
99587136 ATAGTTGAGTGACCAAAGAAGAAAA
1 ATAGTTGAGTGACTAAAAAAGAAAA
99587161 GAAAAGACTA
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
58 36 0.51
59 15 0.21
60 19 0.27
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (59 bp):
ATAGTTGAGTGACTAAAAAAGAAAAATTAAATAGTTGAGCGAACCATTTTGTAATTTTC
Found at i:99589461 original size:12 final size:12
Alignment explanation
Indices: 99589444--99589468 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99589434 GTTTGTCAAT
99589444 CCAACTGATTTA
1 CCAACTGATTTA
99589456 CCAACTGATTTA
1 CCAACTGATTTA
99589468 C
1 C
99589469 TCGGTCCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (12 bp):
CCAACTGATTTA
Found at i:99592636 original size:19 final size:20
Alignment explanation
Indices: 99592599--99592638 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
99592589 TAACATAATG
*
99592599 ATATATAATAGATAATTATT
1 ATATATAATACATAATTATT
*
99592619 ATATA-AATACATATTTATT
1 ATATATAATACATAATTATT
99592638 A
1 A
99592639 GTTGATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (20 bp):
ATATATAATACATAATTATT
Found at i:99602219 original size:22 final size:22
Alignment explanation
Indices: 99602194--99602236 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
99602184 ATAGCAATAT
*
99602194 AACAGCGAAATAACAACAAAAC
1 AACAACGAAATAACAACAAAAC
* *
99602216 AACAACGAAATTACAGCAAAA
1 AACAACGAAATAACAACAAAA
99602237 AATAAAGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.63, C:0.21, G:0.09, T:0.07
Consensus pattern (22 bp):
AACAACGAAATAACAACAAAAC
Done.