Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 308 of 311
Found at i:100775099 original size:43 final size:41
Alignment explanation
Indices: 100774975--100775106 Score: 131
Period size: 42 Copynumber: 3.1 Consensus size: 41
100774965 CCATGGTACG
* ** ** *
100774975 AAACAGTTCTATTCCAGCCCAAAATGTCATATCCCTGCTGCC
1 AAACAGTTCTATTCCAGCCCAGAATCCCA-AAACCTGCAGCC
* * *
100775017 AAACAGTTCTATTCCAGCCCAGAATGCCATATCTCTGCAGCC
1 AAACAGTTCTATTCCAGCCCAGAATCCCAAAAC-CTGCAGCC
100775059 AAACAG-TCATATTCCAGCCCTAGAATCCCCAAAACCTGCAGCC
1 AAACAGTTC-TATTCCAGCCC-AGAAT-CCCAAAACCTGCAGCC
100775102 AAACA
1 AAACA
100775107 TCCATTTTCA
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
41 3 0.04
42 51 0.66
43 18 0.23
44 5 0.06
ACGTcount: A:0.33, C:0.34, G:0.12, T:0.21
Consensus pattern (41 bp):
AAACAGTTCTATTCCAGCCCAGAATCCCAAAACCTGCAGCC
Found at i:100776090 original size:118 final size:118
Alignment explanation
Indices: 100775860--100776072 Score: 345
Period size: 118 Copynumber: 1.8 Consensus size: 118
100775850 AGCTTTTCAT
* *
100775860 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCAGAGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCAGAGTAGGGTGCTTGGGTTGTCATT
*
100775925 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCGCATCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
** * * *
100775978 GGTTATGAGTATGGCTCAAATCGTGACTGACTTAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCAGAGTAGGGTGCTTGGGTTGTCATT
*
100776043 CTACTTTGCATCAAAAGGTTGTGTGACGTG
66 CTACTTCGCATCAAAAGGTTGTGTGACGTG
100776073 TTGGGTAAAT
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
118 86 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCAGAGTAGGGTGCTTGGGTTGTCATT
CTACTTCGCATCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
Found at i:100776875 original size:27 final size:26
Alignment explanation
Indices: 100776815--100776876 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
100776805 ATTTTATTTT
100776815 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * *
100776841 ATAATTATTAGGATTATTCAA-ATTTAGG
1 AT-TTTATTAGGATAATT-AATA-TTAAG
100776869 ATTTTATT
1 ATTTTATT
100776877 TTAATTATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 19 0.66
28 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:100779355 original size:44 final size:45
Alignment explanation
Indices: 100779279--100779368 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
100779269 TTTTAATTAT
*
100779279 TTTTTTAATTCTTGTTGTATAGTAATTTGAACCAATCAAGTTGAC
1 TTTTTTAATTCTTGTTGTATAGCAATTTGAACCAATCAAGTTGAC
100779324 TTTTTTAATTCTTGTTGTATAGCAA-TTGAACCAATCAAGTTGAC
1 TTTTTTAATTCTTGTTGTATAGCAATTTGAACCAATCAAGTTGAC
100779368 T
1 T
100779369 GAATTAGAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 20 0.45
45 24 0.55
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (45 bp):
TTTTTTAATTCTTGTTGTATAGCAATTTGAACCAATCAAGTTGAC
Found at i:100779470 original size:14 final size:14
Alignment explanation
Indices: 100779451--100779480 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
100779441 TATATTTCGA
100779451 ACCCTTCTTACTTT
1 ACCCTTCTTACTTT
100779465 ACCCTTCTTACTTT
1 ACCCTTCTTACTTT
100779479 AC
1 AC
100779481 TTTTTATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.47
Consensus pattern (14 bp):
ACCCTTCTTACTTT
Found at i:100781233 original size:16 final size:16
Alignment explanation
Indices: 100781212--100781246 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
100781202 AATCTCATCT
100781212 CTTTGAGTATTTTAGA
1 CTTTGAGTATTTTAGA
100781228 CTTTGAGTATTTTAGA
1 CTTTGAGTATTTTAGA
100781244 CTT
1 CTT
100781247 GAAAGGATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.09, G:0.17, T:0.51
Consensus pattern (16 bp):
CTTTGAGTATTTTAGA
Found at i:100785366 original size:31 final size:31
Alignment explanation
Indices: 100785331--100785434 Score: 86
Period size: 31 Copynumber: 3.2 Consensus size: 31
100785321 TTTATATTTT
100785331 TCAAGTTCAAGGATTAAAATGAATTAACTTG
1 TCAAGTTCAAGGATTAAAATGAATTAACTTG
* * ** * *
100785362 TCAAGTT-TAGG-TGTCAACGTAAATAAAAAAATTTT
1 TCAAGTTCAAGGAT-T--A---AAATGAATTAACTTG
100785397 TCAAGTTCAAGGATTAAAATGAATTAACTTG
1 TCAAGTTCAAGGATTAAAATGAATTAACTTG
100785428 TCAAGTT
1 TCAAGTT
100785435 TAGGTGTCAA
Statistics
Matches: 53, Mismatches: 12, Indels: 16
0.65 0.15 0.20
Matches are distributed among these distances:
29 1 0.02
30 4 0.08
31 24 0.45
32 1 0.02
34 1 0.02
35 17 0.32
36 4 0.08
37 1 0.02
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (31 bp):
TCAAGTTCAAGGATTAAAATGAATTAACTTG
Found at i:100785407 original size:66 final size:66
Alignment explanation
Indices: 100785326--100785458 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
100785316 TACAATTTAT
100785326 ATTTTTCAAGTTCAAGGATTAAAATGAATTAACTTGTCAAGTTTAGGTGTCAACGTAAATAAAAA
1 ATTTTTCAAGTTCAAGGATTAAAATGAATTAACTTGTCAAGTTTAGGTGTCAACGTAAATAAAAA
100785391 A
66 A
100785392 ATTTTTCAAGTTCAAGGATTAAAATGAATTAACTTGTCAAGTTTAGGTGTCAACGTAAATAAAAA
1 ATTTTTCAAGTTCAAGGATTAAAATGAATTAACTTGTCAAGTTTAGGTGTCAACGTAAATAAAAA
100785457 A
66 A
100785458 A
1 A
100785459 ATATATAAGT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (66 bp):
ATTTTTCAAGTTCAAGGATTAAAATGAATTAACTTGTCAAGTTTAGGTGTCAACGTAAATAAAAA
A
Found at i:100791296 original size:23 final size:23
Alignment explanation
Indices: 100791268--100791318 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
100791258 ATTATTCAAC
100791268 TACTTAAAATTTTTTATTTAAGT
1 TACTTAAAATTTTTTATTTAAGT
100791291 TACTTAAAATTTTTTATTTAAGT
1 TACTTAAAATTTTTTATTTAAGT
100791314 TACTT
1 TACTT
100791319 GGCTGTTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (23 bp):
TACTTAAAATTTTTTATTTAAGT
Found at i:100799147 original size:14 final size:14
Alignment explanation
Indices: 100799128--100799165 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
100799118 GTTTGGTAAT
*
100799128 AAAATGTTTTCCGA
1 AAAATGATTTCCGA
*
100799142 AAAATGATTTCTGA
1 AAAATGATTTCCGA
100799156 AAAATGATTT
1 AAAATGATTT
100799166 ACTTTTCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (14 bp):
AAAATGATTTCCGA
Found at i:100799174 original size:20 final size:20
Alignment explanation
Indices: 100799149--100799194 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
100799139 CGAAAAATGA
100799149 TTTCTGAAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
*
100799169 TTTCTG-GAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
100799188 TTTCTGA
1 TTTCTGA
100799195 TGTTTGGATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:100799548 original size:30 final size:30
Alignment explanation
Indices: 100799512--100799571 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
100799502 ATTTTTGGAC
100799512 TAAAGTTCATACCAGACAATAATATACAAA
1 TAAAGTTCATACCAGACAATAATATACAAA
100799542 TAAAGTTCATACCAGACAATAATATACAAA
1 TAAAGTTCATACCAGACAATAATATACAAA
100799572 GGAAAGAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.23
Consensus pattern (30 bp):
TAAAGTTCATACCAGACAATAATATACAAA
Found at i:100809664 original size:176 final size:176
Alignment explanation
Indices: 100809304--100809688 Score: 436
Period size: 176 Copynumber: 2.2 Consensus size: 176
100809294 AAAAGAAAAT
* ** * * *
100809304 GATTCTACAACATTCAAAATATACACAGAGAATTTACTCTAAAGCTCTTGTTACAACTGAATCGC
1 GATTCTACAACATTCAAAATATGCATGGAGAATGTACTCTAAAGCTCTCGTTACAACTGAATCAC
* ** ** *
100809369 GTGAAGTGATAAAAAACTTGATTTTAAGTTTTCAATTGACATCAATCACGAGTTTGATCCCTAAA
66 GTGAAGAGATAAAAAACTACATTTTAAGAATTCAATTGACATCAATCACGAGTTTGACCCCTAAA
* * *
100809434 CAACACCAGCACTTTTCATTTTTCAAAAAAAGAAAATATATATATA
131 CAACACCAACACTTTTCACTTTTCAAAAAAAGAAAATATATAGATA
* * *
100809480 GGTTCTACAACATTCAAAACATGCATGGAGAATGTACTCTAAAGCTCTCGTTACGACTGAATCAC
1 GATTCTACAACATTCAAAATATGCATGGAGAATGTACTCTAAAGCTCTCGTTACAACTGAATCAC
** * * * *
100809545 GGTGAAGAGATAAAGGAC-ACATTTTCTAGAATTCAGTTGACCTCAATCCCGAGTTTGACCCCTA
66 -GTGAAGAGATAAAAAACTACATTTT-AAGAATTCAATTGACATCAATCACGAGTTTGACCCCTA
* * * * *
100809609 AACAAC-CCTTAAC-CTTTTCCCTTTTC-AAAATAGGATATATGTAGATA
129 AACAACACC--AACACTTTTCACTTTTCAAAAAAAGAAAATATATAGATA
*
100809656 GATTCTACAACAATCAAAATATGCATGGAGAAT
1 GATTCTACAACATTCAAAATATGCATGGAGAAT
100809689 CAGAGTGAAG
Statistics
Matches: 173, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
176 109 0.63
177 62 0.36
178 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (176 bp):
GATTCTACAACATTCAAAATATGCATGGAGAATGTACTCTAAAGCTCTCGTTACAACTGAATCAC
GTGAAGAGATAAAAAACTACATTTTAAGAATTCAATTGACATCAATCACGAGTTTGACCCCTAAA
CAACACCAACACTTTTCACTTTTCAAAAAAAGAAAATATATAGATA
Found at i:100811971 original size:22 final size:22
Alignment explanation
Indices: 100811941--100811984 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
100811931 ATCCAATCGA
*
100811941 ATTTTATTTTTATTTA-ATTTC
1 ATTTTATTTATATTTATATTTC
100811962 ATTTATATTTATATTTATATTTC
1 ATTT-TATTTATATTTATATTTC
100811985 GTAATTACGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 11 0.55
23 5 0.25
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (22 bp):
ATTTTATTTATATTTATATTTC
Found at i:100813401 original size:26 final size:26
Alignment explanation
Indices: 100813347--100813403 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
100813337 AATTTTATTT
*
100813347 TATTTTTAAATATATTTAAAATATTA
1 TATTTTTAAATATATTTAAAATATAA
*
100813373 TATTTTTCAATAT-TATTAAACATA-AA
1 TATTTTTAAATATAT-TTAAA-ATATAA
100813399 TATTT
1 TATTT
100813404 AATTATTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 1 0.04
26 23 0.85
27 3 0.11
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (26 bp):
TATTTTTAAATATATTTAAAATATAA
Found at i:100813466 original size:22 final size:20
Alignment explanation
Indices: 100813425--100813482 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
100813415 TATAGTCATA
100813425 TAATAAATTATT-AATA---
1 TAATAAATTATTGAATATTT
100813441 TAATAAATATAATTGAATATTT
1 TAATAAAT-T-ATTGAATATTT
*
100813463 TAATAAATTATTTAATATTT
1 TAATAAATTATTGAATATTT
100813483 CAATTTTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
16 8 0.23
17 1 0.03
18 3 0.09
19 4 0.11
20 10 0.29
21 1 0.03
22 8 0.23
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TAATAAATTATTGAATATTT
Found at i:100819544 original size:24 final size:26
Alignment explanation
Indices: 100819515--100819567 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
100819505 AACAACTCTA
100819515 TTATTTATTA-TA-TTTTTAAAATAT
1 TTATTTATTATTATTTTTTAAAATAT
*
100819539 TTATTTATTATTATTTTTTAAAGTAT
1 TTATTTATTATTATTTTTTAAAATAT
100819565 TTA
1 TTA
100819568 CACAATTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 10 0.38
25 2 0.08
26 14 0.54
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (26 bp):
TTATTTATTATTATTTTTTAAAATAT
Found at i:100819575 original size:27 final size:27
Alignment explanation
Indices: 100819519--100819576 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
100819509 ACTCTATTAT
***
100819519 TTATTATATTTTTAAAATATTTATTTA
1 TTATTATATTTTTAAAATATTTAACAA
*
100819546 TTATTAT-TTTTTAAAGTATTTACACAA
1 TTATTATATTTTTAAAATATTTA-ACAA
100819573 TTAT
1 TTAT
100819577 CGAGCTTCTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (27 bp):
TTATTATATTTTTAAAATATTTAACAA
Found at i:100820640 original size:13 final size:14
Alignment explanation
Indices: 100820618--100820653 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
100820608 TTGATCAGAC
*
100820618 TAAATAAAATTAA-
1 TAAATTAAATTAAT
100820631 TAAATTAAATTAAT
1 TAAATTAAATTAAT
100820645 TAAATTAAA
1 TAAATTAAA
100820654 CTCACACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TAAATTAAATTAAT
Found at i:100820932 original size:31 final size:32
Alignment explanation
Indices: 100820897--100820972 Score: 95
Period size: 29 Copynumber: 2.5 Consensus size: 32
100820887 AATTATATAC
* *
100820897 AAATTTTAATTTAATGTGTAATTTTATACAT-
1 AAATTTTAATTTAATGTATAAATTTATACATA
*
100820928 AAATTTTGATTT--TGTATAAATTTATACATA
1 AAATTTTAATTTAATGTATAAATTTATACATA
*
100820958 AAAATTTAATTTAAT
1 AAATTTTAATTTAAT
100820973 CAAATTTTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
29 15 0.41
30 10 0.27
31 11 0.30
32 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (32 bp):
AAATTTTAATTTAATGTATAAATTTATACATA
Found at i:100821148 original size:3 final size:3
Alignment explanation
Indices: 100821140--100821177 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
100821130 CTTTATTACT
100821140 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
100821178 TTTCATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:100823333 original size:29 final size:30
Alignment explanation
Indices: 100823269--100823344 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 30
100823259 GTTAACATTT
*
100823269 GGACTTAAATTTTGAAATATGAAAAGTAGAA
1 GGAC-TAAATTTTGAAATATGAAAAGTACAA
* *
100823300 TGACTAAATTTCTGAAA-AT-TAAAGTACAA
1 GGACTAAATTT-TGAAATATGAAAAGTACAA
100823329 GGACTAAATTTT-AAAT
1 GGACTAAATTTTGAAAT
100823345 TTTCAAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
27 3 0.08
28 1 0.03
29 18 0.46
30 9 0.23
31 8 0.21
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (30 bp):
GGACTAAATTTTGAAATATGAAAAGTACAA
Found at i:100840382 original size:20 final size:21
Alignment explanation
Indices: 100840344--100840385 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
100840334 TGATGCTTTC
* *
100840344 TTTCTTTATTCTTTGTTTTTT
1 TTTCTTTATCCTTTATTTTTT
100840365 TTTCTTTA-CCTTTATTTTTT
1 TTTCTTTATCCTTTATTTTTT
100840385 T
1 T
100840386 GCCTAGCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.07, C:0.12, G:0.02, T:0.79
Consensus pattern (21 bp):
TTTCTTTATCCTTTATTTTTT
Found at i:100852041 original size:13 final size:13
Alignment explanation
Indices: 100852023--100852049 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
100852013 GTTTATTGCC
100852023 TTACAAGAGAGCA
1 TTACAAGAGAGCA
100852036 TTACAAGAGAGCA
1 TTACAAGAGAGCA
100852049 T
1 T
100852050 GCCTAGGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (13 bp):
TTACAAGAGAGCA
Found at i:100854426 original size:18 final size:18
Alignment explanation
Indices: 100854403--100854438 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
100854393 AGGAATATTT
100854403 GCGTAATAGTTTGGTGGC
1 GCGTAATAGTTTGGTGGC
100854421 GCGTAATAGTTTGGTGGC
1 GCGTAATAGTTTGGTGGC
100854439 CGAAGGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.39, T:0.33
Consensus pattern (18 bp):
GCGTAATAGTTTGGTGGC
Found at i:100854742 original size:3 final size:3
Alignment explanation
Indices: 100854734--100854762 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
100854724 TCCTCCATTA
100854734 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
100854763 CTGTATTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:100855329 original size:15 final size:15
Alignment explanation
Indices: 100855303--100855342 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
100855293 TTAGATATAA
* *
100855303 TTATTATTTAAATAT
1 TTATTATATAAATAG
*
100855318 TTTTTATATAAATAG
1 TTATTATATAAATAG
100855333 TTATTATATA
1 TTATTATATA
100855343 CTGATTTATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
TTATTATATAAATAG
Found at i:100856524 original size:3 final size:3
Alignment explanation
Indices: 100856516--100856547 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
100856506 CATATTTACC
100856516 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
100856548 TGTGTAGGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:100857595 original size:19 final size:19
Alignment explanation
Indices: 100857570--100857847 Score: 92
Period size: 19 Copynumber: 14.5 Consensus size: 19
100857560 CCAATATTTT
100857570 TTATAAAAATTATAAAAAA
1 TTATAAAAATTATAAAAAA
* *
100857589 ATATAAAAGATCA-AAAAAGA
1 TTATAAAA-ATTATAAAAA-A
100857609 TTTATAAAAA-T-T-AAAAA
1 -TTATAAAAATTATAAAAAA
* *
100857626 TTATTAAAATTAATATAAAA
1 TTATAAAAATT-ATAAAAAA
* * *
100857646 TTTTTAAAATTATAAAAAC
1 TTATAAAAATTATAAAAAA
*
100857665 TTATAAATATTAT--AAAA
1 TTATAAAAATTATAAAAAA
* * *
100857682 CTAT-ATAATATATAATAAA
1 TTATAAAAAT-TATAAAAAA
* *
100857701 TTCTAATAAATTACAAAAAAA
1 TTATAA-AAATTA-TAAAAAA
* *
100857722 TTAT-AAAATTAATAAGAAC
1 TTATAAAAATT-ATAAAAAA
* * *
100857741 TTGTTTAAAATTAAAAAAAAA
1 TT-ATAAAAATT-ATAAAAAA
* * * * * *
100857762 CATATTAGAATTCTTAAAAT
1 -TTATAAAAATTATAAAAAA
100857782 TTATAAATAATTAT-AAAAA
1 TTATAAA-AATTATAAAAAA
* ** *
100857801 -TATTAAAATTGATATTAAC
1 TTATAAAAATT-ATAAAAAA
100857820 TTATAAAAGA-TATAAAAAA
1 TTATAAAA-ATTATAAAAAA
*
100857839 TCATAAAAA
1 TTATAAAAA
100857848 AAAAACTTAA
Statistics
Matches: 185, Mismatches: 51, Indels: 47
0.65 0.18 0.17
Matches are distributed among these distances:
16 11 0.06
17 15 0.08
18 12 0.06
19 67 0.36
20 41 0.22
21 38 0.21
22 1 0.01
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.34
Consensus pattern (19 bp):
TTATAAAAATTATAAAAAA
Found at i:100857633 original size:10 final size:9
Alignment explanation
Indices: 100857570--100857729 Score: 85
Period size: 10 Copynumber: 16.9 Consensus size: 9
100857560 CCAATATTTT
100857570 TTATAAAAA
1 TTATAAAAA
100857579 TTATAAAAAA
1 TTAT-AAAAA
*
100857589 ATATAAAAGA
1 TTATAAAA-A
* *
100857599 TCAAAAAAGA
1 TTATAAAA-A
100857609 TTTATAAAAA
1 -TTATAAAAA
100857619 -T-TAAAAA
1 TTATAAAAA
*
100857626 TTATTAAAA
1 TTATAAAAA
100857635 TTAATATAAAA
1 TT-ATA-AAAA
* *
100857646 TTTTTAAAA
1 TTATAAAAA
100857655 TTATAAAAA
1 TTATAAAAA
*
100857664 CTTATAAATA
1 -TTATAAAAA
100857674 TTAT-AAAA
1 TTATAAAAA
* *
100857682 CTAT-ATAA
1 TTATAAAAA
100857690 TATATAATAAA
1 T-TATAA-AAA
*
100857701 TTCTAATAAA
1 TTATAA-AAA
*
100857711 TTACAAAAAAA
1 TT--ATAAAAA
100857722 TTATAAAA
1 TTATAAAA
100857730 TTAATAAGAA
Statistics
Matches: 116, Mismatches: 22, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
7 6 0.05
8 11 0.09
9 38 0.33
10 39 0.34
11 20 0.17
12 2 0.02
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:100857646 original size:11 final size:9
Alignment explanation
Indices: 100857610--100857681 Score: 53
Period size: 9 Copynumber: 8.0 Consensus size: 9
100857600 CAAAAAAGAT
*
100857610 TTATAAAAA
1 TTATTAAAA
100857619 TTA--AAAA
1 TTATTAAAA
100857626 TTATTAAAA
1 TTATTAAAA
100857635 TTAATATAAAA
1 TT-AT-TAAAA
*
100857646 TTTTTAAAA
1 TTATTAAAA
*
100857655 TTATAAAAA
1 TTATTAAAA
100857664 CTTA-TAAATA
1 -TTATTAAA-A
100857674 TTA-TAAAA
1 TTATTAAAA
100857682 CTATATAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 13
0.76 0.06 0.19
Matches are distributed among these distances:
7 7 0.13
8 1 0.02
9 31 0.58
10 7 0.13
11 7 0.13
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (9 bp):
TTATTAAAA
Found at i:100857686 original size:17 final size:18
Alignment explanation
Indices: 100857639--100857700 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
100857629 TTAAAATTAA
* *
100857639 TATAAAATTTTTAAA-AT
1 TATAAAACTTATAAATAT
100857656 TATAAAAACTTATAAATAT
1 TAT-AAAACTTATAAATAT
100857675 TATAAAACTATATAATATAT
1 TATAAAACT-TATAA-ATAT
*
100857695 AATAAA
1 TATAAA
100857701 TTCTAATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
17 3 0.08
18 16 0.42
19 10 0.26
20 9 0.24
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TATAAAACTTATAAATAT
Found at i:100857810 original size:28 final size:29
Alignment explanation
Indices: 100857775--100857837 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
100857765 ATTAGAATTC
*
100857775 TTAAAATTTATAAATAA-TTATAAAA-ATA
1 TTAAAATTGAT-AATAACTTATAAAAGATA
*
100857803 TTAAAATTGATATTAACTTATAAAAGATA
1 TTAAAATTGATAATAACTTATAAAAGATA
*
100857832 TAAAAA
1 TTAAAA
100857838 ATCATAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 4 0.13
28 18 0.60
29 8 0.27
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.37
Consensus pattern (29 bp):
TTAAAATTGATAATAACTTATAAAAGATA
Found at i:100859487 original size:21 final size:22
Alignment explanation
Indices: 100859463--100859505 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
100859453 TTTTATAAAT
*
100859463 TTTATAGAACTTT-AATATGTA
1 TTTATAAAACTTTAAATATGTA
*
100859484 TTTATAAAATTTTAAATATGTA
1 TTTATAAAACTTTAAATATGTA
100859506 CTATTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (22 bp):
TTTATAAAACTTTAAATATGTA
Found at i:100863837 original size:10 final size:11
Alignment explanation
Indices: 100863801--100863839 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
100863791 AATTTGTAAT
100863801 TTTTTAAAATA
1 TTTTTAAAATA
*
100863812 TTTTTACATATA
1 TTTTTA-AAATA
100863824 TTTTTAAAAT-
1 TTTTTAAAATA
100863834 TTTTTA
1 TTTTTA
100863840 TTTAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 6 0.24
11 9 0.36
12 10 0.40
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTTAAAATA
Found at i:100865156 original size:2 final size:2
Alignment explanation
Indices: 100865149--100865173 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
100865139 TTTTCAAAGC
100865149 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
100865174 AATTCAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:100873313 original size:27 final size:26
Alignment explanation
Indices: 100873261--100873313 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
100873251 TGAAGTATAA
* * * *
100873261 TTTTTTATTTTATACTTAAACATTTT
1 TTTTTTAATTTAGACCTAAAAATTTT
*
100873287 TTTTTTAATTTAGACCTAAAAAGTTT
1 TTTTTTAATTTAGACCTAAAAATTTT
100873313 T
1 T
100873314 AATTACATCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (26 bp):
TTTTTTAATTTAGACCTAAAAATTTT
Found at i:100874364 original size:18 final size:18
Alignment explanation
Indices: 100874343--100874378 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
100874333 TATTTTTAAT
*
100874343 TAAATATAATTAAAAATA
1 TAAATATAATAAAAAATA
*
100874361 TAAATATTATAAAAAATA
1 TAAATATAATAAAAAATA
100874379 ATATTTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAATATAATAAAAAATA
Found at i:100874381 original size:15 final size:17
Alignment explanation
Indices: 100874343--100874383 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
100874333 TATTTTTAAT
*
100874343 TAAATATAATTAAAAATA
1 TAAATATTA-TAAAAATA
100874361 TAAATATTATAAAAA-A
1 TAAATATTATAAAAATA
100874377 T-AATATT
1 TAAATATT
100874384 TTGATATTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 6 0.27
16 2 0.09
17 6 0.27
18 8 0.36
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAATATTATAAAAATA
Found at i:100878465 original size:28 final size:29
Alignment explanation
Indices: 100878416--100878470 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
100878406 AACTATACCC
*
100878416 ATTATTTTAAATTAGTACCTAAACTTTAA
1 ATTATTTTAAATTAATACCTAAACTTTAA
100878445 ATTATTTT-AATTACAT-CCTAAACTTT
1 ATTATTTTAAATTA-ATACCTAAACTTT
100878471 CGAAGTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (29 bp):
ATTATTTTAAATTAATACCTAAACTTTAA
Found at i:100883912 original size:68 final size:70
Alignment explanation
Indices: 100883800--100883930 Score: 221
Period size: 68 Copynumber: 1.9 Consensus size: 70
100883790 AAAGGAGACA
*
100883800 TTGGTTGACCGTTTTCACTACATTCCTTTCCCGTTTTCTCTTTGGGTTAATTTT-T-TTTTTTAT
1 TTGGTTGACCGTTTTCACTACATTCCTTTCCCGTTTTATCTTTGGGTTAATTTTATCTTTTTTAT
100883863 TAAAT
66 TAAAT
* *
100883868 TTGGTTGACCGTTTTCACTACATTCCTTTCCCTTTTTATTTTTGGGTTAATTTTATCTTTTTT
1 TTGGTTGACCGTTTTCACTACATTCCTTTCCCGTTTTATCTTTGGGTTAATTTTATCTTTTTT
100883931 TATTTGATTA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
68 51 0.88
69 1 0.02
70 6 0.10
ACGTcount: A:0.14, C:0.18, G:0.11, T:0.57
Consensus pattern (70 bp):
TTGGTTGACCGTTTTCACTACATTCCTTTCCCGTTTTATCTTTGGGTTAATTTTATCTTTTTTAT
TAAAT
Found at i:100885191 original size:22 final size:24
Alignment explanation
Indices: 100885166--100885213 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
100885156 ACCGCAGTTG
100885166 ATAAAATAACAAAT-TCAAA-ATA
1 ATAAAATAACAAATGTCAAAGATA
* *
100885188 ATAAATTAATAAATGTCAAAGATA
1 ATAAAATAACAAATGTCAAAGATA
100885212 AT
1 AT
100885214 CTGATCAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 12 0.55
23 5 0.23
24 5 0.23
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.27
Consensus pattern (24 bp):
ATAAAATAACAAATGTCAAAGATA
Found at i:100885276 original size:96 final size:91
Alignment explanation
Indices: 100885117--100885297 Score: 308
Period size: 96 Copynumber: 1.9 Consensus size: 91
100885107 CAATCATGTT
100885117 GATAATCTGATCAAGAGATGGAACTGACCGGTGGGTGAAACCGCAGTTGATAAAATAACAAATTC
1 GATAATCTGATCAAGAGATGGAACTGACCGGTGGGTGAAACCGCAGTTGATAAAATAACAAATTC
100885182 AAAATAATAAATTAATAAATGTCAAA
66 AAAATAATAAATTAATAAATGTCAAA
*
100885208 GATAATCTGATCAAGACGACAAGTGGTACTGACCGGTGGGTGAAACCGCAGTTGATAAAATAACA
1 GATAATCTGATCAAGA-G---A-TGGAACTGACCGGTGGGTGAAACCGCAGTTGATAAAATAACA
100885273 AATTCAAAATAATAAATTAATAAAT
61 AATTCAAAATAATAAATTAATAAAT
100885298 ATAAGAGGTT
Statistics
Matches: 84, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
91 16 0.19
92 1 0.01
95 1 0.01
96 66 0.79
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (91 bp):
GATAATCTGATCAAGAGATGGAACTGACCGGTGGGTGAAACCGCAGTTGATAAAATAACAAATTC
AAAATAATAAATTAATAAATGTCAAA
Found at i:100896241 original size:16 final size:18
Alignment explanation
Indices: 100896215--100896256 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
100896205 AAAAGCCTTG
100896215 AAATGATAAAAAA-ATT-T
1 AAAT-ATAAAAAATATTAT
100896232 AAATATAAAAAATATTAT
1 AAATATAAAAAATATTAT
100896250 AAA-ATAA
1 AAATATAA
100896257 TATTAAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 11 0.48
18 4 0.17
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
AAATATAAAAAATATTAT
Found at i:100896259 original size:22 final size:23
Alignment explanation
Indices: 100896233--100896276 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
100896223 AAAAAATTTA
*
100896233 AATA-TAAA-AAATATTATAAAAT
1 AATATTAAACAAAT-TTAAAAAAT
100896255 AATATTAAACAAATTTAAAAAA
1 AATATTAAACAAATTTAAAAAA
100896277 GGTATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
AATATTAAACAAATTTAAAAAAT
Found at i:100898159 original size:8 final size:8
Alignment explanation
Indices: 100898146--100898192 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
100898136 TGATTATTAA
*
100898146 TTTAAATT
1 TTTAAAAT
100898154 TTTAAAAT
1 TTTAAAAT
100898162 TTTAAAAT
1 TTTAAAAT
*
100898170 TATAAAAT
1 TTTAAAAT
* *
100898178 ATTAAAAA
1 TTTAAAAT
100898186 TTTAAAA
1 TTTAAAA
100898193 AATAAGAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
TTTAAAAT
Found at i:100898167 original size:16 final size:16
Alignment explanation
Indices: 100898146--100898217 Score: 54
Period size: 16 Copynumber: 4.4 Consensus size: 16
100898136 TGATTATTAA
* *
100898146 TTTAAATTTTTAAAAT
1 TTTAAAATTATAAAAT
100898162 TTTAAAATTATAAAAT
1 TTTAAAATTATAAAAT
* *
100898178 ATTAAAAATTTAAAAAAT
1 -TTTAAAA-TTATAAAAT
***
100898196 AAGAAAATTATAAAAT
1 TTTAAAATTATAAAAT
*
100898212 TATAAA
1 TTTAAA
100898218 GAAAAAACAA
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
16 26 0.59
17 10 0.23
18 8 0.18
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (16 bp):
TTTAAAATTATAAAAT
Found at i:100898209 original size:18 final size:17
Alignment explanation
Indices: 100898165--100898210 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
100898155 TTAAAATTTT
* *
100898165 AAAATTATAAAATATTA
1 AAAATTATAAAAAATAA
100898182 AAAATT-TAAAAAATAA
1 AAAATTATAAAAAATAA
100898198 GAAAATTATAAAA
1 -AAAATTATAAAA
100898211 TTATAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 8 0.32
17 12 0.48
18 5 0.20
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (17 bp):
AAAATTATAAAAAATAA
Found at i:100898210 original size:8 final size:8
Alignment explanation
Indices: 100898156--100898217 Score: 54
Period size: 8 Copynumber: 7.5 Consensus size: 8
100898146 TTTAAATTTT
*
100898156 TAAAATTT
1 TAAAATTA
100898164 TAAAATTA
1 TAAAATTA
100898172 TAAAA-TA
1 TAAAATTA
100898179 TTAAAAATTTA
1 -T-AAAA-TTA
* *
100898190 AAAAATAA
1 TAAAATTA
*
100898198 GAAAATTA
1 TAAAATTA
100898206 TAAAATTA
1 TAAAATTA
100898214 TAAA
1 TAAA
100898218 GAAAAAACAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
7 2 0.05
8 32 0.73
9 8 0.18
11 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (8 bp):
TAAAATTA
Found at i:100907170 original size:19 final size:19
Alignment explanation
Indices: 100907100--100907172 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 19
100907090 TTCATAATAA
*
100907100 TTGATATACTCTTATAATGT
1 TTGATATACTTTTATAAT-T
* * * *
100907120 TTGATCTTCCTTCATAATT
1 TTGATATACTTTTATAATT
*
100907139 TTCGATACACTTTTATAATT
1 TT-GATATACTTTTATAATT
*
100907159 TTGATATTCTTTTA
1 TTGATATACTTTTA
100907173 AAAATTAAAA
Statistics
Matches: 40, Mismatches: 12, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
19 13 0.32
20 27 0.68
ACGTcount: A:0.26, C:0.14, G:0.07, T:0.53
Consensus pattern (19 bp):
TTGATATACTTTTATAATT
Found at i:100908216 original size:14 final size:14
Alignment explanation
Indices: 100908197--100908226 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
100908187 TTATATCGAG
100908197 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
100908211 ACCAATCCAATTCA
1 ACCAATCCAAATCA
100908225 AC
1 AC
100908227 ATATTTTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:100916217 original size:20 final size:20
Alignment explanation
Indices: 100916192--100916260 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
100916182 AAATATTTAG
100916192 CATAATTTTTTG-TATTTCTT
1 CATAA-TTTTTGATATTTCTT
**
100916212 CATAATAATTGATATATT-TT
1 CATAATTTTTGATAT-TTCTT
* *
100916232 TATAATGTTTGATATTTCTT
1 CATAATTTTTGATATTTCTT
100916252 CATAATTTT
1 CATAATTTT
100916261 CGGTACACTT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
19 6 0.15
20 31 0.79
21 2 0.05
ACGTcount: A:0.29, C:0.07, G:0.06, T:0.58
Consensus pattern (20 bp):
CATAATTTTTGATATTTCTT
Found at i:100917585 original size:21 final size:21
Alignment explanation
Indices: 100917559--100917605 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
100917549 AAATATATAA
*
100917559 ATTTAGTTTTATAAAGATTTC
1 ATTTAGATTTATAAAGATTTC
** *
100917580 ATTTAGATTTATTCAGATTTT
1 ATTTAGATTTATAAAGATTTC
100917601 ATTTA
1 ATTTA
100917606 CTAAAGAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.55
Consensus pattern (21 bp):
ATTTAGATTTATAAAGATTTC
Found at i:100922484 original size:76 final size:75
Alignment explanation
Indices: 100922386--100922534 Score: 237
Period size: 76 Copynumber: 2.0 Consensus size: 75
100922376 TGGTTTTGCA
* *
100922386 CACATTTTTATCATGGCTTTGCCATTATCACAT-ACTTTATCACATTGCCATAGCTTAACTATGG
1 CACATTTTTATCATGGCCTTGCCATGATCACATGA-TTTATCACATTGCCATAGCTTAACTATGG
*
100922450 TCTTGCACTTG
65 TCTTACACTTG
*
100922461 CACATATTTTATCATGGCCTTGCCATGATCACATGATTTATCACATTGCCATAGCTTAGCTATGG
1 CACAT-TTTTATCATGGCCTTGCCATGATCACATGATTTATCACATTGCCATAGCTTAACTATGG
100922526 TCTTACACT
65 TCTTACACT
100922535 GGCAAAAAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
75 5 0.07
76 62 0.91
77 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (75 bp):
CACATTTTTATCATGGCCTTGCCATGATCACATGATTTATCACATTGCCATAGCTTAACTATGGT
CTTACACTTG
Found at i:100926252 original size:18 final size:18
Alignment explanation
Indices: 100926226--100926281 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
100926216 GAATTAATAG
*
100926226 AATTAAATTAATTAAATT
1 AATTCAATTAATTAAATT
* *
100926244 ATTTCAATTCGA-TAAATT
1 AATTCAATT-AATTAAATT
100926262 AATTCAATTTTAATTAAATT
1 AATTCAA--TTAATTAAATT
100926282 TTGCTTAACT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 19 0.66
19 2 0.07
20 8 0.28
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (18 bp):
AATTCAATTAATTAAATT
Found at i:100927725 original size:15 final size:17
Alignment explanation
Indices: 100927687--100927731 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 17
100927677 TCAAATCGAG
100927687 TTGAGTGAAA-TGAAAT
1 TTGAGTGAAATTGAAAT
100927703 TCTGAGTGAAATTG-AA-
1 T-TGAGTGAAATTGAAAT
100927719 TTGAGTGAAATTG
1 TTGAGTGAAATTG
100927732 TTCAAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 12 0.44
16 2 0.07
17 11 0.41
18 2 0.07
ACGTcount: A:0.38, C:0.02, G:0.27, T:0.33
Consensus pattern (17 bp):
TTGAGTGAAATTGAAAT
Found at i:100927832 original size:10 final size:10
Alignment explanation
Indices: 100927819--100927856 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
100927809 ATTCTTTTAA
100927819 ATATTTTTTT
1 ATATTTTTTT
100927829 ATATTTTCTTT
1 ATATTTT-TTT
*
100927840 AGATTTTTTT
1 ATATTTTTTT
100927850 ATATTTT
1 ATATTTT
100927857 CTATTTTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (10 bp):
ATATTTTTTT
Found at i:100929792 original size:20 final size:20
Alignment explanation
Indices: 100929759--100929797 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
100929749 AAAAATTATG
100929759 AATTTTTTGAATTTTTTTTA
1 AATTTTTTGAATTTTTTTTA
100929779 AATTATTTTG-ATTTTTTTT
1 AATT-TTTTGAATTTTTTTT
100929798 GTTGGATGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (20 bp):
AATTTTTTGAATTTTTTTTA
Found at i:100935089 original size:28 final size:29
Alignment explanation
Indices: 100935031--100935104 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
100935021 TTAATGACTA
100935031 AATTAAGATTTCTAAATTGAAAAGTAAAAT
1 AATTAA-ATTTCTAAATTGAAAAGTAAAAT
* * * *
100935061 AATTAAATTTTTAATTTTAAAA-TATAAT
1 AATTAAATTTCTAAATTGAAAAGTAAAAT
*
100935089 AATTAAATCTC-AAATT
1 AATTAAATTTCTAAATT
100935105 TTATAAAAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
27 4 0.11
28 14 0.38
29 13 0.35
30 6 0.16
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (29 bp):
AATTAAATTTCTAAATTGAAAAGTAAAAT
Found at i:100942525 original size:46 final size:46
Alignment explanation
Indices: 100942475--100942647 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
100942465 TGGTTGAGCA
*
100942475 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
100942521 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
100942566 CATCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* **
100942614 CCCGAGGTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
100942648 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.55
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:100942631 original size:93 final size:93
Alignment explanation
Indices: 100942472--100942642 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
100942462 GGATGGTTGA
* *
100942472 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
100942537 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * **
100942565 GCATCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGGTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
100942630 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
100942643 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:100943748 original size:18 final size:19
Alignment explanation
Indices: 100943725--100943767 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
100943715 ATTTTTATTT
100943725 ATATATTATAAAT-ATTAA
1 ATATATTATAAATAATTAA
*
100943743 ATATATTTTAAATAATTAA
1 ATATATTATAAATAATTAA
*
100943762 AAATAT
1 ATATAT
100943768 ATTAAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATATATTATAAATAATTAA
Found at i:100943762 original size:19 final size:18
Alignment explanation
Indices: 100943725--100943774 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
100943715 ATTTTTATTT
*
100943725 ATATATTATAAATATTAA
1 ATATATTTTAAATATTAA
100943743 ATATATTTTAAATAATTAA
1 ATATATTTTAAAT-ATTAA
* *
100943762 AAATATATTAAAT
1 ATATATTTTAAAT
100943775 TAAGTCAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 12 0.43
19 16 0.57
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATATTTTAAATATTAA
Found at i:100943954 original size:29 final size:29
Alignment explanation
Indices: 100943912--100943975 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
100943902 ACTTACAATT
*
100943912 ACTTTTGTTTATAAATTTTATAATACAAA
1 ACTTATGTTTATAAATTTTATAATACAAA
* *
100943941 A-TTATGTTGTATAAATTTTTTTATACAAA
1 ACTTATGTT-TATAAATTTTATAATACAAA
100943970 ACTTAT
1 ACTTAT
100943976 ATCTACTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 6 0.20
29 20 0.67
30 4 0.13
ACGTcount: A:0.39, C:0.06, G:0.05, T:0.50
Consensus pattern (29 bp):
ACTTATGTTTATAAATTTTATAATACAAA
Found at i:100950040 original size:14 final size:15
Alignment explanation
Indices: 100950017--100950045 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
100950007 GGGTTTAGAT
100950017 AAAAATATAGGCTTG
1 AAAAATATAGGCTTG
100950032 AAAAA-ATAGGCTTG
1 AAAAATATAGGCTTG
100950046 GACAAGAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (15 bp):
AAAAATATAGGCTTG
Found at i:100950299 original size:17 final size:18
Alignment explanation
Indices: 100950266--100950299 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
100950256 TAAATTGCAC
*
100950266 TTATTTTAGTGTTATTTT
1 TTATTTTAGTCTTATTTT
100950284 TTATTTT-GTCTTATTT
1 TTATTTTAGTCTTATTT
100950300 GTTGGGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.03, G:0.09, T:0.74
Consensus pattern (18 bp):
TTATTTTAGTCTTATTTT
Found at i:100950915 original size:42 final size:42
Alignment explanation
Indices: 100950856--100950940 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
100950846 CTTTATAACA
100950856 ATCATATATAAACGTAAAATTGTAATTTCATACAATGTGATG
1 ATCATATATAAACGTAAAATTGTAATTTCATACAATGTGATG
100950898 ATCATATATAAACGTAAAATTGTAATTTCATACAATGTGATG
1 ATCATATATAAACGTAAAATTGTAATTTCATACAATGTGATG
100950940 A
1 A
100950941 GGTGAGATGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (42 bp):
ATCATATATAAACGTAAAATTGTAATTTCATACAATGTGATG
Found at i:100957064 original size:23 final size:21
Alignment explanation
Indices: 100957013--100957075 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
100957003 TATAAAATAA
* * *
100957013 TTATTAAACTATTCAATAATTT
1 TTATTAAATTATTAAAT-TTTT
100957035 TTATTAAATTATTTAAATTTTT
1 TTATTAAATTA-TTAAATTTTT
100957057 TTATTTAAATTATTAAATT
1 TTA-TTAAATTATTAAATT
100957076 ATTAATTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 23 0.64
23 13 0.36
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
TTATTAAATTATTAAATTTTT
Found at i:100968681 original size:31 final size:31
Alignment explanation
Indices: 100968645--100968705 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
100968635 TTATTCAAAC
* *
100968645 TCAAAAAAATC-AATTATTTATTCGAGTTGAT
1 TCAAAAAAATCGAATAACTTATTCGA-TTGAT
100968676 TCAAAAAAATCGAATAACTTATTCGATTGA
1 TCAAAAAAATCGAATAACTTATTCGATTGA
100968706 ATTAATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.34
Consensus pattern (31 bp):
TCAAAAAAATCGAATAACTTATTCGATTGAT
Found at i:100979794 original size:54 final size:54
Alignment explanation
Indices: 100979727--100979833 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
100979717 TCATCGATGA
100979727 TTTTAAATGAAAATCCTAGGAAAATCCCTAAAATTCGATAATAAAAATATTAAC
1 TTTTAAATGAAAATCCTAGGAAAATCCCTAAAATTCGATAATAAAAATATTAAC
*
100979781 TTTTAAATGAAAATCCTATGAAAATCCCTAAAATTCGATAATAAAAATATTAA
1 TTTTAAATGAAAATCCTAGGAAAATCCCTAAAATTCGATAATAAAAATATTAA
100979834 TGGGTCAAGC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.31
Consensus pattern (54 bp):
TTTTAAATGAAAATCCTAGGAAAATCCCTAAAATTCGATAATAAAAATATTAAC
Found at i:100981420 original size:18 final size:19
Alignment explanation
Indices: 100981394--100981434 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
100981384 GTTTGTAAAA
*
100981394 TAATTTTAAATT-TTTA-T
1 TAATTTTTAATTGTTTATT
100981411 TAATTTTTAATTGTTTATT
1 TAATTTTTAATTGTTTATT
100981430 TAATT
1 TAATT
100981435 GATGTTGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.52
18 4 0.19
19 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TAATTTTTAATTGTTTATT
Found at i:100988603 original size:8 final size:8
Alignment explanation
Indices: 100988584--100988623 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
100988574 AAATTTCTTT
100988584 TAAAATTTA
1 TAAAA-TTA
100988593 TAAAATTA
1 TAAAATTA
100988601 T-AAATTA
1 TAAAATTA
*
100988608 TAAAATAA
1 TAAAATTA
100988616 TAAAATTA
1 TAAAATTA
100988624 CAATTTAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 7 0.25
8 16 0.57
9 5 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAAAATTA
Found at i:100988610 original size:15 final size:15
Alignment explanation
Indices: 100988590--100988619 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
100988580 CTTTTAAAAT
*
100988590 TTATAAAATTATAAA
1 TTATAAAATAATAAA
100988605 TTATAAAATAATAAA
1 TTATAAAATAATAAA
100988620 ATTACAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTATAAAATAATAAA
Found at i:100992216 original size:149 final size:149
Alignment explanation
Indices: 100992047--100992322 Score: 480
Period size: 149 Copynumber: 1.9 Consensus size: 149
100992037 TATAAAATTA
*
100992047 TAAATTGAATGAAAATTCAAATTTAATTTTGATATTTATTCTAAATATTTTTTAAAACTAAATCT
1 TAAATTGAATCAAAATTCAAATTTAATTTTGATATTTATTCTAAATATTTTTTAAAACTAAATCT
* *
100992112 CACGTATGTAAATTATATATTTACTTCACCCTTTGTCAACTGAAAACACATCAAAGCTAGCGGCA
66 CACGTATGTAAATTATATATTTACTTCACCCTGTGCCAACTGAAAACACATCAAAGCTAGCGGCA
100992177 GAGAGAAGGGGGGGGGCCT
131 GAGAGAAGGGGGGGGGCCT
* * *
100992196 TAAATTTAATCAAAATTCAAATTTATTTTTGATATTTATTCTAACTATTTTTTAAAACTAAATCT
1 TAAATTGAATCAAAATTCAAATTTAATTTTGATATTTATTCTAAATATTTTTTAAAACTAAATCT
* *
100992261 CATGTATGTAAATTATATATTTACTTCACCCTGTGCCAACTGAAGACACATCAAAGCTAGCG
66 CACGTATGTAAATTATATATTTACTTCACCCTGTGCCAACTGAAAACACATCAAAGCTAGCG
100992323 TGTAACACCC
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
149 119 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (149 bp):
TAAATTGAATCAAAATTCAAATTTAATTTTGATATTTATTCTAAATATTTTTTAAAACTAAATCT
CACGTATGTAAATTATATATTTACTTCACCCTGTGCCAACTGAAAACACATCAAAGCTAGCGGCA
GAGAGAAGGGGGGGGGCCT
Found at i:100993289 original size:39 final size:37
Alignment explanation
Indices: 100993222--100993314 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
100993212 ACCAGAATGG
* *
100993222 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
100993261 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
100993298 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
100993315 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:100993677 original size:3 final size:3
Alignment explanation
Indices: 100993669--100993716 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
100993659 ATTCCCACTC
* * * *
100993669 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
100993717 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:100993717 original size:18 final size:18
Alignment explanation
Indices: 100993670--100993718 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
100993660 TTCCCACTCA
*
100993670 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
100993688 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
100993706 TAATATTAATACT
1 TAATAATAATACT
100993719 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:100993718 original size:12 final size:12
Alignment explanation
Indices: 100993669--100993716 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
100993659 ATTCCCACTC
*
100993669 ATAATAATAATA
1 ATAATACTAATA
100993681 ATAATACTAATA
1 ATAATACTAATA
100993693 ATAATACTAATA
1 ATAATACTAATA
* *
100993705 CTAATATTAATA
1 ATAATACTAATA
100993717 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:100994457 original size:20 final size:20
Alignment explanation
Indices: 100994423--100994462 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
100994413 TTCTATTCTG
*
100994423 TTTCTTTTCTGTTTTGTTTC
1 TTTCTTTTCTGTTTTATTTC
100994443 TTTCTTTTTCT-TTTTATTTC
1 TTTC-TTTTCTGTTTTATTTC
100994463 CTTTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTCTTTTCTGTTTTATTTC
Found at i:100994629 original size:31 final size:28
Alignment explanation
Indices: 100994593--100994660 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
100994583 TTGTCTTTAT
**
100994593 TTAATTTATTTCTTAATATAATATTTATAA
1 TTAATTTATTTAATAATAT-A-ATTTATAA
* *
100994623 TGTAATTAATTTAATAATATACTTTATAA
1 T-TAATTTATTTAATAATATAATTTATAA
100994652 TTAATTTAT
1 TTAATTTAT
100994661 ATATTTATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 8 0.25
30 2 0.06
31 15 0.47
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (28 bp):
TTAATTTATTTAATAATATAATTTATAA
Found at i:100994677 original size:21 final size:20
Alignment explanation
Indices: 100994639--100994677 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
100994629 TAATTTAATA
*
100994639 ATATACTTTATAATTAATTT
1 ATATACTTTATAAATAATTT
*
100994659 ATATATTTATATAAATAAT
1 ATATACTT-TATAAATAAT
100994678 AATATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATACTTTATAAATAATTT
Found at i:101006853 original size:39 final size:39
Alignment explanation
Indices: 101006799--101006878 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
101006789 GTGTCTTATA
101006799 TATTAAAAAATAATAATTTTATCCTTATACACATTTTTT
1 TATTAAAAAATAATAATTTTATCCTTATACACATTTTTT
101006838 TATTAAAAAATAATAATTTTATCCTTATACACATTTTTT
1 TATTAAAAAATAATAATTTTATCCTTATACACATTTTTT
101006877 TA
1 TA
101006879 AATTACTAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (39 bp):
TATTAAAAAATAATAATTTTATCCTTATACACATTTTTT
Found at i:101008073 original size:29 final size:30
Alignment explanation
Indices: 101008019--101008079 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
101008009 AGTCTCAAAA
**
101008019 TTATATATGAATTTTGGTTTAATGTGTAATT
1 TTATATATGAATTTTAATTT-ATGTGTAATT
101008050 TTATATATGAATTTTAATTT-TGTGTAATT
1 TTATATATGAATTTTAATTTATGTGTAATT
101008079 T
1 T
101008080 CATACATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 10 0.36
31 18 0.64
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (30 bp):
TTATATATGAATTTTAATTTATGTGTAATT
Found at i:101008100 original size:29 final size:29
Alignment explanation
Indices: 101008041--101008099 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
101008031 TTTGGTTTAA
* * *
101008041 TGTGTAATTTTATATATGAATTTTAATTT
1 TGTGTAATTTCATACATAAATTTTAATTT
*
101008070 TGTGTAATTTCATACATAAAATTTTGATTT
1 TGTGTAATTTCATACAT-AAATTTTAATTT
101008100 GATCTAGTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.54
Consensus pattern (29 bp):
TGTGTAATTTCATACATAAATTTTAATTT
Found at i:101008238 original size:31 final size:30
Alignment explanation
Indices: 101008202--101008298 Score: 106
Period size: 31 Copynumber: 3.2 Consensus size: 30
101008192 ATAAAAATAA
101008202 ATGTATATAATTGAACCAAAATTAAAGTTTC
1 ATGTATATAATTGAACCAAAATTAAA-TTTC
* * *
101008233 ATGTATACATTTGAACCAAAATAAAATTTCC
1 ATGTATATAATTGAACCAAAATTAAATTT-C
** * *
101008264 ATAAATATAATTTAACC-AAATTAAAATTC
1 ATGTATATAATTGAACCAAAATTAAATTTC
101008293 ATGTAT
1 ATGTAT
101008299 CAAATTACAC
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
29 5 0.09
30 12 0.23
31 36 0.68
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.35
Consensus pattern (30 bp):
ATGTATATAATTGAACCAAAATTAAATTTC
Found at i:101009263 original size:29 final size:28
Alignment explanation
Indices: 101009231--101009297 Score: 71
Period size: 30 Copynumber: 2.3 Consensus size: 28
101009221 TAATTTTTCC
** * *
101009231 TTAATAATTATTAAATTATTTTATTGAA
1 TTAATAATTAAAAAATTAATTTATCGAA
*
101009259 TTTAATAAATAAAAAAATTAATTTATCGAA
1 -TTAAT-AATTAAAAAATTAATTTATCGAA
101009289 TTAATAATT
1 TTAATAATT
101009298 TTGTTCAATC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
28 3 0.10
29 10 0.32
30 18 0.58
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (28 bp):
TTAATAATTAAAAAATTAATTTATCGAA
Found at i:101017862 original size:39 final size:39
Alignment explanation
Indices: 101017815--101018069 Score: 388
Period size: 39 Copynumber: 6.5 Consensus size: 39
101017805 GTGTGAGATA
* *
101017815 TATATCCGGGCTAATTCCCGAAGGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
101017854 TATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
101017893 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
101017932 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
101017971 TATA-CCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCC-GGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * *
101018010 TATATCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
101018048 TACATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
101018070 CATGCTTTGT
Statistics
Matches: 200, Mismatches: 12, Indels: 7
0.91 0.05 0.03
Matches are distributed among these distances:
38 22 0.11
39 169 0.85
40 9 0.05
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:101017959 original size:117 final size:116
Alignment explanation
Indices: 101017782--101018069 Score: 386
Period size: 117 Copynumber: 2.5 Consensus size: 116
101017772 AGGATTTTAA
* * *
101017782 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAG-ATATATATCCGGGCTAATTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGG-CTTCGTGCT-AGTAT-TATATCCGGGCTAAGTCCCGAAGGCATTC
*
101017844 GTGCTAGTGTTATATCC-GGGCTAAGTCCCGAAGGTATTCGTGCTGGTATTATAT
63 GTGCTAGTGTTATA-CCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
* *
101017898 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGC-TTCGTGCTAGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGT
* *
101017963 GCTGGTGTTATACCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
65 GCTAGTGTTATACCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
* * *
101018015 CCGGGCTAAGTCCTGAAGGCTTTGTGCTAGTATTACATCCGGGCTTAAAGTCCCG
1 CCGGGCTAAGTCCCGAAGGCTTCGTGCTAGTATTATATCCGGGC-T-AAGTCCCG
101018070 CATGCTTTGT
Statistics
Matches: 152, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
115 1 0.01
116 41 0.27
117 100 0.66
118 10 0.07
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (116 bp):
CCGGGCTAAGTCCCGAAGGCTTCGTGCTAGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
CTAGTGTTATACCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
Found at i:101018086 original size:78 final size:77
Alignment explanation
Indices: 101017782--101018069 Score: 386
Period size: 78 Copynumber: 3.7 Consensus size: 77
101017772 AGGATTTTAA
* * * *
101017782 CCGGGCTAAGACCCGCAGGCCTTGTG-TGAG-ATATATATCCGGGCTAATTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCTG-GTAT-TATATCCGGGCTAAGTCCCGAAGGCATTCG
*
101017845 TGCTAGTGTTATAT
64 TGCTGGTGTTATAT
101017859 CCGGGCTAAGTCCCGAAGG-TATTCGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCT-TT-GTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCG
101017923 TGCTGGTGTTATAT
64 TGCTGGTGTTATAT
* *
101017937 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATA-CCTGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTATTATATCC-GGGCTAAGTCCCGAAGGCATTCG
101018001 TGCTGGTGTTATAT
64 TGCTGGTGTTATAT
* * *
101018015 CCGGGCTAAGTCCTGAAGGCTTTGTGCTAGTATTACATCCGGGCTTAAAGTCCCG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCTGGTATTATATCCGGGC-T-AAGTCCCG
101018070 CATGCTTTGT
Statistics
Matches: 189, Mismatches: 12, Indels: 18
0.86 0.05 0.08
Matches are distributed among these distances:
77 38 0.20
78 137 0.72
79 13 0.07
80 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
CTGGTGTTATAT
Found at i:101029895 original size:15 final size:15
Alignment explanation
Indices: 101029873--101029907 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
101029863 CGGATGAAAT
101029873 TTTA-ATTTTTATAA
1 TTTATATTTTTATAA
101029887 TTTATATTTTTATAA
1 TTTATATTTTTATAA
101029902 TTTATA
1 TTTATA
101029908 AAGGATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTATATTTTTATAA
Found at i:101034224 original size:17 final size:16
Alignment explanation
Indices: 101034202--101034237 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
101034192 AATTTGATCA
101034202 TTTTTAGTTCCTGTAAT
1 TTTTTAGTT-CTGTAAT
*
101034219 TTTTTAGTTTTGTAAT
1 TTTTTAGTTCTGTAAT
101034235 TTT
1 TTT
101034238 AGTCTTGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.17, C:0.06, G:0.11, T:0.67
Consensus pattern (16 bp):
TTTTTAGTTCTGTAAT
Found at i:101036557 original size:11 final size:11
Alignment explanation
Indices: 101036541--101036577 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
101036531 TTATAAATTA
101036541 TAATTAATATG
1 TAATTAATATG
101036552 TAATTAA-A--
1 TAATTAATATG
101036560 TAATTAATATG
1 TAATTAATATG
101036571 TAATTAA
1 TAATTAA
101036578 ATAAACTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 7 0.30
9 1 0.04
10 1 0.04
11 14 0.61
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43
Consensus pattern (11 bp):
TAATTAATATG
Found at i:101036564 original size:19 final size:19
Alignment explanation
Indices: 101036540--101036581 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
101036530 TTTATAAATT
101036540 ATAATTAATATGTAATTAA
1 ATAATTAATATGTAATTAA
101036559 ATAATTAATATGTAATTAA
1 ATAATTAATATGTAATTAA
101036578 ATAA
1 ATAA
101036582 ACTTTTAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
ATAATTAATATGTAATTAA
Found at i:101040749 original size:11 final size:11
Alignment explanation
Indices: 101040733--101040769 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
101040723 TTATAAATTA
101040733 TAATTAATATG
1 TAATTAATATG
101040744 TAATTAA-A--
1 TAATTAATATG
101040752 TAATTAATATG
1 TAATTAATATG
101040763 TAATTAA
1 TAATTAA
101040770 AATAAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 7 0.30
9 1 0.04
10 1 0.04
11 14 0.61
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43
Consensus pattern (11 bp):
TAATTAATATG
Found at i:101040756 original size:19 final size:19
Alignment explanation
Indices: 101040732--101040770 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
101040722 TTTATAAATT
101040732 ATAATTAATATGTAATTAA
1 ATAATTAATATGTAATTAA
101040751 ATAATTAATATGTAATTAA
1 ATAATTAATATGTAATTAA
101040770 A
1 A
101040771 ATAAACTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (19 bp):
ATAATTAATATGTAATTAA
Found at i:101042190 original size:12 final size:11
Alignment explanation
Indices: 101042172--101042201 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
101042162 AATTGAGATT
101042172 AAAAAATATTA
1 AAAAAATATTA
101042183 ATAAAAATATTA
1 A-AAAAATATTA
101042195 AAAAAAT
1 AAAAAAT
101042202 TAAAGTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AAAAAATATTA
Found at i:101043561 original size:168 final size:167
Alignment explanation
Indices: 101043314--101043780 Score: 589
Period size: 155 Copynumber: 2.9 Consensus size: 167
101043304 ACTTTTATCA
* * * *
101043314 TAAAGAAGCTGAATATAAGTCACTTAATTTGTTTATCATATAGTCCTTGTGTCCATAATTGCTAT
1 TAAAGAAGCTGAATATAGGTCACTTAATTTGTTTATCATGTAGTCCTTGTGTCCATAATTACTTT
*
101043379 TTAGACTCAATTATATAATTTTGGGCTTTAGAATTGGGTTTAGGAATAGGTCACATAATTACTTT
66 TTAGACTCAATTATATAATTTTAGGCTTTAGAATTGGGTTTAGGAATAGGTCACATAATTA-TTT
*
101043444 CAACTCATAATTTTGCAAGTCAATAATTAATTTTACCT
130 CAACTCATAATTTTGCAAGTCAATAATTAATTTTACCC
* * *
101043482 TAAAGAAGTTGAATATAGGTCATTTAATTTGTTTATCATGTATTCCTTGTGTCCATAATTACTTT
1 TAAAGAAGCTGAATATAGGTCACTTAATTTGTTTATCATGTAGTCCTTGTGTCCATAATTACTTT
* * *
101043547 TTAGACTAAATTATATAAATTTAGGCTTTAGAATTGGGTTTAGGAAGAGGTCAC------A--T-
66 TTAGACTCAATTATATAATTTTAGGCTTTAGAATTGGGTTTAGGAATAGGTCACATAATTATTTC
* * * *
101043603 AA-T--TGATTTGGCATGTCTATAATTAATTTTACCC
131 AACTCATAATTTTGCAAGTCAATAATTAATTTTACCC
* * * *
101043637 TAAAGAAGGTGAATATAGGTCACTTAATTTGTTTATCATGTAGTCCTTGTGTCCTTAGTTACATT
1 TAAAGAAGCTGAATATAGGTCACTTAATTTGTTTATCATGTAGTCCTTGTGTCCATAATTACTTT
* * * ** *
101043702 ATAGGCTCAATTATATAATTCTAGGCTTTAGGCTTGGGTTTAGGAATAGGTCGCATAATTATTTT
66 TTAGACTCAATTATATAATTTTAGGCTTTAGAATTGGGTTTAGGAATAGGTCACATAATTA-TTT
*
101043767 CGACTCATAATTTT
130 CAACTCATAATTTT
101043781 ATTAATCTAC
Statistics
Matches: 252, Mismatches: 34, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
155 130 0.52
157 1 0.00
158 2 0.01
159 1 0.00
161 1 0.00
162 1 0.00
164 1 0.00
165 1 0.00
166 1 0.00
168 113 0.45
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (167 bp):
TAAAGAAGCTGAATATAGGTCACTTAATTTGTTTATCATGTAGTCCTTGTGTCCATAATTACTTT
TTAGACTCAATTATATAATTTTAGGCTTTAGAATTGGGTTTAGGAATAGGTCACATAATTATTTC
AACTCATAATTTTGCAAGTCAATAATTAATTTTACCC
Found at i:101045224 original size:30 final size:30
Alignment explanation
Indices: 101045179--101045257 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
101045169 GGTTTTGTAC
* * *
101045179 AATTAAATATATAAATTTTTATTTAAATTT
1 AATTATATATTTAAATATTTATTTAAATTT
* *
101045209 AATTGTATATTTAAATATTTATTTTAATTT
1 AATTATATATTTAAATATTTATTTAAATTT
101045239 AATTATATACATTTAAATA
1 AATTATAT--ATTTAAATA
101045258 AATACTTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
30 32 0.78
32 9 0.22
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (30 bp):
AATTATATATTTAAATATTTATTTAAATTT
Found at i:101045267 original size:32 final size:30
Alignment explanation
Indices: 101045204--101045280 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 30
101045194 TTTTTATTTA
* ** *
101045204 AATTTAATTGTATATTTAAATATTTATTTT
1 AATTTAATTATATATTTAAATAAATACTTT
101045234 AATTTAATTATATACATTTAAATAAATACTTT
1 AATTTAATTATAT--ATTTAAATAAATACTTT
101045266 AATTTATAGTTATAT
1 AATTTA-A-TTATAT
101045281 TAGATAAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 12 0.31
32 20 0.51
33 1 0.03
34 6 0.15
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (30 bp):
AATTTAATTATATATTTAAATAAATACTTT
Found at i:101047524 original size:38 final size:38
Alignment explanation
Indices: 101047473--101047548 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
101047463 CGTTCCTTAA
101047473 ATGCAAAACTAATAGTAAAAATTTAACTAATAATCATC
1 ATGCAAAACTAATAGTAAAAATTTAACTAATAATCATC
*
101047511 ATGCAAAACTAATAGTCAAAATTTAACTAATAATCATC
1 ATGCAAAACTAATAGTAAAAATTTAACTAATAATCATC
101047549 GATTGAATGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.29
Consensus pattern (38 bp):
ATGCAAAACTAATAGTAAAAATTTAACTAATAATCATC
Found at i:101047540 original size:18 final size:18
Alignment explanation
Indices: 101047479--101047542 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
101047469 TTAAATGCAA
*
101047479 AACTAATAGTAAAAATTT
1 AACTAATAGTCAAAATTT
* ** **
101047497 AACTAATAATCATCATGCAA
1 AACTAATAGTCAAAAT--TT
101047517 AACTAATAGTCAAAATTT
1 AACTAATAGTCAAAATTT
101047535 AACTAATA
1 AACTAATA
101047543 ATCATCGATT
Statistics
Matches: 33, Mismatches: 11, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
18 20 0.61
20 13 0.39
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (18 bp):
AACTAATAGTCAAAATTT
Found at i:101068342 original size:167 final size:167
Alignment explanation
Indices: 101068053--101068386 Score: 607
Period size: 167 Copynumber: 2.0 Consensus size: 167
101068043 TTAACCACTA
* *
101068053 GACCCCGGCTGGTTGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCCGTTC
1 GACCCCAGCTGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCCGTTC
*
101068118 GATCCCCGGCAACGGCGTTTTCTTTTCATTTTTACATTTTAGGTTTAATTCTGCTTTTAGTCCCT
66 GATCCCCGGCAACGGCGTTTTCTTTCCATTTTTACATTTTAGGTTTAATTCTGCTTTTAGTCCCT
101068183 CTATTATACTGGAATTTAAGATTTGATCTTTC-ATTT
131 CTATTATACTGGAATTTAAGATTTGATCTTTCTATTT
*
101068219 GACCCCAGCTGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTT
1 GACCCCAGCTGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCC-CGTT
101068284 CGATCCCCGGCAACGGCGTTTTCTTTCCATTTTTACATTTTAGGTTTAATTCTGCTTTTAGTCCC
65 CGATCCCCGGCAACGGCGTTTTCTTTCCATTTTTACATTTTAGGTTTAATTCTGCTTTTAGTCCC
*
101068349 TCTATTATGCTGGAATTTAAGATTTGATCTTTCTATTT
130 TCTATTATACTGGAATTTAAGATTTGATCTTTCTATTT
101068387 TAATTTTGAT
Statistics
Matches: 161, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
166 58 0.36
167 99 0.61
168 4 0.02
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.39
Consensus pattern (167 bp):
GACCCCAGCTGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCCGTTC
GATCCCCGGCAACGGCGTTTTCTTTCCATTTTTACATTTTAGGTTTAATTCTGCTTTTAGTCCCT
CTATTATACTGGAATTTAAGATTTGATCTTTCTATTT
Found at i:101088592 original size:205 final size:204
Alignment explanation
Indices: 101088122--101088800 Score: 973
Period size: 205 Copynumber: 3.3 Consensus size: 204
101088112 AGCAGTTAAC
* *
101088122 ATACAGTTTTCGAGCATTACAAGATGGAAACACTATATCATGCATCCATCTTAAGGCATTCAACT
1 ATACAGTTTTCAAGCATTACAAGATGGAAACACTATATCATGCATCCATATTAAGGCATTCAACT
* * * *
101088187 TGCATTTTATATGGTACAATTATCCAAAAGAAATCAAGGCAGAGCAGTGGAACAAT-AAAATCAG
66 TACA-TTTATATGGTACAATTATCCAAATGAAAACAAGGCAGAGCAGTAGAAC-ATGAAAATCAG
*
101088251 CAGTTCAATGACAGAAATATTACTAATTTTTGAAACACAAAACACAA-ATGCAATTATACTTTCA
129 CAGTT-AATGACAGAAATATTACTAA-TTTTGATACACAAAACACAAGATGCAATTATACTTTCA
101088315 TCCACTCTGGTTTAT
192 TCCACTCTGG-TT-T
* *
101088330 ATACAGTTTTCAAGCATTACAAGATGGAAACGCTATATCATGCATCCATACTAAGGCATTCAACT
1 ATACAGTTTTCAAGCATTACAAGATGGAAACACTATATCATGCATCCATATTAAGGCATTCAACT
* * * *
101088395 TACATCTTATATGGTACAATTATCTAAATGAAAACAAGGGAGAGCAGCAGAACATGAAAATTAGC
66 TACAT-TTATATGGTACAATTATCCAAATGAAAACAAGGCAGAGCAGTAGAACATGAAAATCAGC
* *
101088460 AGTTAATGACAGAAATATTGCTAATTTTGATACACAAAACACAAGATGCAATAATAC-TTCAATC
130 AGTTAATGACAGAAATATTACTAATTTTGATACACAAAACACAAGATGCAATTATACTTTC-ATC
101088524 CACTCTGGTTT
194 CACTCTGGTTT
101088535 ATACAGTTTTCAAGCATTACAAGATGGAAACACTATATCATGCATCCATATTAAGGCATTCAACT
1 ATACAGTTTTCAAGCATTACAAGATGGAAACACTATATCATGCATCCATATTAAGGCATTCAACT
* * *
101088600 TACATTATATATGGTAAAATCATCCAAATGAAAACAAGGCAGAGCAGTAGAACATGCAAATCAGC
66 TACATT-TATATGGTACAATTATCCAAATGAAAACAAGGCAGAGCAGTAGAACATGAAAATCAGC
101088665 AGTTAATGACAGAAATATTACTAA-TTT--T----AAAACACAAGATGCAATTATACTTTCATCC
130 AGTTAATGACAGAAATATTACTAATTTTGATACACAAAACACAAGATGCAATTATACTTTCATCC
*
101088723 ATTCTGGTTT
195 ACTCTGGTTT
* * * * *
101088733 ATACACAGTTTTCAAGCATTACAAGATAGAAACACCATACCATGCATCCTTATTAAGGCACTCAA
1 AT--ACAGTTTTCAAGCATTACAAGATGGAAACACTATATCATGCATCCATATTAAGGCATTCAA
101088798 CTT
64 CTT
101088801 TCTAATTTCT
Statistics
Matches: 431, Mismatches: 32, Indels: 24
0.89 0.07 0.05
Matches are distributed among these distances:
198 36 0.08
199 3 0.01
200 59 0.14
202 1 0.00
204 4 0.01
205 143 0.33
206 24 0.06
207 44 0.10
208 117 0.27
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.28
Consensus pattern (204 bp):
ATACAGTTTTCAAGCATTACAAGATGGAAACACTATATCATGCATCCATATTAAGGCATTCAACT
TACATTTATATGGTACAATTATCCAAATGAAAACAAGGCAGAGCAGTAGAACATGAAAATCAGCA
GTTAATGACAGAAATATTACTAATTTTGATACACAAAACACAAGATGCAATTATACTTTCATCCA
CTCTGGTTT
Found at i:101093648 original size:33 final size:33
Alignment explanation
Indices: 101093603--101093667 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
101093593 CAAAAACAGA
*
101093603 ACCAATACCAAAACAAAA-GACACTCTCTCATGT
1 ACCAATACCAAAACAAAATGAC-CTCTCCCATGT
*
101093636 ACCAATATCAAAACAAAATGACCTCTCCCATG
1 ACCAATACCAAAACAAAATGACCTCTCCCATG
101093668 GATAAAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 26 0.90
34 3 0.10
ACGTcount: A:0.45, C:0.31, G:0.06, T:0.18
Consensus pattern (33 bp):
ACCAATACCAAAACAAAATGACCTCTCCCATGT
Found at i:101095641 original size:23 final size:23
Alignment explanation
Indices: 101095607--101095654 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
101095597 AAAAAGAACG
*
101095607 ATTTTTAAGATTTAATAATTGGC
1 ATTTTTAAGATTTAATAATTAGC
* *
101095630 ATTTTTAGGATTTAATCATTAGC
1 ATTTTTAAGATTTAATAATTAGC
101095653 AT
1 AT
101095655 AATGATTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.48
Consensus pattern (23 bp):
ATTTTTAAGATTTAATAATTAGC
Found at i:101099615 original size:17 final size:17
Alignment explanation
Indices: 101099593--101099627 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
101099583 ACTAAACCGA
101099593 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
101099610 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
101099627 C
1 C
101099628 TACTTGCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.54, G:0.00, T:0.17
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:101100735 original size:38 final size:39
Alignment explanation
Indices: 101100651--101100785 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
101100641 CCCAATATGG
*
101100651 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
101100690 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
101100728 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
101100769 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
101100786 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:101102362 original size:5 final size:5
Alignment explanation
Indices: 101102344--101102379 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
101102334 TTTCTTTTAT
101102344 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA
101102380 TACTTAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:101103139 original size:15 final size:14
Alignment explanation
Indices: 101103121--101103178 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
101103111 TAATTTTTTC
101103121 TTGTTGTATTTTCTT
1 TTGTT-TATTTTCTT
*
101103136 TTGTATATTTTCATT
1 TTGTTTATTTTC-TT
* *
101103151 TTGTTTTATTATATT
1 TTG-TTTATTTTCTT
*
101103166 TTATTTATTTTCT
1 TTGTTTATTTTCT
101103179 CTTTTATGAA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
14 15 0.44
15 13 0.38
16 6 0.18
ACGTcount: A:0.16, C:0.05, G:0.07, T:0.72
Consensus pattern (14 bp):
TTGTTTATTTTCTT
Found at i:101103235 original size:21 final size:22
Alignment explanation
Indices: 101103190--101103232 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
101103180 TTTTATGAAC
101103190 ATTTTTTAAATATTATATTATT
1 ATTTTTTAAATATTATATTATT
*
101103212 ATTTTTATATATATTAT-TTAT
1 ATTTTT-TAAATATTATATTAT
101103233 ATTAAGCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
ATTTTTTAAATATTATATTATT
Found at i:101105948 original size:15 final size:17
Alignment explanation
Indices: 101105928--101105959 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
101105918 TAATATTAGT
101105928 ACCAATC-AAA-TAAAA
1 ACCAATCTAAAGTAAAA
101105943 ACCAATCTAAAGTAAAA
1 ACCAATCTAAAGTAAAA
101105960 CAATCAGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.62, C:0.19, G:0.03, T:0.16
Consensus pattern (17 bp):
ACCAATCTAAAGTAAAA
Found at i:101115916 original size:31 final size:30
Alignment explanation
Indices: 101115872--101115933 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
101115862 ATATAATGCC
* *
101115872 ATTTAATATAAATATCAGATTAAACATTAA
1 ATTTAATATAAATACCAAATTAAACATTAA
* *
101115902 ATTTAAATTTAAATACCAAATTAAATATTAA
1 ATTT-AATATAAATACCAAATTAAACATTAA
101115933 A
1 A
101115934 ACTAAAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (30 bp):
ATTTAATATAAATACCAAATTAAACATTAA
Found at i:101115939 original size:25 final size:25
Alignment explanation
Indices: 101115897--101115957 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 25
101115887 CAGATTAAAC
** *
101115897 ATTAAAT-TTAAATTTAAATACCAA
1 ATTAAATATTAAAACTAAAAACCAA
*
101115921 ATTAAATATTAAAACTAAAAATCAA
1 ATTAAATATTAAAACTAAAAACCAA
* *
101115946 ATCATATATTAA
1 ATTAAATATTAA
101115958 CCTAAGAGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 7 0.23
25 23 0.77
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.34
Consensus pattern (25 bp):
ATTAAATATTAAAACTAAAAACCAA
Found at i:101119294 original size:29 final size:29
Alignment explanation
Indices: 101119248--101119333 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 29
101119238 CATATCCTCT
101119248 TTAAATTATTAATAAATTTATATTTTAATTA
1 TTAAATT-TTAA-AAATTTATATTTTAATTA
* *** *
101119279 TTTAATTTTAAAAATTTATAAAATGATTA
1 TTAAATTTTAAAAATTTATATTTTAATTA
*
101119308 TTAAATTTTTAAAAATTT-TCTTTTAA
1 TTAAA-TTTTAAAAATTTATATTTTAA
101119334 ATCATCAAAT
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
29 21 0.49
30 16 0.37
31 6 0.14
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (29 bp):
TTAAATTTTAAAAATTTATATTTTAATTA
Found at i:101132654 original size:33 final size:33
Alignment explanation
Indices: 101132617--101132688 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
101132607 TCAGCCTCAT
* *
101132617 CTTCATCGTCTTCATCAACAAATTCGCTATCAC
1 CTTCATCATCGTCATCAACAAATTCGCTATCAC
* * * *
101132650 CTTCATCATGGTCGTCAACGAATTCGCTATCAT
1 CTTCATCATCGTCATCAACAAATTCGCTATCAC
101132683 CTTCAT
1 CTTCAT
101132689 AGTCATCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.35
Consensus pattern (33 bp):
CTTCATCATCGTCATCAACAAATTCGCTATCAC
Found at i:101137451 original size:19 final size:19
Alignment explanation
Indices: 101137427--101137463 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
101137417 TTTATGCATG
101137427 AATAACAAAAACTCGAACC
1 AATAACAAAAACTCGAACC
* *
101137446 AATAACATAATCTCGAAC
1 AATAACAAAAACTCGAAC
101137464 TACATTACTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.24, G:0.05, T:0.16
Consensus pattern (19 bp):
AATAACAAAAACTCGAACC
Found at i:101139231 original size:30 final size:29
Alignment explanation
Indices: 101139165--101139239 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
101139155 TCTTCACAAA
**
101139165 TTTAAAATTTAATCCCTATAATTTTATCT
1 TTTAAAATTTAATCCCTATAATTTTAAAT
* * *
101139194 TTAAAAATTTAATCCCTCTACTTTTTAAAT
1 TTTAAAATTTAATCCCTATA-ATTTTAAAT
101139224 TTTAAAATTTAGATCC
1 TTTAAAATTTA-ATCC
101139240 AATTGTTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 18 0.47
30 16 0.42
31 4 0.11
ACGTcount: A:0.36, C:0.15, G:0.01, T:0.48
Consensus pattern (29 bp):
TTTAAAATTTAATCCCTATAATTTTAAAT
Found at i:101144152 original size:27 final size:27
Alignment explanation
Indices: 101144121--101144175 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
101144111 TGGATCTAAA
101144121 GTGTGTTCTTTTACCGCCAATGGGTAC
1 GTGTGTTCTTTTACCGCCAATGGGTAC
101144148 GTGTGTTCTTTTACCGCCAATGGGTAC
1 GTGTGTTCTTTTACCGCCAATGGGTAC
101144175 G
1 G
101144176 GATTTACCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.15, C:0.22, G:0.27, T:0.36
Consensus pattern (27 bp):
GTGTGTTCTTTTACCGCCAATGGGTAC
Found at i:101150658 original size:17 final size:16
Alignment explanation
Indices: 101150630--101150682 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
101150620 TTTGGTTCGC
101150630 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
101150646 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
101150663 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
101150679 TGTA
1 TGTA
101150683 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:101150747 original size:44 final size:45
Alignment explanation
Indices: 101150663--101150753 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
101150653 GGATTAGAGG
* * *
101150663 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
101150708 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
101150752 TG
1 TG
101150754 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Done.