Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 309 of 311
Found at i:101150935 original size:16 final size:16
Alignment explanation
Indices: 101150898--101150952 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
101150888 TTAATCATAT
*
101150898 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
101150914 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
101150929 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
101150947 -TAAAAT
1 TTAAAAT
101150953 TCTTATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:101150945 original size:18 final size:18
Alignment explanation
Indices: 101150904--101150952 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
101150894 ATATTTAAAC
101150904 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
101150922 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
101150938 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
101150953 TCTTATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:101151089 original size:156 final size:156
Alignment explanation
Indices: 101150805--101151126 Score: 581
Period size: 156 Copynumber: 2.1 Consensus size: 156
101150795 TAGAATACCC
* * *
101150805 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
*
101150870 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
101150935 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
101150961 TTAGCAGAAAATTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
* * *
101151026 TTATTAGTAATAAATATCTTAATTATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
101151091 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
101151117 TTAGCAGAAA
1 TTAGCAGAAA
101151127 TTTGTTATTG
Statistics
Matches: 159, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
156 159 1.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAAATTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:101151095 original size:18 final size:17
Alignment explanation
Indices: 101151074--101151108 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
101151064 TTATTATTAA
*
101151074 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
101151092 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
101151109 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:101151142 original size:137 final size:138
Alignment explanation
Indices: 101150991--101151256 Score: 410
Period size: 137 Copynumber: 1.9 Consensus size: 138
101150981 TAAATGATTA
* * * *
101150991 TTGTTAATGTTATTTAAATTTTAATAAGATTATTATTATTAGTAATAAAT-ATCTTAATTATATT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATT
* *
101151055 TAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTT-ATAATT
65 TAAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
101151119 AGCAGAAAT
130 AGCAGAAAT
*
101151128 TTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
****
101151193 AAACATAATTATTATTAAATACATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
101151257 CATATTCTTA
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
137 108 0.93
138 8 0.07
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (138 bp):
TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
GCAGAAAT
Found at i:101151290 original size:137 final size:135
Alignment explanation
Indices: 101151012--101151290 Score: 314
Period size: 137 Copynumber: 2.0 Consensus size: 135
101151002 ATTTAAATTT
* * * *
101151012 TAATAAGATTATTATTATTAGTAATAAATATCTTAATTATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
* * * *
101151077 TATTTTAATTAAAATATATAATTTAATAAAATTCTTATAATTAGCAGAAATTTGTTATTGTTATT
66 CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTA-CA-AAATTTCTTATTGTTACT
* **
101151142 TAAATTT
129 CAAATCA
101151149 TAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATTTAAACATAATTATTATTAAAT
1 TAATAAGATTATTAATATCAATAATAAAT-ATCTTAATCATATTTAAACATAATTATTATTAAAT
**** *
101151213 ACATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT-C-ATA-TTCTTATATGAATT
65 ACATTATAATTAAAATATATAATTTAATAAAATTCTT-ATAATTACAAAATTTCTTAT-TG---T
101151275 TACTCAAATCA
125 TACTCAAATCA
101151286 TAATA
1 TAATA
101151291 TAATGAAGAT
Statistics
Matches: 120, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
133 6 0.05
134 4 0.03
136 1 0.01
137 101 0.84
138 8 0.07
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (135 bp):
TAATAAGATTATTAATATCAATAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTACAAAATTTCTTATTGTTACTCA
AATCA
Found at i:101154675 original size:145 final size:145
Alignment explanation
Indices: 101154478--101154789 Score: 561
Period size: 145 Copynumber: 2.2 Consensus size: 145
101154468 ACATTAACAA
*
101154478 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGTTTTTTAATCAAGTTATTTTTTAA
1 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTATTTTTTAA
* *
101154543 TCAATCATAATAACAATGAATATTTGTTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
66 TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
101154608 CCAATTTGAATATAT
131 CCAATTTGAATATAT
*
101154623 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTGTTTTTTAA
1 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTATTTTTTAA
*
101154688 TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGAT
66 TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
*
101154753 CCAATTTTAATATAT
131 CCAATTTGAATATAT
*
101154768 TGAATATTTGTTTTTTAATCAA
1 TGAATATTTGTTTTCTAATCAA
101154790 GTTGTTTACT
Statistics
Matches: 160, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
145 160 1.00
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (145 bp):
TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTATTTTTTAA
TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
CCAATTTGAATATAT
Found at i:101154797 original size:64 final size:64
Alignment explanation
Indices: 101154705--101154829 Score: 223
Period size: 64 Copynumber: 2.0 Consensus size: 64
101154695 TAATAACAAA
*
101154705 GAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTTAATATATT
1 GAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTAATATATT
* *
101154769 GAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTTATAT
1 GAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTAATAT
101154830 GAATTTACTC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (64 bp):
GAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTAATATATT
Found at i:101157888 original size:22 final size:22
Alignment explanation
Indices: 101157832--101157893 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
101157822 ATAAATTAAT
*
101157832 TTTTTTATATAATAAT-TAAAAA
1 TTTTTAATA-AATAATATAAAAA
*
101157854 TTTAATTAA-AAATAATATAAATA
1 TTT--TTAATAAATAATATAAAAA
101157877 TTTTTAATAAATAATAT
1 TTTTTAATAAATAATAT
101157894 GAGTAGACCT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
21 4 0.12
22 18 0.53
23 9 0.26
24 3 0.09
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TTTTTAATAAATAATATAAAAA
Found at i:101164875 original size:17 final size:17
Alignment explanation
Indices: 101164853--101164886 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
101164843 ATCCACTAAT
*
101164853 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
101164870 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
101164887 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:101169514 original size:17 final size:17
Alignment explanation
Indices: 101169492--101169525 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
101169482 ATCCACTAAT
*
101169492 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
101169509 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
101169526 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:101171162 original size:24 final size:24
Alignment explanation
Indices: 101171130--101171177 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
101171120 ACTACCCCTT
101171130 CCAACACACACATAAATTCATCTC
1 CCAACACACACATAAATTCATCTC
101171154 CCAACACACACATAAATTCATCTC
1 CCAACACACACATAAATTCATCTC
101171178 GAGTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.38, G:0.00, T:0.21
Consensus pattern (24 bp):
CCAACACACACATAAATTCATCTC
Found at i:101189116 original size:21 final size:21
Alignment explanation
Indices: 101189079--101189137 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
101189069 TTTTCACAAG
*
101189079 ATATA-AAAAAT-AGAAATAA
1 ATATATAAAAATAAAAAATAA
**
101189098 ATATATAAAAATAAAAAATGT
1 ATATATAAAAATAAAAAATAA
*
101189119 ATTTATAAAATATAAAAAA
1 ATATATAAAA-ATAAAAAA
101189138 CATATAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 5 0.15
20 6 0.18
21 14 0.42
22 8 0.24
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.27
Consensus pattern (21 bp):
ATATATAAAAATAAAAAATAA
Found at i:101189160 original size:17 final size:18
Alignment explanation
Indices: 101189121--101189169 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
101189111 AAAAATGTAT
101189121 TTATAAAATATAAAAAAC
1 TTATAAAATATAAAAAAC
* * *
101189139 ATATAAATTGTAAAAAA-
1 TTATAAAATATAAAAAAC
*
101189156 TTATAAAAAATAAA
1 TTATAAAATATAAA
101189170 TTTTACAAAA
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
TTATAAAATATAAAAAAC
Found at i:101189630 original size:28 final size:27
Alignment explanation
Indices: 101189599--101189651 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
101189589 AATATTTAAA
101189599 TATTTAATATTATAAT-TTTCTATTTTTT
1 TATTTAA-ATT-TAATGTTTCTATTTTTT
*
101189627 TATTTAAATTTAATGTTTTTATTTT
1 TATTTAAATTTAATGTTTCTATTTT
101189652 AAATAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 12 0.52
28 7 0.30
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (27 bp):
TATTTAAATTTAATGTTTCTATTTTTT
Found at i:101196435 original size:29 final size:29
Alignment explanation
Indices: 101196393--101196450 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
101196383 TTATAGGGAC
*
101196393 TAAATAAAATTAGTCCCTCTATTATTAAA
1 TAAATAAAATTAGTCCCTATATTATTAAA
* * *
101196422 TAAATTAATTTAGTCTCTATATTATTAAA
1 TAAATAAAATTAGTCCCTATATTATTAAA
101196451 AAGAATCAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43
Consensus pattern (29 bp):
TAAATAAAATTAGTCCCTATATTATTAAA
Found at i:101197850 original size:20 final size:20
Alignment explanation
Indices: 101197825--101197874 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
101197815 TGGCTTAAAA
101197825 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
101197845 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
101197862 GTGGTAGTGGATT
1 TTGGTAGTGGATT
101197875 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:101202489 original size:20 final size:20
Alignment explanation
Indices: 101202464--101202513 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
101202454 TGGCTTAAAA
101202464 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
101202484 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
101202501 GTGGTAGTGGATT
1 TTGGTAGTGGATT
101202514 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:101204233 original size:17 final size:17
Alignment explanation
Indices: 101204213--101204254 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
101204203 TTATAATGTT
101204213 ATATTAA-TTAATTTCTA
1 ATATTAATTTAATTT-TA
101204230 ATATTAATTTAATTTTA
1 ATATTAATTTAATTTTA
101204247 AGTATTAA
1 A-TATTAA
101204255 ATGCCGGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
ATATTAATTTAATTTTA
Found at i:101212822 original size:21 final size:21
Alignment explanation
Indices: 101212796--101212838 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
101212786 GCTACTTTGC
*
101212796 CCAGTTTATAAAGTACATGAA
1 CCAGTTTATAAAGTACAAGAA
101212817 CCAGTTTATAAAGTACAAGAA
1 CCAGTTTATAAAGTACAAGAA
101212838 C
1 C
101212839 TACTTTGCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.26
Consensus pattern (21 bp):
CCAGTTTATAAAGTACAAGAA
Found at i:101213796 original size:268 final size:265
Alignment explanation
Indices: 101213315--101213816 Score: 803
Period size: 268 Copynumber: 1.9 Consensus size: 265
101213305 CTTGTAAGTA
* * *
101213315 CTTTTCTCATTTCTGTATATGTAAATGAATTTTTGGAGTCCTTTCTCCAAGTTCTTTGTGACCAT
1 CTTTTCCCATTTCTGTATATGTAAATGAATTTTTGGAGTCCTTTCTCCAAGGTCTTTGTAACCAT
* *
101213380 TTGATGAGCACATTGTCATTTGCTTATTGTTTTGAGATATACTTTGTATTCTTCATGTTTCAATA
66 TTGATGAGCACACTGTCATTTGCTGATTGTTTTGAGATATACTTTGTATTCTTCATGTTTCAATA
101213445 ATAGAATTTGCTTCATTTTGATGTCAATGAAATGTTTCACAATGCTAAGCTATTTTTCTTTTTTG
131 ATAGAATTTGCTTCATTTTGATGTCAATGAAATGTTTCACAATGCTAAGCTATTTTTCTTTTTTG
101213510 GCTTTGTTTTCTGGGTTATTTGCACCAGATGTCCCAAAATTATGGTCCGAATTTCAGACTGGTCC
196 GCTTTGTTTTCTGGGTTATTTGCACCAGATGTCCCAAAATTATGGTCCGAATTTCAGACTGGTCC
101213575 CTAAG
261 CTAAG
*
101213580 CTTTTCCCATTTCTGTATATGTAATTGAATTTTTGGAGTCCTTTCTCCAATGGTCTTTGTAACCA
1 CTTTTCCCATTTCTGTATATGTAAATGAATTTTTGGAGTCCTTTCTCCAA-GGTCTTTGTAACCA
* *
101213645 TTTGTTTTGAGCACACTGTCA-TTGCTGATTTGTTTTGAGATATTCTTTGTATTCTTCATGTTTC
65 TTTG--ATGAGCACACTGTCATTTGCTGA-TTGTTTTGAGATATACTTTGTATTCTTCATGTTTC
* * * * *
101213709 AATAATGGAATTTGGTTCATTTTGATGTCAATG-GAT-TTTGCACAATGTTAAGCTGTTTTTCCT
127 AATAATAGAATTTGCTTCATTTTGATGTCAATGAAATGTTT-CACAATGCTAAGCTATTTTT-CT
*
101213772 TTTTTGGCTTTGTTTTCTGGGTTATTTGCACTAGATGTCCCAAAA
190 TTTTTGGCTTTGTTTTCTGGGTTATTTGCACCAGATGTCCCAAAA
101213817 ATTTGAGTCT
Statistics
Matches: 217, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
265 48 0.22
266 19 0.09
267 26 0.12
268 124 0.57
ACGTcount: A:0.21, C:0.16, G:0.17, T:0.46
Consensus pattern (265 bp):
CTTTTCCCATTTCTGTATATGTAAATGAATTTTTGGAGTCCTTTCTCCAAGGTCTTTGTAACCAT
TTGATGAGCACACTGTCATTTGCTGATTGTTTTGAGATATACTTTGTATTCTTCATGTTTCAATA
ATAGAATTTGCTTCATTTTGATGTCAATGAAATGTTTCACAATGCTAAGCTATTTTTCTTTTTTG
GCTTTGTTTTCTGGGTTATTTGCACCAGATGTCCCAAAATTATGGTCCGAATTTCAGACTGGTCC
CTAAG
Found at i:101216107 original size:6 final size:6
Alignment explanation
Indices: 101216094--101216126 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
101216084 TAAGGGATAG
101216094 GGGT-T GGGTGT GGGTGT GGGTGT GGGTGT GGGT
1 GGGTGT GGGTGT GGGTGT GGGTGT GGGTGT GGGT
101216127 CGCAGCCGCG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.00, C:0.00, G:0.67, T:0.33
Consensus pattern (6 bp):
GGGTGT
Found at i:101220724 original size:19 final size:19
Alignment explanation
Indices: 101220694--101220730 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
101220684 CAATTACACC
101220694 AAATTAAAATTTATATATCG
1 AAATTAAAATTT-TATATCG
101220714 AAATT-AAATTTTATATC
1 AAATTAAAATTTTATATC
101220731 TCAATTCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 6 0.35
20 5 0.29
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (19 bp):
AAATTAAAATTTTATATCG
Found at i:101231994 original size:60 final size:60
Alignment explanation
Indices: 101231885--101232006 Score: 158
Period size: 61 Copynumber: 2.0 Consensus size: 60
101231875 ATATCATGAA
*
101231885 CTAACTTGGACAAAAAAAAAAGTTCAAACTCCAATGTGAGAACAATTGCCAAGTTCAAGGC
1 CTAACTTGAACAAAAAAAAAAGTTCAAACTCCAATGTGAGAACAATTGCCAAGTTC-AGGC
* ** * *
101231946 CTAACTTGAACAAAAAAGAAAGTTCAGGC-CTC-ATGTGAGAATAGTTGCCAAGTTCAGGC
1 CTAACTTGAACAAAAAAAAAAGTTCAAACTC-CAATGTGAGAACAATTGCCAAGTTCAGGC
101232005 CT
1 CT
101232007 TAAAAAATGA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
59 6 0.11
60 22 0.41
61 26 0.48
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (60 bp):
CTAACTTGAACAAAAAAAAAAGTTCAAACTCCAATGTGAGAACAATTGCCAAGTTCAGGC
Found at i:101232355 original size:4 final size:4
Alignment explanation
Indices: 101232346--101232390 Score: 90
Period size: 4 Copynumber: 11.2 Consensus size: 4
101232336 CTTATGAGAC
101232346 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA C
101232391 CTTAGAGCTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:101236061 original size:13 final size:13
Alignment explanation
Indices: 101236043--101236068 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
101236033 TTATAATAAA
101236043 TTTTATATATTAT
1 TTTTATATATTAT
101236056 TTTTATATATTAT
1 TTTTATATATTAT
101236069 GTAATTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTATATATTAT
Found at i:101236420 original size:17 final size:18
Alignment explanation
Indices: 101236400--101236433 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
101236390 TCTTTTTCCT
101236400 TTTTTAAATT-TTTATGA
1 TTTTTAAATTATTTATGA
*
101236417 TTTTTTAATTATTTATG
1 TTTTTAAATTATTTATG
101236434 TAATTATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (18 bp):
TTTTTAAATTATTTATGA
Found at i:101236420 original size:18 final size:18
Alignment explanation
Indices: 101236399--101236433 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
101236389 TTCTTTTTCC
101236399 TTTTTTAAATT-TTTATGA
1 TTTTTT-AATTATTTATGA
101236417 TTTTTTAATTATTTATG
1 TTTTTTAATTATTTATG
101236434 TAATTATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (18 bp):
TTTTTTAATTATTTATGA
Found at i:101239109 original size:15 final size:15
Alignment explanation
Indices: 101239079--101239135 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
101239069 CGATGAATTT
*
101239079 ATTGAATTTATATTG
1 ATTGAAATTATATTG
* *
101239094 ATTTAAATTATTTTG
1 ATTGAAATTATATTG
101239109 ATTGAAATTATATTG
1 ATTGAAATTATATTG
101239124 ATTG-AATTATAT
1 ATTGAAATTATAT
101239136 AATATATATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 8 0.22
15 29 0.78
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.53
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:101239540 original size:20 final size:21
Alignment explanation
Indices: 101239508--101239571 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 21
101239498 GGTTTTATCG
101239508 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCGTGTGTCGT
101239529 ATCAGG-ACCTCGTGTGTCGT
1 ATCAGGCACCTCGTGTGTCGT
* * * **
101239549 TTTAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCGTGTGTCGT
101239570 AT
1 AT
101239572 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
20 18 0.50
21 18 0.50
ACGTcount: A:0.16, C:0.22, G:0.27, T:0.36
Consensus pattern (21 bp):
ATCAGGCACCTCGTGTGTCGT
Found at i:101243658 original size:23 final size:23
Alignment explanation
Indices: 101243628--101243676 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
101243618 GAGAAGCCCT
101243628 CTCTT-GAGCCATATAACAGGAAG
1 CTCTTAGAGCCAT-TAACAGGAAG
*
101243651 CTCTTGAGAGCCATTAACGGGAAG
1 CTCTT-AGAGCCATTAACAGGAAG
101243675 CT
1 CT
101243677 TATCTGGGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 5 0.22
24 11 0.48
25 7 0.30
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (23 bp):
CTCTTAGAGCCATTAACAGGAAG
Found at i:101243744 original size:24 final size:24
Alignment explanation
Indices: 101243633--101243750 Score: 80
Period size: 24 Copynumber: 4.8 Consensus size: 24
101243623 GCCCTCTCTT
* *
101243633 GAGCCATATAACAGGAAGCTCTTGA
1 GAGCCA-ATAACAGGAAGCTCATGC
* * *
101243658 GAGCCATTAACGGGAAGCTTAT-C
1 GAGCCAATAACAGGAAGCTCATGC
* *
101243681 TGGGCTATATAAC-GAGAAGCTCATGC
1 -GAGCCA-ATAACAG-GAAGCTCATGC
**
101243707 GAG-TTATAATCAGGAAGCTCATGC
1 GAGCCAATAA-CAGGAAGCTCATGC
*
101243731 GAGCCAATAACAGGTAGCTC
1 GAGCCAATAACAGGAAGCTC
101243751 CGGATAGCCA
Statistics
Matches: 72, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
23 4 0.06
24 42 0.58
25 25 0.35
26 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.21
Consensus pattern (24 bp):
GAGCCAATAACAGGAAGCTCATGC
Found at i:101243839 original size:26 final size:26
Alignment explanation
Indices: 101243802--101243877 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
101243792 AGTAGCTCCG
*
101243802 AAGAGCCATTAATCAGGAAGCTTACA
1 AAGAGCCATTAATCAGGAAGCTCACA
* * *
101243828 AAGAGCCTTTAATCGGGAAGCTCACG
1 AAGAGCCATTAATCAGGAAGCTCACA
* *
101243854 AAGAGTCATATAA-CAGGACGCTCA
1 AAGAGCCAT-TAATCAGGAAGCTCA
101243878 TAAGAGCTGC
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 38 0.93
27 3 0.07
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.18
Consensus pattern (26 bp):
AAGAGCCATTAATCAGGAAGCTCACA
Found at i:101244350 original size:21 final size:20
Alignment explanation
Indices: 101244316--101244360 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
101244306 TAAACGAGTA
101244316 AATTTAACTCAATTCAATAC
1 AATTTAACTCAATTCAATAC
* *
101244336 AATTTATATTCAATTCAATTC
1 AATTTA-ACTCAATTCAATAC
101244357 AATT
1 AATT
101244361 CACATCTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTTAACTCAATTCAATAC
Found at i:101244351 original size:5 final size:5
Alignment explanation
Indices: 101244324--101244362 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
101244314 TAAATTTAAC
* *
101244324 TCAAT TCAAT ACAAT TTATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
101244363 CATCTTAGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:101247820 original size:13 final size:13
Alignment explanation
Indices: 101247802--101247826 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101247792 AAGAACCAAA
101247802 AAAAATAAAAAAT
1 AAAAATAAAAAAT
101247815 AAAAATAAAAAA
1 AAAAATAAAAAA
101247827 CCCATATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:101252902 original size:59 final size:59
Alignment explanation
Indices: 101252833--101252947 Score: 194
Period size: 59 Copynumber: 1.9 Consensus size: 59
101252823 AAAAAGCCTA
*
101252833 TTTTTTATGACTATAAGGTACATATTTTAGATAATCACTTCAAAATCTGAGTTGATTTT
1 TTTTTTATGACTATAAGGTACATATTTTAGATAATCACTTCAAAATCTAAGTTGATTTT
* * *
101252892 TTTTTTATGACTATAAGTTACTTGTTTTAGATAATCACTTCAAAATCTAAGTTGAT
1 TTTTTTATGACTATAAGGTACATATTTTAGATAATCACTTCAAAATCTAAGTTGAT
101252948 ATTTAATTCT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.46
Consensus pattern (59 bp):
TTTTTTATGACTATAAGGTACATATTTTAGATAATCACTTCAAAATCTAAGTTGATTTT
Found at i:101256289 original size:20 final size:20
Alignment explanation
Indices: 101256251--101256289 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
101256241 CGTAAAATAA
**
101256251 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGACTTACT
*
101256271 TTTCTGTAAAATGACTTAC
1 TTTCTGGAAAATGACTTAC
101256290 AGGAAAATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (20 bp):
TTTCTGGAAAATGACTTACT
Found at i:101259393 original size:13 final size:13
Alignment explanation
Indices: 101259375--101259399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101259365 CATCACTAAT
101259375 GAAATTAAAAATA
1 GAAATTAAAAATA
101259388 GAAATTAAAAAT
1 GAAATTAAAAAT
101259400 TGTAGAGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
GAAATTAAAAATA
Found at i:101275839 original size:12 final size:12
Alignment explanation
Indices: 101275824--101275854 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
101275814 TTCTCTTTTA
101275824 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
101275836 TTTTTCTTTCTC
1 TTTTTCTTTCCC
101275848 TTTTTCT
1 TTTTTCT
101275855 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:101275955 original size:16 final size:16
Alignment explanation
Indices: 101275934--101275964 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
101275924 TTTATTATTT
101275934 TATTAACATAATATAA
1 TATTAACATAATATAA
*
101275950 TATTAATATAATATA
1 TATTAACATAATATA
101275965 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:101278286 original size:24 final size:24
Alignment explanation
Indices: 101278242--101278287 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
101278232 ATTTGTACTT
*
101278242 ATTTTTAAATATATATTTTAAAGC
1 ATTTTTAAATATATATATTAAAGC
*
101278266 ATTTTTTAATATAT-TCATTAAA
1 ATTTTTAAATATATAT-ATTAAA
101278288 TTATATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52
Consensus pattern (24 bp):
ATTTTTAAATATATATATTAAAGC
Found at i:101285467 original size:8 final size:8
Alignment explanation
Indices: 101285454--101285479 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
101285444 AAATTCGGTA
101285454 CATGTATG
1 CATGTATG
101285462 CATGTATG
1 CATGTATG
101285470 CATGTATG
1 CATGTATG
101285478 CA
1 CA
101285480 ACTGCATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (8 bp):
CATGTATG
Found at i:101288797 original size:14 final size:14
Alignment explanation
Indices: 101288778--101288805 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
101288768 AACCACATGA
101288778 AATCATCAAATAAT
1 AATCATCAAATAAT
101288792 AATCATCAAATAAT
1 AATCATCAAATAAT
101288806 CCCCGAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (14 bp):
AATCATCAAATAAT
Found at i:101306176 original size:5 final size:5
Alignment explanation
Indices: 101306166--101306253 Score: 134
Period size: 5 Copynumber: 18.8 Consensus size: 5
101306156 TAATTATGTT
101306166 TTATA TTATA -T-TA TTATA TTATA TTATA TTATA TTATA TTATA -TATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
101306213 -TATA TTATA TTATA TTATA TTATA -T-TA TTATA TTATA TTAT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTAT
101306254 TATATATATG
Statistics
Matches: 78, Mismatches: 0, Indels: 10
0.89 0.00 0.11
Matches are distributed among these distances:
3 4 0.05
4 12 0.15
5 62 0.79
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:101306193 original size:23 final size:23
Alignment explanation
Indices: 101306167--101306262 Score: 137
Period size: 23 Copynumber: 4.2 Consensus size: 23
101306157 AATTATGTTT
101306167 TATATTATA-T-TATTATATTATA
1 TATATTATATTATATTATA-TATA
101306189 TTATATTATATTATATTATATATA
1 -TATATTATATTATATTATATATA
101306213 TATATTATATTATATTATAT-TA
1 TATATTATATTATATTATATATA
101306235 TATTATTATATTATATTAT-TATA
1 TA-TATTATATTATATTATATATA
101306258 TATAT
1 TATAT
101306263 GACAAAGAAA
Statistics
Matches: 69, Mismatches: 0, Indels: 9
0.88 0.00 0.12
Matches are distributed among these distances:
22 8 0.12
23 49 0.71
24 5 0.07
25 7 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TATATTATATTATATTATATATA
Found at i:101306197 original size:28 final size:27
Alignment explanation
Indices: 101306166--101306262 Score: 149
Period size: 28 Copynumber: 3.4 Consensus size: 27
101306156 TAATTATGTT
101306166 TTATATTATATTATTATATTATATTATA
1 TTATATTATATTA-TATATTATATTATA
101306194 TTATATTATATTATATATATATATTATA
1 TTATATTATATTATATAT-TATATTATA
101306222 TTATATTATATTATATTATTATATTATA
1 TTATATTATATTATA-TATTATATTATA
101306250 TTATTATATATAT
1 TTA-TAT-TATAT
101306263 GACAAAGAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
27 5 0.08
28 49 0.75
29 6 0.09
30 5 0.08
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (27 bp):
TTATATTATATTATATATTATATTATA
Found at i:101306328 original size:40 final size:40
Alignment explanation
Indices: 101306271--101306366 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
101306261 ATGACAAAGA
101306271 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
101306312 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
101306352 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
101306367 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:101307133 original size:29 final size:30
Alignment explanation
Indices: 101307074--101307131 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
101307064 TCCGAGCCTT
101307074 GGGGCAAAAATGTAATTATGAAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
101307104 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
101307132 AGAGTCAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.43, C:0.03, G:0.24, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:101307361 original size:13 final size:13
Alignment explanation
Indices: 101307343--101307374 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
101307333 TTTCCAGCAA
101307343 TTATGAATTTATT
1 TTATGAATTTATT
101307356 TTATGAATTTATT
1 TTATGAATTTATT
*
101307369 TGATGA
1 TTATGA
101307375 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:101307583 original size:50 final size:50
Alignment explanation
Indices: 101307468--101307710 Score: 281
Period size: 50 Copynumber: 4.7 Consensus size: 50
101307458 CATTTGGGTA
* * *
101307468 AAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATC
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C
*
101307522 ATGAGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGAC
1 A--AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGAC
* * *
101307574 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGAC
* * * *
101307624 GAGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCAC
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GAC
* **
101307674 GAGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AAG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
101307711 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 19, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
49 1 0.01
50 89 0.54
51 29 0.17
52 2 0.01
53 3 0.02
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGAC
Found at i:101307663 original size:100 final size:103
Alignment explanation
Indices: 101307468--101307718 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 103
101307458 CATTTGGGTA
101307468 AAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCC
1 AAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCC
* *
101307533 CCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GAC
63 CCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCAC
* * *
101307574 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCT
1 AAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCT
101307636 ATAAGACCATGTCTGGGACATGGCATGGGCACCATCAC
66 ATAAGACCATGTCTGGGACATGGCATGGGCACCATCAC
* * *
101307674 GAGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AAG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
101307719 GTTATTATCA
Statistics
Matches: 133, Mismatches: 9, Indels: 10
0.88 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 39 0.29
105 2 0.02
106 41 0.31
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCT
ATAAGACCATGTCTGGGACATGGCATGGGCACCATCAC
Found at i:101319433 original size:22 final size:22
Alignment explanation
Indices: 101319405--101319449 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
101319395 AGGGGGAGTG
101319405 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
101319427 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
101319449 T
1 T
101319450 TTTTTATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:101339601 original size:16 final size:15
Alignment explanation
Indices: 101339565--101339598 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
101339555 AATTTTTGTA
101339565 TTTTAATTTAATTAT
1 TTTTAATTTAATTAT
101339580 TTTTAATTTAATTAT
1 TTTTAATTTAATTAT
101339595 TTTT
1 TTTT
101339599 TAAAAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTAATTTAATTAT
Found at i:101339615 original size:21 final size:21
Alignment explanation
Indices: 101339584--101339624 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
101339574 AATTATTTTT
*
101339584 AATTTAATTAT-TTTTTAAAA
1 AATTTAATTATATTTGTAAAA
101339604 AATTTAAATTATATTTGTAAA
1 AATTT-AATTATATTTGTAAA
101339625 GTTATTAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 6 0.33
22 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
AATTTAATTATATTTGTAAAA
Found at i:101339881 original size:23 final size:23
Alignment explanation
Indices: 101339850--101339898 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
101339840 GGTTTGGATC
* * *
101339850 AATATAAAAGTTAAAATTAAAAA
1 AATACAAAAATTAAAAATAAAAA
*
101339873 AATACAAAAATTAAAAATAAACA
1 AATACAAAAATTAAAAATAAAAA
101339896 AAT
1 AAT
101339899 TAGAATACGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.22
Consensus pattern (23 bp):
AATACAAAAATTAAAAATAAAAA
Found at i:101341667 original size:30 final size:31
Alignment explanation
Indices: 101341614--101341680 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
101341604 TAATATATAT
* *
101341614 TTTTATGATTTTTAGAATGATTAAATTAAAA
1 TTTTATGATTTATAGAAAGATTAAATTAAAA
* *
101341645 TTTTATTATTTAT-GAAAGATTAAATTATAA
1 TTTTATGATTTATAGAAAGATTAAATTAAAA
101341675 TTTTAT
1 TTTTAT
101341681 CAATTATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 21 0.66
31 11 0.34
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.52
Consensus pattern (31 bp):
TTTTATGATTTATAGAAAGATTAAATTAAAA
Found at i:101344274 original size:5 final size:5
Alignment explanation
Indices: 101344240--101344272 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
101344230 ATTGAAAAAG
*
101344240 ATAAA ATAAA ATAAA ATAAA ATAAA ATATA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATA
101344273 TAGTTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (5 bp):
ATAAA
Found at i:101344517 original size:47 final size:48
Alignment explanation
Indices: 101344433--101344531 Score: 157
Period size: 47 Copynumber: 2.1 Consensus size: 48
101344423 CTTACTCTCC
101344433 AACTTTAATTTAAAAAAAACCCATAAGTATTTAAAATAAAAATTTTAAAT
1 AACTTTAATTTAAAAAAAA-CCATAAGTATTTAAAAT-AAAATTTTAAAT
*
101344483 AACTTTAATTT-TAAAAAA-CATAAGTATTTAAAATAAAATTTTAAAT
1 AACTTTAATTTAAAAAAAACCATAAGTATTTAAAATAAAATTTTAAAT
101344529 AAC
1 AAC
101344532 ATAGAAACTT
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
46 15 0.31
47 16 0.33
49 6 0.12
50 11 0.23
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (48 bp):
AACTTTAATTTAAAAAAAACCATAAGTATTTAAAATAAAATTTTAAAT
Found at i:101344765 original size:20 final size:19
Alignment explanation
Indices: 101344722--101344766 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
101344712 AAAAAATATT
*
101344722 AATTTGTAAAAAAAACTAA
1 AATTTGTAAAAAAAACAAA
101344741 AATTTGTAAAAGAAAA-AAA
1 AATTTGTAAAA-AAAACAAA
101344760 ATATTTG
1 A-ATTTG
101344767 ATGATTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (19 bp):
AATTTGTAAAAAAAACAAA
Found at i:101371702 original size:70 final size:70
Alignment explanation
Indices: 101371569--101371729 Score: 216
Period size: 70 Copynumber: 2.3 Consensus size: 70
101371559 CATGGCAAAG
* *
101371569 TGTGAAATGTAGGTATGGTATCATCCATACTGAGTTGTGATATATAGGTATGGTATCATCCATAC
1 TGTGAAATGTAGGTATGGTATCATCCATACTAAGTTGTGATATATAGGTATGGCATCATCCATAC
101371634 TAAGT
66 TAAGT
* * *
101371639 TGTGATATGTAGGTATGGTATCATCCATACTAAGTTGTGATATGTAGGTATGGCAT-TTCCCATA
1 TGTGAAATGTAGGTATGGTATCATCCATACTAAGTTGTGATATATAGGTATGGCATCAT-CCATA
**
101371703 CCGAGT
65 CTAAGT
** *
101371709 TGAAAAATGTAAGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
101371730 TTCAATGAGG
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
69 1 0.01
70 78 0.99
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (70 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTAAGTTGTGATATATAGGTATGGCATCATCCATAC
TAAGT
Found at i:101371710 original size:35 final size:35
Alignment explanation
Indices: 101371569--101371691 Score: 219
Period size: 35 Copynumber: 3.5 Consensus size: 35
101371559 CATGGCAAAG
* *
101371569 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGATATGTAGGTATGGTATCATCCATACTAAGT
*
101371604 TGTGATATATAGGTATGGTATCATCCATACTAAGT
1 TGTGATATGTAGGTATGGTATCATCCATACTAAGT
101371639 TGTGATATGTAGGTATGGTATCATCCATACTAAGT
1 TGTGATATGTAGGTATGGTATCATCCATACTAAGT
101371674 TGTGATATGTAGGTATGG
1 TGTGATATGTAGGTATGG
101371692 CATTTCCCAT
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 84 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (35 bp):
TGTGATATGTAGGTATGGTATCATCCATACTAAGT
Found at i:101378638 original size:35 final size:35
Alignment explanation
Indices: 101378466--101378626 Score: 216
Period size: 35 Copynumber: 4.6 Consensus size: 35
101378456 CCTCATTGAA
* ** * *
101378466 ATACCATACCTACATTTTTCAACTCGGTATGGGA-A
1 ATACCATACCTACATATCACAACTCAGTAT-GGATG
* *
101378501 ATGCCATACCTACATATCACAACTTAGTATGGATG
1 ATACCATACCTACATATCACAACTCAGTATGGATG
101378536 ATACCATACCTACATATCACAACTCAGTATGGATG
1 ATACCATACCTACATATCACAACTCAGTATGGATG
*
101378571 ATACCATACCTATATATCACAACTCAGTATGGATG
1 ATACCATACCTACATATCACAACTCAGTATGGATG
* *
101378606 ATAGCATACCTACATTTCACA
1 ATACCATACCTACATATCACA
101378627 CTTTGCCATG
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
34 3 0.03
35 109 0.97
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (35 bp):
ATACCATACCTACATATCACAACTCAGTATGGATG
Found at i:101382981 original size:13 final size:14
Alignment explanation
Indices: 101382949--101382990 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
101382939 TCAAAGAGAG
*
101382949 TATTTAATTTTAAGTT
1 TATTTAA-TATAA-TT
101382965 TATTT-ATATAATT
1 TATTTAATATAATT
101382978 TATTTAATATAAT
1 TATTTAATATAAT
101382991 AATTGGTGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 7 0.29
14 11 0.46
15 1 0.04
16 5 0.21
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (14 bp):
TATTTAATATAATT
Found at i:101387837 original size:9 final size:10
Alignment explanation
Indices: 101387816--101387840 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
101387806 AAACAATAAG
101387816 AAAACGACAA
1 AAAACGACAA
101387826 AAAACGACAA
1 AAAACGACAA
101387836 AAAAC
1 AAAAC
101387841 CTTACTTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.20, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAACGACAA
Found at i:101391208 original size:20 final size:21
Alignment explanation
Indices: 101391168--101391208 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
101391158 AGTTTAACTG
* *
101391168 CTCGATTTCAATTGATTTTTA
1 CTCGATTTCAATCGATCTTTA
101391189 CTCG-TTTCAATCGATCTTTA
1 CTCGATTTCAATCGATCTTTA
101391209 TCAATTCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.49
Consensus pattern (21 bp):
CTCGATTTCAATCGATCTTTA
Found at i:101401895 original size:21 final size:20
Alignment explanation
Indices: 101401869--101401917 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
101401859 AATTTAAAAA
*
101401869 AAAAAATTAG-AATTAATATGT
1 AAAAAATAAGAAATTAA-AT-T
*
101401890 AAAAAAAAAGAAATTAAATT
1 AAAAAATAAGAAATTAAATT
101401910 AAAAAATA
1 AAAAAATA
101401918 TAAAATTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 8 0.33
21 10 0.42
22 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.24
Consensus pattern (20 bp):
AAAAAATAAGAAATTAAATT
Found at i:101401922 original size:27 final size:28
Alignment explanation
Indices: 101401858--101401922 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
101401848 ATCATCACTT
* *
101401858 AAATTTAAAAAAAAAAATTAGAATTAAT
1 AAATATAAAAAAAAAAATTAGAATTAAA
**
101401886 ATGTA-AAAAAAAAGAAATTA-AATTAAA
1 AAATATAAAAAAAA-AAATTAGAATTAAA
101401913 AAATATAAAA
1 AAATATAAAA
101401923 TTTAGAGTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
27 17 0.59
28 12 0.41
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.25
Consensus pattern (28 bp):
AAATATAAAAAAAAAAATTAGAATTAAA
Found at i:101401923 original size:20 final size:22
Alignment explanation
Indices: 101401869--101401924 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 22
101401859 AATTTAAAAA
*
101401869 AAAAAAT-TAGAATTAATATGT
1 AAAAAATATAAAATTAATATGT
*
101401890 AAAAAA-AAAGAAATTAA-AT-T
1 AAAAAATATA-AAATTAATATGT
101401910 AAAAAATATAAAATT
1 AAAAAATATAAAATT
101401925 TAGAGTAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
20 12 0.41
21 11 0.38
22 6 0.21
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (22 bp):
AAAAAATATAAAATTAATATGT
Found at i:101404681 original size:51 final size:51
Alignment explanation
Indices: 101404521--101404678 Score: 262
Period size: 51 Copynumber: 3.1 Consensus size: 51
101404511 ACTTTTGATT
* * *
101404521 AGTGACAAGTGATAAGTGGTAGCCTCAGCTATACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
*
101404572 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
* *
101404623 AGTGATAAGTGATAAGTGGTATCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
101404674 AGTGA
1 AGTGA
101404679 TAAATGTGAT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 100 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:101420468 original size:23 final size:24
Alignment explanation
Indices: 101420426--101420470 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
101420416 TAATTGCAAA
*
101420426 TTTAATATTTATATATTTTATTCT
1 TTTAATATTTATATAATTTATTCT
*
101420450 TTTAAT-TTTATTTAATTTATT
1 TTTAATATTTATATAATTTATT
101420471 ATTAATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTAATATTTATATAATTTATTCT
Found at i:101420477 original size:21 final size:21
Alignment explanation
Indices: 101420451--101420492 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
101420441 TTTTATTCTT
*
101420451 TTAATTTTAT-TTAATTTATTA
1 TTAATTTAATCTT-ATTTATTA
101420472 TTAATTTAATCTTATTTATTA
1 TTAATTTAATCTTATTTATTA
101420493 ACATAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
TTAATTTAATCTTATTTATTA
Found at i:101420492 original size:18 final size:16
Alignment explanation
Indices: 101420459--101420493 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
101420449 TTTTAATTTT
101420459 ATTTAATTTATTATTA
1 ATTTAATTTATTATTA
101420475 ATTTAATCTTATTTATTA
1 ATTTAAT-TTA-TTATTA
101420493 A
1 A
101420494 CATAATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 3 0.18
18 7 0.41
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTTAATTTATTATTA
Found at i:101436843 original size:15 final size:15
Alignment explanation
Indices: 101436825--101436872 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
101436815 AAAATTAGAA
*
101436825 TTTAGTTTTTGTATT
1 TTTAGTTTTTTTATT
* **
101436840 TTTATTTTTTTTAAA
1 TTTAGTTTTTTTATT
101436855 TTTAGTCTTTTTTATT
1 TTTAGT-TTTTTTATT
101436871 TT
1 TT
101436873 AGATTTTAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.75
Consensus pattern (15 bp):
TTTAGTTTTTTTATT
Found at i:101456475 original size:54 final size:54
Alignment explanation
Indices: 101456410--101456516 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
101456400 CTTGAGTGGG
* * * * *
101456410 TAGGTTAAAGATGTGACTGATGACAGTGAGAACTGGGGAAATTTGAATAAAATA
1 TAGGTCAAAGATGTCACTGATGAAAGTGAGAACTAGGGAAATTTGAAGAAAATA
* * *
101456464 TAGGTCAAAGATGTCATTGATGAAAGTGTGAACTAGGGAAGTTTGAAGAAAAT
1 TAGGTCAAAGATGTCACTGATGAAAGTGAGAACTAGGGAAATTTGAAGAAAAT
101456517 TCATGAGATT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.40, C:0.06, G:0.28, T:0.26
Consensus pattern (54 bp):
TAGGTCAAAGATGTCACTGATGAAAGTGAGAACTAGGGAAATTTGAAGAAAATA
Found at i:101456868 original size:29 final size:28
Alignment explanation
Indices: 101456836--101456895 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
101456826 AGAATTAGAT
*
101456836 CAAATCAAAATTTCATA-TATAAAATTGCA
1 CAAATC-AAAGTTCA-AGTATAAAATTGCA
*
101456865 CAAAATCAAAGTTCAAGTATACAATTGCA
1 C-AAATCAAAGTTCAAGTATAAAATTGCA
101456894 CA
1 CA
101456896 TTAAACCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
28 2 0.07
29 20 0.74
30 5 0.19
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.27
Consensus pattern (28 bp):
CAAATCAAAGTTCAAGTATAAAATTGCA
Found at i:101463875 original size:60 final size:60
Alignment explanation
Indices: 101463762--101463875 Score: 133
Period size: 60 Copynumber: 1.9 Consensus size: 60
101463752 ATTATTTAAA
* * * * *
101463762 AAATTTAGTCTCTAATGTTTATAAAATTTGTCATTTTAGTTTAAATTATAAAAATTCAAT
1 AAATTTAGCCTCTAATGTTTACAAAATTTGTCAATTTAATTTAAATTAGAAAAATTCAAT
* *
101463822 AAATTTAGCCT-TCAATTTTTACAAAATTTGTCAATTTAA-TTATAATTCGAAAAA
1 AAATTTAGCCTCT-AATGTTTACAAAATTTGTCAATTTAATTTA-AATTAGAAAAA
101463876 AACTCAATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
59 4 0.09
60 41 0.91
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (60 bp):
AAATTTAGCCTCTAATGTTTACAAAATTTGTCAATTTAATTTAAATTAGAAAAATTCAAT
Found at i:101467281 original size:53 final size:53
Alignment explanation
Indices: 101467201--101467301 Score: 134
Period size: 53 Copynumber: 1.9 Consensus size: 53
101467191 AAAACTCAAA
* * *
101467201 TATCAAATTAAAAAAACTTAGACACT-AATTTAAATATTAAAATCAAATGCAGG
1 TATCAAATTAAAAAAACTTAAAAACTAAATTT-AACATTAAAATCAAATGCAGG
*
101467254 TATCAAATTAAAAAAA-TTAAAAAACTAAATTTAACATTAAAATTAAAT
1 TATCAAATTAAAAAAACTT-AAAAACTAAATTTAACATTAAAATCAAAT
101467302 TCAAATAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
52 2 0.05
53 35 0.83
54 5 0.12
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (53 bp):
TATCAAATTAAAAAAACTTAAAAACTAAATTTAACATTAAAATCAAATGCAGG
Found at i:101472273 original size:31 final size:31
Alignment explanation
Indices: 101472238--101472298 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
101472228 CTATTCAAAA
* *
101472238 GTTTTCATTTAAATTACTAAACTATTTGAAC
1 GTTTTCATTTAAATCACTAAACTAATTGAAC
* * *
101472269 GTTTTTATTTAAGTCACTGAACTAATTGAA
1 GTTTTCATTTAAATCACTAAACTAATTGAA
101472299 TATTTTTGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.44
Consensus pattern (31 bp):
GTTTTCATTTAAATCACTAAACTAATTGAAC
Found at i:101485281 original size:19 final size:19
Alignment explanation
Indices: 101485230--101485291 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
101485220 TACCTAAAAG
*
101485230 TTTTGATTTTTT-TTTTAAA
1 TTTTGATTTTTTATTTT-TA
101485249 TTTTGATCTTTTTATTTTTA
1 TTTTGAT-TTTTTATTTTTA
* **
101485269 TTTTTATTTTTTAAATTTA
1 TTTTGATTTTTTATTTTTA
101485288 TTTT
1 TTTT
101485292 AGTCTTTCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 21 0.57
20 12 0.32
21 4 0.11
ACGTcount: A:0.19, C:0.02, G:0.03, T:0.76
Consensus pattern (19 bp):
TTTTGATTTTTTATTTTTA
Found at i:101485514 original size:6 final size:6
Alignment explanation
Indices: 101485503--101485538 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
101485493 GTATGATATG
*
101485503 AAATTA AAATTA AAATTA AAATTA AATATAA AAATT
1 AAATTA AAATTA AAATTA AAATTA AA-ATTA AAATT
101485539 CTAAATTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AAATTA
Found at i:101486230 original size:33 final size:34
Alignment explanation
Indices: 101486188--101486253 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
101486178 TCTCACGTTC
*
101486188 CTTCAAAGAGGA-GGTTTTTTTTAAAGAACAAAT
1 CTTCAAAGAGGAGGGTTTTTTTAAAAGAACAAAT
101486221 CTTCAAAGAGGAGGGTTTTTTTAAAAGAACAAA
1 CTTCAAAGAGGAGGGTTTTTTTAAAAGAACAAA
101486254 ACTTTAGGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 12 0.39
34 19 0.61
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (34 bp):
CTTCAAAGAGGAGGGTTTTTTTAAAAGAACAAAT
Found at i:101486468 original size:31 final size:31
Alignment explanation
Indices: 101486433--101486491 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
101486423 AAATTATTCC
** *
101486433 TTGAACTTGGTAATTGTTCCCATATTGAAGT
1 TTGAACTTGACAATTGTTCCCACATTGAAGT
*
101486464 TTGAATTTGACAATTGTTCCCACATTGA
1 TTGAACTTGACAATTGTTCCCACATTGA
101486492 GCTCTTAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (31 bp):
TTGAACTTGACAATTGTTCCCACATTGAAGT
Found at i:101487778 original size:52 final size:52
Alignment explanation
Indices: 101487710--101487825 Score: 214
Period size: 52 Copynumber: 2.2 Consensus size: 52
101487700 CGAGAACTTA
*
101487710 AAAAAAAAATTTGGTGCTGGCCTTATAATGGCCGACACCAGTACGAGTATTT
1 AAAAAAAAATTTGGTGCTGGCCTTATAATGGCCAACACCAGTACGAGTATTT
*
101487762 AAAAAAAAATTTGGTGCTGGCCTTGTAATGGCCAACACCAGTACGAGTATTT
1 AAAAAAAAATTTGGTGCTGGCCTTATAATGGCCAACACCAGTACGAGTATTT
101487814 AAAAAAAAATTT
1 AAAAAAAAATTT
101487826 ACCTTCTATT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (52 bp):
AAAAAAAAATTTGGTGCTGGCCTTATAATGGCCAACACCAGTACGAGTATTT
Found at i:101488241 original size:51 final size:50
Alignment explanation
Indices: 101488169--101488351 Score: 170
Period size: 51 Copynumber: 3.5 Consensus size: 50
101488159 TATTTTCACA
* *
101488169 CCTTCTAATGGTCGGCACCAGTACGAGTATTTAAAAAAAAATTGGTGCTGG
1 CCTTATAATGGCCGGCACCAGTACGA-TATTTAAAAAAAAATTGGTGCTGG
** ** *
101488220 CCTTATAACCGCCGGCACCAGTACGA-ATAAAAAAATCAAAACTTTTTTGTGCTGG
1 CCTTATAATGGCCGGCACCAGTACGATATTTAAAAA--AAAA----TTGGTGCTGG
* * **
101488275 CCTTGTAATGGCCGGCACCAGTACAAATATTTAAAAAAAAATTGGTTTTGG
1 CCTTATAATGGCCGGCACCAGTAC-GATATTTAAAAAAAAATTGGTGCTGG
* *
101488326 CCTTCTAATGGCCGACACCAGTACGA
1 CCTTATAATGGCCGGCACCAGTACGA
101488352 AAAAAATTCA
Statistics
Matches: 105, Mismatches: 19, Indels: 17
0.74 0.13 0.12
Matches are distributed among these distances:
49 7 0.07
50 1 0.01
51 55 0.52
55 34 0.32
56 1 0.01
57 7 0.07
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (50 bp):
CCTTATAATGGCCGGCACCAGTACGATATTTAAAAAAAAATTGGTGCTGG
Found at i:101488289 original size:55 final size:54
Alignment explanation
Indices: 101488213--101488396 Score: 168
Period size: 51 Copynumber: 3.5 Consensus size: 54
101488203 AAAAAAATTG
* ** *
101488213 GTGCTGGCCTTATAACCGCCGGCACCAGTACGAATAAAAAAATCAAAACTTTTTT
1 GTGCTGGCCTTCTAATGGCCGACACCAGTACGAATAAAAAAATCAAAA-TTTTTT
* * * * **
101488268 GTGCTGGCCTTGTAATGGCCGGCACCAGTACAAATATTTAAAAA--AAAATTGGTT
1 GTGCTGGCCTTCTAATGGCCGACACCAGTACGAATA--AAAAAATCAAAATTTTTT
* **
101488322 -T--TGGCCTTCTAATGGCCGACACCAGTACG-A-AAAAAATTC-ATTTTTTTT
1 GTGCTGGCCTTCTAATGGCCGACACCAGTACGAATAAAAAAATCAAAATTTTTT
101488370 GTGCTGGCCTTCTAATGGCCGACACCA
1 GTGCTGGCCTTCTAATGGCCGACACCA
101488397 AAACTTATAT
Statistics
Matches: 106, Mismatches: 16, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
47 4 0.04
48 5 0.05
49 2 0.02
50 1 0.01
51 48 0.45
53 1 0.01
54 4 0.04
55 36 0.34
57 5 0.05
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (54 bp):
GTGCTGGCCTTCTAATGGCCGACACCAGTACGAATAAAAAAATCAAAATTTTTT
Found at i:101489613 original size:34 final size:34
Alignment explanation
Indices: 101489564--101489637 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
101489554 AGTGCCACGA
101489564 TTCACAACTCAGTATGGAAACACCATACCTACGT
1 TTCACAACTCAGTATGGAAACACCATACCTACGT
* * * *
101489598 TTCACAGCTCGGTATGGAAATACCATACTTACGT
1 TTCACAACTCAGTATGGAAACACCATACCTACGT
101489632 TTCACA
1 TTCACA
101489638 CATTGCCATG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (34 bp):
TTCACAACTCAGTATGGAAACACCATACCTACGT
Found at i:101489746 original size:27 final size:27
Alignment explanation
Indices: 101489716--101489779 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
101489706 TGGCAGACTA
101489716 TATCACTTTGTCATGATTGACACACTT
1 TATCACTTTGTCATGATTGACACACTT
* *
101489743 TATCACTTTGTCATGATTGGCTCACTT
1 TATCACTTTGTCATGATTGACACACTT
101489770 TATCACTTTG
1 TATCACTTTG
101489780 CCATTGTTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (27 bp):
TATCACTTTGTCATGATTGACACACTT
Found at i:101489918 original size:31 final size:31
Alignment explanation
Indices: 101489873--101489988 Score: 162
Period size: 31 Copynumber: 3.7 Consensus size: 31
101489863 TTGTCACTTT
* * *
101489873 TAGCCGAAGCTACCACTATTCACTGATCAGG
1 TAGCTGAAGCTACCACTTTTCACTAATCAGG
*
101489904 TAGCTGGAGCTACCACTTTTCACTAATCAGG
1 TAGCTGAAGCTACCACTTTTCACTAATCAGG
*
101489935 TAG-TCGAAGCTACTACTTTTCACTAATCAGG
1 TAGCT-GAAGCTACCACTTTTCACTAATCAGG
*
101489966 TAGCCGAAGCTACCACTTTTCAC
1 TAGCTGAAGCTACCACTTTTCAC
101489989 ATTGTACACA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
30 1 0.01
31 74 0.99
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (31 bp):
TAGCTGAAGCTACCACTTTTCACTAATCAGG
Found at i:101490062 original size:33 final size:33
Alignment explanation
Indices: 101490006--101490093 Score: 124
Period size: 33 Copynumber: 2.7 Consensus size: 33
101489996 ACATAAGGCA
101490006 TACATTTCCTTTTCAAG-TGTACACACAAAGTG
1 TACATTTCCTTTTCAAGTTGTACACACAAAGTG
* * * *
101490038 TACGTTTCATTTTTAAGTTGTACACACACAGTG
1 TACATTTCCTTTTCAAGTTGTACACACAAAGTG
*
101490071 TACATTTCCTTTTCCAGTTGTAC
1 TACATTTCCTTTTCAAGTTGTAC
101490094 CTTTTAGGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 14 0.30
33 33 0.70
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.40
Consensus pattern (33 bp):
TACATTTCCTTTTCAAGTTGTACACACAAAGTG
Found at i:101492778 original size:51 final size:51
Alignment explanation
Indices: 101492702--101492815 Score: 183
Period size: 51 Copynumber: 2.2 Consensus size: 51
101492692 AGTGACAAGC
* * *
101492702 GACAAGCGACAAGTGATAAGTGGTAGCTTTAGCTACTCTTATCTGATCAGT
1 GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
* *
101492753 GACAAGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATTAGT
1 GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
101492804 GACAAGTGATAA
1 GACAAGTGATAA
101492816 ATGTGATCAG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (51 bp):
GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
Found at i:101496882 original size:15 final size:15
Alignment explanation
Indices: 101496862--101496890 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
101496852 GAAATAAAGG
101496862 AAAGAAACAGAATGA
1 AAAGAAACAGAATGA
101496877 AAAGAAACAGAATG
1 AAAGAAACAGAATG
101496891 TGGGAACGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.07, G:0.21, T:0.07
Consensus pattern (15 bp):
AAAGAAACAGAATGA
Found at i:101497317 original size:23 final size:21
Alignment explanation
Indices: 101497271--101497311 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
101497261 TTTGGTTAAA
101497271 AATTGAATAGAAATGAAGTATG
1 AATTGAATAGAAA-GAAGTATG
101497293 AATTGAGATAGAAA-AAGTA
1 AATTGA-ATAGAAAGAAGTA
101497312 AGTGAAATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 6 0.33
23 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (21 bp):
AATTGAATAGAAAGAAGTATG
Found at i:101497690 original size:15 final size:15
Alignment explanation
Indices: 101497642--101497691 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
101497632 TTTATCAAAT
101497642 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* * *
101497657 TCATTTTGATTGAAT
1 TTATATTGATTGAAA
101497672 TTATATTGATTGAAA
1 TTATATTGATTGAAA
101497687 TTATA
1 TTATA
101497692 ATATATATAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.36, C:0.02, G:0.12, T:0.50
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:101497707 original size:10 final size:10
Alignment explanation
Indices: 101497688--101497720 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
101497678 TGATTGAAAT
101497688 TATA-ATATA
1 TATACATATA
101497697 TATACATATA
1 TATACATATA
101497707 TATACATATA
1 TATACATATA
101497717 TATA
1 TATA
101497721 TGATCTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (10 bp):
TATACATATA
Found at i:101501862 original size:31 final size:31
Alignment explanation
Indices: 101501817--101501963 Score: 231
Period size: 31 Copynumber: 4.7 Consensus size: 31
101501807 TTGTCACTTT
* *
101501817 TAGCCGAAGCTACCACTATTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTAATCAGG
* *
101501848 TAGCTGGAGCTACCACTTTTCACTAATCAGG
1 TAGCCGAAGCTACCACTTTTCACTAATCAGG
*
101501879 TAGCCGAAGCTACTACTTTTCACTAATCAGG
1 TAGCCGAAGCTACCACTTTTCACTAATCAGG
*
101501910 TAGCCGAAGCTACCACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTAATCAGG
*
101501941 TAGCCGAAACTACCACTTTTCAC
1 TAGCCGAAGCTACCACTTTTCAC
101501964 ATTGTACACA
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (31 bp):
TAGCCGAAGCTACCACTTTTCACTAATCAGG
Found at i:101502004 original size:32 final size:31
Alignment explanation
Indices: 101501956--101502068 Score: 113
Period size: 33 Copynumber: 3.5 Consensus size: 31
101501946 GAAACTACCA
*
101501956 CTTTTCACA-TTGTACACATAAGGCATACATTTC
1 CTTTTCA-AGTTGTACACACAAGG--TACATTTC
*
101501989 CTTTTCAAG-TGTACACACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACAC-AAG-GTACATTTC
*
101502021 CTTTTTAAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACA-AG-GTACATTTC
*
101502054 CTTTTCCAGTTGTAC
1 CTTTTCAAGTTGTAC
101502069 CTTTTAGGTA
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
32 25 0.36
33 43 0.62
34 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (31 bp):
CTTTTCAAGTTGTACACACAAGGTACATTTC
Found at i:101502039 original size:33 final size:33
Alignment explanation
Indices: 101501981--101502068 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
101501971 ACATAAGGCA
101501981 TACATTTCCTTTTCAAG-TGTACACACAAAGTG
1 TACATTTCCTTTTCAAGTTGTACACACAAAGTG
* * *
101502013 TACGTTTCCTTTTTAAGTTGTACACACACAGTG
1 TACATTTCCTTTTCAAGTTGTACACACAAAGTG
*
101502046 TACATTTCCTTTTCCAGTTGTAC
1 TACATTTCCTTTTCAAGTTGTAC
101502069 CTTTTAGGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
32 15 0.31
33 34 0.69
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (33 bp):
TACATTTCCTTTTCAAGTTGTACACACAAAGTG
Found at i:101504755 original size:51 final size:51
Alignment explanation
Indices: 101504679--101504792 Score: 201
Period size: 51 Copynumber: 2.2 Consensus size: 51
101504669 AGTGACAACC
* *
101504679 GACAAGCGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
1 GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
*
101504730 GACAAGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGT
1 GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
101504781 GACAAGTGATAA
1 GACAAGTGATAA
101504793 ATGTGATCAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (51 bp):
GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
Found at i:101507733 original size:46 final size:46
Alignment explanation
Indices: 101507674--101507849 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
101507664 ATTTTTGGTG
* *
101507674 TTGGCCTTGTAATGGCCGGCACCAGTACAAGTATTTAAAAAAAAAT
1 TTGGCCTTCTAATGGCCGGCACCAGTACGAGTATTTAAAAAAAAAT
* ** *
101507720 TTGGCTTTCTAATGGTTGGCACTAGTACGAGTATTTAAAAAAAAATT
1 TTGGCCTTCTAATGGCCGGCACCAGTACGAGTATTTAAAAAAAAA-T
* * *
101507767 GGTGCTGGCCTTATAATGGCCGGCATCAGTACGAGTATTTAAAAAAAATGGTT
1 --T--TGGCCTTCTAATGGCCGGCACCAGTACGAGTATTTAAAAAAAA---AT
* *
101507820 TTAGCCTTCTAATGGCCGACACCAGTACGA
1 TTGGCCTTCTAATGGCCGGCACCAGTACGA
101507850 AAAAAATTTC
Statistics
Matches: 105, Mismatches: 17, Indels: 13
0.78 0.13 0.10
Matches are distributed among these distances:
46 39 0.37
47 1 0.01
49 26 0.25
51 38 0.36
53 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (46 bp):
TTGGCCTTCTAATGGCCGGCACCAGTACGAGTATTTAAAAAAAAAT
Found at i:101507901 original size:103 final size:105
Alignment explanation
Indices: 101507765--101507971 Score: 294
Period size: 109 Copynumber: 2.0 Consensus size: 105
101507755 TAAAAAAAAA
*
101507765 TTGGTGCTGGCCTTATAATGGCCGGCATCAGTACGAGTA-TTTAAAAAAAA-TGGTTTTAGCCTT
1 TTGGTGCTGGCCTTATAATAGCCGGCATCAGTACGAGTATTTTAAAAAAAATTGGTTTTAGCCTT
* *
101507828 CTAATGGCCGACACCAGTACGAAAAAAATTTCAAAATCTT
66 CTAATGGCCGACACCAGTACAAAAAAAAATTCAAAATCTT
* * *
101507868 TTGGTGCTGGTCTTATAATAGCTGGCA-CTAGTACGAGTATTTTTTTTAAAAAAAATTGGTTTTG
1 TTGGTGCTGGCCTTATAATAGCCGGCATC-AGTACGAGTA----TTTTAAAAAAAATTGGTTTTA
101507932 GCCTTCTAATGGCCGACACCAGTACAAAAAAAAATTCAAA
61 GCCTTCTAATGGCCGACACCAGTACAAAAAAAAATTCAAA
101507972 TTTTCTTGGT
Statistics
Matches: 91, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
102 1 0.01
103 34 0.37
108 11 0.12
109 45 0.49
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (105 bp):
TTGGTGCTGGCCTTATAATAGCCGGCATCAGTACGAGTATTTTAAAAAAAATTGGTTTTAGCCTT
CTAATGGCCGACACCAGTACAAAAAAAAATTCAAAATCTT
Found at i:101508003 original size:109 final size:108
Alignment explanation
Indices: 101507765--101508004 Score: 287
Period size: 109 Copynumber: 2.3 Consensus size: 108
101507755 TAAAAAAAAA
* * *
101507765 TTGGTGCTGGCCTTATAATGGCCGGCA-TCAGTACGAGTA-----TTTAAAAAAAATGGTTTTAG
1 TTGGTGCAGGCCTTATAATAGCTGGCACT-AGTACGAGTATTTTTTTTAAAAAAAATGGTTTTAG
* *
101507824 CCTTCTAATGGCCGACACCAGTACGAAAAAAATTTCAAAATCTT
65 CCTTCTAATGGCCGACACCAGTACAAAAAAAAATTCAAAATCTT
* * *
101507868 TTGGTGCTGGTCTTATAATAGCTGGCACTAGTACGAGTATTTTTTTTAAAAAAAATTGGTTTTGG
1 TTGGTGCAGGCCTTATAATAGCTGGCACTAGTACGAGTATTTTTTTTAAAAAAAA-TGGTTTTAG
*
101507933 CCTTCTAATGGCCGACACCAGTACAAAAAAAAATTC-AAATTTT
65 CCTTCTAATGGCCGACACCAGTACAAAAAAAAATTCAAAATCTT
* * * *
101507976 CTTGGTGGAGGCCTTCTAATGGTTGGCAC
1 -TTGGTGCAGGCCTTATAATAGCTGGCAC
101508005 CAAAACTTAT
Statistics
Matches: 116, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
103 34 0.29
104 1 0.01
108 17 0.15
109 64 0.55
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (108 bp):
TTGGTGCAGGCCTTATAATAGCTGGCACTAGTACGAGTATTTTTTTTAAAAAAAATGGTTTTAGC
CTTCTAATGGCCGACACCAGTACAAAAAAAAATTCAAAATCTT
Found at i:101508618 original size:55 final size:51
Alignment explanation
Indices: 101508550--101508682 Score: 144
Period size: 50 Copynumber: 2.5 Consensus size: 51
101508540 AAAAGTTTTC
* *
101508550 TAATGGCCAGCACCAGTACGAGTATTTAAAAAAATAATTTTTGGAGTTGGCCCTT-
1 TAATGGCCGGCACCAGTACGAGTATTT---AAAAT-ATTTTTGGAGCTGG-CCTTG
* * * * *
101508605 TAATGGCCGGCACCAGTACGAATATTT-TAATTTTTTTTGTGCTGGCCTTG
1 TAATGGCCGGCACCAGTACGAGTATTTAAAATATTTTTGGAGCTGGCCTTG
101508655 TAATGGCCGGCACCAGTACGAGTATTTA
1 TAATGGCCGGCACCAGTACGAGTATTTA
101508683 TTTTTTATTT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
49 4 0.06
50 36 0.53
51 3 0.04
55 25 0.37
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (51 bp):
TAATGGCCGGCACCAGTACGAGTATTTAAAATATTTTTGGAGCTGGCCTTG
Found at i:101508713 original size:54 final size:51
Alignment explanation
Indices: 101508601--101508736 Score: 150
Period size: 54 Copynumber: 2.6 Consensus size: 51
101508591 TGGAGTTGGC
* **
101508601 CCTTTAATGGCCGGCACCAGTACGAATA-TT-TTAATTTTTTTTGTGCTGG
1 CCTTTAATGGCCGGCACCAGTACGAGTATTTATTAATTTTTTTTGTGCTAA
** **
101508650 CCTTGTAATGGCCGGCACCAGTACGAGTATTTATTTTTTATTTTTTGGTTTTAA
1 CCTT-TAATGGCCGGCACCAGTACGAGTATTTATTAATT-TTTTTT-GTGCTAA
*
101508704 CCTTCTAATGACCGGCACCAGTACGAGTATTTA
1 CCTT-TAATGGCCGGCACCAGTACGAGTATTTA
101508737 AAAAAAAAAT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 4 0.05
50 23 0.32
51 2 0.03
52 4 0.05
53 6 0.08
54 34 0.47
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (51 bp):
CCTTTAATGGCCGGCACCAGTACGAGTATTTATTAATTTTTTTTGTGCTAA
Found at i:101511585 original size:20 final size:19
Alignment explanation
Indices: 101511548--101511591 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
101511538 CTGTTCTGTT
*
101511548 ATGGGCCAATTGTATTGAA
1 ATGGGCCAACTGTATTGAA
* *
101511567 ATGGGCCCAACTGTGTTGAT
1 ATGGG-CCAACTGTATTGAA
101511587 ATGGG
1 ATGGG
101511592 AAAGGCCCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.30
Consensus pattern (19 bp):
ATGGGCCAACTGTATTGAA
Found at i:101511684 original size:32 final size:33
Alignment explanation
Indices: 101511648--101511753 Score: 120
Period size: 32 Copynumber: 3.4 Consensus size: 33
101511638 ATACTGATAT
101511648 GGGCTA-GGCCCAGTATACTCTGTTACTGTAAG
1 GGGCTATGGCCCAGTATACTCTGTTACTGTAAG
* * *
101511680 GGGCTATGGCCCAG---A-T-TGATACT-AATAT
1 GGGCTATGGCCCAGTATACTCTGTTACTGTA-AG
101511708 GGGCTA-GGCCCAGTATACTCTGTTACTGTAAG
1 GGGCTATGGCCCAGTATACTCTGTTACTGTAAG
101511740 GGGCTATGGCCCAG
1 GGGCTATGGCCCAG
101511754 ATTAATATTG
Statistics
Matches: 59, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
27 8 0.14
28 13 0.22
29 1 0.02
30 2 0.03
31 1 0.02
32 19 0.32
33 15 0.25
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (33 bp):
GGGCTATGGCCCAGTATACTCTGTTACTGTAAG
Found at i:101511695 original size:60 final size:60
Alignment explanation
Indices: 101511620--101511782 Score: 290
Period size: 60 Copynumber: 2.7 Consensus size: 60
101511610 GACTTGTATA
101511620 GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTGTTACTGTAAG
1 GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTGTTACTGTAAG
*
101511680 GGGCTATGGCCCAGATTGATACTAATATGGGCTAGGCCCAGTATACTCTGTTACTGTAAG
1 GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTGTTACTGTAAG
* *
101511740 GGGCTATGGCCCAGATTAATATTGATATGGGCTAAGGCCCAGT
1 GGGCTATGGCCCAGATTGATACTGATATGGGCT-AGGCCCAGT
101511783 TAACACTAAA
Statistics
Matches: 98, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
60 89 0.91
61 9 0.09
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (60 bp):
GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTGTTACTGTAAG
Found at i:101511712 original size:28 final size:26
Alignment explanation
Indices: 101511616--101511720 Score: 86
Period size: 28 Copynumber: 3.7 Consensus size: 26
101511606 TCTCGACTTG
101511616 TATA-GGGCTATGGCCCAGATTGATAC
1 TATATGGGCTA-GGCCCAGATTGATAC
*
101511642 TGATATGGGCTAGGCCCAGTATACTCTGTTAC
1 T-ATATGGGCTAGGCCCAG---A-T-TGATAC
* *
101511674 TGTAAGGGGCTATGGCCCAGATTGATAC
1 TAT-ATGGGCTA-GGCCCAGATTGATAC
101511702 TAATATGGGCTAGGCCCAG
1 T-ATATGGGCTAGGCCCAG
101511721 TATACTCTGT
Statistics
Matches: 63, Mismatches: 6, Indels: 19
0.72 0.07 0.22
Matches are distributed among these distances:
26 1 0.02
27 17 0.27
28 19 0.30
29 2 0.03
30 2 0.03
31 2 0.03
32 13 0.21
33 7 0.11
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
TATATGGGCTAGGCCCAGATTGATAC
Found at i:101512908 original size:108 final size:106
Alignment explanation
Indices: 101512682--101512915 Score: 254
Period size: 108 Copynumber: 2.2 Consensus size: 106
101512672 GTATTTTTTT
* * ** * *
101512682 TGGCCTTCTAATGGCCGGCACTAGGACGAGTATTTAAAAAAAAATTTGGTGCAGGCCTTGTAATA
1 TGGCCTTCTAATGGCCGGCACCAAGACGAGTATTTAAAAAAAAATTTAATGCAGGACTTCTAATA
** * *
101512747 GCCGGCACTAGTACGAAAAAAAATTCAAAATTTTTTGGTGC
66 GCCAACACCAGTACGAAAAAAAAGTCAAAATTTTTTGGTGC
* * * * ***
101512788 TGACATTGTAATGGCCGGCACCAATACGAGTATTTAAAAAAAGAAAATTTAATTTTGGACTTCTA
1 TGGCCTTCTAATGGCCGGCACCAAGACGAGTATTT--AAAAA-AAAATTTAATGCAGGACTTCTA
* *
101512853 ATGGCCAACACCAGTACG-AAAAAAAGTCAAAATTTTTTTGTGC
63 ATAGCCAACACCAGTACGAAAAAAAAGTCAAAATTTTTTGGTGC
*
101512896 TGGCCTTCTAATGGACGGCA
1 TGGCCTTCTAATGGCCGGCA
101512916 TCATTACAAA
Statistics
Matches: 102, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
106 29 0.28
108 44 0.43
109 29 0.28
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (106 bp):
TGGCCTTCTAATGGCCGGCACCAAGACGAGTATTTAAAAAAAAATTTAATGCAGGACTTCTAATA
GCCAACACCAGTACGAAAAAAAAGTCAAAATTTTTTGGTGC
Found at i:101513151 original size:17 final size:17
Alignment explanation
Indices: 101513131--101513181 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
101513121 TTAATATTTA
101513131 CAAAAATAACCCAAGTT
1 CAAAAATAACCCAAGTT
*
101513148 CAAAAACAA--C-A---
1 CAAAAATAACCCAAGTT
101513159 CAAAAATAACCCAAGTT
1 CAAAAATAACCCAAGTT
101513176 CAAAAA
1 CAAAAA
101513182 CAATCACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 12
0.65 0.05 0.30
Matches are distributed among these distances:
11 8 0.31
13 1 0.04
14 2 0.08
15 1 0.04
17 14 0.54
ACGTcount: A:0.61, C:0.24, G:0.04, T:0.12
Consensus pattern (17 bp):
CAAAAATAACCCAAGTT
Found at i:101513164 original size:29 final size:29
Alignment explanation
Indices: 101513130--101513194 Score: 123
Period size: 28 Copynumber: 2.3 Consensus size: 29
101513120 TTTAATATTT
101513130 ACAAAAATAACCCAAGTTCAAAAACAA-C
1 ACAAAAATAACCCAAGTTCAAAAACAATC
101513158 ACAAAAATAACCCAAGTTCAAAAACAATC
1 ACAAAAATAACCCAAGTTCAAAAACAATC
101513187 ACAAAAAT
1 ACAAAAAT
101513195 GACCTAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 27 0.75
29 9 0.25
ACGTcount: A:0.62, C:0.23, G:0.03, T:0.12
Consensus pattern (29 bp):
ACAAAAATAACCCAAGTTCAAAAACAATC
Found at i:101515931 original size:46 final size:48
Alignment explanation
Indices: 101515862--101516007 Score: 127
Period size: 53 Copynumber: 3.0 Consensus size: 48
101515852 CACATCACAC
** * *
101515862 ACCGAAGCCATAGCCTTGCCATGGTCTTACAC-GATTCACA-TATCAT
1 ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTATCAT
* *
101515908 ACCGAAGCCATATCCCAGACATGGTCTTATACGGAATCACATTATCACATTAT
1 ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTAT--C---AT
* * * *
101515961 ACCGATGTCATAGCCCAG-CTATGGTCTTATACGGAGTCACATTATCA
1 ACCGAAGCCATAGCCCAGAC-ATGGTCTTACACGGAATCACATTATCA
101516008 CATTACAATG
Statistics
Matches: 82, Mismatches: 10, Indels: 14
0.77 0.09 0.13
Matches are distributed among these distances:
46 27 0.33
47 7 0.09
48 4 0.05
50 1 0.01
51 1 0.01
52 1 0.01
53 41 0.50
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (48 bp):
ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTATCAT
Found at i:101515978 original size:53 final size:53
Alignment explanation
Indices: 101515897--101516047 Score: 187
Period size: 53 Copynumber: 2.8 Consensus size: 53
101515887 CTTACACGAT
* *
101515897 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
101515952 TCACATTATACCGATGTCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
* ** * *
101516005 TCACATTACAATGATGCCATAGCCCAGCTATCGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
101516048 GCGCACTTAT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
52 1 0.01
53 77 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:101518276 original size:103 final size:104
Alignment explanation
Indices: 101518097--101518361 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
101518087 AACCGTTATT
* * * *
101518097 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
101518162 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
101518200 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
101518264 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
101518304 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
101518362 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:101518723 original size:30 final size:29
Alignment explanation
Indices: 101518689--101518753 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
101518679 TAATCCACCA
101518689 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
101518719 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
101518749 CCCAA
1 CCCAA
101518754 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:101518727 original size:31 final size:30
Alignment explanation
Indices: 101518696--101518753 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
101518686 CCACCCAACT
101518696 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
101518726 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
101518754 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:101525748 original size:26 final size:26
Alignment explanation
Indices: 101525718--101525767 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
101525708 CCAATGAACT
*
101525718 GGGGAATCAGCACTTAGCAACCCCTC
1 GGGGAATCAGCACATAGCAACCCCTC
101525744 GGGGAATCAGCACATAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
101525768 CTTTCACATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.34, G:0.24, T:0.12
Consensus pattern (26 bp):
GGGGAATCAGCACATAGCAACCCCTC
Found at i:101525759 original size:102 final size:102
Alignment explanation
Indices: 101525583--101525845 Score: 393
Period size: 103 Copynumber: 2.6 Consensus size: 102
101525573 AACCGTTATT
* * * * *
101525583 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGAATCAGCACTTAGCAACCCCTTGGGGGAA
1 GGTGGATATCGCACTTAGCACCACCAATGAATGGGGAATCAGCACTTAGCAACCCC-TCGGGGAA
** *
101525648 TCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
65 TCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
101525685 GGTGGATATCGCACTTAGCACCACCAATGAACTGGGGAATCAGCACTTAGCAACCCCTCGGGGAA
1 GGTGGATATCGCACTTAGCACCACCAATGAA-TGGGGAATCAGCACTTAGCAACCCCTCGGGGAA
101525750 TCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 TCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
101525788 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAAT-GGGGAATCAGCACTTAGCAACCCCT
101525846 TTATGTACAA
Statistics
Matches: 147, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
102 58 0.39
103 89 0.61
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (102 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATGGGGAATCAGCACTTAGCAACCCCTCGGGGAAT
CAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:101526206 original size:30 final size:29
Alignment explanation
Indices: 101526172--101526236 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
101526162 TAATCCACCA
101526172 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
101526202 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
101526232 CCCAA
1 CCCAA
101526237 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:101526210 original size:31 final size:30
Alignment explanation
Indices: 101526179--101526236 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
101526169 CCACCCAACT
101526179 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
101526209 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
101526237 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Done.