Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 31 of 311
Found at i:8913113 original size:26 final size:26
Alignment explanation
Indices: 8913076--8913128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8913066 AGTGGTACTT
*
8913076 AAACTATCATTCCGTTACCCGGTTCA
1 AAACTATCATTCCGTTACCCAGTTCA
*
8913102 AAACTATTATTCCGTTACCCAGTTCA
1 AAACTATCATTCCGTTACCCAGTTCA
8913128 A
1 A
8913129 CCTTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.32
Consensus pattern (26 bp):
AAACTATCATTCCGTTACCCAGTTCA
Found at i:8923176 original size:21 final size:21
Alignment explanation
Indices: 8923152--8923191 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8923142 AACCAAATTT
8923152 TATATAAAATATAAAAAATCA
1 TATATAAAATATAAAAAATCA
* *
8923173 TATATAATATATAATAAAT
1 TATATAAAATATAAAAAAT
8923192 TTTAAACAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (21 bp):
TATATAAAATATAAAAAATCA
Found at i:8923182 original size:26 final size:25
Alignment explanation
Indices: 8923127--8923190 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 25
8923117 TTTAAAAAAA
* *
8923127 AATATAAATTAAAAAAACCAAATTT
1 AATATAAAATAAAAAAACCAAATAT
* * *
8923152 TATATAAAATATAAAAAATCATATAT
1 AATATAAAATA-AAAAAACCAAATAT
*
8923178 AATATATAATAAA
1 AATATAAAATAAA
8923191 TTTTAAACAA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
25 11 0.35
26 20 0.65
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (25 bp):
AATATAAAATAAAAAAACCAAATAT
Found at i:8923288 original size:27 final size:30
Alignment explanation
Indices: 8923243--8923302 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 30
8923233 AAAATCAAAT
*
8923243 ATTATATAAATATTGAAAT-TTA-A-AAAA
1 ATTATATAAATATTAAAATATTATATAAAA
8923270 ATTATATAAA-ATTAAAAATATTATATAAAA
1 ATTATATAAATATT-AAAATATTATATAAAA
8923300 ATT
1 ATT
8923303 TAAATTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 3 0.11
27 14 0.50
28 3 0.11
29 1 0.04
30 7 0.25
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (30 bp):
ATTATATAAATATTAAAATATTATATAAAA
Found at i:8923307 original size:19 final size:19
Alignment explanation
Indices: 8923262--8923299 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8923252 ATATTGAAAT
*
8923262 TTAAAAAAATTATATAAAA
1 TTAAAAATATTATATAAAA
8923281 TTAAAAATATTATATAAAA
1 TTAAAAATATTATATAAAA
8923300 ATTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TTAAAAATATTATATAAAA
Found at i:8923311 original size:13 final size:14
Alignment explanation
Indices: 8923273--8923372 Score: 57
Period size: 14 Copynumber: 7.1 Consensus size: 14
8923263 TAAAAAAATT
*
8923273 ATATAAAATTAAAA
1 ATATTAAATTAAAA
*
8923287 ATATTATA-TAAAA
1 ATATTAAATTAAAA
8923300 AT-TTAAATTAAAA
1 ATATTAAATTAAAA
8923313 A-ATCTAAAATTATAAA
1 ATAT-T-AAATTA-AAA
* *
8923329 ACATATAAATTGAAA
1 ATAT-TAAATTAAAA
* *
8923344 ATTTTAAA-AATAAA
1 ATATTAAATTA-AAA
*
8923358 ATATTATA-TAAAA
1 ATATTAAATTAAAA
8923371 AT
1 AT
8923373 TGAATTTTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
12 4 0.06
13 19 0.28
14 21 0.31
15 11 0.16
16 9 0.13
17 3 0.04
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.34
Consensus pattern (14 bp):
ATATTAAATTAAAA
Found at i:8923379 original size:32 final size:33
Alignment explanation
Indices: 8923284--8923380 Score: 79
Period size: 34 Copynumber: 2.8 Consensus size: 33
8923274 TATAAAATTA
* * *
8923284 AAAATATTATATAAAAATTTAAATTAAAAAATCT
1 AAAATATTATATAAAAATTGAATTTTAAAAA-CT
* * *
8923318 AAAATTATAAAACATATAAATTGAAAATTTTAAAAA-T
1 AAAA-TAT--TATATAAAAATTG--AATTTTAAAAACT
8923355 AAAATATTATATAAAAATTGAATTTT
1 AAAATATTATATAAAAATTGAATTTT
8923381 TTCATAATTT
Statistics
Matches: 49, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
32 6 0.12
34 14 0.29
35 3 0.06
36 3 0.06
37 14 0.29
39 9 0.18
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (33 bp):
AAAATATTATATAAAAATTGAATTTTAAAAACT
Found at i:8923496 original size:20 final size:20
Alignment explanation
Indices: 8923471--8923519 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
8923461 AATTTATATA
8923471 TGTTTTGGATGAACTTTGTC
1 TGTTTTGGATGAACTTTGTC
*
8923491 TGTTTTGGATGAAGTTTGTC
1 TGTTTTGGATGAACTTTGTC
*
8923511 TATTTTGGA
1 TGTTTTGGA
8923520 AATTTAGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.16, C:0.06, G:0.27, T:0.51
Consensus pattern (20 bp):
TGTTTTGGATGAACTTTGTC
Found at i:8933544 original size:25 final size:25
Alignment explanation
Indices: 8933508--8933623 Score: 78
Period size: 25 Copynumber: 4.6 Consensus size: 25
8933498 AATATCAGGT
8933508 AGCTCTAT-AGAGCTATTAATCGGAA
1 AGCTC-ATGAGAGCTATTAATCGGAA
** * *
8933533 AGCTTGTGAGAGCCATATAAT-GGGA
1 AGCTCATGAGAGCTAT-TAATCGGAA
* * *
8933558 TGCTCATGAGAGCTAAATAA-AGGAA
1 AGCTCATGAGAGCT-ATTAATCGGAA
* *
8933583 AGCTCGTGAGAGACTATT-ATCGGGA
1 AGCTCATGAGAG-CTATTAATCGGAA
*
8933608 CGCTCATGAGAGCTAT
1 AGCTCATGAGAGCTAT
8933624 GGTGTTTCCG
Statistics
Matches: 68, Mismatches: 17, Indels: 13
0.69 0.17 0.13
Matches are distributed among these distances:
24 6 0.09
25 55 0.81
26 7 0.10
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.24
Consensus pattern (25 bp):
AGCTCATGAGAGCTATTAATCGGAA
Found at i:8933571 original size:50 final size:49
Alignment explanation
Indices: 8933516--8933623 Score: 128
Period size: 50 Copynumber: 2.2 Consensus size: 49
8933506 GTAGCTCTAT
* * * *
8933516 AGAGCTATTAATCGGAAAGCTTGTGAGAGCCATATAAT-GGGATGCTCATG
1 AGAGCTATTAA-AGGAAAGCTCGTGAGAGAC-TATAATCGGGACGCTCATG
* *
8933566 AGAGCTAAATAAAGGAAAGCTCGTGAGAGACTATTATCGGGACGCTCATG
1 AGAGCT-ATTAAAGGAAAGCTCGTGAGAGACTATAATCGGGACGCTCATG
8933616 AGAGCTAT
1 AGAGCTAT
8933624 GGTGTTTCCG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
49 6 0.12
50 39 0.80
51 4 0.08
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (49 bp):
AGAGCTATTAAAGGAAAGCTCGTGAGAGACTATAATCGGGACGCTCATG
Found at i:8938310 original size:44 final size:44
Alignment explanation
Indices: 8938262--8938351 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
8938252 CATAAAAGAG
* *
8938262 TGAAAACAATGAAGTTAGAGAAATGAGTTGTACTAACAAATGAA
1 TGAAAACAATGAAGTTAGAGAAATGAATTGTACTAACAAACGAA
* * *
8938306 TGAAAACGATGAAGTTAGAGAAATGAATTGTATTCACAAACGAA
1 TGAAAACAATGAAGTTAGAGAAATGAATTGTACTAACAAACGAA
8938350 TG
1 TG
8938352 CATTTTCATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.48, C:0.08, G:0.21, T:0.23
Consensus pattern (44 bp):
TGAAAACAATGAAGTTAGAGAAATGAATTGTACTAACAAACGAA
Found at i:8939892 original size:21 final size:21
Alignment explanation
Indices: 8939868--8939923 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
8939858 GCAGCTGGAC
8939868 TTGATGAAGAGGAGCTTTTGT
1 TTGATGAAGAGGAGCTTTTGT
8939889 TTGATGAAGAGGAGCTTTTGT
1 TTGATGAAGAGGAGCTTTTGT
*
8939910 TTGATCAAGAGGAG
1 TTGATGAAGAGGAG
8939924 GTTAATATTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.27, C:0.05, G:0.34, T:0.34
Consensus pattern (21 bp):
TTGATGAAGAGGAGCTTTTGT
Found at i:8941440 original size:17 final size:15
Alignment explanation
Indices: 8941413--8941451 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
8941403 ATATAAGAAC
*
8941413 ATTTTATTATTAAATT
1 ATTTTAATATT-AATT
8941429 ATATTTAATATTAATT
1 AT-TTTAATATTAATT
8941445 ATTTTAA
1 ATTTTAA
8941452 ATTGTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.24
16 8 0.38
17 8 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTTAATATTAATT
Found at i:8941654 original size:59 final size:58
Alignment explanation
Indices: 8941590--8942028 Score: 166
Period size: 59 Copynumber: 7.3 Consensus size: 58
8941580 ATTATTTTAA
8941590 ATTTTATTA-AATCATATATTTTAATTAAAATATTTTTAATATTAATTACTTCAAATTAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATTTTTAATATTAATTA-TTCAAATTAT
* * * *** * * *
8941649 ATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATGTTGATTATT--AA-GA-
1 ATTTTATAGAATCATATATT-TTA-ATTA--AAA-T-AT-TTTTAATATTAATTATTCAAATTAT
*
8941710 ATTTTATTA-AATTATATATTTTAATTAAAATATTTTTAATATTAATTAATTCAAATTAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATTTTTAATATTAATT-ATTCAAATTAT
* * * ** * ** * ** * * *
8941769 ATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATT-TTGATTATTAAGA
1 ATTTTATAGAATCATATATTTTAATTAAAATATTTTTA-ATATTAATTATTCA-AATT-A-T
* * * *
8941830 ATTTTATTA-AATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATTTTTAATATTAATTAT-TCAAATTAT
* * * * *** * *
8941889 CTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATT-TT-TAA-GA-
1 ATTTTATAGAATCATATATT-TTAATT-A--AAA-T-AT-TTTTAATATTAATTATTCAAATTAT
* * * * *
8941950 ATTTTACTA-AATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATTTTTAATATTAATTAT-TCAAATTAT
*
8942009 ATTTTATAGTATCATATATT
1 ATTTTATAGAATCATATATT
8942029 ATGATTTGAG
Statistics
Matches: 269, Mismatches: 74, Indels: 74
0.65 0.18 0.18
Matches are distributed among these distances:
54 18 0.07
55 8 0.03
56 3 0.01
57 9 0.03
58 13 0.05
59 77 0.29
60 29 0.11
61 63 0.23
62 10 0.04
63 10 0.04
64 3 0.01
65 7 0.03
66 19 0.07
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (58 bp):
ATTTTATAGAATCATATATTTTAATTAAAATATTTTTAATATTAATTATTCAAATTAT
Found at i:8941714 original size:120 final size:120
Alignment explanation
Indices: 8941589--8942118 Score: 852
Period size: 120 Copynumber: 4.4 Consensus size: 120
8941579 AATTATTTTA
* * *
8941589 AATTTTATTAAATCATATATTTTAATTAAAATATTTTTAATATTAATTACT-TCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTA-TGTCAAATTATATTT
* *
8941653 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATGTTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
8941709 AATTTTATTAAATTATATATTTTAATTAAAATATTTTTAATATTAATTAAT-TCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT-ATGTCAAATTATATTT
* *
8941773 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATTTTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
8941829 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTCAAATTATATTTT
* *
8941894 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* * *
8941949 AATTTTACTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTCAAATTATATTTT
8942014 ATAGTATCATATATTATGATTTGAGTAAATTCAT-TAAG-ATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
8942067 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATTATTATGT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGT
8942119 TTAAATATAA
Statistics
Matches: 391, Mismatches: 17, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
118 63 0.16
119 6 0.02
120 321 0.82
121 1 0.00
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTCAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:8941830 original size:16 final size:15
Alignment explanation
Indices: 8941809--8941838 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8941799 TAAATTCATA
8941809 TAAGAATTTTGATTAT
1 TAAGAATTTT-ATTAT
8941825 TAAGAATTTTATTA
1 TAAGAATTTTATTA
8941839 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (15 bp):
TAAGAATTTTATTAT
Found at i:8941858 original size:18 final size:17
Alignment explanation
Indices: 8941830--8941864 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8941820 ATTATTAAGA
*
8941830 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8941847 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8941865 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8941984 original size:16 final size:16
Alignment explanation
Indices: 8941963--8942009 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
8941953 TTACTAAATT
8941963 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
8941979 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
8941994 AT-TATGTTAAATTATA
1 ATATAT-TTTAATTATA
8942010 TTTTATAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:8941989 original size:15 final size:15
Alignment explanation
Indices: 8941959--8942009 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
8941949 AATTTTACTA
8941959 AATTAT-ATAT-TTT
1 AATTATAATATATTT
8941972 AATTATAATATATTT
1 AATTATAATATATTT
*
8941987 AATAATAAT-TATGTT
1 AATTATAATATAT-TT
8942002 AAATTATA
1 -AATTATA
8942010 TTTTATAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 6 0.19
14 7 0.22
15 13 0.41
16 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
AATTATAATATATTT
Found at i:8942085 original size:59 final size:58
Alignment explanation
Indices: 8941662--8942087 Score: 195
Period size: 59 Copynumber: 7.1 Consensus size: 58
8941652 TTATAGTATC
* *
8941662 ATATATTATGATTTTAGTAAATTCATATAAGAATGTTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGA-TTTAGTAAATTCAT-TAAG-ATATTAATTATTAAGAATTTTATTAAATT
* * * * * * *
8941723 ATATATT-TTAATTA--AAATAT-TTTTA-ATATTAATTAATTCAAATTATATTTTA-TAGTATC
1 ATATATTATGATTTAGTAAAT-TCATTAAGATATTAATT-ATT--AA-GA-ATTTTATTA-AATT
* *
8941782 ATATATTATGATTTTAGTAAATTCATATAAGAATTTTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGA-TTTAGTAAATTCAT-TAAG-ATATTAATTATTAAGAATTTTATTAAATT
* * * * * * *
8941843 ATATATT-TTAATTA--AAATAT-ATTTA-ATAATAATTATGTTA-AATTATCTTTTATAGTATC
1 ATATATTATGATTTAGTAAAT-TCATTAAGATATTAATTAT-TAAGAATT-T-TATTA-A--ATT
* *
8941902 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAGAATTTTACTAAATT
1 ATATATTATGATTT-AGTAAATTCAT-TAAG-ATATTAATTATTAAGAATTTTATTAAATT
* * * * * * *
8941963 ATATATT-TTAATTA-T-AATAT-ATTTA-ATAATAATTATGTTAAATTATATTTTA-TAGTATC
1 ATATATTATGATTTAGTAAAT-TCATTAAGATATTAATTA--TT-AA-GA-ATTTTATTA-AATT
*
8942022 ATATATTATGATTTGAGTAAATTCATTAAGATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTT-AGTAAATTCATTAAGATATTAATTATTAAGAATTTTATTAAATT
8942081 ATATATT
1 ATATATT
8942088 TTAATTATAA
Statistics
Matches: 267, Mismatches: 52, Indels: 94
0.65 0.13 0.23
Matches are distributed among these distances:
54 27 0.10
55 6 0.02
56 12 0.04
57 21 0.08
58 10 0.04
59 61 0.23
60 21 0.08
61 38 0.14
62 9 0.03
63 21 0.08
64 15 0.06
65 6 0.02
66 20 0.07
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (58 bp):
ATATATTATGATTTAGTAAATTCATTAAGATATTAATTATTAAGAATTTTATTAAATT
Found at i:8942348 original size:45 final size:44
Alignment explanation
Indices: 8942248--8942357 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 44
8942238 TTTTCCATTA
8942248 TGCTATTACACCTCTATT-C----CATTCAACCAAACATAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACATAAGAT
* * *
8942287 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGT-TGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACA-TAAGA-T
8942332 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
8942358 CCTCTATTCC
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
39 16 0.27
40 1 0.02
44 16 0.27
45 26 0.44
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACATAAGAT
Found at i:8942357 original size:16 final size:16
Alignment explanation
Indices: 8942336--8942405 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
8942326 TTGATTTGCT
*
8942336 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
8942352 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
8942368 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
8942384 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
8942400 AATACA
1 ATTACA
8942406 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:8942959 original size:13 final size:13
Alignment explanation
Indices: 8942941--8942965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8942931 GAGAAATTAC
8942941 TAAATAAGAATAT
1 TAAATAAGAATAT
8942954 TAAATAAGAATA
1 TAAATAAGAATA
8942966 AATTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (13 bp):
TAAATAAGAATAT
Found at i:8953219 original size:55 final size:55
Alignment explanation
Indices: 8953135--8953253 Score: 193
Period size: 55 Copynumber: 2.2 Consensus size: 55
8953125 CAATAGGTCT
* * *
8953135 TCATATAGGGTTCAGGTATGGTTTAAGTTGGAAATGGTGTTTATATTCCTATGAC
1 TCATATAGGGTACAGGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATGAC
* *
8953190 TCATATAGGGTACATGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATTAC
1 TCATATAGGGTACAGGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATGAC
8953245 TCATATAGG
1 TCATATAGG
8953254 CCAATTAGCA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.39
Consensus pattern (55 bp):
TCATATAGGGTACAGGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATGAC
Found at i:8955315 original size:4 final size:4
Alignment explanation
Indices: 8955306--8955331 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8955296 AAAGGCAAGC
8955306 ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT
8955332 CAACACGTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:8958811 original size:24 final size:24
Alignment explanation
Indices: 8958779--8958827 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8958769 CCAAACTATG
8958779 ACTTTTATATGCAATTATATTGTA
1 ACTTTTATATGCAATTATATTGTA
8958803 ACTTTTATATGCAATTATATTGTA
1 ACTTTTATATGCAATTATATTGTA
8958827 A
1 A
8958828 TTATGATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.49
Consensus pattern (24 bp):
ACTTTTATATGCAATTATATTGTA
Found at i:8961400 original size:43 final size:43
Alignment explanation
Indices: 8961336--8961434 Score: 162
Period size: 43 Copynumber: 2.3 Consensus size: 43
8961326 CATAGGATTC
* *
8961336 CGATATGTGATTTCGTGTAAGACCACGTTTGGGACGTTGGCAT
1 CGATATGTGATTTCATATAAGACCACGTTTGGGACGTTGGCAT
*
8961379 CGATATGTGATTTCATATAAGACCATGTTTGGGACGTTGGCAT
1 CGATATGTGATTTCATATAAGACCACGTTTGGGACGTTGGCAT
*
8961422 CGATTTGTGATTT
1 CGATATGTGATTT
8961435 ACGTGTAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.36
Consensus pattern (43 bp):
CGATATGTGATTTCATATAAGACCACGTTTGGGACGTTGGCAT
Found at i:8961511 original size:86 final size:85
Alignment explanation
Indices: 8961396--8961555 Score: 187
Period size: 85 Copynumber: 1.9 Consensus size: 85
8961386 TGATTTCATA
* ** * * ** *
8961396 TAAGACCATGTTTGGGACGTTGGCATCGAT-TTGTGATTTACGTGTAATACCATGTCTGGGACAT
1 TAAGACCATGTCTGGGACAATGGCATCGATATT-TGA-TTACATGTAAGACCACATCCGGGACAT
*
8961460 TGGTGTTGTATATGGTTTCGTG
64 TGGCGTTGTATATGGTTTCGTG
* * *
8961482 TAAGACCCTGTCTGGGACAATGGCTTCGATATTTGATTACATGTAAGACCACATCCGGGACGTTG
1 TAAGACCATGTCTGGGACAATGGCATCGATATTTGATTACATGTAAGACCACATCCGGGACATTG
8961547 GCGTTGTAT
66 GCGTTGTAT
8961556 GAGTTTATGA
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
85 31 0.51
86 28 0.46
87 2 0.03
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (85 bp):
TAAGACCATGTCTGGGACAATGGCATCGATATTTGATTACATGTAAGACCACATCCGGGACATTG
GCGTTGTATATGGTTTCGTG
Found at i:8975881 original size:18 final size:18
Alignment explanation
Indices: 8975855--8975889 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8975845 TAGTCAAACG
*
8975855 AATCGAATTATTTGAATT
1 AATCAAATTATTTGAATT
8975873 AATCAAATTATTTGAAT
1 AATCAAATTATTTGAAT
8975890 CAACTCGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (18 bp):
AATCAAATTATTTGAATT
Found at i:8976109 original size:21 final size:22
Alignment explanation
Indices: 8976085--8976135 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
8976075 AATATCCCCC
*
8976085 CCCCCAA-TTTTACTATCTCAA
1 CCCCCAAGTTTTACTACCTCAA
*
8976106 CCCCCAATGTTTTACTCCCTCAA
1 CCCCCAA-GTTTTACTACCTCAA
8976129 CCCCCAA
1 CCCCCAA
8976136 AACATTTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 7 0.27
23 19 0.73
ACGTcount: A:0.25, C:0.45, G:0.02, T:0.27
Consensus pattern (22 bp):
CCCCCAAGTTTTACTACCTCAA
Found at i:8976162 original size:19 final size:19
Alignment explanation
Indices: 8976129--8976167 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
8976119 ACTCCCTCAA
8976129 CCCCCAAAACATTTTACTTT
1 CCCCCAAAACATTTTA-TTT
8976149 CCCCCAAAAC-TTTTATTT
1 CCCCCAAAACATTTTATTT
8976167 C
1 C
8976168 TCACCTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
20 10 0.53
ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36
Consensus pattern (19 bp):
CCCCCAAAACATTTTATTT
Found at i:8978063 original size:19 final size:18
Alignment explanation
Indices: 8978039--8978077 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8978029 CCTAGTGGTC
*
8978039 CTTGGAGACAGTGTTCGCA
1 CTTGGAG-CAGTGTTCACA
*
8978058 CTTGGAGGAGTGTTCACA
1 CTTGGAGCAGTGTTCACA
8978076 CT
1 CT
8978078 AAGAAGCGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (18 bp):
CTTGGAGCAGTGTTCACA
Found at i:8980394 original size:20 final size:18
Alignment explanation
Indices: 8980348--8980403 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
8980338 CAGATAATTC
8980348 ATAACAAATTTTAAAAAA
1 ATAACAAATTTTAAAAAA
*
8980366 AT-ACAAAATATTTTAAAAA
1 ATAAC-AAAT-TTTAAAAAA
8980385 ATCAACAAA-TTTAAAAAA
1 AT-AACAAATTTTAAAAAA
8980403 A
1 A
8980404 GTTTAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
17 2 0.06
18 15 0.47
19 10 0.31
20 3 0.09
21 2 0.06
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (18 bp):
ATAACAAATTTTAAAAAA
Found at i:8980403 original size:18 final size:19
Alignment explanation
Indices: 8980350--8980403 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
8980340 GATAATTCAT
8980350 AACAAATTTTAAAAAAATAC
1 AACAAA-TTTAAAAAAATAC
*
8980370 AA-AATATTTTAAAAAAT-C
1 AACAA-ATTTAAAAAAATAC
8980388 AACAAATTTAAAAAAA
1 AACAAATTTAAAAAAA
8980404 GTTTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 13 0.43
19 14 0.47
20 3 0.10
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (19 bp):
AACAAATTTAAAAAAATAC
Found at i:8982000 original size:29 final size:28
Alignment explanation
Indices: 8981928--8982082 Score: 148
Period size: 29 Copynumber: 5.3 Consensus size: 28
8981918 GGTGTATTAG
*
8981928 CGACCATCGAATATGAAAAGGGATGGTTT
1 CGACCATC-AATATGAAAAGGGATGGTTA
* ** * *
8981957 TGAATATCTATTATGAAAAGGGATGGTGA
1 CGACCATC-AATATGAAAAGGGATGGTTA
*
8981986 CGACCATCAACTATGAAAAGGGATGGTGA
1 CGACCATCAA-TATGAAAAGGGATGGTTA
* * *
8982015 CGACCATCGATTAATGAAAATGGATGGTTT
1 CGACCATC-AAT-ATGAAAAGGGATGGTTA
**
8982045 CGACCATCGAATATGAAAAGGGACAGTTA
1 CGACCATC-AATATGAAAAGGGATGGTTA
8982074 CGACCATCA
1 CGACCATCA
8982083 TTTAGCACAC
Statistics
Matches: 103, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
28 2 0.02
29 75 0.73
30 26 0.25
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (28 bp):
CGACCATCAATATGAAAAGGGATGGTTA
Found at i:8982051 original size:59 final size:58
Alignment explanation
Indices: 8981928--8982081 Score: 184
Period size: 59 Copynumber: 2.6 Consensus size: 58
8981918 GGTGTATTAG
** ** *
8981928 CGACCATCGAATATGAAAAGGGATGGTTTTGAATATCTATTATGAAAAGGGATGGTGA
1 CGACCATCGAATATGAAAAGGGATGGTTACGACCATCGATTATGAAAAGGGATGGTGA
* * **
8981986 CGACCATC-AACTATGAAAAGGGATGGTGACGACCATCGATTAATGAAAATGGATGGTTT
1 CGACCATCGAA-TATGAAAAGGGATGGTTACGACCATCGATT-ATGAAAAGGGATGGTGA
**
8982045 CGACCATCGAATATGAAAAGGGACAGTTACGACCATC
1 CGACCATCGAATATGAAAAGGGATGGTTACGACCATC
8982082 ATTTAGCACA
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
57 2 0.02
58 32 0.40
59 45 0.56
60 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.23
Consensus pattern (58 bp):
CGACCATCGAATATGAAAAGGGATGGTTACGACCATCGATTATGAAAAGGGATGGTGA
Found at i:8984321 original size:25 final size:25
Alignment explanation
Indices: 8984293--8984376 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 25
8984283 TATGTAAACT
*
8984293 GGAAGCTCTTTCGAGCCATATAACG
1 GGAAGCTCATTCGAGCCATATAACG
* *** *
8984318 GGAAGCTCAATCGAGTTGTATATCG
1 GGAAGCTCATTCGAGCCATATAACG
* *
8984343 AGAAGCTCATGCGAGCCATA-AATCG
1 GGAAGCTCATTCGAGCCATATAA-CG
8984368 GGAAGCTCA
1 GGAAGCTCA
8984377 AGAGAGTCAT
Statistics
Matches: 44, Mismatches: 14, Indels: 2
0.73 0.23 0.03
Matches are distributed among these distances:
24 1 0.02
25 43 0.98
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (25 bp):
GGAAGCTCATTCGAGCCATATAACG
Found at i:8984391 original size:25 final size:25
Alignment explanation
Indices: 8984339--8984410 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
8984329 CGAGTTGTAT
* * *
8984339 ATCGAGAAGCTCATGCGAGCCATAA
1 ATCGGGAAGCTCAAGAGAGCCATAA
* *
8984364 ATCGGGAAGCTCAAGAGAGTCATTA
1 ATCGGGAAGCTCAAGAGAGCCATAA
**
8984389 ATCGGGAAGCTCGTGAGAGCCA
1 ATCGGGAAGCTCAAGAGAGCCA
8984411 AATATTGGGA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (25 bp):
ATCGGGAAGCTCAAGAGAGCCATAA
Found at i:8984398 original size:50 final size:50
Alignment explanation
Indices: 8984293--8984410 Score: 125
Period size: 50 Copynumber: 2.4 Consensus size: 50
8984283 TATGTAAACT
* * **
8984293 GGAAGCTCTTTCGAGCCATATAACGGGAAGCTCAATCGAGTTGTATATCG
1 GGAAGCTCATGCGAGCCATATAACGGGAAGCTCAAGAGAGTTGTATATCG
*
8984343 AGAAGCTCATGCGAGCCATA-AATCGGGAAGCTCAAGAGAGTCAT-TA-ATCG
1 GGAAGCTCATGCGAGCCATATAA-CGGGAAGCTCAAGAGAGT--TGTATATCG
* *
8984393 GGAAGCTCGTGAGAGCCA
1 GGAAGCTCATGCGAGCCA
8984411 AATATTGGGA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
49 2 0.04
50 52 0.91
51 2 0.04
52 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (50 bp):
GGAAGCTCATGCGAGCCATATAACGGGAAGCTCAAGAGAGTTGTATATCG
Found at i:8985353 original size:23 final size:23
Alignment explanation
Indices: 8985327--8985378 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
8985317 CCGTGTACGG
8985327 TGGCCGACGGCGGCCGGCGACGT
1 TGGCCGACGGCGGCCGGCGACGT
8985350 TGGCCGACGGCGGCCGGCGACGT
1 TGGCCGACGGCGGCCGGCGACGT
8985373 TGGCCG
1 TGGCCG
8985379 GCGGTGATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.08, C:0.35, G:0.48, T:0.10
Consensus pattern (23 bp):
TGGCCGACGGCGGCCGGCGACGT
Found at i:8985970 original size:27 final size:27
Alignment explanation
Indices: 8985913--8985972 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
8985903 TTTGCCTTTT
* *
8985913 TTATATTATTTATTATTGTATTTGTCG
1 TTATATTATTTATTATTGTATGTGTCA
* *
8985940 TTATATTA-TTATTATTATTATGTGTTA
1 TTATATTATTTATTATT-GTATGTGTCA
8985967 TTATAT
1 TTATAT
8985973 ATATCTTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (27 bp):
TTATATTATTTATTATTGTATGTGTCA
Found at i:8986196 original size:9 final size:9
Alignment explanation
Indices: 8986182--8986207 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8986172 TATAATATAG
8986182 GTATATATT
1 GTATATATT
8986191 GTATATATT
1 GTATATATT
8986200 GTATATAT
1 GTATATAT
8986208 ATTATGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.54
Consensus pattern (9 bp):
GTATATATT
Found at i:8986531 original size:23 final size:21
Alignment explanation
Indices: 8986494--8986535 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
8986484 TATTACTATA
8986494 ACTATTATTTATTAGTATTTT
1 ACTATTATTTATTAGTATTTT
8986515 ACTATTACTATTATTAGTATT
1 ACTATTA-T-TTATTAGTATT
8986536 ATTTTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 1 0.05
23 11 0.58
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (21 bp):
ACTATTATTTATTAGTATTTT
Found at i:8986541 original size:27 final size:25
Alignment explanation
Indices: 8986480--8986541 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 25
8986470 TTATACGTTC
*
8986480 TTATTATTACTATAACTATTATTTA
1 TTATTTTTACTATAACTATTATTTA
*
8986505 TTAGTATTTTACTATTACTATTATTAGTA
1 TTA-T-TTTTACTATAACTATTATT--TA
8986534 TTATTTTT
1 TTATTTTT
8986542 TTTAAATCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 3 0.10
26 1 0.03
27 21 0.68
28 1 0.03
29 5 0.16
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (25 bp):
TTATTTTTACTATAACTATTATTTA
Found at i:8986665 original size:26 final size:26
Alignment explanation
Indices: 8986611--8986670 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
8986601 ATATGTATGG
*
8986611 TGTATATTCTTAATATTATATATTGTA
1 TGTATATTCTTAATA-TATATATTATA
*
8986638 TGTATTTTCTTAATA-ACTATATTATA
1 TGTATATTCTTAATATA-TATATTATA
8986664 TGTATAT
1 TGTATAT
8986671 ATATAGTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 14 0.48
27 14 0.48
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (26 bp):
TGTATATTCTTAATATATATATTATA
Found at i:8986712 original size:20 final size:22
Alignment explanation
Indices: 8986667--8986728 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 22
8986657 TATTATATGT
8986667 ATATATATAGTATGTACGTATTTTTA
1 ATATATATA-TATGTA--T-TTTTTA
8986693 ATAT-TAT-TATGTATTTTTTA
1 ATATATATATATGTATTTTTTA
8986713 ATATATATATATGTAT
1 ATATATATATATGTAT
8986729 GTGTGTATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
20 10 0.29
21 4 0.12
22 7 0.21
23 6 0.18
25 3 0.09
26 4 0.12
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (22 bp):
ATATATATATATGTATTTTTTA
Found at i:8987029 original size:27 final size:27
Alignment explanation
Indices: 8986999--8987051 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
8986989 ATATTATATA
*
8986999 TATTTTTAATACTA-TGTATATATTTTT
1 TATTCTTAATACTACT-TATATATTTTT
* *
8987026 TATTCTTATTATTACTTATATATTTT
1 TATTCTTAATACTACTTATATATTTT
8987052 AATACATACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (27 bp):
TATTCTTAATACTACTTATATATTTTT
Found at i:8993404 original size:12 final size:12
Alignment explanation
Indices: 8993387--8993472 Score: 63
Period size: 12 Copynumber: 7.2 Consensus size: 12
8993377 TTTTTTGTTG
*
8993387 TTTATATTTTTA
1 TTTATATTATTA
8993399 TTTATATTATTA
1 TTTATATTATTA
*
8993411 -TTAGTATCATTA
1 TTTA-TATTATTA
8993423 -TTATTATTATTA
1 TTTA-TATTATTA
* **
8993435 TCTCCATTATTA
1 TTTATATTATTA
8993447 -TTATTATTATTA
1 TTTA-TATTATTA
8993459 -TTATTATTATTA
1 TTTA-TATTATTA
8993471 TT
1 TT
8993473 ATTATTCTCT
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
11 4 0.07
12 54 0.90
13 2 0.03
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:8993517 original size:20 final size:21
Alignment explanation
Indices: 8993492--8993531 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8993482 TTGTTATATT
*
8993492 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
8993512 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
8993532 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:8993551 original size:3 final size:3
Alignment explanation
Indices: 8993403--8993536 Score: 112
Period size: 3 Copynumber: 44.7 Consensus size: 3
8993393 TTTTTATTTA
* *
8993403 TAT TAT TAT TAG TAT CAT TAT TAT TAT TAT TAT CTCCAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT TAT
* * * *
8993451 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-C TCT TGT TA- TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
8993497 TAT TGT TA- TAT TAT CAC TAT TTT TCT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8993537 CTACAAATAT
Statistics
Matches: 104, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
2 5 0.05
3 95 0.91
4 1 0.01
5 1 0.01
6 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:8993684 original size:3 final size:3
Alignment explanation
Indices: 8993676--8993729 Score: 54
Period size: 3 Copynumber: 18.0 Consensus size: 3
8993666 TTTCTCTGTT
* * * * * *
8993676 TTA TTA TTA TTA TTA ATA TCA TTA TTA ATA TTA ATA TTA TTT TTA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8993724 TTA TTA
1 TTA TTA
8993730 ACATATTTTT
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:8993701 original size:18 final size:18
Alignment explanation
Indices: 8993678--8993722 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
8993668 TCTCTGTTTT
8993678 ATTATTATTATTAATATC
1 ATTATTATTATTAATATC
* *
8993696 ATTATTAATATTAATATT
1 ATTATTATTATTAATATC
*
8993714 ATTTTTATT
1 ATTATTATT
8993723 TTTATTAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTATTATTATTAATATC
Found at i:8993842 original size:15 final size:15
Alignment explanation
Indices: 8993822--8993852 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8993812 TATTATTTTC
8993822 TATTTATTACTATTA
1 TATTTATTACTATTA
8993837 TATTTATTACTATTA
1 TATTTATTACTATTA
8993852 T
1 T
8993853 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:8993959 original size:15 final size:15
Alignment explanation
Indices: 8993941--8993978 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
8993931 CCCACTTAGC
8993941 TATTATTACTATTAT
1 TATTATTACTATTAT
*
8993956 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
8993971 AATTATTA
1 TATTATTA
8993979 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:8998347 original size:6 final size:6
Alignment explanation
Indices: 8998338--8998380 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
8998328 AGGCAAAGGT
8998338 AAAAA- AAAAAG -AAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
8998381 CCCAACAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
5 10 0.28
6 26 0.72
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:8998950 original size:4 final size:4
Alignment explanation
Indices: 8998943--8998977 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
8998933 CTTCAAAAAA
*
8998943 AAAG AAAG AAAG AAAG AAAG AAAA AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
8998978 TAGAAGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:8998960 original size:12 final size:12
Alignment explanation
Indices: 8998939--8998977 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
8998929 AGACCTTCAA
8998939 AAAAAAAGAAAG
1 AAAAAAAGAAAG
*
8998951 AAAGAAAGAAAG
1 AAAAAAAGAAAG
8998963 AAAAAAAGAAAG
1 AAAAAAAGAAAG
8998975 AAA
1 AAA
8998978 TAGAAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAG
Found at i:9000162 original size:64 final size:64
Alignment explanation
Indices: 9000061--9000182 Score: 217
Period size: 64 Copynumber: 1.9 Consensus size: 64
9000051 ATAACACATC
*
9000061 TAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCATATT
1 TAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCATCATATT
* *
9000125 TAGTTAGGAGCATTTGATTCATTTCAATCATTGCATCCTAATTATTTGGCATAAGCAT
1 TAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
9000183 AGATACATGA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (64 bp):
TAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCATCATATT
Found at i:9000308 original size:43 final size:43
Alignment explanation
Indices: 9000255--9000931 Score: 352
Period size: 43 Copynumber: 15.7 Consensus size: 43
9000245 ATCCACAAGC
* * *
9000255 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
* * *
9000298 CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
* * * * *
9000340 CTT-ATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAA--GACGAAGGGT
1 CTTAAAC-CCCTAAGCAGTAG-GGTAACAGGCT-GAATTTAC--A-GAT
* * * * *
9000384 CTTGACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGAC
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
* * *
9000427 CTTAAACCCCTAAGCAGTAGGAG-AACAGGTTGAATTCATAGAT
1 CTTAAACCCCTAAGCAGTAGG-GTAACAGGCTGAATTTACAGAT
* * * * ** **
9000470 CTT-ATCACCCTAAGCAGTAGGGAAACA-GATCAA-AGACGAAGGGC
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAGGCTGAATTTAC--A-GAT
* *
9000514 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
* * * * * * **
9000557 CTT-AACACCCTAAGCAGTAGGGAAACA-GATCAAAGGTGA-TGGG
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-GAA-TTTACAGAT
* * *
9000600 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-
1 C-TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
* *
9000643 CTTAAACCCCTAAGCAGTAGGGTAACAGGATGAATTCACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
** * * * ** **
9000686 CTT-GTCACCCTAAGCAGTAGGGAAACA-GATCAA-AGACGAAGGGC
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAGGCTGAATTTAC--A-GAT
* * *
9000730 CTTAACCCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAAT
1 CTTAA-ACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
* * * ** **
9000774 CTT-AACACCCTAAGCAGTAGAGAAACA-GATCGAAGGTA-ATGGG
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-GAATTTACA-GAT
* * * * *
9000817 CTTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGAC
1 C-TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
* *
9000861 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
* *
9000904 CTTATAA-CCCTAAGTAGTAGGGAAACAG
1 CTTA-AACCCCTAAGCAGTAGGGTAACAG
9000932 ATCGAATGCG
Statistics
Matches: 476, Mismatches: 114, Indels: 88
0.70 0.17 0.13
Matches are distributed among these distances:
41 6 0.01
42 85 0.18
43 227 0.48
44 111 0.23
45 36 0.08
46 9 0.02
47 2 0.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (43 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
Found at i:9000517 original size:87 final size:87
Alignment explanation
Indices: 9000426--9000670 Score: 316
Period size: 87 Copynumber: 2.8 Consensus size: 87
9000416 AATTTACAGA
* * * * *
9000426 CCTTAAACCCCTAAGCAGTAGGAG-AACAGGTTGAATTCATAGATCTTATCACCCTAAGCAGTAG
1 CCTTAACCCCCTAAGCAGTAGG-GTAACAGGCTAAATTCACAGATCTTAACACCCTAAGCAGTAG
9000490 GGAAACAGATCAAAGACGAAGGG
65 GGAAACAGATCAAAGACGAAGGG
*
9000513 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAGATCTTAACACCCTAAGCAGTAGG
** *
9000578 GAAACAGATCAAAGGTGATGGG
66 GAAACAGATCAAAGACGAAGGG
* * ** *
9000600 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-CTTAA-ACCCCTAAGCAGTAG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAGATCTTAACA-CCCTAAGCAGTAG
*
9000663 GGTAACAG
65 GGAAACAG
9000671 GATGAATTCA
Statistics
Matches: 142, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
85 1 0.01
86 26 0.18
87 115 0.81
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (87 bp):
CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAGATCTTAACACCCTAAGCAGTAGG
GAAACAGATCAAAGACGAAGGG
Found at i:9000539 original size:130 final size:129
Alignment explanation
Indices: 9000253--9000585 Score: 467
Period size: 130 Copynumber: 2.6 Consensus size: 129
9000243 GAATCCACAA
*
9000253 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTAAACCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
* * *
9000318 GGTAACAGACCGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGG
66 GGTAACAGACCGAATTGCAGATCTTATCACCCTAAGCAGTAGTGGAACAGATCAAAGACGAAGG
* * * ** *
9000382 GTCTTGACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
***
9000447 GAG-AACAGGTTGAATT-CATAGATCTTATCACCCTAAGCAGTAG-GGAAACAGATCAAAGACGA
66 G-GTAACAGACCGAATTGC--AGATCTTATCACCCTAAGCAGTAGTGG-AACAGATCAAAGACGA
9000509 AGG
127 AGG
9000512 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTT-AACACCCTAAGCAGTA
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAAC-CCCTAAGCAGTA
*
9000576 GGGAAACAGA
65 GGGTAACAGA
9000586 TCAAAGGTGA
Statistics
Matches: 178, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
128 1 0.01
129 75 0.42
130 102 0.57
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (129 bp):
GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
GGTAACAGACCGAATTGCAGATCTTATCACCCTAAGCAGTAGTGGAACAGATCAAAGACGAAGG
Found at i:9000685 original size:129 final size:131
Alignment explanation
Indices: 9000514--9000793 Score: 404
Period size: 129 Copynumber: 2.2 Consensus size: 131
9000504 GACGAAGGGC
* * *
9000514 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGATAAATTCACAGATCTTAACACCCTAAGCAGTAGGG
** * * * *
9000579 AAACAGATCAAAGGTGATGGGCTTTAA-CCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA
66 AAACAGATCAAAGACGAAGGGCCTTAACCCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAA
9000643 -
131 T
* **
9000643 CTTAAACCCCTAAGCAGTAGGGTAACAGGATGAATTCACAGATCTTGTCACCCTAAGCAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGATAAATTCACAGATCTTAACACCCTAAGCAGTAGGG
* *
9000708 AAACAGATCAAAGACGAAGGGCCTTAACCCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAA
66 AAACAGATCAAAGACGAAGGGCCTTAACCCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAA
9000773 T
131 T
9000774 CTT-AACACCCTAAGCAGTAG
1 CTTAAAC-CCCTAAGCAGTAG
9000794 AGAAACAGAT
Statistics
Matches: 134, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
129 82 0.61
130 36 0.27
131 16 0.12
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (131 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGATAAATTCACAGATCTTAACACCCTAAGCAGTAGGG
AAACAGATCAAAGACGAAGGGCCTTAACCCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAA
T
Found at i:9000742 original size:217 final size:217
Alignment explanation
Indices: 9000298--9000979 Score: 1043
Period size: 217 Copynumber: 3.1 Consensus size: 217
9000288 ATTTACAAAT
* * ** * * *
9000298 CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAA-TTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAG-G
* ** * *
9000362 G-AGCAGATCGAAGACGAAGGG-TCTTGACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAG
65 GAAACAGATCGAAGGTGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAG
*
9000425 ACCTTAAACCCCTAAGCAGTAGGAG-AACAGGTTGAATTCATAGATCTTATCACCCTAAGCAGTA
129 ACCTTAAACCCCTAAGCAGTAGG-GTAACAGGTTGAATTCACAGATCTTATCACCCTAAGCAGTA
9000489 GGGAAACAGATCAAAGACGAAGGGC
193 GGGAAACAGATCAAAGACGAAGGGC
9000514 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGGG
*
9000579 AAACAGATCAAAGGTGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-
66 AAACAGATCGAAGGTGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGAC
* *
9000643 CTTAAACCCCTAAGCAGTAGGGTAACAGGATGAATTCACAGATCTTGTCACCCTAAGCAGTAGGG
131 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATCACCCTAAGCAGTAGGG
9000708 AAACAGATCAAAGACGAAGGGC
196 AAACAGATCAAAGACGAAGGGC
* *
9000730 CTTAACCCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTAACACCCTAAGCAGTAGA
1 CTTAA-CCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGG
* *
9000795 GAAACAGATCGAAGGTAATGGGCTTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGA
65 GAAACAGATCGAAGGTGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA
* *
9000860 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATAACCCTAAGTAGTAGG
130 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATCACCCTAAGCAGTAGG
* * *
9000925 GAAACAGATCGAATG-CGATGAGC
195 GAAACAGATC-AAAGACGAAGGGC
*
9000948 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTA
9000980 GAAATCAAAT
Statistics
Matches: 430, Mismatches: 29, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
215 1 0.00
216 119 0.28
217 225 0.52
218 82 0.19
219 3 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (217 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGGG
AAACAGATCGAAGGTGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGAC
CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATCACCCTAAGCAGTAGGG
AAACAGATCAAAGACGAAGGGC
Found at i:9000871 original size:130 final size:130
Alignment explanation
Indices: 9000737--9000974 Score: 343
Period size: 130 Copynumber: 1.8 Consensus size: 130
9000727 GGCCTTAACC
*
9000737 CCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTA-ACACCCTAAGCAGTAGAGAAACA
1 CCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTATA-ACCCTAAGCAGTAGAGAAACA
* * *
9000801 GATCGAAGGTAATGGGCTTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGACCTTAA
65 GATCGAAGGCAATGAGCCTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGACCTTAA
9000866 A
130 A
* * * * *
9000867 CCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATAACCCTAAGTAGTAGGGAAACAG
1 CCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTATAACCCTAAGCAGTAGAGAAACAG
* * * *
9000932 ATCGAATGCGATGAGCCTTAACCCCCTAAGTAGTAGGGTAACA
66 ATCGAAGGCAATGAGCCTTAACCCCCTAAGCAGTAAGGTAACA
9000975 GGCTAGAAAT
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
130 93 0.99
131 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (130 bp):
CCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTATAACCCTAAGCAGTAGAGAAACAG
ATCGAAGGCAATGAGCCTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGACCTTAAA
Found at i:9000888 original size:87 final size:86
Alignment explanation
Indices: 9000643--9000888 Score: 298
Period size: 88 Copynumber: 2.8 Consensus size: 86
9000633 AATTTACAGA
* * * **
9000643 CTTAAACCCCTAAGCAGTAGGGTAACAGGATGAATTCACAGATCTTGTCACCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACACCCTAAGCAGTAGGG
9000708 AAACAGATCAAAGACGAAGGGC
66 AAACAGATCAAAGA-GAAGGGC
* * *
9000730 CTTAACCCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTAACACCCTAAGCAGTAGA
1 CTTAA-CCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACACCCTAAGCAGTAGG
*
9000795 GAAACAGATCGAAG-GTAATGGGC
65 GAAACAGATCAAAGAG-AA-GGGC
* * * * *
9000818 TTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGACCTTAA-ACCCCTAAGCAGTAGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACA-CCCTAAGCAGTAGG
*
9000882 GTAACAG
65 GAAACAG
9000889 GTTGAATTCA
Statistics
Matches: 137, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
86 2 0.01
87 63 0.46
88 72 0.53
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (86 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACACCCTAAGCAGTAGGG
AAACAGATCAAAGAGAAGGGC
Found at i:9001553 original size:17 final size:17
Alignment explanation
Indices: 9001531--9001569 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
9001521 GCCCAAATTA
9001531 AAAGTCCATTTACAAAC
1 AAAGTCCATTTACAAAC
9001548 AAAGTCCATTTACAAAC
1 AAAGTCCATTTACAAAC
9001565 AAAGT
1 AAAGT
9001570 TACCAGCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.49, C:0.21, G:0.08, T:0.23
Consensus pattern (17 bp):
AAAGTCCATTTACAAAC
Found at i:9002907 original size:20 final size:21
Alignment explanation
Indices: 9002882--9002921 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
9002872 TTGTTATATT
*
9002882 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
9002902 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
9002922 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:9002941 original size:3 final size:3
Alignment explanation
Indices: 9002814--9002926 Score: 61
Period size: 3 Copynumber: 37.7 Consensus size: 3
9002804 TTTTTATTTA
* * *
9002814 TAT TAT TAT TAG TAT CAT TAT TAT TAT TAT CTCCAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT TAT TAT
* * * * * * *
9002862 TAT TAT T-C TCT TGT TA- TAT TAC TAT TAT TGT TA- TAT TAT CAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
9002907 TTT TCT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
9002927 CTACAACTAT
Statistics
Matches: 81, Mismatches: 23, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
2 5 0.06
3 72 0.89
4 1 0.01
5 1 0.01
6 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:9003238 original size:15 final size:15
Alignment explanation
Indices: 9003218--9003248 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9003208 TATTATTTTC
9003218 TATTTATTACTATTA
1 TATTTATTACTATTA
9003233 TATTTATTACTATTA
1 TATTTATTACTATTA
9003248 T
1 T
9003249 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:9003255 original size:21 final size:21
Alignment explanation
Indices: 9003222--9003261 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9003212 ATTTTCTATT
* *
9003222 TATTACTATTATATTTATTAC
1 TATTACTAATATATATATTAC
*
9003243 TATTATTAATATATATATT
1 TATTACTAATATATATATT
9003262 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTACTAATATATATATTAC
Found at i:9003355 original size:15 final size:15
Alignment explanation
Indices: 9003337--9003374 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
9003327 CCCACTTAGC
9003337 TATTATTACTATTAT
1 TATTATTACTATTAT
*
9003352 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
9003367 AATTATTA
1 TATTATTA
9003375 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:9011924 original size:72 final size:68
Alignment explanation
Indices: 9011844--9011981 Score: 195
Period size: 72 Copynumber: 2.0 Consensus size: 68
9011834 TAATTAAATT
* * *
9011844 TAATCACTTTAATATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAAT
1 TAATCACTTTAATATTAAATTAATAAAATA-TTAT-T--AAGATAAACATTAAATTAAACTCAAT
9011909 ATTAAGA
62 ATTAAGA
**
9011916 TAATCACTTTAATATTAAATTAATAAAATATTATTAAGATAAGTATTAAATTAAACTCAATATTA
1 TAATCACTTTAATATTAAATTAATAAAATATTATTAAGATAAACATTAAATTAAACTCAATATTA
9011981 A
66 A
9011982 ATCTATTAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
68 27 0.44
70 1 0.02
71 4 0.07
72 29 0.48
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.39
Consensus pattern (68 bp):
TAATCACTTTAATATTAAATTAATAAAATATTATTAAGATAAACATTAAATTAAACTCAATATTA
AGA
Found at i:9011939 original size:20 final size:18
Alignment explanation
Indices: 9011892--9011940 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
9011882 CAAGATAAAC
9011892 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
9011909 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
9011929 ATTAAATTAATA
1 ATTAAATTAATA
9011941 AAATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:9013959 original size:27 final size:27
Alignment explanation
Indices: 9013911--9014070 Score: 159
Period size: 27 Copynumber: 5.9 Consensus size: 27
9013901 GCGAGGCTGC
* *
9013911 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
9013938 CAGATATTATGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
9013964 CCGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
9013991 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
9014018 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
9014045 TAGATAAATTGTGGCATAGCCACCAG
1 CAGAT--ATTGTGGCAGAGCCACCAG
9014071 TACGCTTCCT
Statistics
Matches: 112, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
26 9 0.08
27 82 0.73
28 19 0.17
29 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:9014005 original size:54 final size:54
Alignment explanation
Indices: 9013929--9014070 Score: 214
Period size: 54 Copynumber: 2.6 Consensus size: 54
9013919 GTGACGAAGT
* * *
9013929 CACCAGATACAGAT-ATTATGGCAGAGCCACCAGAACCGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
9013983 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
9014037 CACCAGATTAGATAAATTGTGGCATAGCCACCAG
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAG
9014071 TACGCTTCCT
Statistics
Matches: 81, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 5 0.06
54 56 0.69
55 20 0.25
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:9017153 original size:20 final size:20
Alignment explanation
Indices: 9017128--9017166 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
9017118 AATGCTATAC
*
9017128 AGAGGCACTGAAGTGCAAAA
1 AGAGGCACTAAAGTGCAAAA
9017148 AGAGGCACTAAAGTGCAAA
1 AGAGGCACTAAAGTGCAAA
9017167 CAAAGTCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.15, G:0.28, T:0.10
Consensus pattern (20 bp):
AGAGGCACTAAAGTGCAAAA
Found at i:9022546 original size:47 final size:48
Alignment explanation
Indices: 9022492--9022623 Score: 185
Period size: 47 Copynumber: 2.8 Consensus size: 48
9022482 TCACATCGAT
*
9022492 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTTATCTCAG
1 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCTCAG
* * * *
9022540 -AGTACCTATACCATGGCCCGTAGCCAAATGAAGGTAACTCCTCTCTG
1 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCTCAG
* * *
9022587 AACTACCTATACCATTGCTCGTAGCTAAATCAAGGTA
1 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTA
9022624 TAATTCGTAC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 42 0.58
48 31 0.42
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (48 bp):
AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCTCAG
Found at i:9025268 original size:131 final size:132
Alignment explanation
Indices: 9025133--9025383 Score: 380
Period size: 131 Copynumber: 1.9 Consensus size: 132
9025123 AAGATATGAA
* *
9025133 TGAAATTTTGAAGGGATGCTCGATTACTTTGGA-CAAACGCAAAATTGCAACCCAACACGTTAGG
1 TGAAATTTCGAAGGGATACTCGATTA-TTTGGAGCAAACGCAAAATTGCAACCCAACACGTTAGG
* ** *
9025197 GCACGATTCCGCGAATTGCTAAGTATCGAATCTCGTCTTCGTTTTGAAGAA-TTTTAAAAGACGC
65 GCACGATTCCGCGAATTGCCAAACATCGAATCTCATCTTCGTTTTGAAGAACTTTTAAAAGACGC
9025261 GAG
130 GAG
* * * *
9025264 TGAAATTTCGAAGTGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGG
1 TGAAATTTCGAAGGGATACTCGATTATTTGGAGCAAACGCAAAATTGCAACCCAACACGTTAGGG
*
9025329 CACGATTCCGCTAATTGCCAAACATCGAATCTCATCTTCGTTTTGAAGAACTTTT
66 CACGATTCCGCGAATTGCCAAACATCGAATCTCATCTTCGTTTTGAAGAACTTTT
9025384 GAATGAATGA
Statistics
Matches: 107, Mismatches: 11, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
130 5 0.05
131 98 0.92
132 4 0.04
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (132 bp):
TGAAATTTCGAAGGGATACTCGATTATTTGGAGCAAACGCAAAATTGCAACCCAACACGTTAGGG
CACGATTCCGCGAATTGCCAAACATCGAATCTCATCTTCGTTTTGAAGAACTTTTAAAAGACGCG
AG
Found at i:9031172 original size:131 final size:129
Alignment explanation
Indices: 9030929--9031262 Score: 352
Period size: 131 Copynumber: 2.6 Consensus size: 129
9030919 TAATTATTTA
* * * * * *
9030929 TTTAAAAACTCTTTAAACCG-AAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTAT
1 TTTAAAAACTCTTCAAAACGAAAGA-AATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTAT
* * *
9030993 TGTGCTTGTTACAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGT
64 CGTGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGT
9031058 -
129 C
** *
9031058 TTTCCAAAAACTCTTTGAAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
1 TTT--AAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
*** * * *
9031123 CGTG-TTGGGTTGTGATTTTTCATTTGTTCAAAACAATCGAA-GATTCCTTTAGAATTTCACTCA
64 CGTGCTT--GTTACAATTTCTCATTTGCTCAAAACAATCGAATG-TCCCTTTAGAATTTCACTCA
9031186 TGTC
126 TGTC
* * ** * *
9031190 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAA-TTCGGGAATCGTGCCCTATC
9031255 GTGCTTGT
65 GTGCTTGT
9031263 AATAGCCAAT
Statistics
Matches: 171, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
129 5 0.03
130 53 0.31
131 104 0.61
132 9 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (129 bp):
TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
TGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGTC
Found at i:9031936 original size:131 final size:129
Alignment explanation
Indices: 9031693--9032026 Score: 352
Period size: 131 Copynumber: 2.6 Consensus size: 129
9031683 TAATTATTTA
* * * * * *
9031693 TTTAAAAACTCTTTAAACCG-AAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTAT
1 TTTAAAAACTCTTCAAAACGAAAGA-AATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTAT
* * *
9031757 TGTGCTTGTTACAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGT
64 CGTGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGT
9031822 -
129 C
** *
9031822 TTTCCAAAAACTCTTTGAAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
1 TTT--AAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
*** * * *
9031887 CGTG-TTGGGTTGTGATTTTTCATTTGTTCAAAACAATCGAA-GATTCCTTTAGAATTTCACTCA
64 CGTGCTT--GTTACAATTTCTCATTTGCTCAAAACAATCGAATG-TCCCTTTAGAATTTCACTCA
9031950 TGTC
126 TGTC
* * ** * *
9031954 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAA-TTCGGGAATCGTGCCCTATC
9032019 GTGCTTGT
65 GTGCTTGT
9032027 AATAGCCAAT
Statistics
Matches: 171, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
129 5 0.03
130 53 0.31
131 104 0.61
132 9 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (129 bp):
TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
TGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGTC
Found at i:9032153 original size:764 final size:764
Alignment explanation
Indices: 9030685--9035266 Score: 9164
Period size: 764 Copynumber: 6.0 Consensus size: 764
9030675 TTTCCCATGT
9030685 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
1 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
9030750 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
66 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
9030815 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
131 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
9030880 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
196 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
9030945 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
261 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
9031010 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
326 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
9031075 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
391 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
9031140 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
456 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
9031205 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
521 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
9031270 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
586 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
9031335 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
651 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
9031400 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
716 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
9031449 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
1 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
9031514 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
66 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
9031579 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
131 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
9031644 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
196 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
9031709 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
261 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
9031774 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
326 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
9031839 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
391 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
9031904 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
456 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
9031969 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
521 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
9032034 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
586 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
9032099 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
651 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
9032164 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
716 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
9032213 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
1 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
9032278 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
66 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
9032343 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
131 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
9032408 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
196 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
9032473 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
261 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
9032538 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
326 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
9032603 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
391 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
9032668 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
456 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
9032733 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
521 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
9032798 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
586 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
9032863 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
651 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
9032928 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
716 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
9032977 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
1 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
9033042 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
66 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
9033107 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
131 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
9033172 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
196 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
9033237 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
261 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
9033302 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
326 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
9033367 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
391 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
9033432 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
456 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
9033497 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
521 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
9033562 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
586 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
9033627 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
651 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
9033692 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
716 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
9033741 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
1 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
9033806 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
66 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
9033871 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
131 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
9033936 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
196 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
9034001 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
261 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
9034066 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
326 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
9034131 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
391 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
9034196 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
456 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
9034261 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
521 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
9034326 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
586 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
9034391 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
651 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
9034456 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
716 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
9034505 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
1 ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
9034570 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
66 AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
9034635 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
131 TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
9034700 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
196 TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
9034765 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
261 ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
9034830 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
326 CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
9034895 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
391 AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
9034960 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
456 TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
9035025 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
521 AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
9035090 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
586 AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
9035155 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
651 AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
9035220 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTA
716 ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTA
9035267 AAATTTTCAG
Statistics
Matches: 3818, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
764 3818 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (764 bp):
ATAATTGTAGTCGGGTTATATTTTTTAGGTTAGTTATATTTAATTATTTACTTTGTTAGTTGATT
AAATAAGACACATTATTCTCATTCATCAAGGTTTGTATCTTATGCGTGTACATTATCCCATATCA
TTGTTTTCCACTTGGTTTATGAAATGTGATTTTATAAAATCCGAATCTTTATAATTAATTTCGTC
TTATTTCAAGTCACATTAATGCATTTTAAGCTAGTTTTGTAATTATTTATTTAAAAACTCTTTAA
ACCGAAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTATTGTGCTTGTTACAATTT
CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTTTTCCAAAAACTCTTTG
AAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGTGATT
TTTCATTTGTTCAAAACAATCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCA
AAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATCGTGCTTGTAATAGCC
AATTTTGGCATGACCAATAAGAAACAAAAACCCAAATAAAGCAATTAAAAAGTCCCAAATAAGTA
AGGTCCATTTTACAAAATTTAAACCCACATCAGGCCCAAAACCCAATTTACAAACCAAACTCCAG
ACCCAATTACAAAGCCCAAAACAAGCTAACCTTAGCCCACCTGCTTAGA
Found at i:9032700 original size:131 final size:129
Alignment explanation
Indices: 9032457--9032790 Score: 352
Period size: 131 Copynumber: 2.6 Consensus size: 129
9032447 TAATTATTTA
* * * * * *
9032457 TTTAAAAACTCTTTAAACCG-AAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTAT
1 TTTAAAAACTCTTCAAAACGAAAGA-AATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTAT
* * *
9032521 TGTGCTTGTTACAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGT
64 CGTGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGT
9032586 -
129 C
** *
9032586 TTTCCAAAAACTCTTTGAAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
1 TTT--AAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
*** * * *
9032651 CGTG-TTGGGTTGTGATTTTTCATTTGTTCAAAACAATCGAA-GATTCCTTTAGAATTTCACTCA
64 CGTGCTT--GTTACAATTTCTCATTTGCTCAAAACAATCGAATG-TCCCTTTAGAATTTCACTCA
9032714 TGTC
126 TGTC
* * ** * *
9032718 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAA-TTCGGGAATCGTGCCCTATC
9032783 GTGCTTGT
65 GTGCTTGT
9032791 AATAGCCAAT
Statistics
Matches: 171, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
129 5 0.03
130 53 0.31
131 104 0.61
132 9 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (129 bp):
TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
TGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGTC
Found at i:9033464 original size:131 final size:129
Alignment explanation
Indices: 9033221--9033554 Score: 352
Period size: 131 Copynumber: 2.6 Consensus size: 129
9033211 TAATTATTTA
* * * * * *
9033221 TTTAAAAACTCTTTAAACCG-AAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTAT
1 TTTAAAAACTCTTCAAAACGAAAGA-AATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTAT
* * *
9033285 TGTGCTTGTTACAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGT
64 CGTGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGT
9033350 -
129 C
** *
9033350 TTTCCAAAAACTCTTTGAAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
1 TTT--AAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
*** * * *
9033415 CGTG-TTGGGTTGTGATTTTTCATTTGTTCAAAACAATCGAA-GATTCCTTTAGAATTTCACTCA
64 CGTGCTT--GTTACAATTTCTCATTTGCTCAAAACAATCGAATG-TCCCTTTAGAATTTCACTCA
9033478 TGTC
126 TGTC
* * ** * *
9033482 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAA-TTCGGGAATCGTGCCCTATC
9033547 GTGCTTGT
65 GTGCTTGT
9033555 AATAGCCAAT
Statistics
Matches: 171, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
129 5 0.03
130 53 0.31
131 104 0.61
132 9 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (129 bp):
TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
TGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGTC
Found at i:9034228 original size:131 final size:129
Alignment explanation
Indices: 9033985--9034318 Score: 352
Period size: 131 Copynumber: 2.6 Consensus size: 129
9033975 TAATTATTTA
* * * * * *
9033985 TTTAAAAACTCTTTAAACCG-AAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTAT
1 TTTAAAAACTCTTCAAAACGAAAGA-AATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTAT
* * *
9034049 TGTGCTTGTTACAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGT
64 CGTGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGT
9034114 -
129 C
** *
9034114 TTTCCAAAAACTCTTTGAAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
1 TTT--AAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
*** * * *
9034179 CGTG-TTGGGTTGTGATTTTTCATTTGTTCAAAACAATCGAA-GATTCCTTTAGAATTTCACTCA
64 CGTGCTT--GTTACAATTTCTCATTTGCTCAAAACAATCGAATG-TCCCTTTAGAATTTCACTCA
9034242 TGTC
126 TGTC
* * ** * *
9034246 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAA-TTCGGGAATCGTGCCCTATC
9034311 GTGCTTGT
65 GTGCTTGT
9034319 AATAGCCAAT
Statistics
Matches: 171, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
129 5 0.03
130 53 0.31
131 104 0.61
132 9 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (129 bp):
TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
TGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGTC
Found at i:9034992 original size:131 final size:129
Alignment explanation
Indices: 9034749--9035082 Score: 352
Period size: 131 Copynumber: 2.6 Consensus size: 129
9034739 TAATTATTTA
* * * * * *
9034749 TTTAAAAACTCTTTAAACCG-AAGACGATGTTCGATATTTGGTAATTCGCGGAATCATGCCCTAT
1 TTTAAAAACTCTTCAAAACGAAAGA-AATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTAT
* * *
9034813 TGTGCTTGTTACAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGT
64 CGTGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGT
9034878 -
129 C
** *
9034878 TTTCCAAAAACTCTTTGAAATGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
1 TTT--AAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
*** * * *
9034943 CGTG-TTGGGTTGTGATTTTTCATTTGTTCAAAACAATCGAA-GATTCCTTTAGAATTTCACTCA
64 CGTGCTT--GTTACAATTTCTCATTTGCTCAAAACAATCGAATG-TCCCTTTAGAATTTCACTCA
9035006 TGTC
126 TGTC
* * ** * *
9035010 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTGGGCAATTTGGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAA-TTCGGGAATCGTGCCCTATC
9035075 GTGCTTGT
65 GTGCTTGT
9035083 AATAGCCAAT
Statistics
Matches: 171, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
129 5 0.03
130 53 0.31
131 104 0.61
132 9 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (129 bp):
TTTAAAAACTCTTCAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
TGCTTGTTACAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGTC
Found at i:9036599 original size:17 final size:17
Alignment explanation
Indices: 9036577--9036616 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
9036567 TTGTTATATA
*
9036577 TATATTTCAAATTATTT
1 TATATTTCAAATTATTG
* *
9036594 TATATTTTAAGTTATTG
1 TATATTTCAAATTATTG
9036611 TATATT
1 TATATT
9036617 ATATATTTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (17 bp):
TATATTTCAAATTATTG
Found at i:9036721 original size:27 final size:28
Alignment explanation
Indices: 9036691--9036747 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 28
9036681 ATCATATATT
* *
9036691 TTAAACTCCT-TATTAATTATTTTTAAA
1 TTAAACTCATATATTAATTATTTTAAAA
* *
9036718 TT-AACTTATATATTATTTATTTTAAAA
1 TTAAACTCATATATTAATTATTTTAAAA
9036745 TTA
1 TTA
9036748 TTCATATATG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (28 bp):
TTAAACTCATATATTAATTATTTTAAAA
Found at i:9036723 original size:26 final size:27
Alignment explanation
Indices: 9036701--9036756 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
9036691 TTAAACTCCT
* *
9036701 TATTAATTATTTTTAAATTAACTTATA
1 TATTAATTATTTTAAAATTAACTCATA
* *
9036728 TATTATTTATTTTAAAATT-ATTCATA
1 TATTAATTATTTTAAAATTAACTCATA
9036754 TAT
1 TAT
9036757 GTCATTCTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (27 bp):
TATTAATTATTTTAAAATTAACTCATA
Found at i:9036818 original size:27 final size:26
Alignment explanation
Indices: 9036778--9036831 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
9036768 ATTTGCTTTG
*
9036778 TGTATTATAGATTTTAAACTTGTTTTA
1 TGTATTATACATTTTAAA-TTGTTTTA
*
9036805 TGTATTATTCATTTTAAATTGTTTTA
1 TGTATTATACATTTTAAATTGTTTTA
9036831 T
1 T
9036832 TGTTTACTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.59
Consensus pattern (26 bp):
TGTATTATACATTTTAAATTGTTTTA
Found at i:9046162 original size:40 final size:40
Alignment explanation
Indices: 9046107--9046184 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
9046097 AAACATTAAG
9046107 TAAAAAATAAAACAATTAATATTTAGATTCGGATTATAAA
1 TAAAAAATAAAACAATTAATATTTAGATTCGGATTATAAA
*
9046147 TAAAAAATACAACAATTAATATTTAGATTCGGATTATA
1 TAAAAAATAAAACAATTAATATTTAGATTCGGATTATA
9046185 GAAATACAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (40 bp):
TAAAAAATAAAACAATTAATATTTAGATTCGGATTATAAA
Found at i:9046343 original size:19 final size:20
Alignment explanation
Indices: 9046304--9046344 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
9046294 ATCAATACAA
*
9046304 TTCAATTTTACATTGAATAT
1 TTCAATTTTACATTCAATAT
*
9046324 TTCAATTTT-TATTCAATAT
1 TTCAATTTTACATTCAATAT
9046343 TT
1 TT
9046345 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTTACATTCAATAT
Found at i:9046916 original size:19 final size:20
Alignment explanation
Indices: 9046879--9046917 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
9046869 AATACTTATT
*
9046879 TATTATTTTATACATATGTA
1 TATTATTTTATACACATGTA
9046899 TATTATTTT-TACACATGTA
1 TATTATTTTATACACATGTA
9046918 CACTCAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (20 bp):
TATTATTTTATACACATGTA
Found at i:9047859 original size:38 final size:38
Alignment explanation
Indices: 9047814--9047890 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 38
9047804 GAATTTGTGA
* * *
9047814 ATAGTCCCGCATACTATCATAGCATAAAGACTTGGTGG
1 ATAGTCCCACAGACTATCATAGCACAAAGACTTGGTGG
* * *
9047852 ATAGTCCCACGGATTGTCATAGCACAAAGACTTGGTGG
1 ATAGTCCCACAGACTATCATAGCACAAAGACTTGGTGG
9047890 A
1 A
9047891 CTTATACATA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (38 bp):
ATAGTCCCACAGACTATCATAGCACAAAGACTTGGTGG
Found at i:9047915 original size:29 final size:29
Alignment explanation
Indices: 9047882--9047993 Score: 143
Period size: 29 Copynumber: 3.9 Consensus size: 29
9047872 AGCACAAAGA
* * **
9047882 CTTGGTGGACTTATACATATGGATTCATG
1 CTTGGTGAACTCATACATGCGGATTCATG
*
9047911 CTTGGTGAACTCATACATGCGGACTCATG
1 CTTGGTGAACTCATACATGCGGATTCATG
* *
9047940 CTTGATGAACTCATACATGCAGATTCATG
1 CTTGGTGAACTCATACATGCGGATTCATG
* *
9047969 CTTGGTAAACTCATACATGTGGATT
1 CTTGGTGAACTCATACATGCGGATT
9047994 TATACTCACA
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (29 bp):
CTTGGTGAACTCATACATGCGGATTCATG
Found at i:9048079 original size:28 final size:28
Alignment explanation
Indices: 9048019--9048079 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
9048009 TTCTTGCAAG
*
9048019 CTCTTGTATGAAAGATAGTCCCTACGAA
1 CTCTTGTATGAAAGATAATCCCTACGAA
*
9048047 TTCTTGCT-TGAAAGATAATCCCTACTG-A
1 CTCTTG-TATGAAAGATAATCCCTAC-GAA
9048075 CTCTT
1 CTCTT
9048080 CATATAGCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
28 26 0.93
29 2 0.07
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (28 bp):
CTCTTGTATGAAAGATAATCCCTACGAA
Found at i:9050049 original size:20 final size:21
Alignment explanation
Indices: 9050024--9050067 Score: 81
Period size: 20 Copynumber: 2.1 Consensus size: 21
9050014 AGGAGTTAGA
9050024 TTACATTTTAAC-TTTTTTAC
1 TTACATTTTAACTTTTTTTAC
9050044 TTACATTTTAACTTTTTTTAC
1 TTACATTTTAACTTTTTTTAC
9050065 TTA
1 TTA
9050068 AAAAATAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.25, C:0.14, G:0.00, T:0.61
Consensus pattern (21 bp):
TTACATTTTAACTTTTTTTAC
Found at i:9050398 original size:21 final size:21
Alignment explanation
Indices: 9050364--9050423 Score: 54
Period size: 20 Copynumber: 2.9 Consensus size: 21
9050354 TAAATAATTA
*
9050364 TAAAAAATAT-AGAAACTTAT
1 TAAAAATTATAAGAAACTTAT
*
9050384 TAAAAATTATAAG-AATTTAT
1 TAAAAATTATAAGAAACTTAT
*
9050404 TTAAAATCTATTAA-AAACTT
1 TAAAAAT-TA-TAAGAAACTT
9050424 GGACAAACAG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
20 21 0.66
21 4 0.12
22 7 0.22
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (21 bp):
TAAAAATTATAAGAAACTTAT
Found at i:9059492 original size:19 final size:19
Alignment explanation
Indices: 9059470--9059506 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
9059460 CCACTATCAC
9059470 CCACCGTAATCAAATTTGA
1 CCACCGTAATCAAATTTGA
*
9059489 CCACTGTAATCAAATTTG
1 CCACCGTAATCAAATTTG
9059507 TTATTAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (19 bp):
CCACCGTAATCAAATTTGA
Found at i:9062931 original size:54 final size:56
Alignment explanation
Indices: 9062844--9062954 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 56
9062834 AATTAGGAAT
*
9062844 TAATAAAATAAAATAATTGATTAATTAGG-TAATAATAATTGGATTAATAAAAATC
1 TAATAAAATAAAATAATTAATTAATTAGGATAATAATAATTGGATTAATAAAAATC
*
9062899 TAATAAAAT-AATTAATTAATTAATTAGGTAATAATAATAATTGGATTAATAAAAAT
1 TAATAAAATAAAATAATTAATTAATTAGG--ATAATAATAATTGGATTAATAAAAAT
9062955 ATATTAGTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
54 17 0.33
55 9 0.18
57 25 0.49
ACGTcount: A:0.55, C:0.01, G:0.08, T:0.36
Consensus pattern (56 bp):
TAATAAAATAAAATAATTAATTAATTAGGATAATAATAATTGGATTAATAAAAATC
Found at i:9064219 original size:19 final size:19
Alignment explanation
Indices: 9064195--9064247 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
9064185 ACTTGTATGC
*
9064195 ATGTGCGAACCCATAAGCT
1 ATGTGCAAACCCATAAGCT
9064214 ATGTGCAAACCCATAAGCT
1 ATGTGCAAACCCATAAGCT
9064233 ATGTGCAAACCCATA
1 ATGTGCAAACCCATA
9064248 TGAATGTGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (19 bp):
ATGTGCAAACCCATAAGCT
Found at i:9066925 original size:84 final size:84
Alignment explanation
Indices: 9066784--9066952 Score: 293
Period size: 84 Copynumber: 2.0 Consensus size: 84
9066774 ATGATAAGAG
* * * *
9066784 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGGTGTTGGAGCACTATTAAAATAAGTTGAA
1 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAA
9066849 AATATAAAAGAAGATAAGT
66 AATATAAAAGAAGATAAGT
*
9066868 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAT
1 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAA
9066933 AATATAAAAGAAGATAAGT
66 AATATAAAAGAAGATAAGT
9066952 A
1 A
9066953 GATTTATTCC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.43, C:0.05, G:0.21, T:0.31
Consensus pattern (84 bp):
AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAA
AATATAAAAGAAGATAAGT
Found at i:9067717 original size:29 final size:29
Alignment explanation
Indices: 9067685--9067742 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
9067675 GTATACGAAA
*
9067685 ATAGTACAACAAT-GCACTGAAGTGCATAT
1 ATAGAACAA-AATGGCACTGAAGTGCATAT
* *
9067714 ATAGAATAAGATGGCACTGAAGTGCATAT
1 ATAGAACAAAATGGCACTGAAGTGCATAT
9067743 TCAGAATAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (29 bp):
ATAGAACAAAATGGCACTGAAGTGCATAT
Found at i:9067957 original size:164 final size:164
Alignment explanation
Indices: 9067638--9067968 Score: 421
Period size: 164 Copynumber: 2.0 Consensus size: 164
9067628 TTTATTATTC
*
9067638 AATAGAGGCCCAACATAGACTTAACAAAACATATAAGGTATACGAAAATAGTACAACAATGCACT
1 AATAGAGGCCCAACATAGACTTAACAAAACATATAAGGTATACGAAAATAGTACAACAATGCACC
* * * * *
9067703 GAAGTGCATATATAGAATAAGATGGCACTGAAGTGCATATTCAGAATAGGATAACATTAAAATGC
66 GAAGTGCAAATACAGAACAAGATGGCACCGAAGTGCATATTCAGAATAGGACAACATTAAAATGC
* * * **
9067768 GTATTCAGAATAGGGAGTGCGCT-AAATTTTCCTT
131 GTATTCAAAACAGAGAGCACGCTAAAATTTT-CTT
** ** * *
9067802 AATAGAGGCCCAAGGTAGACTTAACAAAATGTATAAGGTATACGAAAATAGTACAATAATGTACC
1 AATAGAGGCCCAACATAGACTTAACAAAACATATAAGGTATACGAAAATAGTACAACAATGCACC
* ** * * * * *
9067867 GAAGTGCAAATACAGAACAGGATGGCACCGAAGTGTGTATTCAGAATAGGGCAGCATTGATATGT
66 GAAGTGCAAATACAGAACAAGATGGCACCGAAGTGCATATTCAGAATAGGACAACATTAAAATGC
9067932 GTATTCAAAACAGAGAGCACGCTAAAATTTTCTT
131 GTATTCAAAACAGAGAGCACGCTAAAATTTTCTT
9067966 AAT
1 AAT
9067969 GGCATGCCAT
Statistics
Matches: 141, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
164 134 0.95
165 7 0.05
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (164 bp):
AATAGAGGCCCAACATAGACTTAACAAAACATATAAGGTATACGAAAATAGTACAACAATGCACC
GAAGTGCAAATACAGAACAAGATGGCACCGAAGTGCATATTCAGAATAGGACAACATTAAAATGC
GTATTCAAAACAGAGAGCACGCTAAAATTTTCTT
Found at i:9068158 original size:26 final size:26
Alignment explanation
Indices: 9068129--9068178 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
9068119 CCAACTTTCT
* * *
9068129 TTAATACATATAACATATTTCACTAC
1 TTAATAAAAATAACATAATTCACTAC
*
9068155 TTAATAAAAATTACATAATTCACT
1 TTAATAAAAATAACATAATTCACT
9068179 CTACAACTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (26 bp):
TTAATAAAAATAACATAATTCACTAC
Found at i:9069428 original size:11 final size:11
Alignment explanation
Indices: 9069412--9069458 Score: 58
Period size: 11 Copynumber: 4.0 Consensus size: 11
9069402 ATTTTAATTG
9069412 AATAAAATATT
1 AATAAAATATT
9069423 AATAAATATATTAT
1 AATAAA-ATA-T-T
*
9069437 AATAAAATAAT
1 AATAAAATATT
9069448 AATAAAATATT
1 AATAAAATATT
9069459 CAACCAATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
11 17 0.55
12 3 0.10
13 4 0.13
14 7 0.23
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATAAAATATT
Found at i:9069444 original size:25 final size:24
Alignment explanation
Indices: 9069412--9069458 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
9069402 ATTTTAATTG
*
9069412 AATAAAATATTAATAAATATATTAT
1 AATAAAATAATAATAAA-ATATTAT
9069437 AATAAAATAATAATAAAATATT
1 AATAAAATAATAATAAAATATT
9069459 CAACCAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
AATAAAATAATAATAAAATATTAT
Found at i:9076837 original size:21 final size:22
Alignment explanation
Indices: 9076808--9076854 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
9076798 CAGAAGGAGT
*
9076808 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
9076830 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
9076851 GAGT
1 GAGT
9076855 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:9080364 original size:30 final size:31
Alignment explanation
Indices: 9080328--9080398 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
9080318 GGTTTCATTT
*
9080328 CAATCACTCAAC-TT-TTAAAAAATAACAAAA
1 CAATCACT-AACGTTATAAAAAAATAACAAAA
*
9080358 CAATCACTAACGTTATAAAAAAATGACAAAA
1 CAATCACTAACGTTATAAAAAAATAACAAAA
*
9080389 CAGTCACTAA
1 CAATCACTAA
9080399 TTAATAGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.08
30 10 0.28
31 23 0.64
ACGTcount: A:0.55, C:0.20, G:0.04, T:0.21
Consensus pattern (31 bp):
CAATCACTAACGTTATAAAAAAATAACAAAA
Found at i:9080457 original size:21 final size:21
Alignment explanation
Indices: 9080432--9080471 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
9080422 AACGGGACTG
9080432 CTGATGTGGCAAGTTAACTAA
1 CTGATGTGGCAAGTTAACTAA
*
9080453 CTGATGTGGCCAGTTAACT
1 CTGATGTGGCAAGTTAACT
9080472 TGCCACGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (21 bp):
CTGATGTGGCAAGTTAACTAA
Found at i:9082178 original size:33 final size:33
Alignment explanation
Indices: 9082141--9082218 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
9082131 TGGCCCTGCC
* * *
9082141 ATGGTCTTACACTCGTA-ATGTCATAACCCAGTT
1 ATGGTCTTACACTC-AAGATGCCATAACCCAGCT
*
9082174 ATGGTCTTATCA-TCAAGATGCCATAGCCCAGCT
1 ATGGTCTTA-CACTCAAGATGCCATAACCCAGCT
9082207 ATGGTCTTACAC
1 ATGGTCTTACAC
9082219 ATATACATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
32 3 0.08
33 33 0.87
34 2 0.05
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (33 bp):
ATGGTCTTACACTCAAGATGCCATAACCCAGCT
Found at i:9082275 original size:104 final size:101
Alignment explanation
Indices: 9082162--9082354 Score: 271
Period size: 104 Copynumber: 1.9 Consensus size: 101
9082152 CTCGTAATGT
* *
9082162 CATAACCCAGTTATGGTCTTATCATCAAGATGCCATAGCCCAGCTATGGTCTTACACATATACAT
1 CATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGCCTT--ACATATA-A-
* *
9082227 ATATTGCCATGGTCCAACC-TGGTCTTACATTCACGGTGC
62 ACACTGCCATGGTCCAACCATGGTCTTACATTCACGGTGC
* * * *
9082266 CATAACCCAGTTATGGTCTTTTCATTAAAATGCCATAGCCTAGCTATGGCCTTACATTTAAACAC
1 CATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGCCTTACATATAAACAC
9082331 TGCCATGGTCCAACCATGGTCTTA
66 TGCCATGGTCCAACCATGGTCTTA
9082355 ACTGTCAACT
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
100 17 0.21
101 9 0.11
102 6 0.08
104 48 0.60
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (101 bp):
CATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGCCTTACATATAAACAC
TGCCATGGTCCAACCATGGTCTTACATTCACGGTGC
Found at i:9083879 original size:21 final size:21
Alignment explanation
Indices: 9083853--9083893 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9083843 CAACGTGGCA
9083853 AGTTAACCGGCCACATCAGCT
1 AGTTAACCGGCCACATCAGCT
**
9083874 AGTTAACTTGCCACATCAGC
1 AGTTAACCGGCCACATCAGC
9083894 GGTCCCGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (21 bp):
AGTTAACCGGCCACATCAGCT
Found at i:9086254 original size:39 final size:39
Alignment explanation
Indices: 9086211--9086336 Score: 171
Period size: 39 Copynumber: 3.2 Consensus size: 39
9086201 GCGGGACTTT
* * * *
9086211 AGCCCGGACATATTTCCAGCACGTAGCCTGCGGACCTTA
1 AGCCCGGATATAATTCCAGCACATAGCCTGCGGACCCTA
**
9086250 AGCCCGTTTATAATTCCAGCACATAGCCTGCGGACCCTA
1 AGCCCGGATATAATTCCAGCACATAGCCTGCGGACCCTA
* *
9086289 AGTCCGGATATAATTCCAGCACATAGCCTACGGACCCTA
1 AGCCCGGATATAATTCCAGCACATAGCCTGCGGACCCTA
*
9086328 AGTCCGGAT
1 AGCCCGGAT
9086337 GAACATCACT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.21
Consensus pattern (39 bp):
AGCCCGGATATAATTCCAGCACATAGCCTGCGGACCCTA
Found at i:9086269 original size:78 final size:78
Alignment explanation
Indices: 9086180--9086329 Score: 178
Period size: 78 Copynumber: 1.9 Consensus size: 78
9086170 TTAAACCTGG
* * * * * *
9086180 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCG
1 TATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTACG
*
9086243 GACCTTAAGCCCGTT
64 GACCCTAAGCCCGTT
* * *
9086258 TATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTACGGA
1 TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTACGGA
9086323 CCCTAAG
66 CCCTAAG
9086330 TCCGGATGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
77 4 0.07
78 56 0.93
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.22
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTACGGA
CCCTAAGCCCGTT
Found at i:9094298 original size:39 final size:39
Alignment explanation
Indices: 9094241--9094392 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
9094231 CCGAACATAT
* * * *
9094241 TTCCAGCACGTAGTCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
9094280 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
9094319 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGAATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
9094358 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGAT
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGAT
9094393 GAACATCACT
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:9096883 original size:23 final size:23
Alignment explanation
Indices: 9096857--9096924 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 23
9096847 AGTATTGTGA
9096857 TATATGCTTAAATGTTATGTAAT
1 TATATGCTTAAATGTTATGTAAT
9096880 TATATG-----A-G-TATTGTAA-
1 TATATGCTTAAATGTTA-TGTAAT
*
9096896 TATATGCTTAAATGTTATGTGAT
1 TATATGCTTAAATGTTATGTAAT
9096919 TATATG
1 TATATG
9096925 TCTAATGAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 18
0.65 0.02 0.33
Matches are distributed among these distances:
16 8 0.23
17 6 0.17
18 1 0.03
21 1 0.03
22 5 0.14
23 14 0.40
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (23 bp):
TATATGCTTAAATGTTATGTAAT
Found at i:9096946 original size:39 final size:39
Alignment explanation
Indices: 9096690--9096943 Score: 314
Period size: 39 Copynumber: 6.5 Consensus size: 39
9096680 AACATGTTTT
*
9096690 TGAGT-TTCGTGATATATGCTTGAATGTTATGTAATTATA
1 TGAGTATT-GTGATATATGCTTGAATGTTATGTAACTATA
*
9096729 TGAGTATTGT-ATATATGCTTGAATGTTATGCAACTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTAACTATA
* **
9096767 TGAGTATTGTGATATATGCTTGAATTTTATGCGACTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTAACTATA
* ** *
9096806 TGAGTATTGTGATATATGTTTGAATGTTATGGGACTACA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTAACTATA
* *
9096845 TGAGTATTGTGATATATGCTTAAATGTTATGTAATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTAACTATA
* * * *
9096884 TGAGTATTGTAATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTAACTATA
** * *
9096923 TGTCTAATGAGATATATGCTT
1 TGAGTATTGTGATATATGCTT
9096944 AAAAGTGAGT
Statistics
Matches: 192, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
38 36 0.19
39 154 0.80
40 2 0.01
ACGTcount: A:0.30, C:0.06, G:0.20, T:0.44
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTAACTATA
Found at i:9098454 original size:3 final size:3
Alignment explanation
Indices: 9098446--9098552 Score: 56
Period size: 3 Copynumber: 35.7 Consensus size: 3
9098436 TTAATTTTAA
* * * * * * *
9098446 TAT TAT TAT TGT TGT TAT TAG TAA TAT TAT TAA TAT TAT TTT TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
9098494 TAT TAG TAC TAT TTT CTAT T-T TCT ATAT TTT TAT TAT TAG TAT TAT
1 TAT TAT TAT TAT TAT -TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
*
9098540 T-T CAT TAT TAT TA
1 TAT TAT TAT TAT TA
9098553 AATTATTGAA
Statistics
Matches: 77, Mismatches: 23, Indels: 8
0.71 0.21 0.07
Matches are distributed among these distances:
2 3 0.04
3 70 0.91
4 4 0.05
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:9098484 original size:33 final size:33
Alignment explanation
Indices: 9098442--9098506 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
9098432 CTAATTAATT
*
9098442 TTAATATTATTATTGTTGTTATTAGTAATATTA
1 TTAATATTATTATTATTGTTATTAGTAATATTA
* * *
9098475 TTAATATTATTTTTATTTTTATTAGTACTATT
1 TTAATATTATTATTATTGTTATTAGTAATATT
9098507 TTCTATTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.62
Consensus pattern (33 bp):
TTAATATTATTATTATTGTTATTAGTAATATTA
Found at i:9098496 original size:21 final size:22
Alignment explanation
Indices: 9098472--9098515 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
9098462 ATTAGTAATA
*
9098472 TTATTAATATTATTTT-TATTT
1 TTATTAATACTATTTTCTATTT
*
9098493 TTATTAGTACTATTTTCTATTT
1 TTATTAATACTATTTTCTATTT
9098515 T
1 T
9098516 CTATATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (22 bp):
TTATTAATACTATTTTCTATTT
Done.