Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 306 of 311
Found at i:100014597 original size:88 final size:88
Alignment explanation
Indices: 100014448--100014623 Score: 352
Period size: 88 Copynumber: 2.0 Consensus size: 88
100014438 AAGCTGCAGG
100014448 AATGGGTTTCATGAACTTCATCAGATTCAATAAAAGTAAAATAAAAATAAATAAAAAGAAGAAGA
1 AATGGGTTTCATGAACTTCATCAGATTCAATAAAAGTAAAATAAAAATAAATAAAAAGAAGAAGA
100014513 AGAAGTAGAAGAAGTGACAATCA
66 AGAAGTAGAAGAAGTGACAATCA
100014536 AATGGGTTTCATGAACTTCATCAGATTCAATAAAAGTAAAATAAAAATAAATAAAAAGAAGAAGA
1 AATGGGTTTCATGAACTTCATCAGATTCAATAAAAGTAAAATAAAAATAAATAAAAAGAAGAAGA
100014601 AGAAGTAGAAGAAGTGACAATCA
66 AGAAGTAGAAGAAGTGACAATCA
100014624 TTCGAAAGTT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.55, C:0.08, G:0.17, T:0.20
Consensus pattern (88 bp):
AATGGGTTTCATGAACTTCATCAGATTCAATAAAAGTAAAATAAAAATAAATAAAAAGAAGAAGA
AGAAGTAGAAGAAGTGACAATCA
Found at i:100029447 original size:16 final size:17
Alignment explanation
Indices: 100029415--100029450 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 17
100029405 GTGAATTAAT
100029415 TTGAATAAAGTTTATTTG
1 TTGAATAAAG-TTATTTG
100029433 TTGAATAAA-TTATTTG
1 TTGAATAAAGTTATTTG
100029449 TT
1 TT
100029451 TTTGTGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (17 bp):
TTGAATAAAGTTATTTG
Found at i:100034994 original size:20 final size:20
Alignment explanation
Indices: 100034971--100035061 Score: 64
Period size: 20 Copynumber: 4.5 Consensus size: 20
100034961 GACATAAAAC
100034971 ATATTTAAAACACATTAATT
1 ATATTTAAAACACATTAATT
* *
100034991 ATATTT-AAA-ATATT-GTT
1 ATATTTAAAACACATTAATT
* * *
100035008 AGATTCAAACTACTAACATTTAA-C
1 ATATTTAAA--AC--ACA-TTAATT
100035032 ATATTTAAAACACATTAATT
1 ATATTTAAAACACATTAATT
100035052 ATATTTAAAA
1 ATATTTAAAA
100035062 TATTGTTAGA
Statistics
Matches: 52, Mismatches: 10, Indels: 18
0.65 0.12 0.22
Matches are distributed among these distances:
17 6 0.12
18 6 0.12
19 7 0.13
20 20 0.38
22 2 0.04
23 2 0.04
24 9 0.17
ACGTcount: A:0.48, C:0.10, G:0.02, T:0.40
Consensus pattern (20 bp):
ATATTTAAAACACATTAATT
Found at i:100035029 original size:32 final size:32
Alignment explanation
Indices: 100034993--100035091 Score: 105
Period size: 32 Copynumber: 3.2 Consensus size: 32
100034983 CATTAATTAT
100034993 ATTTAAAATATTGTTAGATTCAAACTACTAAC
1 ATTTAAAATATTGTTAGATTCAAACTACTAAC
* ** * * * * *
100035025 ATTTAACATA-T-TTA-AAACACATTAATTAT
1 ATTTAAAATATTGTTAGATTCAAACTACTAAC
100035054 ATTTAAAATATTGTTAGATTCAAACTACTAAC
1 ATTTAAAATATTGTTAGATTCAAACTACTAAC
100035086 ATTTAA
1 ATTTAA
100035092 TACTTTAAAA
Statistics
Matches: 48, Mismatches: 16, Indels: 6
0.69 0.23 0.09
Matches are distributed among these distances:
29 17 0.35
30 4 0.08
31 4 0.08
32 23 0.48
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.39
Consensus pattern (32 bp):
ATTTAAAATATTGTTAGATTCAAACTACTAAC
Found at i:100035064 original size:29 final size:29
Alignment explanation
Indices: 100034971--100035065 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 29
100034961 GACATAAAAC
100034971 ATATTTAAAACACATTAATTATATTTAAA
1 ATATTTAAAACACATTAATTATATTTAAA
** * * * * * *
100035000 ATATTGTTAGATTCAAACTACTAACATTTAAC
1 ATA-T-TTA-AAACACATTAATTATATTTAAA
100035032 ATATTTAAAACACATTAATTATATTTAAA
1 ATATTTAAAACACATTAATTATATTTAAA
100035061 ATATT
1 ATATT
100035066 GTTAGATTCA
Statistics
Matches: 47, Mismatches: 16, Indels: 6
0.68 0.23 0.09
Matches are distributed among these distances:
29 22 0.47
30 4 0.09
31 4 0.09
32 17 0.36
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.41
Consensus pattern (29 bp):
ATATTTAAAACACATTAATTATATTTAAA
Found at i:100035103 original size:61 final size:61
Alignment explanation
Indices: 100034968--100035091 Score: 248
Period size: 61 Copynumber: 2.0 Consensus size: 61
100034958 CATGACATAA
100034968 AACATATTTAAAACACATTAATTATATTTAAAATATTGTTAGATTCAAACTACTAACATTT
1 AACATATTTAAAACACATTAATTATATTTAAAATATTGTTAGATTCAAACTACTAACATTT
100035029 AACATATTTAAAACACATTAATTATATTTAAAATATTGTTAGATTCAAACTACTAACATTT
1 AACATATTTAAAACACATTAATTATATTTAAAATATTGTTAGATTCAAACTACTAACATTT
100035090 AA
1 AA
100035092 TACTTTAAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (61 bp):
AACATATTTAAAACACATTAATTATATTTAAAATATTGTTAGATTCAAACTACTAACATTT
Found at i:100036107 original size:94 final size:95
Alignment explanation
Indices: 100035964--100036137 Score: 280
Period size: 94 Copynumber: 1.8 Consensus size: 95
100035954 TTTTTGTTAA
* * *
100035964 GAAATCTCAATTGAGGAATTTAAACAAGATTTCATCAACTTGTACTATTATCCAAATTACAGATT
1 GAAATATCAATTGAGGAATTTAAACAAGATTTCATCAACTCGTAATATTATCCAAATTACAGATT
100036029 T-AAAGATGCATTCGTCAACGCAATTTCATT
66 TGAAA-ATGCATTCGTCAACGCAATTTCATT
* *
100036059 GAAATATCAATTGAGGAA-TTAAACAATATTTCATCAACTCGTAATATTATTCAAATTACAGATT
1 GAAATATCAATTGAGGAATTTAAACAAGATTTCATCAACTCGTAATATTATCCAAATTACAGATT
100036123 TGAAAATGCATTCGT
66 TGAAAATGCATTCGT
100036138 TCATCAACGC
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
94 53 0.73
95 20 0.27
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (95 bp):
GAAATATCAATTGAGGAATTTAAACAAGATTTCATCAACTCGTAATATTATCCAAATTACAGATT
TGAAAATGCATTCGTCAACGCAATTTCATT
Found at i:100040374 original size:6 final size:6
Alignment explanation
Indices: 100040363--100040390 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
100040353 TGAGATATTA
100040363 AAATAT AAATAT AAATAT AAATAT AAAT
1 AAATAT AAATAT AAATAT AAATAT AAAT
100040391 TTATATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATAT
Found at i:100040728 original size:20 final size:20
Alignment explanation
Indices: 100040700--100040740 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
100040690 CAGTAAAATG
100040700 TTTTCTGGAAAATGATTTAC
1 TTTTCTGGAAAATGATTTAC
*
100040720 TTTTTTGGAAAATGATTTAC
1 TTTTCTGGAAAATGATTTAC
100040740 T
1 T
100040741 GAAAATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (20 bp):
TTTTCTGGAAAATGATTTAC
Found at i:100040866 original size:20 final size:20
Alignment explanation
Indices: 100040841--100040879 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
100040831 TTTATTACAT
100040841 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
100040861 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
100040880 TTTTAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:100044341 original size:6 final size:6
Alignment explanation
Indices: 100044332--100044360 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
100044322 CATTTGTCAT
100044332 TTGCCA TTGCCA TTGCCA TTGCCA TTGCC
1 TTGCCA TTGCCA TTGCCA TTGCCA TTGCC
100044361 TTTACCTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.34, G:0.17, T:0.34
Consensus pattern (6 bp):
TTGCCA
Found at i:100044446 original size:12 final size:12
Alignment explanation
Indices: 100044429--100044453 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
100044419 ATAAGTAAAC
100044429 TCTTTTTTTTTT
1 TCTTTTTTTTTT
100044441 TCTTTTTTTTTT
1 TCTTTTTTTTTT
100044453 T
1 T
100044454 TCATTTCTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TCTTTTTTTTTT
Found at i:100044449 original size:13 final size:13
Alignment explanation
Indices: 100044431--100044455 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100044421 AAGTAAACTC
100044431 TTTTTTTTTTTCT
1 TTTTTTTTTTTCT
100044444 TTTTTTTTTTTC
1 TTTTTTTTTTTC
100044456 ATTTCTCAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTTTTTTTTTCT
Found at i:100046533 original size:33 final size:31
Alignment explanation
Indices: 100046493--100046559 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 31
100046483 TAAGATAATG
100046493 AAAAAAAGCATATATCGA-TAAATTTATAAAAGA
1 AAAAAAAGCATATAT-GATTAAATTTA-AAAA-A
100046526 AAAAAAAGCATATATGATTAAATTTAAAAAA
1 AAAAAAAGCATATATGATTAAATTTAAAAAA
100046557 AAA
1 AAA
100046560 TCTTATTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
31 4 0.12
32 6 0.18
33 23 0.70
ACGTcount: A:0.64, C:0.04, G:0.07, T:0.24
Consensus pattern (31 bp):
AAAAAAAGCATATATGATTAAATTTAAAAAA
Found at i:100046662 original size:22 final size:22
Alignment explanation
Indices: 100046636--100046677 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
100046626 TGATTGGGAG
*
100046636 AAAAA-TTAATATATTAAATTAA
1 AAAAATTTAA-ATATCAAATTAA
100046658 AAAAATTTAAATATCAAATT
1 AAAAATTTAAATATCAAATT
100046678 GAATATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAAATTTAAATATCAAATTAA
Found at i:100052250 original size:81 final size:81
Alignment explanation
Indices: 100052110--100052338 Score: 389
Period size: 81 Copynumber: 2.9 Consensus size: 81
100052100 TAATAATAGT
* *
100052110 ATGGCACTTTAAATTCGATATATATATA--TCTTTTTGATTTCTTTTTTTTTCAAAACATTAGAT
1 ATGGCACTTCAAATTCGATATATATATATTTTTTTTTGATTTCTTTTTTTTTCAAAACATTAGAT
100052173 TGTGTATCAAAAGAGC
66 TGTGTATCAAAAGAGC
100052189 ATGGCACTTCAAATTCGATATATATATATTTTTTTTTGATTTCTTTTTTTTTCAAAACATTAGAT
1 ATGGCACTTCAAATTCGATATATATATATTTTTTTTTGATTTCTTTTTTTTTCAAAACATTAGAT
100052254 TGTGTATCAAAAGAGC
66 TGTGTATCAAAAGAGC
*
100052270 ATGGCACTTCAAATTCGATATA-A-AT-TTTTTTTTTGATATC-TTTTTTTTCAAAACATTAGAT
1 ATGGCACTTCAAATTCGATATATATATATTTTTTTTTGATTTCTTTTTTTTTCAAAACATTAGAT
100052331 TGTGTATC
66 TGTGTATC
100052339 GAAATAGTAG
Statistics
Matches: 145, Mismatches: 3, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
77 29 0.20
78 14 0.10
79 29 0.20
80 1 0.01
81 72 0.50
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (81 bp):
ATGGCACTTCAAATTCGATATATATATATTTTTTTTTGATTTCTTTTTTTTTCAAAACATTAGAT
TGTGTATCAAAAGAGC
Found at i:100053303 original size:13 final size:13
Alignment explanation
Indices: 100053285--100053309 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100053275 ATTGAGCTGG
100053285 TGTTACTTCGATT
1 TGTTACTTCGATT
100053298 TGTTACTTCGAT
1 TGTTACTTCGAT
100053310 GATAAAGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (13 bp):
TGTTACTTCGATT
Found at i:100053645 original size:18 final size:18
Alignment explanation
Indices: 100053619--100053655 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
100053609 TTGAAACTAA
*
100053619 AAAAATATTAAAGAAATT
1 AAAAATATTAAAAAAATT
*
100053637 AAAATTATTAAAAAAATT
1 AAAAATATTAAAAAAATT
100053655 A
1 A
100053656 TAATAAGAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (18 bp):
AAAAATATTAAAAAAATT
Found at i:100055413 original size:30 final size:30
Alignment explanation
Indices: 100055379--100055470 Score: 157
Period size: 30 Copynumber: 3.1 Consensus size: 30
100055369 TTGGTGCCAA
*
100055379 TGGATTTGGGGATTCATCATTGATTTTCTC
1 TGGATTTGGGGATTCATCATTGATCTTCTC
100055409 TGGATTTGGGGATTCATCATTGATCTTCTC
1 TGGATTTGGGGATTCATCATTGATCTTCTC
* *
100055439 TGGATTTGGGGTTTCATCACTGATCTTCTC
1 TGGATTTGGGGATTCATCATTGATCTTCTC
100055469 TG
1 TG
100055471 CCATTTTTTT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 59 1.00
ACGTcount: A:0.15, C:0.16, G:0.24, T:0.45
Consensus pattern (30 bp):
TGGATTTGGGGATTCATCATTGATCTTCTC
Found at i:100056990 original size:16 final size:18
Alignment explanation
Indices: 100056965--100057006 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
100056955 ATTCAAATTA
*
100056965 GTTAAATTAA-TC-AAAC
1 GTTAATTTAATTCAAAAC
100056981 GTTAATTTAATTCAAAAC
1 GTTAATTTAATTCAAAAC
100056999 GATTAATT
1 G-TTAATT
100057007 GAAGAGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 9 0.41
17 2 0.09
18 5 0.23
19 6 0.27
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (18 bp):
GTTAATTTAATTCAAAAC
Found at i:100058218 original size:18 final size:17
Alignment explanation
Indices: 100058191--100058235 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
100058181 AAAAAATAAC
*
100058191 TTATTTAAAAATATT-T
1 TTATCTAAAAATATTAT
100058207 TTATCCTAAAAATATTAT
1 TTAT-CTAAAAATATTAT
100058225 TTATCTAAAAA
1 TTATCTAAAAA
100058236 CACTTTTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 4 0.15
17 17 0.65
18 5 0.19
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (17 bp):
TTATCTAAAAATATTAT
Found at i:100060779 original size:11 final size:11
Alignment explanation
Indices: 100060758--100060821 Score: 51
Period size: 11 Copynumber: 5.5 Consensus size: 11
100060748 AATTACACGT
100060758 TTAACTTTTTAA
1 TTAA-TTTTTAA
100060770 TTAATTTTTAA
1 TTAATTTTTAA
*
100060781 ATAATGTATTT--
1 TTAAT-T-TTTAA
100060792 TTAATTCTTATAA
1 TTAATT-TT-TAA
*
100060805 TTGATTTTTAA
1 TTAATTTTTAA
100060816 TTAATT
1 TTAATT
100060822 CTTCATAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
10 3 0.07
11 24 0.57
12 7 0.17
13 8 0.19
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (11 bp):
TTAATTTTTAA
Found at i:100060832 original size:14 final size:13
Alignment explanation
Indices: 100060792--100060833 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 13
100060782 TAATGTATTT
100060792 TTAATTCTTATAA
1 TTAATTCTTATAA
*
100060805 TTGATT-TT-TAA
1 TTAATTCTTATAA
100060816 TTAATTCTTCATAA
1 TTAATTCTT-ATAA
100060830 TTAA
1 TTAA
100060834 AATATATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
11 8 0.33
12 4 0.17
13 5 0.21
14 7 0.29
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (13 bp):
TTAATTCTTATAA
Found at i:100076180 original size:14 final size:14
Alignment explanation
Indices: 100076161--100076191 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
100076151 CTGAATCTTA
100076161 AAATCCTAAACTTT
1 AAATCCTAAACTTT
*
100076175 AAATCCTGAACTTT
1 AAATCCTAAACTTT
100076189 AAA
1 AAA
100076192 CTCTAAATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.32
Consensus pattern (14 bp):
AAATCCTAAACTTT
Found at i:100080207 original size:7 final size:7
Alignment explanation
Indices: 100080182--100080224 Score: 59
Period size: 7 Copynumber: 6.1 Consensus size: 7
100080172 ATTTAGGGTC
100080182 AAAATTT
1 AAAATTT
* *
100080189 AAGATAT
1 AAAATTT
100080196 AAAATTT
1 AAAATTT
100080203 AAAATTT
1 AAAATTT
100080210 AAAATTT
1 AAAATTT
*
100080217 AATATTT
1 AAAATTT
100080224 A
1 A
100080225 GGGTAAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (7 bp):
AAAATTT
Found at i:100080374 original size:16 final size:18
Alignment explanation
Indices: 100080338--100080376 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
100080328 GTATCATCAC
*
100080338 ATGATCATATGTAATAAT
1 ATGAACATATGTAATAAT
100080356 ATGAACATAT-TAA-AAT
1 ATGAACATATGTAATAAT
100080372 ATGAA
1 ATGAA
100080377 ATGCTGTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 8 0.40
17 3 0.15
18 9 0.45
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.33
Consensus pattern (18 bp):
ATGAACATATGTAATAAT
Found at i:100092026 original size:16 final size:16
Alignment explanation
Indices: 100092005--100092040 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
100091995 AAAACTAAAA
100092005 TTTTTATAACATCCAT
1 TTTTTATAACATCCAT
* *
100092021 TTTTTATAATATTCAT
1 TTTTTATAACATCCAT
100092037 TTTT
1 TTTT
100092041 CTTTAGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTTATAACATCCAT
Found at i:100106750 original size:17 final size:17
Alignment explanation
Indices: 100106722--100106755 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
100106712 ATTTTTAATA
100106722 AAAATTTTATAA-TTTT
1 AAAATTTTATAACTTTT
100106738 AAAATTTTCATAACTTTT
1 AAAATTTT-ATAACTTTT
100106756 GTTTATAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
AAAATTTTATAACTTTT
Found at i:100107195 original size:16 final size:16
Alignment explanation
Indices: 100107163--100107196 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
100107153 CTCGAATTGA
*
100107163 TTGATCTAACCCGATT
1 TTGATCTAACCCAATT
*
100107179 TTGATCTAACTCAATT
1 TTGATCTAACCCAATT
100107195 TT
1 TT
100107197 AAATTAGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (16 bp):
TTGATCTAACCCAATT
Found at i:100107275 original size:26 final size:26
Alignment explanation
Indices: 100107234--100107283 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 26
100107224 GATTTAATTG
100107234 TAAAAATATAAAAATAT-ATGTTTAT
1 TAAAAATATAAAAATATGATGTTTAT
100107259 TAAAAAT-TAAAATAATATGATGTTT
1 TAAAAATAT-AAA-AATATGATGTTT
100107284 TTTTATGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 1 0.05
25 10 0.45
26 5 0.23
27 6 0.27
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (26 bp):
TAAAAATATAAAAATATGATGTTTAT
Found at i:100111650 original size:22 final size:22
Alignment explanation
Indices: 100111608--100111648 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
100111598 TAGATTTAAA
*
100111608 ATTTAAAATATATTGAATTTAT
1 ATTTAAAATATATTAAATTTAT
*
100111630 ATTTAAAA-ATTTTAAATTT
1 ATTTAAAATATATTAAATTT
100111649 TAAAAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
ATTTAAAATATATTAAATTTAT
Found at i:100118556 original size:30 final size:31
Alignment explanation
Indices: 100118513--100118575 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
100118503 CTTAACAAGT
*
100118513 AAATGTTTCTAAAATAAT-AACAAAATTAAC
1 AAATGTTTCTAAAATAATAAAAAAAATTAAC
100118543 AAATGTCTT-TAAAATAATAAAAAAAATTAAC
1 AAATGT-TTCTAAAATAATAAAAAAAATTAAC
100118574 AA
1 AA
100118576 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 15 0.50
31 15 0.50
ACGTcount: A:0.60, C:0.08, G:0.03, T:0.29
Consensus pattern (31 bp):
AAATGTTTCTAAAATAATAAAAAAAATTAAC
Found at i:100120021 original size:5 final size:5
Alignment explanation
Indices: 100120011--100120035 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
100120001 TTGAATCAAT
100120011 ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA
100120036 TAATAATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:100120785 original size:19 final size:19
Alignment explanation
Indices: 100120761--100120816 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
100120751 ATTTAAATTT
100120761 TTTAAAAATGTATTAAAAA
1 TTTAAAAATGTATTAAAAA
* *
100120780 TTTAAAACTG-A-TATAAAC
1 TTTAAAAATGTATTA-AAAA
100120798 TTATAAAAAT-TATTAAAAA
1 TT-TAAAAATGTATTAAAAA
100120817 AATCATAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
17 2 0.07
18 6 0.21
19 19 0.66
20 2 0.07
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.36
Consensus pattern (19 bp):
TTTAAAAATGTATTAAAAA
Found at i:100121299 original size:19 final size:19
Alignment explanation
Indices: 100121248--100121302 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
100121238 TTTTATTATT
*
100121248 TTTAAATAATATTTATAAC
1 TTTAAATAATTTTTATAAC
*
100121267 TTTATATCAATTTTTGATAA-
1 TTTAAAT-AATTTTT-ATAAC
100121287 TTTAAATAATTTTTAT
1 TTTAAATAATTTTTAT
100121303 GATTTTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 2 0.06
19 13 0.42
20 12 0.39
21 4 0.13
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTAAATAATTTTTATAAC
Found at i:100121310 original size:20 final size:20
Alignment explanation
Indices: 100121237--100121310 Score: 55
Period size: 20 Copynumber: 3.8 Consensus size: 20
100121227 CCAAGTAAAG
*
100121237 TTTTTATTATTTTTAAATAA
1 TTTTTATGATTTTTAAATAA
* ** *
100121257 TATTTAT-AACTTTATATCAA
1 TTTTTATGATTTTTAAAT-AA
*
100121277 -TTTT-TGATAATTTAAATAA
1 TTTTTATGAT-TTTTAAATAA
100121296 TTTTTATGATTTTTA
1 TTTTTATGATTTTTA
100121311 TAGAAATTTA
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
18 1 0.03
19 13 0.32
20 22 0.55
21 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTTTATGATTTTTAAATAA
Found at i:100121379 original size:10 final size:10
Alignment explanation
Indices: 100121329--100121410 Score: 57
Period size: 10 Copynumber: 8.5 Consensus size: 10
100121319 TAATACGCAC
*
100121329 TTATATAATT
1 TTATATTATT
* *
100121339 TTAAATATGTT
1 TTATAT-TATT
100121350 TTAT-TTAATT
1 TTATATT-ATT
100121360 TTATA-T-TT
1 TTATATTATT
100121368 TTATATTATT
1 TTATATTATT
* *
100121378 TTGTAATA-T
1 TTATATTATT
*
100121387 TTATAATATT
1 TTATATTATT
100121397 TTATATT-TT
1 TTATATTATT
100121406 TTATA
1 TTATA
100121411 AATTTATATC
Statistics
Matches: 57, Mismatches: 9, Indels: 13
0.72 0.11 0.16
Matches are distributed among these distances:
8 7 0.12
9 17 0.30
10 28 0.49
11 5 0.09
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (10 bp):
TTATATTATT
Found at i:100121388 original size:21 final size:20
Alignment explanation
Indices: 100121329--100121388 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 20
100121319 TAATACGCAC
* *
100121329 TTATATAATTTTAAATATGTT
1 TTATATTATTTTTAATAT-TT
*
100121350 TTAT-TTAATTTT-ATATTT
1 TTATATTATTTTTAATATTT
100121368 TTATATTATTTTGTAATATTT
1 TTATATTATTTT-TAATATTT
100121389 ATAATATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
18 6 0.19
19 10 0.31
20 6 0.19
21 10 0.31
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (20 bp):
TTATATTATTTTTAATATTT
Found at i:100121408 original size:19 final size:19
Alignment explanation
Indices: 100121357--100121419 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
100121347 GTTTTATTTA
*
100121357 ATTTTATA-TTTTTATATT
1 ATTTTATATTTTTTATAAT
* * *
100121375 ATTTTGTAATATTTATAAT
1 ATTTTATATTTTTTATAAT
100121394 ATTTTATATTTTTTATAA-
1 ATTTTATATTTTTTATAAT
100121412 A-TTTATAT
1 ATTTTATAT
100121420 CAATTTAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
17 7 0.18
18 8 0.21
19 23 0.61
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
ATTTTATATTTTTTATAAT
Found at i:100122189 original size:6 final size:6
Alignment explanation
Indices: 100122180--100122209 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
100122170 TTTTATGATT
100122180 TGGAGA TGGAGA TGGAGA TGGAGA TGGAGA
1 TGGAGA TGGAGA TGGAGA TGGAGA TGGAGA
100122210 GGGATATTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.50, T:0.17
Consensus pattern (6 bp):
TGGAGA
Found at i:100124997 original size:79 final size:79
Alignment explanation
Indices: 100124839--100125019 Score: 265
Period size: 79 Copynumber: 2.3 Consensus size: 79
100124829 TGTTTCTAAC
* * * * *
100124839 CTTTTATTACTTT-AGACAAGTTCCGTTTTGCAGTTTGAAAGGAATGAGGCAGGAGGGTGGTTGA
1 CTTTTATTCCTTTCAGTCGAGTTCCGTTTTGCAGTTTGAAAGGAAAGAAGCAGGAGGGTGGTTGA
100124903 GGAATGAAGGATAT
66 GGAATGAAGGATAT
* *
100124917 CTTTTATTCCTTTCAGTCGAGTTTCGTTTTGCAGTTTGAAAGGAAAGAAGCGGGAGGGTGGTTGA
1 CTTTTATTCCTTTCAGTCGAGTTCCGTTTTGCAGTTTGAAAGGAAAGAAGCAGGAGGGTGGTTGA
*
100124982 GGAATGAAGGGTAT
66 GGAATGAAGGATAT
*
100124996 CTTTTATTCCTTTCAATCGTAGTT
1 CTTTTATTCCTTTCAGTCG-AGTT
100125020 AGTAATCTCT
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 12 0.13
79 76 0.83
80 4 0.04
ACGTcount: A:0.25, C:0.11, G:0.29, T:0.35
Consensus pattern (79 bp):
CTTTTATTCCTTTCAGTCGAGTTCCGTTTTGCAGTTTGAAAGGAAAGAAGCAGGAGGGTGGTTGA
GGAATGAAGGATAT
Found at i:100129029 original size:20 final size:20
Alignment explanation
Indices: 100128993--100129034 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
100128983 AAACTACATT
100128993 AAAAAAGATAGAGAAAGAAG
1 AAAAAAGATAGAGAAAGAAG
*
100129013 AAAAACAGATAGA-AAAGTAG
1 AAAAA-AGATAGAGAAAGAAG
100129033 AA
1 AA
100129035 GACAATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.69, C:0.02, G:0.21, T:0.07
Consensus pattern (20 bp):
AAAAAAGATAGAGAAAGAAG
Found at i:100133295 original size:99 final size:99
Alignment explanation
Indices: 100133179--100133377 Score: 380
Period size: 99 Copynumber: 2.0 Consensus size: 99
100133169 ATTTCCCTCG
*
100133179 TACACAACCAAACAGAACAGAAAAACGAAGCAAATTTGAAAAAGAAAGGTGAGCAAAGGAAGCTA
1 TACACAACCAAACAGAACAGAAAAACAAAGCAAATTTGAAAAAGAAAGGTGAGCAAAGGAAGCTA
100133244 GGGGTTTTATACTTTGCTTTGTATAACAGAGAAC
66 GGGGTTTTATACTTTGCTTTGTATAACAGAGAAC
*
100133278 TACACAACCAAACAGAACAGAAAAACAAAGCAAATTTGAAAAAGAAAGGTGAGCAGAGGAAGCTA
1 TACACAACCAAACAGAACAGAAAAACAAAGCAAATTTGAAAAAGAAAGGTGAGCAAAGGAAGCTA
100133343 GGGGTTTTATACTTTGCTTTGTATAACAGAGAAC
66 GGGGTTTTATACTTTGCTTTGTATAACAGAGAAC
100133377 T
1 T
100133378 GATCTGATTT
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 98 1.00
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.20
Consensus pattern (99 bp):
TACACAACCAAACAGAACAGAAAAACAAAGCAAATTTGAAAAAGAAAGGTGAGCAAAGGAAGCTA
GGGGTTTTATACTTTGCTTTGTATAACAGAGAAC
Found at i:100134292 original size:23 final size:23
Alignment explanation
Indices: 100134262--100134306 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
100134252 TTTTTAGATT
*
100134262 TAATTTATTTTTATAAATAAATC
1 TAATTTATTTTCATAAATAAATC
100134285 TAATTTATTTTCATAAATAAAT
1 TAATTTATTTTCATAAATAAAT
100134307 AAAATATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (23 bp):
TAATTTATTTTCATAAATAAATC
Found at i:100134316 original size:23 final size:23
Alignment explanation
Indices: 100134267--100134317 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
100134257 AGATTTAATT
* ** *
100134267 TATTTTTATAAATAAATCTAATT
1 TATTTTCATAAATAAATAAAATA
100134290 TATTTTCATAAATAAATAAAATA
1 TATTTTCATAAATAAATAAAATA
100134313 TATTT
1 TATTT
100134318 CATTTAGAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (23 bp):
TATTTTCATAAATAAATAAAATA
Found at i:100136290 original size:18 final size:17
Alignment explanation
Indices: 100136264--100136319 Score: 53
Period size: 18 Copynumber: 3.3 Consensus size: 17
100136254 GTTTTTTTTG
*
100136264 TTATTTAAAAATAAAACA
1 TTATATAAAAATAAAA-A
*
100136282 TTATATAAAATTAAAAA
1 TTATATAAAAATAAAAA
*
100136299 TTA-ATCAAAAA-ATAAA
1 TTATAT-AAAAATAAAAA
100136315 TTATA
1 TTATA
100136320 AAATTGGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
16 9 0.28
17 9 0.28
18 14 0.44
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (17 bp):
TTATATAAAAATAAAAA
Found at i:100139038 original size:37 final size:37
Alignment explanation
Indices: 100138994--100139069 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
100138984 TACAAAAAGT
100138994 AAAAATAATCAAATCTACAACTTTTATAAATTACAAG
1 AAAAATAATCAAATCTACAACTTTTATAAATTACAAG
100139031 AAAAATAATCAAATCTACAACTTTTATAAATTACAAG
1 AAAAATAATCAAATCTACAACTTTTATAAATTACAAG
100139068 AA
1 AA
100139070 CTAATAGAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.55, C:0.13, G:0.03, T:0.29
Consensus pattern (37 bp):
AAAAATAATCAAATCTACAACTTTTATAAATTACAAG
Found at i:100141164 original size:13 final size:13
Alignment explanation
Indices: 100141146--100141170 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100141136 TTATAAAAAG
100141146 ATTAAATTAATTA
1 ATTAAATTAATTA
100141159 ATTAAATTAATT
1 ATTAAATTAATT
100141171 TCAATATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAAATTAATTA
Found at i:100142191 original size:23 final size:22
Alignment explanation
Indices: 100142149--100142191 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
100142139 TTGTTGTATA
**
100142149 TATTATTTTTTTAATTAATGTT
1 TATTATTTTTTTAAACAATGTT
100142171 TATTATTATTTTTAAACAATG
1 TATTATT-TTTTTAAACAATG
100142192 ATATGGGCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (22 bp):
TATTATTTTTTTAAACAATGTT
Found at i:100154313 original size:22 final size:22
Alignment explanation
Indices: 100154265--100154313 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
100154255 ATAATGACAG
* * *
100154265 TATAAAATTAATGATACAGTAA
1 TATAAAAATAATAATACAATAA
100154287 TATAAAAATAATAATACAAATAA
1 TATAAAAATAATAATAC-AATAA
100154310 -ATAA
1 TATAA
100154314 GTATGAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (22 bp):
TATAAAAATAATAATACAATAA
Found at i:100157401 original size:38 final size:39
Alignment explanation
Indices: 100157317--100157451 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
100157307 ACCAATATGG
*
100157317 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
100157356 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
100157394 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
100157435 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
100157452 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:100159024 original size:5 final size:5
Alignment explanation
Indices: 100159014--100159048 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
100159004 TGTTTCTTTT
100159014 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
100159049 CTTAATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:100167955 original size:25 final size:28
Alignment explanation
Indices: 100167910--100167979 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 28
100167900 TATAAATTTT
100167910 AAATATTTTT-AAA-TAATTAATA-A-A
1 AAATATTTTTAAAATTAATTAATACATA
*
100167934 AATTATTTTTAAAATTAA-TAATACATA
1 AAATATTTTTAAAATTAATTAATACATA
*
100167961 AAATAATTTTAAAACTTAA
1 AAATATTTTTAAAA-TTAA
100167980 ATAAAATAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
24 9 0.24
25 8 0.21
26 4 0.11
27 13 0.34
28 4 0.11
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (28 bp):
AAATATTTTTAAAATTAATTAATACATA
Found at i:100167982 original size:29 final size:30
Alignment explanation
Indices: 100167918--100167992 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 30
100167908 TTAAATATTT
*
100167918 TTAAATAATTAATAAAAATTATTTTTAAAA
1 TTAAATAATTAATAAAAATTAATTTTAAAA
100167948 TT-AATAA-TACAT-AAAA-TAATTTTAAAA
1 TTAAATAATTA-ATAAAAATTAATTTTAAAA
*
100167975 CTTAAATAAAATAATAAA
1 -TTAAAT-AATTAATAAA
100167993 TGATATTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
27 10 0.26
28 8 0.21
29 10 0.26
30 6 0.16
31 4 0.11
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (30 bp):
TTAAATAATTAATAAAAATTAATTTTAAAA
Found at i:100168006 original size:23 final size:24
Alignment explanation
Indices: 100167976--100168021 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
100167966 ATTTTAAAAC
100167976 TTAAATAAAATAATA-AATGATAT
1 TTAAATAAAATAATATAATGATAT
*
100167999 TTAAATAATATAATATAATGATA
1 TTAAATAAAATAATATAATGATA
100168022 CATAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (24 bp):
TTAAATAAAATAATATAATGATAT
Found at i:100168027 original size:24 final size:23
Alignment explanation
Indices: 100167977--100168028 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
100167967 TTTTAAAACT
**
100167977 TAAATAAAATAATAAATGATATT
1 TAAATAAAATAATAAATGATACA
*
100168000 TAAATAATATAATATAATGATACA
1 TAAATAAAATAATA-AATGATACA
100168024 TAAAT
1 TAAAT
100168029 TATAAATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
TAAATAAAATAATAAATGATACA
Found at i:100173074 original size:16 final size:15
Alignment explanation
Indices: 100173048--100173077 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
100173038 AACAAACGAT
100173048 AACGAACCCACCAAC
1 AACGAACCCACCAAC
100173063 AACGAGACCCACCAA
1 AACGA-ACCCACCAA
100173078 AATCCAAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.43, G:0.10, T:0.00
Consensus pattern (15 bp):
AACGAACCCACCAAC
Found at i:100184342 original size:13 final size:13
Alignment explanation
Indices: 100184324--100184349 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
100184314 GCCTAAAAGT
100184324 TGAACTTGATATC
1 TGAACTTGATATC
100184337 TGAACTTGATATC
1 TGAACTTGATATC
100184350 GATGATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGAACTTGATATC
Found at i:100189671 original size:21 final size:21
Alignment explanation
Indices: 100189645--100189687 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
100189635 ATCATCACGA
100189645 TACTACTAAATTGGCTGAAAT
1 TACTACTAAATTGGCTGAAAT
100189666 TACTACTAAATTGGCTGAAAT
1 TACTACTAAATTGGCTGAAAT
100189687 T
1 T
100189688 GAATTATCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (21 bp):
TACTACTAAATTGGCTGAAAT
Found at i:100192712 original size:17 final size:16
Alignment explanation
Indices: 100192675--100192713 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
100192665 TTATATTAAT
100192675 TTGATTCTATGTTATA
1 TTGATTCTATGTTATA
* *
100192691 ATGATTCTATTTTTATA
1 TTGATTCTA-TGTTATA
100192708 TTGATT
1 TTGATT
100192714 TGATTCTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.59
Consensus pattern (16 bp):
TTGATTCTATGTTATA
Found at i:100192715 original size:38 final size:37
Alignment explanation
Indices: 100192660--100192734 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 37
100192650 ATTGCAGTTG
100192660 TATTTTTATATTAATTTGATTCTATGTTATAATGATTC
1 TATTTTTATATTAATTTGATTCTATGTTATAAT-ATTC
*
100192698 TATTTTTATATTGATTTGATTCTATGTTATAATATTC
1 TATTTTTATATTAATTTGATTCTATGTTATAATATTC
100192735 ATAGAAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 4 0.11
38 32 0.89
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (37 bp):
TATTTTTATATTAATTTGATTCTATGTTATAATATTC
Found at i:100192720 original size:22 final size:21
Alignment explanation
Indices: 100192660--100192722 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
100192650 ATTGCAGTTG
100192660 TATTTTTATATTAATTTGATTC
1 TATTTTTATATT-ATTTGATTC
*
100192682 TA-TGTTATA--A--TGATTC
1 TATTTTTATATTATTTGATTC
100192698 TATTTTTATATTGATTTGATTC
1 TATTTTTATATT-ATTTGATTC
100192720 TAT
1 TAT
100192723 GTTATAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
16 8 0.24
17 6 0.18
18 1 0.03
20 1 0.03
21 6 0.18
22 11 0.33
ACGTcount: A:0.27, C:0.05, G:0.08, T:0.60
Consensus pattern (21 bp):
TATTTTTATATTATTTGATTC
Found at i:100192747 original size:38 final size:38
Alignment explanation
Indices: 100192667--100192747 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
100192657 TTGTATTTTT
*****
100192667 ATATTAATTTGATTCTATGTTATAATGATTCTATTTTT
1 ATATTAATTTGATTCTATGTTATAATGATTCTAGAAAA
*
100192705 ATATTGATTTGATTCTATGTTATAAT-ATTCATAGAAAA
1 ATATTAATTTGATTCTATGTTATAATGATTC-TAGAAAA
100192743 ATATT
1 ATATT
100192748 TAATCAAGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
37 4 0.11
38 32 0.89
ACGTcount: A:0.35, C:0.05, G:0.09, T:0.52
Consensus pattern (38 bp):
ATATTAATTTGATTCTATGTTATAATGATTCTAGAAAA
Found at i:100195724 original size:17 final size:17
Alignment explanation
Indices: 100195702--100195738 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
100195692 TTTAAGAGTT
100195702 TATCTTAGATAGAATGA
1 TATCTTAGATAGAATGA
100195719 TATCTTAGATAGAATGA
1 TATCTTAGATAGAATGA
100195736 TAT
1 TAT
100195739 TAAAAAGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (17 bp):
TATCTTAGATAGAATGA
Found at i:100197334 original size:21 final size:21
Alignment explanation
Indices: 100197310--100197352 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
100197300 TATTGGCTCT
100197310 TATTTTAAATTA-ATTTTAAAA
1 TATTTT-AATTATATTTTAAAA
*
100197331 TATTTTAATTATATTTTTAAA
1 TATTTTAATTATATTTTAAAA
100197352 T
1 T
100197353 TATCAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TATTTTAATTATATTTTAAAA
Found at i:100198969 original size:34 final size:31
Alignment explanation
Indices: 100198922--100198984 Score: 90
Period size: 34 Copynumber: 1.9 Consensus size: 31
100198912 AAATCATTTG
100198922 AATTTAGAAAATTTAAAAACATATAATAAATAA
1 AATTTAGAAAATTTAAAAAC-TATAA-AAATAA
*
100198955 AATTCTAGAAAATTTAATAACTATAAAAAT
1 AATT-TAGAAAATTTAAAAACTATAAAAAT
100198985 GTTTTTTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 4 0.14
33 9 0.32
34 15 0.54
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (31 bp):
AATTTAGAAAATTTAAAAACTATAAAAATAA
Found at i:100204019 original size:30 final size:33
Alignment explanation
Indices: 100203959--100204019 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
100203949 TCTACTAAAA
*
100203959 AAAATGAGCAAATTAGTTCCTGTATGTTACATC
1 AAAATGAGCAAACTAGTTCCTGTATGTTACATC
*
100203992 AAAA-GAGCAAACTAG-TCCT-TCTGTTACA
1 AAAATGAGCAAACTAGTTCCTGTATGTTACA
100204020 AGTTCTATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 8 0.31
31 4 0.15
32 10 0.38
33 4 0.15
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (33 bp):
AAAATGAGCAAACTAGTTCCTGTATGTTACATC
Found at i:100224125 original size:27 final size:31
Alignment explanation
Indices: 100224085--100224153 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 31
100224075 TTAGCCTCAA
*
100224085 GGTTC-AATTTGATACCT-AA-AT-TTTTTT
1 GGTTCAAATTAGATACCTGAACATGTTTTTT
*
100224112 GG-TCAAATTAGATACCTGAACTTGTTTTTT
1 GGTTCAAATTAGATACCTGAACATGTTTTTT
100224142 GGTTCAAATTAG
1 GGTTCAAATTAG
100224154 TATATGAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 2 0.06
27 13 0.37
28 2 0.06
29 1 0.03
30 8 0.23
31 9 0.26
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.45
Consensus pattern (31 bp):
GGTTCAAATTAGATACCTGAACATGTTTTTT
Found at i:100224142 original size:30 final size:30
Alignment explanation
Indices: 100224106--100224165 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
100224096 ATACCTAAAT
100224106 TTTTTTGG-TCAAATTAG-ATACCTGAACTTG
1 TTTTTTGGTTCAAATTAGTATA--TGAACTTG
100224136 TTTTTTGGTTCAAATTAGTATATGAACTTG
1 TTTTTTGGTTCAAATTAGTATATGAACTTG
100224166 ACTTCATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 16 0.57
31 9 0.32
32 3 0.11
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.47
Consensus pattern (30 bp):
TTTTTTGGTTCAAATTAGTATATGAACTTG
Found at i:100229877 original size:21 final size:21
Alignment explanation
Indices: 100229829--100229880 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 21
100229819 ATCAATTTAA
*
100229829 TATT-TAATATTTTTAATTAT
1 TATTATAATATATTTAATTAT
100229849 T-TTA-AATATATTTACATT-T
1 TATTATAATATATTTA-ATTAT
100229868 TATTATAATATAT
1 TATTATAATATAT
100229881 AAATAAGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
19 13 0.48
20 7 0.26
21 7 0.26
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTATAATATATTTAATTAT
Found at i:100230876 original size:22 final size:22
Alignment explanation
Indices: 100230830--100230870 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
100230820 AATTTCAAAC
100230830 AAAAAATGTGAGATTAGATTTG
1 AAAAAATGTGAGATTAGATTTG
100230852 AAAAAAT-TGA-ATTAGATTT
1 AAAAAATGTGAGATTAGATTT
100230871 TCGAAATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
21 3 0.16
22 7 0.37
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (22 bp):
AAAAAATGTGAGATTAGATTTG
Found at i:100232792 original size:229 final size:230
Alignment explanation
Indices: 100232201--100232892 Score: 1323
Period size: 230 Copynumber: 3.0 Consensus size: 230
100232191 CATCAGTCAC
100232201 ATTAACCTTGAGAATCAAATAACAAATTTTAATAGTAACTAATCTCCTTGAGTATATTTGAATAA
1 ATTAACCTTGAGAATCAAATAACAAATTTTAATAGTAACTAATCTCCTTGAGTATATTTGAATAA
100232266 GTGTTTCAACACAATTTAAATTTAATCACCTTGTCTAGTGTCGTGGTTTCTTGTGTAGTAGCCTT
66 GTGTTTCAACACAATTTAAATTTAATCACCTTGTCTAGTGTCGTGGTTTCTTGTGTAGTAGCCTT
100232331 AACTGTCATGTCACTTTCTTCTGCACTAAAAGCTTGCAAGGGAAAATGCTCCTGAAAAGAAAAAA
131 AACTGTCATGTCACTTTCTTCTGCACTAAAAGCTTGCAAGGGAAAATGCTCCTGAAAAGAAAAAA
100232396 TAAAACCAATAAGCATGGAAAAAAATATCATTGAT
196 TAAAACCAATAAGCATGGAAAAAAATATCATTGAT
100232431 ATTAACCTTGAGAATCAAATAACAAATTTTAATAGTAACTAATCTCCTTGAGTATATTTGAATAA
1 ATTAACCTTGAGAATCAAATAACAAATTTTAATAGTAACTAATCTCCTTGAGTATATTTGAATAA
*
100232496 GTGTTTCAACGCAATTTAAATTTAATCACCTTGTCTAGTGTCGTGGTTTCTTGTGTAGTAGCCTT
66 GTGTTTCAACACAATTTAAATTTAATCACCTTGTCTAGTGTCGTGGTTTCTTGTGTAGTAGCCTT
100232561 AACTGTCATGTCACTTTCTTCTGCACTAAAAGCTTGCAAGGGAAAATGCTCCTGAAAAGAAAAAA
131 AACTGTCATGTCACTTTCTTCTGCACTAAAAGCTTGCAAGGGAAAATGCTCCTGAAAAGAAAAAA
100232626 TAAAACCAATAAGCATGG-AAAAAATATCATTGAT
196 TAAAACCAATAAGCATGGAAAAAAATATCATTGAT
100232660 ATTAACCTTGAGAATCAAATAACAAATTTTAATAGTAACTAATCTCCTTGAGTATATTTGAATAA
1 ATTAACCTTGAGAATCAAATAACAAATTTTAATAGTAACTAATCTCCTTGAGTATATTTGAATAA
* * **
100232725 GTGTTTCAACACAATTTAAATTTAATCACCTCGTCTAGTATTTTGGTTTCTTGTGTAGTAGCCTT
66 GTGTTTCAACACAATTTAAATTTAATCACCTTGTCTAGTGTCGTGGTTTCTTGTGTAGTAGCCTT
*
100232790 AACTGTCATGTCACTTTCTTCTGCACTAAAAGCTTGCAAGGGAAAATGCTTCTGAAAAGAAAAAA
131 AACTGTCATGTCACTTTCTTCTGCACTAAAAGCTTGCAAGGGAAAATGCTCCTGAAAAGAAAAAA
100232855 TAAAACCAATAAGCATGGAAAAAAATATCATTGAT
196 TAAAACCAATAAGCATGGAAAAAAATATCATTGAT
100232890 ATT
1 ATT
100232893 GTAATCTAGT
Statistics
Matches: 454, Mismatches: 7, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
229 223 0.49
230 231 0.51
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.33
Consensus pattern (230 bp):
ATTAACCTTGAGAATCAAATAACAAATTTTAATAGTAACTAATCTCCTTGAGTATATTTGAATAA
GTGTTTCAACACAATTTAAATTTAATCACCTTGTCTAGTGTCGTGGTTTCTTGTGTAGTAGCCTT
AACTGTCATGTCACTTTCTTCTGCACTAAAAGCTTGCAAGGGAAAATGCTCCTGAAAAGAAAAAA
TAAAACCAATAAGCATGGAAAAAAATATCATTGAT
Found at i:100233684 original size:452 final size:452
Alignment explanation
Indices: 100232840--100233748 Score: 1809
Period size: 452 Copynumber: 2.0 Consensus size: 452
100232830 GGAAAATGCT
100232840 TCTGAAAAGAAAAAATAAAACCAATAAGCATGGAAAAAAATATCATTGATATTGTAATCTAGTAT
1 TCTGAAAAGAAAAAATAAAACCAATAAGCATGGAAAAAAATATCATTGATATTGTAATCTAGTAT
100232905 CACATGTGTGATGTCATGTCAGCTTATTATTTCAGCGTATTACTCACAAAAAATTCGATTAATGG
66 CACATGTGTGATGTCATGTCAGCTTATTATTTCAGCGTATTACTCACAAAAAATTCGATTAATGG
100232970 ATTTAATTGTTGTTATTTGCGTCAAGACTAAAATTTTAAAATTCGAAGAGTATATGAATTAAGAA
131 ATTTAATTGTTGTTATTTGCGTCAAGACTAAAATTTTAAAATTCGAAGAGTATATGAATTAAGAA
100233035 ATATTCAATTTGAGGACATGGAGTAAATCTACAACAACTTTACATATAGTACACGACTAATAATA
196 ATATTCAATTTGAGGACATGGAGTAAATCTACAACAACTTTACATATAGTACACGACTAATAATA
100233100 TAATTTAACTAAATAGATTTAACGTTTGGGTCAAAACTAAAATTTCAAAATTCGAAGAGCACGAG
261 TAATTTAACTAAATAGATTTAACGTTTGGGTCAAAACTAAAATTTCAAAATTCGAAGAGCACGAG
100233165 GACTAAAATTGACCATTGACACAATTGAAGCAGAGTACAAGAACTAACAGCACAATTTGACCATT
326 GACTAAAATTGACCATTGACACAATTGAAGCAGAGTACAAGAACTAACAGCACAATTTGACCATT
100233230 TTAATATCTTCTTTGCAATCAATGATTATGTACAAGAAACAAGATTTGAACTTAGTAACACG
391 TTAATATCTTCTTTGCAATCAATGATTATGTACAAGAAACAAGATTTGAACTTAGTAACACG
100233292 TCTGAAAAGAAAAAATAAAACCAATAAGCATGGAAAAAAATATCATTGATATTGTAATCTAGTAT
1 TCTGAAAAGAAAAAATAAAACCAATAAGCATGGAAAAAAATATCATTGATATTGTAATCTAGTAT
100233357 CACATGTGTGATGTCATGTCAGCTTATTATTTCAGCGTATTACTCACAAAAAATTCGATTAATGG
66 CACATGTGTGATGTCATGTCAGCTTATTATTTCAGCGTATTACTCACAAAAAATTCGATTAATGG
*
100233422 ATTTAATTGTTGTTATTTGCGTCAAGACTAAAATTTTTAAATTCGAAGAGTATATGAATTAAGAA
131 ATTTAATTGTTGTTATTTGCGTCAAGACTAAAATTTTAAAATTCGAAGAGTATATGAATTAAGAA
100233487 ATATTCAATTTGAGGACATGGAGTAAATCTACAACAACTTTACATATAGTACACGACTAATAATA
196 ATATTCAATTTGAGGACATGGAGTAAATCTACAACAACTTTACATATAGTACACGACTAATAATA
100233552 TAATTTAACTAAATAGATTTAACGTTTGGGTCAAAACTAAAATTTCAAAATTCGAAGAGCACGAG
261 TAATTTAACTAAATAGATTTAACGTTTGGGTCAAAACTAAAATTTCAAAATTCGAAGAGCACGAG
100233617 GACTAAAATTGACCATTGACACAATTGAAGCAGAGTACAAGAACTAACAGCACAATTTGACCATT
326 GACTAAAATTGACCATTGACACAATTGAAGCAGAGTACAAGAACTAACAGCACAATTTGACCATT
100233682 TTAATATCTTCTTTGCAATCAATGATTATGTACAAGAAACAAGATTTGAACTTAGTAACACG
391 TTAATATCTTCTTTGCAATCAATGATTATGTACAAGAAACAAGATTTGAACTTAGTAACACG
100233744 TCTGA
1 TCTGA
100233749 GTTTTAAAGT
Statistics
Matches: 456, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
452 456 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (452 bp):
TCTGAAAAGAAAAAATAAAACCAATAAGCATGGAAAAAAATATCATTGATATTGTAATCTAGTAT
CACATGTGTGATGTCATGTCAGCTTATTATTTCAGCGTATTACTCACAAAAAATTCGATTAATGG
ATTTAATTGTTGTTATTTGCGTCAAGACTAAAATTTTAAAATTCGAAGAGTATATGAATTAAGAA
ATATTCAATTTGAGGACATGGAGTAAATCTACAACAACTTTACATATAGTACACGACTAATAATA
TAATTTAACTAAATAGATTTAACGTTTGGGTCAAAACTAAAATTTCAAAATTCGAAGAGCACGAG
GACTAAAATTGACCATTGACACAATTGAAGCAGAGTACAAGAACTAACAGCACAATTTGACCATT
TTAATATCTTCTTTGCAATCAATGATTATGTACAAGAAACAAGATTTGAACTTAGTAACACG
Found at i:100238969 original size:8 final size:8
Alignment explanation
Indices: 100238956--100238980 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
100238946 CTATGAATAA
100238956 AATTATAG
1 AATTATAG
100238964 AATTATAG
1 AATTATAG
100238972 AATTATAG
1 AATTATAG
100238980 A
1 A
100238981 TTTAATCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (8 bp):
AATTATAG
Found at i:100244328 original size:31 final size:31
Alignment explanation
Indices: 100244293--100244354 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
100244283 GTTGATGGAC
*
100244293 TTAAATAAAAAC-TTCTGAATAATTTAATGAT
1 TTAAATAAAAACTTTC-AAATAATTTAATGAT
100244324 TTAAATAAAAACTTTCAAATAATTTAATGAT
1 TTAAATAAAAACTTTCAAATAATTTAATGAT
100244355 CATTTTAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 26 0.90
32 3 0.10
ACGTcount: A:0.50, C:0.06, G:0.05, T:0.39
Consensus pattern (31 bp):
TTAAATAAAAACTTTCAAATAATTTAATGAT
Found at i:100267492 original size:15 final size:15
Alignment explanation
Indices: 100267467--100267519 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
100267457 TTAAATTTAG
*
100267467 CATTTAATTTTTCAA
1 CATTTATTTTTTCAA
*
100267482 TATTTATTTTTTCAA
1 CATTTATTTTTTCAA
*
100267497 CATTTA-TTTTT-AG
1 CATTTATTTTTTCAA
100267510 CATTTATTTT
1 CATTTATTTT
100267520 GGTCAATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
13 7 0.21
14 8 0.24
15 18 0.55
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.62
Consensus pattern (15 bp):
CATTTATTTTTTCAA
Found at i:100268307 original size:22 final size:21
Alignment explanation
Indices: 100268267--100268309 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
100268257 TAGTCCCTAT
100268267 ATTTTTTATTTTCATAATTTA
1 ATTTTTTATTTTCATAATTTA
100268288 ATTTTTGTACTTTTCA-AATTTA
1 ATTTTT-TA-TTTTCATAATTTA
100268310 GGTTTAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 8 0.40
23 6 0.30
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTTTTTATTTTCATAATTTA
Found at i:100270230 original size:30 final size:29
Alignment explanation
Indices: 100270196--100270263 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
100270186 TAATTTAAAA
* *
100270196 AAAATTAAATCAAAGCAAAATTTTATGTAT
1 AAAATTAAATCAAAACAAAA-TTTATATAT
* *
100270226 AAAATTATA-CAAAATAAAATTTATATAT
1 AAAATTAAATCAAAACAAAATTTATATAT
*
100270254 ATAATTAAAT
1 AAAATTAAAT
100270264 ATTAAACCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
28 15 0.48
29 8 0.26
30 8 0.26
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.35
Consensus pattern (29 bp):
AAAATTAAATCAAAACAAAATTTATATAT
Found at i:100272865 original size:61 final size:61
Alignment explanation
Indices: 100272770--100272884 Score: 230
Period size: 61 Copynumber: 1.9 Consensus size: 61
100272760 GCATCATTTT
100272770 TGTTCATAGAATGTTTCTCCTACTGGCAACCATTAGAGATAATTGTGAAAAATGCCATATA
1 TGTTCATAGAATGTTTCTCCTACTGGCAACCATTAGAGATAATTGTGAAAAATGCCATATA
100272831 TGTTCATAGAATGTTTCTCCTACTGGCAACCATTAGAGATAATTGTGAAAAATG
1 TGTTCATAGAATGTTTCTCCTACTGGCAACCATTAGAGATAATTGTGAAAAATG
100272885 GGGAGTGGCA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 54 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (61 bp):
TGTTCATAGAATGTTTCTCCTACTGGCAACCATTAGAGATAATTGTGAAAAATGCCATATA
Found at i:100279848 original size:22 final size:23
Alignment explanation
Indices: 100279823--100279866 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
100279813 GTACCAAAAA
* *
100279823 ATTAGAATTTTTTATTA-ATTTT
1 ATTAGAAATTTTGATTATATTTT
*
100279845 ATTATAAATTTTGATTATATTT
1 ATTAGAAATTTTGATTATATTT
100279867 ATTTTTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (23 bp):
ATTAGAAATTTTGATTATATTTT
Found at i:100285156 original size:21 final size:22
Alignment explanation
Indices: 100285113--100285160 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
100285103 AAACCACACC
*
100285113 AAAATAGTGACAAAAGAAAAGCA
1 AAAATAGTGA-AAAACAAAAGCA
*
100285136 AAAATAGTG-AAAACAACAGCA
1 AAAATAGTGAAAAACAAAAGCA
100285157 AAAA
1 AAAA
100285161 GCATCAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 14 0.61
23 9 0.39
ACGTcount: A:0.67, C:0.10, G:0.15, T:0.08
Consensus pattern (22 bp):
AAAATAGTGAAAAACAAAAGCA
Found at i:100285711 original size:11 final size:11
Alignment explanation
Indices: 100285695--100285720 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
100285685 TGCTTATACT
100285695 AAAAAAAATAA
1 AAAAAAAATAA
100285706 AAAAAAAATAA
1 AAAAAAAATAA
100285717 AAAA
1 AAAA
100285721 GGTGTAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:100287513 original size:26 final size:25
Alignment explanation
Indices: 100287474--100287523 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
100287464 AAAAATTATA
*
100287474 TTATCCTTTGGAAAACGACAACCCT
1 TTATCCTCTGGAAAACGACAACCCT
100287499 TTATCCCTCTGGAAAACGACAACCC
1 TTAT-CCTCTGGAAAACGACAACCC
100287524 AAGATCCAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.32, C:0.32, G:0.12, T:0.24
Consensus pattern (25 bp):
TTATCCTCTGGAAAACGACAACCCT
Found at i:100288586 original size:25 final size:27
Alignment explanation
Indices: 100288553--100288607 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
100288543 ATGGTATAAT
* *
100288553 TTTGCTTTAATATTGA-CCATAAATTA
1 TTTGCTTTAATAATGATACATAAATTA
*
100288579 TTTG-TTTAATAATGATATATAAATTA
1 TTTGCTTTAATAATGATACATAAATTA
100288605 TTT
1 TTT
100288608 TTATCTCACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.51
Consensus pattern (27 bp):
TTTGCTTTAATAATGATACATAAATTA
Found at i:100291058 original size:31 final size:31
Alignment explanation
Indices: 100290993--100291058 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
100290983 TGAAAACAAT
* * *
100290993 AATTCTACATTTTTTAAAAGGTTAATGGTTA
1 AATTCGACATTTTTTAAAAGGTTAATGATCA
*
100291024 AATTCGACTATTTTTTAAAA-GTTGATGATCA
1 AATTCGAC-ATTTTTTAAAAGGTTAATGATCA
100291055 AATT
1 AATT
100291059 TAGGTCAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 19 0.63
32 11 0.37
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (31 bp):
AATTCGACATTTTTTAAAAGGTTAATGATCA
Found at i:100299004 original size:2 final size:2
Alignment explanation
Indices: 100298997--100299030 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
100298987 GTGTTTCCTT
*
100298997 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
100299031 AAAAATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53
Consensus pattern (2 bp):
TG
Found at i:100303906 original size:13 final size:13
Alignment explanation
Indices: 100303884--100303917 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
100303874 TAAACAATTT
*
100303884 AATTTATATTTTA
1 AATTTTTATTTTA
100303897 AATTTTTATTTTA
1 AATTTTTATTTTA
100303910 AATGTTTT
1 AAT-TTTT
100303918 TTGTAATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (13 bp):
AATTTTTATTTTA
Found at i:100304375 original size:18 final size:18
Alignment explanation
Indices: 100304348--100304388 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
100304338 AAGTAACACC
*
100304348 TAAA-ATAATTTGAGAAA
1 TAAAGATAATTTGAAAAA
100304365 TAAAGATAATTTGAAAAA
1 TAAAGATAATTTGAAAAA
100304383 TCAAAG
1 T-AAAG
100304389 TCTTTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.19
18 13 0.62
19 4 0.19
ACGTcount: A:0.59, C:0.02, G:0.12, T:0.27
Consensus pattern (18 bp):
TAAAGATAATTTGAAAAA
Found at i:100306551 original size:25 final size:25
Alignment explanation
Indices: 100306523--100306583 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
100306513 AAAAATAGAT
*
100306523 TTAAAAATATAATATAT-TAAACACA
1 TTAAAAATA-AATATATCTAAACAAA
* *
100306548 TT-AAAATAAATATTTCTCAACAAA
1 TTAAAAATAAATATATCTAAACAAA
100306572 TTAAAAATAAAT
1 TTAAAAATAAAT
100306584 TTAAAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 6 0.19
24 14 0.45
25 11 0.35
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (25 bp):
TTAAAAATAAATATATCTAAACAAA
Found at i:100308138 original size:19 final size:21
Alignment explanation
Indices: 100308114--100308156 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
100308104 TTATATTTAT
100308114 AAAAAATT-A-TAAAATAATA
1 AAAAAATTAATTAAAATAATA
*
100308133 AAAAAATTAATTAAAATGATA
1 AAAAAATTAATTAAAATAATA
100308154 AAA
1 AAA
100308157 TTAAAGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.38
20 1 0.05
21 12 0.57
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAAAATTAATTAAAATAATA
Found at i:100316058 original size:104 final size:104
Alignment explanation
Indices: 100315950--100316157 Score: 380
Period size: 104 Copynumber: 2.0 Consensus size: 104
100315940 TTCATGTGAC
100315950 ATGTTATGTGTCATTATTTAATTATTTTGTTAGTTATGCTGGTTTTTAACAGTTCAAATTAAATA
1 ATGTTATGTGTCATTATTTAATTATTTTGTTAGTTATGCTGGTTTTTAACAGTTCAAATTAAATA
*
100316015 ATTTTTTAACAAAAAAATTAGTATACTCTTTGATCTAAT
66 ATTTTTTAACAAAAAAATCAGTATACTCTTTGATCTAAT
* *
100316054 ATGTTATGTGTCATTATTTAATTATTTTGTTAGTTATGGTGGTTTTTAACAGTTTAAATTAAATA
1 ATGTTATGTGTCATTATTTAATTATTTTGTTAGTTATGCTGGTTTTTAACAGTTCAAATTAAATA
*
100316119 ATTTTTTAACAAAAAAATCAGTATACTTTTTGATCTAAT
66 ATTTTTTAACAAAAAAATCAGTATACTCTTTGATCTAAT
100316158 GGTCAAGATT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 100 1.00
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.49
Consensus pattern (104 bp):
ATGTTATGTGTCATTATTTAATTATTTTGTTAGTTATGCTGGTTTTTAACAGTTCAAATTAAATA
ATTTTTTAACAAAAAAATCAGTATACTCTTTGATCTAAT
Found at i:100317797 original size:103 final size:104
Alignment explanation
Indices: 100317669--100317874 Score: 326
Period size: 104 Copynumber: 2.0 Consensus size: 104
100317659 TCATGAGTTG
*
100317669 TAACATTTAAAGTGTGCCTTGAGCCATTTACAA-GCTTAGACCAATTCATGAGTCGAGTTACTCA
1 TAACATGTAAAGTGTGCCTTGAGCCATTTACAACGCTTAGACCAATTCATGAGTCGAGTTACTCA
* *
100317733 CATAAGCTAAAAAACGTACCC-TAATTATGAGAGAATTTA
66 CATAAGCTAAAAAACATACCCAAAATT-TGAGAGAATTTA
* * *
100317772 TAACATGTAAAGTGTGCCTTTAGCCATTTACAACGCTTAGATCAATTCATGGGTCGAGTTACTCA
1 TAACATGTAAAGTGTGCCTTGAGCCATTTACAACGCTTAGACCAATTCATGAGTCGAGTTACTCA
*
100317837 CATAAGCTCAAAAACATACCCAAAATTTGAGAGAATTT
66 CATAAGCTAAAAAACATACCCAAAATTTGAGAGAATTT
100317875 GAACAAAATA
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
103 31 0.33
104 59 0.63
105 4 0.04
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (104 bp):
TAACATGTAAAGTGTGCCTTGAGCCATTTACAACGCTTAGACCAATTCATGAGTCGAGTTACTCA
CATAAGCTAAAAAACATACCCAAAATTTGAGAGAATTTA
Found at i:100326152 original size:21 final size:20
Alignment explanation
Indices: 100326119--100326159 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
100326109 GAAATATTGA
* *
100326119 TAATTTTTTATTTAGAATTT
1 TAATTTTTAATTTAAAATTT
100326139 TAATTTTTAAATTTAAAATTT
1 TAATTTTT-AATTTAAAATTT
100326160 GGAATTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TAATTTTTAATTTAAAATTT
Found at i:100330239 original size:13 final size:13
Alignment explanation
Indices: 100330216--100330252 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
100330206 TATTATTGTA
100330216 TTTTTAT-TTTAT
1 TTTTTATATTTAT
100330228 TTTTTATATTTAT
1 TTTTTATATTTAT
*
100330241 TTTATATATTTA
1 TTTTTATATTTA
100330253 ATACATATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTATATTTAT
Found at i:100332999 original size:52 final size:50
Alignment explanation
Indices: 100332932--100333093 Score: 163
Period size: 52 Copynumber: 3.3 Consensus size: 50
100332922 GGCAGCATGT
* * *
100332932 GAAATGTGATTTGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCTTTGGA
1 GAAATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGC-AT-CA
* * * *
100332984 GAAATGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATCA
1 GAAATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCA
* * *
100333034 G---TGTGATATGTG-ATCCGTATAAGACCATGGCTGGGCTATGGCCTC-
1 GAAATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCA
**
100333079 GGTATGTGATATGTG
1 GAAATGTGATATGTG
100333094 ACTATGTGCA
Statistics
Matches: 93, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 26 0.28
47 11 0.12
48 11 0.12
50 2 0.02
51 1 0.01
52 41 0.44
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (50 bp):
GAAATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCA
Found at i:100335288 original size:20 final size:19
Alignment explanation
Indices: 100335265--100335303 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
100335255 GTTTAATGCA
100335265 ATTT-TTTTTGTAATAGATTT
1 ATTTATTTTT-TAATA-ATTT
100335285 ATTTATTTTTTAATAATTT
1 ATTTATTTTTTAATAATTT
100335304 TGAACCACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 9 0.50
21 5 0.28
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (19 bp):
ATTTATTTTTTAATAATTT
Found at i:100335635 original size:21 final size:22
Alignment explanation
Indices: 100335609--100335650 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
100335599 CTCGAAGGTC
* *
100335609 AAAGTGATA-AAAATTAAAATT
1 AAAGTGAGAGAAAATAAAAATT
100335630 AAAGTGAGAGAAAATAAAAAT
1 AAAGTGAGAGAAAATAAAAAT
100335651 AAACATTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (22 bp):
AAAGTGAGAGAAAATAAAAATT
Found at i:100335653 original size:21 final size:21
Alignment explanation
Indices: 100335609--100335653 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
100335599 CTCGAAGGTC
* *
100335609 AAAGTGATAAAAATTAAAATT
1 AAAGTGAGAAAAATTAAAAAT
100335630 AAAGTGAGAGAAAA-TAAAAAT
1 AAAGTGAGA-AAAATTAAAAAT
100335651 AAA
1 AAA
100335654 CATTAAGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (21 bp):
AAAGTGAGAAAAATTAAAAAT
Found at i:100345895 original size:12 final size:12
Alignment explanation
Indices: 100345776--100345898 Score: 122
Period size: 12 Copynumber: 10.2 Consensus size: 12
100345766 AGGACCTGCT
*
100345776 AAAGAAGAGAAG
1 AAAGAAGAAAAG
*
100345788 AAGGAAGGAAAA-
1 AAAGAA-GAAAAG
*
100345800 AAGGAAGAAAAG
1 AAAGAAGAAAAG
*
100345812 AAAGAGGAAAAG
1 AAAGAAGAAAAG
* * *
100345824 AAACAGGAGAAG
1 AAAGAAGAAAAG
*
100345836 AAAGAAGAGAAG
1 AAAGAAGAAAAG
* *
100345848 AAGGAAGAGAAG
1 AAAGAAGAAAAG
*
100345860 AAAGAGGAAAAG
1 AAAGAAGAAAAG
100345872 AAAGAAGAAAAG
1 AAAGAAGAAAAG
*
100345884 AAGGAAGAAAAG
1 AAAGAAGAAAAG
100345896 AAA
1 AAA
100345899 TAAATTTAAA
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
11 5 0.05
12 85 0.90
13 4 0.04
ACGTcount: A:0.67, C:0.01, G:0.33, T:0.00
Consensus pattern (12 bp):
AAAGAAGAAAAG
Found at i:100345897 original size:48 final size:48
Alignment explanation
Indices: 100345776--100345897 Score: 174
Period size: 48 Copynumber: 2.5 Consensus size: 48
100345766 AGGACCTGCT
100345776 AAAGAAGAGAAGAAGGAAGGAAAA-AAGGAAGAAAAGAAAGAGGAAAAG
1 AAAGAAGAGAAGAAGGAA-GAAAAGAAGGAAGAAAAGAAAGAGGAAAAG
* * * * *
100345824 AAACAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAAGAGGAAAAG
1 AAAGAAGAGAAGAAGGAAGAAAAGAAGGAAGAAAAGAAAGAGGAAAAG
*
100345872 AAAGAAGAAAAGAAGGAAGAAAAGAA
1 AAAGAAGAGAAGAAGGAAGAAAAGAA
100345898 ATAAATTTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
47 4 0.06
48 59 0.94
ACGTcount: A:0.66, C:0.01, G:0.33, T:0.00
Consensus pattern (48 bp):
AAAGAAGAGAAGAAGGAAGAAAAGAAGGAAGAAAAGAAAGAGGAAAAG
Found at i:100345898 original size:36 final size:36
Alignment explanation
Indices: 100345793--100345898 Score: 142
Period size: 36 Copynumber: 3.0 Consensus size: 36
100345783 AGAAGAAGGA
* * *
100345793 AGGAAAA-AAGGAAGAAAAGAAAGAGGAAAAGAAAC
1 AGGAAAAGAAAGAAGAAAAGAAGGAAGAAAAGAAAC
* * * *
100345828 AGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAAG
1 AGGAAAAGAAAGAAGAAAAGAAGGAAGAAAAGAAAC
100345864 AGGAAAAGAAAGAAGAAAAGAAGGAAGAAAAGAAA
1 AGGAAAAGAAAGAAGAAAAGAAGGAAGAAAAGAAA
100345899 TAAATTTAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
35 6 0.10
36 54 0.90
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.00
Consensus pattern (36 bp):
AGGAAAAGAAAGAAGAAAAGAAGGAAGAAAAGAAAC
Found at i:100347128 original size:28 final size:28
Alignment explanation
Indices: 100347081--100347162 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
100347071 TATACTTTAT
* *
100347081 TTAAACAAATCATTATATTATTTTTGTAA
1 TTAAATAAATCCTTA-ATTATTTTTGTAA
* * *
100347110 TTAACTAAATTCTTAATTATTTTTGTAG
1 TTAAATAAATCCTTAATTATTTTTGTAA
100347138 TTAAATAAATCCTTAATTTATTTTT
1 TTAAATAAATCCTTAA-TTATTTTT
100347163 ACTTATTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 26 0.58
29 19 0.42
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (28 bp):
TTAAATAAATCCTTAATTATTTTTGTAA
Found at i:100347569 original size:41 final size:42
Alignment explanation
Indices: 100347512--100347592 Score: 121
Period size: 41 Copynumber: 1.9 Consensus size: 42
100347502 TTTTTATTCA
100347512 TATTAATCTCAAAACTTGAA-AA-ATTTTCTCAATTTAACTTG
1 TATTAATCTCAAAACTT-AACAATATTTTCTCAATTTAACTTG
*
100347553 TATTAATCTCAAAACTTAACAATTTTTTTCTCAATTTAAC
1 TATTAATCTCAAAACTTAACAA-TATTTTCTCAATTTAAC
100347593 CCCTAAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
40 2 0.06
41 19 0.53
43 15 0.42
ACGTcount: A:0.38, C:0.16, G:0.02, T:0.43
Consensus pattern (42 bp):
TATTAATCTCAAAACTTAACAATATTTTCTCAATTTAACTTG
Found at i:100350551 original size:6 final size:6
Alignment explanation
Indices: 100350518--100350548 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
100350508 GAACTTAGAA
*
100350518 CTGTTC CTGTTC CTGTTC CTGTTC CCGTTC C
1 CTGTTC CTGTTC CTGTTC CTGTTC CTGTTC C
100350549 CGTCCCCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.39, G:0.16, T:0.45
Consensus pattern (6 bp):
CTGTTC
Found at i:100359547 original size:156 final size:154
Alignment explanation
Indices: 100359263--100359729 Score: 621
Period size: 156 Copynumber: 3.0 Consensus size: 154
100359253 TCAAGACTAT
* ** *
100359263 GTCACAATTCAATGATCTTGCTTTTTTCTTGAATCCCCAGAAAAGTAGCGCTAGAGAAAATGCTG
1 GTCACAAGTCAATGATCCAGATTTTTTCTTGAATCCCCAGAAAAGTAGCGCTAGAG-AAATGCTG
* * *
100359328 GACCTGAGGCCATGTCTTCCAATCCAAAGGCTGAATTACCCAATGTTTCATCTGGTCGTTCAGTT
65 GACCTGCGGCCATGTCTTTCAA-CCAAAGGCTGAATTACCCAATGTTTCATCTGGTCATTCAGTT
*
100359393 GAAGCATGTGAATCCACTGGTCTACA
129 GAAGCATGTGCATCCACTGGTCTACA
* **
100359419 GTCACAAGTCAATGGTCCAGATTTTTTCTTGAATCCCCAGAAAAGTATTGCTAGAGAAGATGCTG
1 GTCACAAGTCAATGATCCAGATTTTTTCTTGAATCCCCAGAAAAGTAGCGCTAGAGAA-ATGCTG
* * * *
100359484 CACCTGCGGCCAGGTCTTTTAACCGAAAGGCTGAATCACCCAATGGTTT-ATCTGGTCATTCAGT
65 GACCTGCGGCCATGTCTTTCAACC-AAAGGCTGAATTACCCAAT-GTTTCATCTGGTCATTCAGT
* * * * *
100359548 TGAAGCACGTGCTTACACTGGGCTACC
128 TGAAGCATGTGCATCCACTGGTCTACA
* ** *
100359575 GTTACAAGTCAATGATCTTGATTTTTTCTTGAATCCCCAGAAAAGTAGCACTAGAGATAATGCTG
1 GTCACAAGTCAATGATCCAGATTTTTTCTTGAATCCCCAGAAAAGTAGCGCTAGAGA-AATGCTG
* *
100359640 GACCTGCGGCCATGTCATTCAACCCAAGGTCTGAATTACCCAATGTTTCATCTGGTCATTCAGTT
65 GACCTGCGGCCATGTCTTTCAACCAAAGG-CTGAATTACCCAATGTTTCATCTGGTCATTCAGTT
*
100359705 GAAGCATGTGCATCCACGGGTCTAC
129 GAAGCATGTGCATCCACTGGTCTAC
100359730 TATTGCAGCA
Statistics
Matches: 267, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
155 12 0.04
156 250 0.94
157 5 0.02
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (154 bp):
GTCACAAGTCAATGATCCAGATTTTTTCTTGAATCCCCAGAAAAGTAGCGCTAGAGAAATGCTGG
ACCTGCGGCCATGTCTTTCAACCAAAGGCTGAATTACCCAATGTTTCATCTGGTCATTCAGTTGA
AGCATGTGCATCCACTGGTCTACA
Found at i:100375746 original size:19 final size:19
Alignment explanation
Indices: 100375722--100375762 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
100375712 AAAATTTAAA
*
100375722 AAAAAAATTGAA-AAATATT
1 AAAAAAATTCAACAAAT-TT
100375741 AAAAAAATTCAACAAATTT
1 AAAAAAATTCAACAAATTT
100375760 AAA
1 AAA
100375763 TGCTCATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.24
Consensus pattern (19 bp):
AAAAAAATTCAACAAATTT
Found at i:100380786 original size:4 final size:4
Alignment explanation
Indices: 100380777--100380828 Score: 95
Period size: 4 Copynumber: 13.0 Consensus size: 4
100380767 TCATTAGTTC
*
100380777 CATA CATA CATA CAAA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
100380825 CATA
1 CATA
100380829 AAGTGTTGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 46 1.00
ACGTcount: A:0.52, C:0.25, G:0.00, T:0.23
Consensus pattern (4 bp):
CATA
Found at i:100382165 original size:125 final size:125
Alignment explanation
Indices: 100382010--100382263 Score: 490
Period size: 125 Copynumber: 2.0 Consensus size: 125
100382000 CTTTGGTCCA
100382010 ATAAATAAACTTCTTTGAAATTTTGGGTAAATTGCACTCAAGGTCATTAAACTATTAGTAAATTT
1 ATAAATAAACTTCTTTGAAATTTTGGGTAAATTGCACTCAAGGTCATTAAACTATTAGTAAATTT
100382075 ACATTTTGATCACTTATCTTCAAAAAGTTACATAATGGTCACTATGAAACAACTTTGAAC
66 ACATTTTGATCACTTATCTTCAAAAAGTTACATAATGGTCACTATGAAACAACTTTGAAC
100382135 ATAAATAAACTTCTTTGAAATTTTGGGTAAATTGCACTCAAGGTCATTAAACTATTAGTAAATTT
1 ATAAATAAACTTCTTTGAAATTTTGGGTAAATTGCACTCAAGGTCATTAAACTATTAGTAAATTT
* *
100382200 ACGTTTTGATCACTTATCTTCAAAAAGTTACGTAATGGTCACTATGAAACAACTTTGAAC
66 ACATTTTGATCACTTATCTTCAAAAAGTTACATAATGGTCACTATGAAACAACTTTGAAC
100382260 ATAA
1 ATAA
100382264 GGAATATGCG
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 127 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (125 bp):
ATAAATAAACTTCTTTGAAATTTTGGGTAAATTGCACTCAAGGTCATTAAACTATTAGTAAATTT
ACATTTTGATCACTTATCTTCAAAAAGTTACATAATGGTCACTATGAAACAACTTTGAAC
Found at i:100387459 original size:26 final size:28
Alignment explanation
Indices: 100387431--100387490 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
100387421 TAAATTTTGA
100387431 TTTAA-TAGTGTAATGTTATATATAAAT
1 TTTAATTAGTGTAATGTTATATATAAAT
** *
100387458 TTTAATTTTTGTAATTTTATATATAAAAT
1 TTTAATTAGTGTAATGTTATATAT-AAAT
100387487 TTTA
1 TTTA
100387491 GTTTGATTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 5 0.18
28 15 0.54
29 8 0.29
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (28 bp):
TTTAATTAGTGTAATGTTATATATAAAT
Found at i:100406905 original size:123 final size:123
Alignment explanation
Indices: 100406683--100406909 Score: 303
Period size: 123 Copynumber: 1.8 Consensus size: 123
100406673 TTAGTTTTTC
* * * * * *
100406683 TCTTTAAGCTTCTTTGTGTTTTTTGAGTTTGATAGTTTATTAAAATTTGGTGTATAGTGTCAAAA
1 TCTTTAAGCTTCTTTGTGCTTCTTGAGTTTGATAGTTTATTAAAACTTGCTGTATAATGGCAAAA
* *
100406748 GGCAATCAACTAGCATAGTTTTAGAGTAAATTGCATTGTTTGTTAAAATTGTTCATAT
66 GGCAATCAACCAGCATAGTTCTAGAGTAAATTGCATTGTTTGTTAAAATTGTTCATAT
* *
100406806 TCTTTAAGCTTCTTTGTGCTTCTT-AGTTTGGTAGTTTATTAAAACTTGCTTTATAATGGCAGAA
1 TCTTTAAGCTTCTTTGTGCTTCTTGAGTTTGATAGTTTATTAAAACTTGCTGTATAATGGCA-AA
* * ** *
100406870 CGGTAATCAACCAGTGTAGTTCTAGAGTAATTTGCATTGT
65 AGGCAATCAACCAGCATAGTTCTAGAGTAAATTGCATTGT
100406910 AAGTGGCTAA
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
122 31 0.35
123 57 0.65
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.44
Consensus pattern (123 bp):
TCTTTAAGCTTCTTTGTGCTTCTTGAGTTTGATAGTTTATTAAAACTTGCTGTATAATGGCAAAA
GGCAATCAACCAGCATAGTTCTAGAGTAAATTGCATTGTTTGTTAAAATTGTTCATAT
Found at i:100408193 original size:32 final size:32
Alignment explanation
Indices: 100408148--100408215 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
100408138 TTTGATCCTT
100408148 TAAA-TCATCAGTTTTGTTCTAAAAACAACTA
1 TAAACTCATCAGTTTTGTTCTAAAAACAACTA
100408179 TAAACTCATCAGTTTTGTTCTAAAAACAACTA
1 TAAACTCATCAGTTTTGTTCTAAAAACAACTA
100408211 TAAAC
1 TAAAC
100408216 CTTATTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 4 0.11
32 32 0.89
ACGTcount: A:0.43, C:0.18, G:0.06, T:0.34
Consensus pattern (32 bp):
TAAACTCATCAGTTTTGTTCTAAAAACAACTA
Found at i:100422602 original size:9 final size:9
Alignment explanation
Indices: 100422588--100422612 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
100422578 CAATGCTATT
100422588 AAAATTTTA
1 AAAATTTTA
100422597 AAAATTTTA
1 AAAATTTTA
100422606 AAAATTT
1 AAAATTT
100422613 AAATTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
AAAATTTTA
Found at i:100434238 original size:34 final size:36
Alignment explanation
Indices: 100434184--100434273 Score: 150
Period size: 34 Copynumber: 2.6 Consensus size: 36
100434174 CCCAACTACT
*
100434184 GTATACGTGAACAGTA-CGTATACGTGAATAGTG-C
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
100434218 GTATACGT-AATAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
100434253 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
100434274 AACGGTCGTA
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
33 6 0.12
34 25 0.48
35 9 0.17
36 12 0.23
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:100434249 original size:18 final size:18
Alignment explanation
Indices: 100434184--100434273 Score: 132
Period size: 17 Copynumber: 5.2 Consensus size: 18
100434174 CCCAACTACT
*
100434184 GTATACGTGAACAGTA-C
1 GTATACGTGAATAGTACC
*
100434201 GTATACGTGAATAGT-GC
1 GTATACGTGAATAGTACC
100434218 GTATACGT-AATAGTACC
1 GTATACGTGAATAGTACC
*
100434235 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
100434253 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
100434271 GTA
1 GTA
100434274 AACGGTCGTA
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
16 6 0.09
17 32 0.48
18 28 0.42
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:100438484 original size:50 final size:51
Alignment explanation
Indices: 100438407--100438535 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
100438397 GACCATGGCA
100438407 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
100438458 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
100438508 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
100438536 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:100438549 original size:31 final size:31
Alignment explanation
Indices: 100438511--100438690 Score: 281
Period size: 31 Copynumber: 5.8 Consensus size: 31
100438501 ACAAATGACA
*
100438511 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
100438542 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
100438573 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
* *
100438604 AGTAAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
100438635 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
100438666 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
100438691 AAGTGACAAG
Statistics
Matches: 138, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
30 2 0.01
31 135 0.98
32 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:100438785 original size:47 final size:46
Alignment explanation
Indices: 100438715--100438838 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
100438705 AAGTGATTTC
* * *
100438715 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTAGGATATGGCATCGGTGAGATATATGATA
* * *
100438761 CTGTATAAGACCATATCTAGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTAGGATATGGCATCGGTGAGATATATGATA
* * *
100438808 CGTGTAAGACCATAGCTAGGCTATGGCATCG
1 CGTATAAGACCATATCTAGGATATGGCATCG
100438839 ATATATGAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
46 27 0.40
47 40 0.60
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTAGGATATGGCATCGGTGAGATATATGATA
Found at i:100438872 original size:42 final size:43
Alignment explanation
Indices: 100438809--100438923 Score: 162
Period size: 42 Copynumber: 2.7 Consensus size: 43
100438799 TATGTGATTC
* *
100438809 GTGTAAGACCATAGCTAGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
100438851 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
100438893 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
100438924 GAAAACGAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:100443414 original size:30 final size:31
Alignment explanation
Indices: 100443346--100443415 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 31
100443336 ACCATGATTT
*
100443346 AAGTTTTATGAATATAATTGCACCAAATAAAAA
1 AAGTTTTATGAATATAATTACACCAAAT--AAA
* *
100443379 AAGTTTTATGAGTATAATTACACCAAAT-CA
1 AAGTTTTATGAATATAATTACACCAAATAAA
100443409 AAGTTTT
1 AAGTTTT
100443416 GGTATCAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 8 0.24
33 26 0.76
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (31 bp):
AAGTTTTATGAATATAATTACACCAAATAAA
Found at i:100447736 original size:16 final size:16
Alignment explanation
Indices: 100447715--100447749 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
100447705 ATATGCAGGA
100447715 AACGTGGCAACATGGC
1 AACGTGGCAACATGGC
*
100447731 AACGTGGCAACGTGGC
1 AACGTGGCAACATGGC
100447747 AAC
1 AAC
100447750 ATAATTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.26, G:0.31, T:0.11
Consensus pattern (16 bp):
AACGTGGCAACATGGC
Done.