Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 311 of 311
Found at i:101945873 original size:4 final size:4
Alignment explanation
Indices: 101945864--101945891 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
101945854 ATTGTTGTGG
101945864 TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA
101945892 GGATATACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:101946132 original size:24 final size:24
Alignment explanation
Indices: 101946086--101946132 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
101946076 AAGAGAGGTA
* * *
101946086 AAATCAATAAGAAAACCATTTTGT
1 AAATAAATAAGAAAAACAGTTTGT
*
101946110 AAATAAATAAGAAAAAGAGTTTG
1 AAATAAATAAGAAAAACAGTTTG
101946133 AAGTATAATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (24 bp):
AAATAAATAAGAAAAACAGTTTGT
Found at i:101946615 original size:110 final size:111
Alignment explanation
Indices: 101946422--101946650 Score: 388
Period size: 110 Copynumber: 2.1 Consensus size: 111
101946412 TCTCATATAC
* *
101946422 TTTAAATTAAAATATATGAAAAAGCTTGAAGGAGCTAATATGGATTGACTCAATTAAAAGAACTC
1 TTTAAATTAAAATATATGAAAAAGCTTGAAGAAGCTAATATGGATTGACCCAATTAAAAGAACTC
*
101946487 TCTTCCTATTATGTATTTATGATCACTAACA-CAAACTTAGATAAA
66 TCATCCTATTATGTATTTATGATCACTAACATCAAACTTAGATAAA
* *
101946532 TTTAAATTAAAATATATGAAAAAGCTTGAAGAAGCTAATATGGATTGGCCCAATTAAATGAACTC
1 TTTAAATTAAAATATATGAAAAAGCTTGAAGAAGCTAATATGGATTGACCCAATTAAAAGAACTC
*
101946597 TCATCCTATTATGTATTTATGATCACTAACATTAAACTTAGATAAA
66 TCATCCTATTATGTATTTATGATCACTAACATCAAACTTAGATAAA
*
101946643 TTTGAATT
1 TTTAAATT
101946651 GCCTACCCGC
Statistics
Matches: 111, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
110 91 0.82
111 20 0.18
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (111 bp):
TTTAAATTAAAATATATGAAAAAGCTTGAAGAAGCTAATATGGATTGACCCAATTAAAAGAACTC
TCATCCTATTATGTATTTATGATCACTAACATCAAACTTAGATAAA
Found at i:101951061 original size:3 final size:3
Alignment explanation
Indices: 101951053--101951082 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
101951043 ACTAAATGTG
*
101951053 TAA TAA TAA TAA TAA TCA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
101951083 AACAAGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:101963024 original size:23 final size:24
Alignment explanation
Indices: 101962998--101963045 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
101962988 TATTTTGTGT
101962998 TTATATATTGC-ATATAAAAATAA
1 TTATATATTGCAATATAAAAATAA
* *
101963021 TTATATTTTTCTAATATAAAAATAA
1 TTATATATTGC-AATATAAAAATAA
101963046 ATTAATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
25 12 0.57
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (24 bp):
TTATATATTGCAATATAAAAATAA
Found at i:101963103 original size:31 final size:31
Alignment explanation
Indices: 101963068--101963157 Score: 78
Period size: 31 Copynumber: 2.9 Consensus size: 31
101963058 ATTTATTTAA
* * *
101963068 ATGTATATAATTGAATCAAAATTAAAGTTTT
1 ATGTATATAATTGAACCAAAATCAAAATTTT
*
101963099 ATGTATA-AATTTGAACCACAATCAAAATTTT
1 ATGTATATAA-TTGAACCAAAATCAAAATTTT
* * *
101963130 ATATGTATAATT-ACACC-AAATTAAAATT
1 ATGTATATAATTGA-ACCAAAATCAAAATT
101963158 AATGTATTAA
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
30 12 0.25
31 34 0.71
32 2 0.04
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.38
Consensus pattern (31 bp):
ATGTATATAATTGAACCAAAATCAAAATTTT
Found at i:101963497 original size:12 final size:12
Alignment explanation
Indices: 101963480--101963512 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
101963470 CGGCCCGCCC
101963480 ATATTAATTTTT
1 ATATTAATTTTT
101963492 ATATT-ATTTTT
1 ATATTAATTTTT
101963503 ATA-TAATTTT
1 ATATTAATTTT
101963513 AAAAAATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:101963596 original size:30 final size:30
Alignment explanation
Indices: 101963560--101963620 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
101963550 CAATTTAACA
*
101963560 AGCAAATGTCTCTAAAATAATAACAAAATT
1 AGCAAATATCTCTAAAATAATAACAAAATT
* *
101963590 AGCAAATATCTTTAAAATAATAATAAAATT
1 AGCAAATATCTCTAAAATAATAACAAAATT
101963620 A
1 A
101963621 ACAATAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.30
Consensus pattern (30 bp):
AGCAAATATCTCTAAAATAATAACAAAATT
Found at i:101971525 original size:27 final size:27
Alignment explanation
Indices: 101971487--101971542 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
101971477 ATATTCTTTC
101971487 ATAGTTAACTTCAGAAACAACCAAGAA
1 ATAGTTAACTTCAGAAACAACCAAGAA
101971514 ATAGTTAACTTCAGAAACAACCAAGAA
1 ATAGTTAACTTCAGAAACAACCAAGAA
101971541 AT
1 AT
101971543 GCAACATACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.52, C:0.18, G:0.11, T:0.20
Consensus pattern (27 bp):
ATAGTTAACTTCAGAAACAACCAAGAA
Found at i:101981497 original size:32 final size:33
Alignment explanation
Indices: 101981435--101981496 Score: 85
Period size: 31 Copynumber: 1.9 Consensus size: 33
101981425 AAAAATATTT
*
101981435 AACATATATGAATTAATTTATTAATGAAAAATA
1 AACATATATGAATTAATTTATTAATAAAAAATA
101981468 AACA-ATAT-AATTCAATTT-TTAATAAAAAA
1 AACATATATGAATT-AATTTATTAATAAAAAA
101981497 AACTTCCGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 14 0.52
32 9 0.33
33 4 0.15
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.35
Consensus pattern (33 bp):
AACATATATGAATTAATTTATTAATAAAAAATA
Found at i:101987080 original size:17 final size:18
Alignment explanation
Indices: 101987048--101987081 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
101987038 AGAAAATGAA
*
101987048 AAAGAAAATTAAAAAGTG
1 AAAGAAAATAAAAAAGTG
101987066 AAAGAAAA-AAAAAAGT
1 AAAGAAAATAAAAAAGT
101987082 CAAGAAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.12
Consensus pattern (18 bp):
AAAGAAAATAAAAAAGTG
Found at i:101989283 original size:3 final size:3
Alignment explanation
Indices: 101989277--101989302 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
101989267 ATAATGACAA
101989277 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
101989303 AGGAACGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:102000528 original size:21 final size:19
Alignment explanation
Indices: 102000496--102000534 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
102000486 TGATTTAAAA
102000496 AAAAACATTATTATGATAAC
1 AAAAACATTATT-TGATAAC
*
102000516 AAAAATATATATTTGATAA
1 AAAAACAT-TATTTGATAA
102000535 TTTTAAACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAACATTATTTGATAAC
Found at i:102010699 original size:7 final size:7
Alignment explanation
Indices: 102010689--102010723 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
102010679 CATGTAACTC
102010689 GGGTTTA
1 GGGTTTA
102010696 GGGTTTA
1 GGGTTTA
*
102010703 GGATTTA
1 GGGTTTA
102010710 GGGTTTA
1 GGGTTTA
102010717 GGGTTTA
1 GGGTTTA
102010724 ATTCTATAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Found at i:102016984 original size:15 final size:16
Alignment explanation
Indices: 102016953--102016987 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
102016943 ATGTTTCTTT
102016953 AACAACTTCTGAAGAA
1 AACAACTTCTGAAGAA
*
102016969 AACAAGTTCT-AAGAA
1 AACAACTTCTGAAGAA
102016984 AACA
1 AACA
102016988 GAAAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.54, C:0.17, G:0.11, T:0.17
Consensus pattern (16 bp):
AACAACTTCTGAAGAA
Found at i:102017259 original size:30 final size:30
Alignment explanation
Indices: 102017225--102017285 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
102017215 ATTATAGCAA
102017225 TATAGAACTTGTATTTCAAGTTTTGAACAC
1 TATAGAACTTGTATTTCAAGTTTTGAACAC
102017255 TATAGAACTTGTATTTCAAGTTTTGAACAC
1 TATAGAACTTGTATTTCAAGTTTTGAACAC
102017285 T
1 T
102017286 GTACTAACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (30 bp):
TATAGAACTTGTATTTCAAGTTTTGAACAC
Found at i:102024880 original size:33 final size:33
Alignment explanation
Indices: 102024843--102024911 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
102024833 CTTCAGCCGC
102024843 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
* *
102024876 CGCATGCCCCTCAGCCTTGGCCACCACGCTCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
102024909 CGC
1 CGC
102024912 GTCTGACACT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.16, C:0.54, G:0.17, T:0.13
Consensus pattern (33 bp):
CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
Found at i:102026082 original size:22 final size:22
Alignment explanation
Indices: 102026038--102026111 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
102026028 CCATTACTAT
* * *
102026038 TATTATTATTATTCTTTTGTTA
1 TATTACTATTATTCTTATATTA
*
102026060 TATTACTATTATTGTTATA-T-
1 TATTACTATTATTCTTATATTA
* *
102026080 TATCACTATTTTTCTTACTATTA
1 TATTACTATTATTCTTA-TATTA
102026103 TTATTACTA
1 -TATTACTA
102026112 CAACTATTAT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
20 14 0.35
21 3 0.08
22 16 0.40
24 7 0.17
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (22 bp):
TATTACTATTATTCTTATATTA
Found at i:102026089 original size:20 final size:21
Alignment explanation
Indices: 102026064--102026103 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
102026054 TTGTTATATT
*
102026064 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
102026084 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
102026104 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:102026123 original size:3 final size:3
Alignment explanation
Indices: 102026014--102026108 Score: 52
Period size: 3 Copynumber: 31.7 Consensus size: 3
102026004 TTTTTATTTA
* * *
102026014 TAT TAT TAT TAT CTCCAT TAC TAT TAT TAT TAT TAT TCT T-T TGT TA-
1 TAT TAT TAT TAT -T--AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
102026060 TAT TAC TAT TAT TGT TA- TAT TAT CAC TAT TTT TCT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102026107 TA
1 TA
102026109 CTACAACTAT
Statistics
Matches: 69, Mismatches: 17, Indels: 12
0.70 0.17 0.12
Matches are distributed among these distances:
2 6 0.09
3 59 0.86
4 1 0.01
5 1 0.01
6 2 0.03
ACGTcount: A:0.27, C:0.11, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:102026296 original size:21 final size:20
Alignment explanation
Indices: 102026246--102026308 Score: 60
Period size: 21 Copynumber: 3.2 Consensus size: 20
102026236 TTCTTTTCTC
**
102026246 TATTTTATTACTATTATTAA
1 TATTTTATTACTATTATTTT
*
102026266 TATCATTATTACTATTATTTT
1 TAT-TTTATTACTATTATTTT
102026287 TATTTCTATT--T-TTATTTT
1 TATTT-TATTACTATTATTTT
102026305 TATT
1 TATT
102026309 AACATATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
18 11 0.30
19 1 0.03
20 4 0.11
21 21 0.57
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (20 bp):
TATTTTATTACTATTATTTT
Found at i:102026422 original size:15 final size:15
Alignment explanation
Indices: 102026402--102026432 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
102026392 TATTATTTTC
102026402 TATTTATTACTATTA
1 TATTTATTACTATTA
102026417 TATTTATTACTATTA
1 TATTTATTACTATTA
102026432 T
1 T
102026433 TAATATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:102030221 original size:36 final size:36
Alignment explanation
Indices: 102030181--102030251 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
102030171 TTTAGTATTC
*
102030181 ATTTTAT-AATTTATAAAA-TAATAATAATTTAATTTA
1 ATTTTATAAAATTATAAAAGT-ATAA-AATTTAATTTA
*
102030217 ATTTTTTAAAATTATAAAAGTATAAAATTTAATTT
1 ATTTTATAAAATTATAAAAGTATAAAATTTAATTT
102030252 CGATACCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 16 0.52
37 14 0.45
38 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (36 bp):
ATTTTATAAAATTATAAAAGTATAAAATTTAATTTA
Found at i:102039336 original size:3 final size:3
Alignment explanation
Indices: 102039328--102039363 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
102039318 GCTTGCTATA
* *
102039328 CTT CTT CTT CTT CTT CTT TTT CCT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
102039364 GGTGGTGGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:102040475 original size:40 final size:40
Alignment explanation
Indices: 102040417--102040498 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
102040407 ATAAATATAC
*
102040417 ACACACATACATATATATATATACGTAAATCGATTGAATA
1 ACACACATACATAAATATATATACGTAAATCGATTGAATA
* *
102040457 ACACACATACGTAAATATATATACGTAAATCTATTGAATA
1 ACACACATACATAAATATATATACGTAAATCGATTGAATA
102040497 AC
1 AC
102040499 GGGTATTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.48, C:0.16, G:0.07, T:0.29
Consensus pattern (40 bp):
ACACACATACATAAATATATATACGTAAATCGATTGAATA
Found at i:102045649 original size:13 final size:14
Alignment explanation
Indices: 102045631--102045659 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
102045621 CAAGAGTGTT
102045631 AAAAGTCAAA-AAA
1 AAAAGTCAAACAAA
102045644 AAAAGTCAAACAAA
1 AAAAGTCAAACAAA
102045658 AA
1 AA
102045660 CTAGTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.76, C:0.10, G:0.07, T:0.07
Consensus pattern (14 bp):
AAAAGTCAAACAAA
Found at i:102046290 original size:19 final size:19
Alignment explanation
Indices: 102046266--102046322 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 19
102046256 TTTTAAGAGA
102046266 TTAATAATTTCTAAAACAT
1 TTAATAATTTCTAAAACAT
*
102046285 TTAATAATTACTGAAAACAT
1 TTAATAATTTCT-AAAACAT
** *
102046305 GAAAGAATTT-TAAAACAT
1 TTAATAATTTCTAAAACAT
102046323 GAAAAGATGC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 7 0.22
19 12 0.38
20 13 0.41
ACGTcount: A:0.51, C:0.09, G:0.05, T:0.35
Consensus pattern (19 bp):
TTAATAATTTCTAAAACAT
Found at i:102046303 original size:20 final size:19
Alignment explanation
Indices: 102046266--102046304 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
102046256 TTTTAAGAGA
*
102046266 TTAATAATTTCTAAAACAT
1 TTAATAATTACTAAAACAT
102046285 TTAATAATTACTGAAAACAT
1 TTAATAATTACT-AAAACAT
102046305 GAAAGAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.49, C:0.10, G:0.03, T:0.38
Consensus pattern (19 bp):
TTAATAATTACTAAAACAT
Found at i:102046489 original size:32 final size:33
Alignment explanation
Indices: 102046453--102046514 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
102046443 CTTCTAAGAA
*
102046453 TTTAAATAATCAA-TATTAAAACATGAAATGCC
1 TTTAAAAAATCAATTATTAAAACATGAAATGCC
* *
102046485 TTTAAAAAATTAATTTTTAAAACATGAAAT
1 TTTAAAAAATCAATTATTAAAACATGAAAT
102046515 AATTACTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 11 0.42
33 15 0.58
ACGTcount: A:0.52, C:0.08, G:0.05, T:0.35
Consensus pattern (33 bp):
TTTAAAAAATCAATTATTAAAACATGAAATGCC
Found at i:102056706 original size:26 final size:26
Alignment explanation
Indices: 102056676--102056728 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
102056666 CAGGGATTGG
102056676 TGTTATAATCAACTTTCACATTTAAC
1 TGTTATAATCAACTTTCACATTTAAC
*
102056702 TGTTATAATCAACTTTCACGTTTAAC
1 TGTTATAATCAACTTTCACATTTAAC
102056728 T
1 T
102056729 TGTGATCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (26 bp):
TGTTATAATCAACTTTCACATTTAAC
Found at i:102058170 original size:13 final size:13
Alignment explanation
Indices: 102058154--102058179 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102058144 AATTCTTTGT
102058154 TAAAATTTTATGA
1 TAAAATTTTATGA
102058167 TAAAATTTTATGA
1 TAAAATTTTATGA
102058180 AGAATTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TAAAATTTTATGA
Found at i:102061089 original size:29 final size:29
Alignment explanation
Indices: 102061056--102061113 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
102061046 GCCCATGTAA
102061056 GTTCATATGGCTAAATTTAATGTTTTGAT
1 GTTCATATGGCTAAATTTAATGTTTTGAT
102061085 GTTCATATGGCTAAATTTAATGTTTTGAT
1 GTTCATATGGCTAAATTTAATGTTTTGAT
102061114 ATGAAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.48
Consensus pattern (29 bp):
GTTCATATGGCTAAATTTAATGTTTTGAT
Found at i:102061457 original size:47 final size:47
Alignment explanation
Indices: 102061403--102061502 Score: 139
Period size: 47 Copynumber: 2.1 Consensus size: 47
102061393 GAGATGCGAT
* * *
102061403 TATGTGCT-TCCGTATAAGACCATGTTTGAGATATGGCATCGGTGTGA
1 TATGTGCTAT-CGTATAAGACCATATCTGAGATATGGCATCAGTGTGA
* *
102061450 TATGTGCTATTGTATAAGACCATATCTGGGATATGGCATCAGTGTGA
1 TATGTGCTATCGTATAAGACCATATCTGAGATATGGCATCAGTGTGA
102061497 TATGTG
1 TATGTG
102061503 ATCCTTGTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 46 0.98
48 1 0.02
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (47 bp):
TATGTGCTATCGTATAAGACCATATCTGAGATATGGCATCAGTGTGA
Found at i:102061531 original size:46 final size:46
Alignment explanation
Indices: 102061416--102061571 Score: 149
Period size: 47 Copynumber: 3.3 Consensus size: 46
102061406 GTGCTTCCGT
* * *
102061416 ATAAGACCAT-GTTTGAGATATGGCATCGGTGTGATATGTGCTATTG
1 ATAAGACCATAG-TTGGGATATGGCATCAGTGTGATATGTGATATTG
*
102061462 TATAAGACCATA-TCTGGGATATGGCATCAGTGTGATATGTGATCCTTG
1 -ATAAGACCATAGT-TGGGATATGGCATCAGTGTGATATGTGAT-ATTG
* *
102061510 -TAAGACCATAGTTGGGTTATGGCTTCAGTGTGTAATATGTGACTATGTG
1 ATAAGACCATAGTTGGGATATGGCATCAGTGTG--ATATGTGA-TAT-TG
*
102061559 -CAAGACCATAGTT
1 ATAAGACCATAGTT
102061572 TTACTATGGC
Statistics
Matches: 93, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
46 29 0.31
47 37 0.40
48 12 0.13
49 15 0.16
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (46 bp):
ATAAGACCATAGTTGGGATATGGCATCAGTGTGATATGTGATATTG
Found at i:102064090 original size:38 final size:38
Alignment explanation
Indices: 102063975--102064094 Score: 143
Period size: 38 Copynumber: 3.1 Consensus size: 38
102063965 ATTTGATGTG
* *
102063975 TATCCGGGCTTAAAGACCCGCAAG-CTATATGCTGGTATTA
1 TATCCGGG-TTAAA-TCCCGCAAGCCTA-GTGCTGGTATTA
* * * * *
102064015 TATCCGGGTTAAATCCCGCAGGCTTCGTGTTGTTATTA
1 TATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA
102064053 TATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA
102064091 TATC
1 TATC
102064095 TGAGCTTAAA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
38 53 0.79
39 6 0.09
40 8 0.12
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA
Found at i:102073202 original size:9 final size:9
Alignment explanation
Indices: 102073190--102073288 Score: 62
Period size: 9 Copynumber: 10.4 Consensus size: 9
102073180 AAAAAATCAG
102073190 AAAAATTAT
1 AAAAATTAT
102073199 AAAAA-TA-
1 AAAAATTAT
102073206 AAAATATTAAT
1 AAAA-ATT-AT
102073217 ATTAAAATTAAT
1 A--AAAATT-AT
* *
102073229 ATAAACTTAA
1 A-AAAATTAT
102073239 AAAAATTA-
1 AAAAATTAT
102073247 AGAAAACTTAT
1 A-AAAA-TTAT
*
102073258 AAATATTAT
1 AAAAATTAT
102073267 AAAAA-TAT
1 AAAAATTAT
102073275 AATAAATTAT
1 AA-AAATTAT
102073285 AAAA
1 AAAA
102073289 TTAACAAACC
Statistics
Matches: 74, Mismatches: 5, Indels: 22
0.73 0.05 0.22
Matches are distributed among these distances:
7 4 0.05
8 9 0.12
9 29 0.39
10 14 0.19
11 8 0.11
12 7 0.09
13 3 0.04
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:102073271 original size:19 final size:19
Alignment explanation
Indices: 102073220--102073288 Score: 63
Period size: 19 Copynumber: 3.6 Consensus size: 19
102073210 TATTAATATT
* *
102073220 AAAATTAATATAAACTTAAA
1 AAAATT-ATAAAAACTTATA
102073240 AAAATTA-AGAAAACTTATA
1 AAAATTATA-AAAACTTATA
*
102073259 AATATTATAAAAA--TATA
1 AAAATTATAAAAACTTATA
102073276 ATAAATTATAAAA
1 A-AAATTATAAAA
102073289 TTAACAAACC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 5 0.12
18 11 0.26
19 19 0.45
20 7 0.17
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.30
Consensus pattern (19 bp):
AAAATTATAAAAACTTATA
Found at i:102078628 original size:17 final size:16
Alignment explanation
Indices: 102078606--102078637 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
102078596 AGTTATAAGT
102078606 AAAAATATTTACAATTA
1 AAAAATATTTA-AATTA
102078623 AAAAATATTTAAATT
1 AAAAATATTTAAATT
102078638 GGTAATGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAAATATTTAAATTA
Found at i:102078773 original size:24 final size:23
Alignment explanation
Indices: 102078746--102078791 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
102078736 AATTAAATTT
102078746 TATATTATTT-TCAAAAATTTAATA
1 TATATTATTTGT--AAAATTTAATA
*
102078770 TATATTGTTTGTAAAATTTAAT
1 TATATTATTTGTAAAATTTAAT
102078792 TTGAACATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 9 0.45
25 1 0.05
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.52
Consensus pattern (23 bp):
TATATTATTTGTAAAATTTAATA
Found at i:102080271 original size:10 final size:10
Alignment explanation
Indices: 102080258--102080291 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
102080248 TTTTCATTAG
102080258 TTTTTTCCTA
1 TTTTTTCCTA
102080268 TTTTTTTCCTA
1 -TTTTTTCCTA
*
102080279 TTTTTTTCTA
1 TTTTTTCCTA
102080289 TTT
1 TTT
102080292 CTTTTATCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTCCTA
Found at i:102080272 original size:11 final size:11
Alignment explanation
Indices: 102080258--102080296 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
102080248 TTTTCATTAG
102080258 TTTTTTCCTAT
1 TTTTTTCCTAT
102080269 TTTTTTCCTAT
1 TTTTTTCCTAT
102080280 TTTTTT-CTAT
1 TTTTTTCCTAT
102080290 TTCTTTT
1 TT-TTTT
102080297 ATCTTTTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 6 0.22
11 21 0.78
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTTCCTAT
Found at i:102084359 original size:53 final size:52
Alignment explanation
Indices: 102084278--102084435 Score: 174
Period size: 52 Copynumber: 3.0 Consensus size: 52
102084268 CGGACCACAT
* * *
102084278 ATCATACCGATGCCATATCCCGGATATGGTCTTATACGGAATCACATAATCAC
1 ATCATACCGATGCCATAACCCGGCTATGGTCTTATACGGAATCAC-GAATCAC
* * *
102084331 ATCACACCGATGCCATAACCCAGCTATGGTCTTATACGGGGAT-ACGAATCAC
1 ATCATACCGATGCCATAACCCGGCTATGGTCTTATAC-GGAATCACGAATCAC
** * ** * *
102084383 ATGGTACCAATGCCATAGTCCGGCTATGGTCTTATACGGAATCATGTATCAC
1 ATCATACCGATGCCATAACCCGGCTATGGTCTTATACGGAATCACGAATCAC
102084435 A
1 A
102084436 CCTTTTCCGT
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
51 4 0.05
52 44 0.51
53 35 0.40
54 4 0.05
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (52 bp):
ATCATACCGATGCCATAACCCGGCTATGGTCTTATACGGAATCACGAATCAC
Found at i:102088291 original size:47 final size:47
Alignment explanation
Indices: 102088222--102088321 Score: 150
Period size: 47 Copynumber: 2.1 Consensus size: 47
102088212 CTTCAATACA
*
102088222 GTTACATACAATATCTTTACCTGATTCGAAC-AACCTAATCAAGCTTT
1 GTTACATACAATATCTCTACCTGATTC-AACTAACCTAATCAAGCTTT
* *
102088269 GTTACATACAATATCTCTACCTGATTCAGCTCACCTAATCAAGCTTT
1 GTTACATACAATATCTCTACCTGATTCAACTAACCTAATCAAGCTTT
102088316 G-TACAT
1 GTTACAT
102088322 TAGGTCTCTA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
46 7 0.14
47 42 0.86
ACGTcount: A:0.32, C:0.25, G:0.09, T:0.34
Consensus pattern (47 bp):
GTTACATACAATATCTCTACCTGATTCAACTAACCTAATCAAGCTTT
Found at i:102091140 original size:18 final size:18
Alignment explanation
Indices: 102091117--102091188 Score: 58
Period size: 18 Copynumber: 3.9 Consensus size: 18
102091107 TGGAGAGGGC
*
102091117 ATATATAATATAATAATA
1 ATATATAATAAAATAATA
102091135 ATATATACATGAGAAATAATA
1 ATATATA-AT-A-AAATAATA
* *
102091156 ATAATATAA-ATAATAGTA
1 AT-ATATAATAAAATAATA
*
102091174 A-AAATAATAAAATAA
1 ATATATAATAAAATAA
102091189 AAAAATAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
16 5 0.12
17 5 0.12
18 14 0.33
19 3 0.07
20 1 0.02
21 10 0.23
22 5 0.12
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (18 bp):
ATATATAATAAAATAATA
Found at i:102091179 original size:24 final size:26
Alignment explanation
Indices: 102091126--102091189 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 26
102091116 CATATATAAT
102091126 ATAATAATAATAT--ATACATGAGAA
1 ATAATAATAATATAAATACATGAGAA
102091150 ATAATAATAATATAAATA-AT-AGTAA
1 ATAATAATAATATAAATACATGAG-AA
*
102091175 A-AATAATAAAATAAA
1 ATAATAATAATATAAA
102091190 AAAATAAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
24 28 0.78
25 5 0.14
26 3 0.08
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (26 bp):
ATAATAATAATATAAATACATGAGAA
Found at i:102091185 original size:9 final size:9
Alignment explanation
Indices: 102091148--102091196 Score: 50
Period size: 8 Copynumber: 5.7 Consensus size: 9
102091138 TATACATGAG
102091148 AAATAATAA
1 AAATAATAA
*
102091157 TAAT-ATAA
1 AAATAATAA
*
102091165 ATAATAGTAA
1 A-AATAATAA
102091175 AAATAAT-A
1 AAATAATAA
102091183 AAATAA-AA
1 AAATAATAA
102091191 AAATAA
1 AAATAA
102091197 AACAAAGCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
8 18 0.55
9 11 0.33
10 4 0.12
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (9 bp):
AAATAATAA
Found at i:102091614 original size:13 final size:13
Alignment explanation
Indices: 102091581--102091737 Score: 107
Period size: 13 Copynumber: 11.9 Consensus size: 13
102091571 TTTGTAGGCA
102091581 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
102091593 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
102091603 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
102091616 AGTAGG-GTGG-TT
1 AGT-GGAGTGGTTT
102091628 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
102091638 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
* *
102091651 AGTGTAGTGGTTGG
1 AGTGGAGTGGTT-T
102091665 AGTGGTTAGAGTGGTTT
1 AGT-G---GAGTGGTTT
*
102091682 AGTGTAGTGGTTT
1 AGTGGAGTGGTTT
*
102091695 AGTGTAGTGGTTGGAGT
1 AGTGGAGTGGTT----T
*
102091712 GGTTGGAGTGGTTT
1 AG-TGGAGTGGTTT
102091726 AGTGGAGTGGTT
1 AGTGGAGTGGTT
102091738 GGAGTGGTTT
Statistics
Matches: 118, Mismatches: 8, Indels: 37
0.72 0.05 0.23
Matches are distributed among these distances:
9 10 0.08
10 6 0.05
11 4 0.03
12 6 0.05
13 62 0.53
14 7 0.06
15 1 0.01
16 1 0.01
17 5 0.04
18 16 0.14
ACGTcount: A:0.13, C:0.00, G:0.48, T:0.38
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:102091633 original size:35 final size:35
Alignment explanation
Indices: 102091581--102091693 Score: 155
Period size: 35 Copynumber: 3.3 Consensus size: 35
102091571 TTTGTAGGCA
*
102091581 AGTGGAGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
1 AGTGTAGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
*
102091616 AGTAG-GGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
1 AGT-GTAGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
*
102091651 AGTGTAGTGGTTGGAGTGG-TTA---GAGTGGTTT
1 AGTGTAGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
102091682 AGTGTAGTGGTT
1 AGTGTAGTGGTT
102091694 TAGTGTAGTG
Statistics
Matches: 73, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
31 21 0.29
34 4 0.05
35 47 0.64
36 1 0.01
ACGTcount: A:0.13, C:0.00, G:0.49, T:0.38
Consensus pattern (35 bp):
AGTGTAGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
Found at i:102091670 original size:9 final size:9
Alignment explanation
Indices: 102091656--102091746 Score: 65
Period size: 9 Copynumber: 8.8 Consensus size: 9
102091646 GGTTTAGTGT
102091656 AGTGGTTGG
1 AGTGGTTGG
*
102091665 AGTGGTTAG
1 AGTGGTTGG
102091674 AGTGGTTTAGTG
1 AGTGG-TT-G-G
102091686 TAGTGGTTTAGTG
1 -AGTGG-TT-G-G
102091699 TAGTGGTTGG
1 -AGTGGTTGG
102091709 AGTGGTTGG
1 AGTGGTTGG
102091718 AGTGGTTTAGTGG
1 AGTGG--T--TGG
102091731 AGTGGTTGG
1 AGTGGTTGG
102091740 AGTGGTT
1 AGTGGTT
102091747 TAGTAGAGTA
Statistics
Matches: 72, Mismatches: 2, Indels: 16
0.80 0.02 0.18
Matches are distributed among these distances:
9 37 0.51
10 3 0.04
11 3 0.04
12 3 0.04
13 26 0.36
ACGTcount: A:0.14, C:0.00, G:0.47, T:0.38
Consensus pattern (9 bp):
AGTGGTTGG
Found at i:102091671 original size:44 final size:44
Alignment explanation
Indices: 102091622--102091737 Score: 205
Period size: 44 Copynumber: 2.6 Consensus size: 44
102091612 GTTTAGTAGG
*
102091622 GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTGTAGTGGTTGGA
1 GTGGTTGGAGTGGTTTAGTGGAGTGGTTTAGTGTAGTGGTTGGA
* *
102091666 GTGGTTAGAGTGGTTTAGTGTAGTGGTTTAGTGTAGTGGTTGGA
1 GTGGTTGGAGTGGTTTAGTGGAGTGGTTTAGTGTAGTGGTTGGA
102091710 GTGGTTGGAGTGGTTTAGTGGAGTGGTT
1 GTGGTTGGAGTGGTTTAGTGGAGTGGTT
102091738 GGAGTGGTTT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.40
Consensus pattern (44 bp):
GTGGTTGGAGTGGTTTAGTGGAGTGGTTTAGTGTAGTGGTTGGA
Found at i:102091731 original size:22 final size:22
Alignment explanation
Indices: 102091605--102091755 Score: 132
Period size: 22 Copynumber: 6.9 Consensus size: 22
102091595 GGTGGTTTAG
102091605 TGGAGTGGTTTAGTAGG-GTGGT
1 TGGAGTGGTTTAGT-GGAGTGGT
*
102091627 TGGGGTGGTTTAGTGGAGTGGT
1 TGGAGTGGTTTAGTGGAGTGGT
* * *
102091649 T-TAGT-GTAGTGGTTGGAGTGGT
1 TGGAGTGGT-TTAG-TGGAGTGGT
* *
102091671 TAGAGTGGTTTAGTGTAGTGGT
1 TGGAGTGGTTTAGTGGAGTGGT
* * *
102091693 T-TAGT-GTAGTGGTTGGAGTGGT
1 TGGAGTGGT-TTAG-TGGAGTGGT
102091715 TGGAGTGGTTTAGTGGAGTGGT
1 TGGAGTGGTTTAGTGGAGTGGT
*
102091737 TGGAGTGGTTTAGTAGAGT
1 TGGAGTGGTTTAGTGGAGT
102091756 AAAGATATTT
Statistics
Matches: 103, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
20 4 0.04
21 11 0.11
22 74 0.72
23 10 0.10
24 4 0.04
ACGTcount: A:0.15, C:0.00, G:0.47, T:0.38
Consensus pattern (22 bp):
TGGAGTGGTTTAGTGGAGTGGT
Found at i:102091755 original size:13 final size:12
Alignment explanation
Indices: 102091596--102091755 Score: 104
Period size: 13 Copynumber: 14.2 Consensus size: 12
102091586 AGTGGTTGGG
102091596 GTGGTTTAGTGGA
1 GTGGTTTAGT-GA
*
102091609 GTGGTTTAGTAGG
1 GTGGTTTAGT-GA
*
102091622 GTGG-TT-G-GG
1 GTGGTTTAGTGA
102091631 GTGGTTTAGTGGA
1 GTGGTTTAGT-GA
102091644 GTGGTTTAGTGTA
1 GTGGTTTAGTG-A
102091657 GTGG-TT-G-GA
1 GTGGTTTAGTGA
102091666 GTGG-TTA--GA
1 GTGGTTTAGTGA
102091675 GTGGTTTAGTGTA
1 GTGGTTTAGTG-A
102091688 GTGGTTTAGTGTA
1 GTGGTTTAGTG-A
102091701 GTGG-TT-G-GA
1 GTGGTTTAGTGA
102091710 GTGG-TT-G-GA
1 GTGGTTTAGTGA
102091719 GTGGTTTAGTGGA
1 GTGGTTTAGT-GA
102091732 GTGG-TT-G-GA
1 GTGGTTTAGTGA
102091741 GTGGTTTAGTAGA
1 GTGGTTTAGT-GA
102091754 GT
1 GT
102091756 AAAGATATTT
Statistics
Matches: 126, Mismatches: 3, Indels: 36
0.76 0.02 0.22
Matches are distributed among these distances:
9 39 0.31
10 11 0.09
11 7 0.06
12 10 0.08
13 59 0.47
ACGTcount: A:0.14, C:0.00, G:0.47, T:0.39
Consensus pattern (12 bp):
GTGGTTTAGTGA
Found at i:102092066 original size:44 final size:44
Alignment explanation
Indices: 102092002--102092855 Score: 695
Period size: 44 Copynumber: 19.4 Consensus size: 44
102091992 TGAGTTCTTG
* *
102092002 ATCTGCT-TCTTCGATCTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
102092045 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * ** *
102092087 ATGCTGAAATCTTCGATCTGCTT-CATCGTAAGCACAGGAATGTTAG
1 AT-CTGCTATCTTCGATCTG-TTCCCT-ATAAGCACAGGGATGCCAA
*
102092133 ATCTGCTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
102092177 ATCTGCTGT-TGTC-AACTTGTTCCCTATAAGCACAGGGATGCCAT
1 ATCTGCTATCT-TCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* ** * * * * *
102092221 GT-TGAAATCTTCGATCTGTTTCACTGTAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
102092265 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
102092309 ATCTGCTGTTTTC-AACTTATTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * ** *
102092351 ATGCTGAAATCTTCGATCTGATTCACC-GTAAGCACAGAAATGTCAA
1 AT-CTGCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAA
* *
102092397 ATCTGCTATTCTTCGATTTGTTCCCTATAAGCATAGGGATGCCAA
1 ATCTGCTA-TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
102092442 ATCTGCTGTTTTCAATTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
102092484 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAA
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
102092530 ATATGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
102092574 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * ** *
102092616 ATGCTGAAATCTTCGATATGCTTCACTGTAAGCACAGGAATGTTAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
** * *
102092662 ATCTATTATCTTCGATCTATTCCCTATAGGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
102092706 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * *
102092748 ATGCTGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * *
102092794 ATCTACTATCTTCGATCTGTTCCCTATAAACACAAGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
*
102092838 ATCTGCAATCTTCGATCT
1 ATCTGCTATCTTCGATCT
102092856 CTCTCCGCCG
Statistics
Matches: 629, Mismatches: 142, Indels: 79
0.74 0.17 0.09
Matches are distributed among these distances:
42 10 0.02
43 75 0.12
44 424 0.67
45 100 0.16
46 20 0.03
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:102092251 original size:132 final size:132
Alignment explanation
Indices: 102092001--102092843 Score: 1375
Period size: 132 Copynumber: 6.4 Consensus size: 132
102091991 TTGAGTTCTT
* * * *
102092001 GATCTGCT-TCTTCGATCTGTTCCCCATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
*
102092065 TCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTTCA-TCGTAAGCACAGGAATG
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACT-GTAAGCACAGGAATG
*
102092129 TTA
130 TCA
* *
102092132 GATCTGCTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTGTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
* *
102092197 TCCCTATAAGCACAGGGATGCCATGTTGAAATCTTCGATCTGTTTCACTGTAAGCACAGGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
102092262 CA
131 CA
*
102092264 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTAT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
* * *
102092329 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGATTCACCGTAAGCACAGAAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
102092394 CA
131 CA
* * * *
102092396 AATCTGCTATTCTTCGATTTGTTCCCTATAAGCATAGGGATGCCAAATCTGCTGTTTTCAATTTG
1 GATCTGCTA-TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTG
*
102092461 TTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATG
65 TTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATG
102092526 TCA
130 TCA
* *
102092529 AATATGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
*
102092594 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATATGCTTCACTGTAAGCACAGGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
*
102092659 TA
131 CA
** * *
102092661 GATCTATTATCTTCGATCTATTCCCTATAGGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
*
102092726 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
102092791 CA
131 CA
* * *
102092793 GATCTACTATCTTCGATCTGTTCCCTATAAACACAAGGATGCCAAATCTGC
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGC
102092844 AATCTTCGAT
Statistics
Matches: 662, Mismatches: 47, Indels: 5
0.93 0.07 0.01
Matches are distributed among these distances:
131 8 0.01
132 530 0.80
133 124 0.19
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
CA
Found at i:102092741 original size:397 final size:397
Alignment explanation
Indices: 102092008--102092850 Score: 1384
Period size: 397 Copynumber: 2.1 Consensus size: 397
102091998 CTTGATCTGC
*
102092008 TTCTTCGATCTGTTCCCCATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
1 TTCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
* * * * *
102092073 AGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTTCATCGTAAGCACAGGAATGTTAGATCTG
66 AGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCATCGTAAGCACAAGAATGTCAAATATG
*
102092138 CTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTGTCAACTTGTTCCCTA
131 CTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTGTCAACTTGTTCCCTA
* * *
102092203 TAAGCACAGGGATGCCATGTTGAAATCTTCGATCTGTTTCACTGTAAGCACAGGAATGTCAGATC
196 TAAGCACAGGGATGCCATGCTGAAATCTTCGATATGCTTCACTGTAAGCACAGGAATGTCAGATC
* *
102092268 TGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTATTCCC
261 TACTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTATTCCC
*
102092333 TATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGATTCACCGTAAGCACAGAAATGTCAAA
326 TATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGATTCACCATAAGCACAGAAATGTCAAA
*
102092398 TCTGCTA
391 TCTACTA
* * * * * *
102092405 TTCTTCGATTTGTTCCCTATAAGCATAGGGATGCCAAATCTGCTGTTTTCAATTTGTTCCCTATA
1 TTCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
102092470 AGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCA-CTGTAAGCACAAGAATGTCAAATAT
66 AGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCATC-GTAAGCACAAGAATGTCAAATAT
*
102092534 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCT
130 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTGTCAACTTGTTCCCT
*
102092599 ATAAGCACAGGGATGCCATGCTGAAATCTTCGATATGCTTCACTGTAAGCACAGGAATGTTAGAT
195 ATAAGCACAGGGATGCCATGCTGAAATCTTCGATATGCTTCACTGTAAGCACAGGAATGTCAGAT
* * *
102092664 CTATTATCTTCGATCTATTCCCTATAGGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCC
260 CTACTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTATTCC
* * * *
102092729 CTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAG
325 CTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGATTCACCATAAGCACAGAAATGTCAA
102092794 ATCTACTA
390 ATCTACTA
* *
102092802 -TCTTCGATCTGTTCCCTATAAACACAAGGATGCCAAATCTGCAATCTTC
1 TTCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTC
102092851 GATCTCTCTC
Statistics
Matches: 409, Mismatches: 36, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
396 43 0.11
397 366 0.89
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (397 bp):
TTCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
AGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCATCGTAAGCACAAGAATGTCAAATATG
CTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTGTCAACTTGTTCCCTA
TAAGCACAGGGATGCCATGCTGAAATCTTCGATATGCTTCACTGTAAGCACAGGAATGTCAGATC
TACTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTATTCCC
TATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGATTCACCATAAGCACAGAAATGTCAAA
TCTACTA
Found at i:102093158 original size:205 final size:205
Alignment explanation
Indices: 102092867--102093355 Score: 719
Period size: 205 Copynumber: 2.4 Consensus size: 205
102092857 TCTCCGCCGC
* * * * * * * *
102092867 TACAGAGACGTCAAATTATCTTGGATTTGCTTCAATGTAAACACGTAAAAGCCAAATCAGCTATG
1 TACAGAGATGCCAAATCATCATAGATTTACTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
* * *
102092932 TCTTCGATTTGCTCATTGTAAGCACAAGGATGGAAAACCATCTTGGATCTGCTTCACTATAAACA
66 TCTTCGATTTGCTCATTGTAAGCACAAGGATGCAAAACCATATTGGATCTACTTCACTATAAACA
102092997 TTTGAAGGCTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
131 TTTGAAGGCTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
102093062 TCTCTGACAA
196 TCTCTGACAA
* * *
102093072 TACAGATATGCCAAATCAT-ATTAGATTTACTTTAACGTAAGCACGTGAAAGCCAAATCAGCTAT
1 TACAGAGATGCCAAATCATCA-TAGATTTACTTCAACGTAAACACGTGAAAGCCAAATCAGCTAT
* * * *
102093136 GTCTTCGATTTGCTCCTTGTAAGCACAATGATGCCAAACCATATTGGATCTACTTCAGTATAAAC
65 GTCTTCGATTTGCTCATTGTAAGCACAAGGATGCAAAACCATATTGGATCTACTTCACTATAAAC
* * * * * *
102093201 ATTTGAAGGTTGGATCTGCTATGTGTCTGCCTTCCGTCGAAGTGGAGATGCTAGACTTCGATTTG
130 ATTTGAAGGCTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTG
102093266 TTCTCTGACAA
195 TTCTCTGACAA
* *
102093277 TACAGAGATGCCAAATCATCATAGATTTGCTTCAACGTAAACACGTGAAAGCTAAATCAGCTATG
1 TACAGAGATGCCAAATCATCATAGATTTACTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
*
102093342 TCTTCGATCTGCTC
66 TCTTCGATTTGCTC
102093356 TCCGCTTGAT
Statistics
Matches: 252, Mismatches: 30, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
205 251 1.00
206 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (205 bp):
TACAGAGATGCCAAATCATCATAGATTTACTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
TCTTCGATTTGCTCATTGTAAGCACAAGGATGCAAAACCATATTGGATCTACTTCACTATAAACA
TTTGAAGGCTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
TCTCTGACAA
Found at i:102100844 original size:7 final size:7
Alignment explanation
Indices: 102100828--102106374 Score: 8085
Period size: 7 Copynumber: 787.7 Consensus size: 7
102100818 ATTTATCTCA
*
102100828 GTTTAAG
1 GTTTAGG
102100835 GTTTAGG
1 GTTTAGG
*
102100842 GTTTAAG
1 GTTTAGG
*
102100849 GTTGAGG
1 GTTTAGG
*
102100856 GTTGAGG
1 GTTTAGG
*
102100863 GTTGAGG
1 GTTTAGG
*
102100870 GTTGAGG
1 GTTTAGG
*
102100877 GTTGAGG
1 GTTTAGG
*
102100884 GTTGAGG
1 GTTTAGG
*
102100891 GTTGAGG
1 GTTTAGG
102100898 GTTT-GG
1 GTTTAGG
*
102100904 GTTTGGG
1 GTTTAGG
*
102100911 GTTTTGG
1 GTTTAGG
*
102100918 GTTTGGG
1 GTTTAGG
*
102100925 GTTCAGG
1 GTTTAGG
*
102100932 GTTCAGG
1 GTTTAGG
102100939 GTTTATGG
1 GTTTA-GG
* *
102100947 TTTTAAG
1 GTTTAGG
102100954 G-TTAGAG
1 GTTTAG-G
102100961 GTTTAGG
1 GTTTAGG
102100968 GTTTAGGG
1 GTTTA-GG
*
102100976 GTTTAAG
1 GTTTAGG
* *
102100983 TTTTAAAG
1 GTTT-AGG
102100991 GTTTAGG
1 GTTTAGG
102100998 G-TTAGG
1 GTTTAGG
102101004 G-TTAGG
1 GTTTAGG
102101010 G-TTAGG
1 GTTTAGG
102101016 GTTTTAGG
1 G-TTTAGG
*
102101024 GTTTTAAG
1 G-TTTAGG
102101032 GTTTAGG
1 GTTTAGG
102101039 GTTTTAGG
1 G-TTTAGG
102101047 GTTTAGG
1 GTTTAGG
102101054 GTTTAGG
1 GTTTAGG
**
102101061 GTTTTATA
1 G-TTTAGG
102101069 GTTTAGG
1 GTTTAGG
*
102101076 CTTTAGG
1 GTTTAGG
*
102101083 GTTTAAG
1 GTTTAGG
102101090 GTTTAGG
1 GTTTAGG
*
102101097 GTTGTAAG
1 GTT-TAGG
102101105 GTTTAGG
1 GTTTAGG
102101112 GTTTAGG
1 GTTTAGG
102101119 GTTTAGG
1 GTTTAGG
* *
102101126 GCTTAAG
1 GTTTAGG
*** *
102101133 GCACAAG
1 GTTTAGG
* **
102101140 GCTCGGG
1 GTTTAGG
* **
102101147 GCTCGGG
1 GTTTAGG
* *
102101154 GCTCAGG
1 GTTTAGG
* **
102101161 GCTCGGG
1 GTTTAGG
*
102101168 GTTTAAG
1 GTTTAGG
102101175 GTTTAGG
1 GTTTAGG
102101182 GTTTAGG
1 GTTTAGG
*
102101189 GTTTGGG
1 GTTTAGG
*
102101196 GTTTGGG
1 GTTTAGG
102101203 GTTTAGG
1 GTTTAGG
*
102101210 GTTTAAG
1 GTTTAGG
102101217 GTTTAGG
1 GTTTAGG
102101224 GTTTAGG
1 GTTTAGG
*
102101231 GTTTAGA
1 GTTTAGG
*
102101238 GTTTGGG
1 GTTTAGG
*
102101245 GTTTGGG
1 GTTTAGG
*
102101252 GTTTATG
1 GTTTAGG
102101259 GTTTAGG
1 GTTTAGG
* *
102101266 GTCTGGG
1 GTTTAGG
*
102101273 GTTTATG
1 GTTTAGG
102101280 GTTT-GAG
1 GTTTAG-G
*
102101287 TTTTAGG
1 GTTTAGG
* *
102101294 GATTGGG
1 GTTTAGG
*
102101301 GTTTGGG
1 GTTTAGG
*
102101308 GTTTGGG
1 GTTTAGG
102101315 GTTTAGG
1 GTTTAGG
102101322 GTTT-GTG
1 GTTTAG-G
102101329 GTTTTTA-G
1 G--TTTAGG
102101337 GTTTAGGG
1 GTTTA-GG
*
102101345 GTTTGGG
1 GTTTAGG
*
102101352 GTTTGGG
1 GTTTAGG
*
102101359 GTTTGGG
1 GTTTAGG
*
102101366 GTTCAGG
1 GTTTAGG
*
102101373 GTTCAGG
1 GTTTAGG
102101380 GTTTAGG
1 GTTTAGG
*
102101387 GTGTAGG
1 GTTTAGG
102101394 GTTTTAGG
1 G-TTTAGG
*
102101402 GTTCAGG
1 GTTTAGG
*
102101409 GTTCAGG
1 GTTTAGG
102101416 GTTTAGG
1 GTTTAGG
102101423 GTTTAGG
1 GTTTAGG
*
102101430 GTTCAGG
1 GTTTAGG
102101437 GTTTAGG
1 GTTTAGG
102101444 GTTTAGG
1 GTTTAGG
102101451 GTTTAGG
1 GTTTAGG
102101458 GTTTTAGG
1 G-TTTAGG
102101466 GTTTAGG
1 GTTTAGG
102101473 GTTTAGG
1 GTTTAGG
*
102101480 TTTTAGG
1 GTTTAGG
102101487 GTTTAGG
1 GTTTAGG
*
102101494 TTTTAGG
1 GTTTAGG
102101501 GTTTAGG
1 GTTTAGG
102101508 GTTTAGG
1 GTTTAGG
*
102101515 GTTCAGG
1 GTTTAGG
102101522 GTTTTAGG
1 G-TTTAGG
*
102101530 GTTCAGG
1 GTTTAGG
102101537 GTTTTAGG
1 G-TTTAGG
*
102101545 GTTCAGG
1 GTTTAGG
*
102101552 GTTCAGG
1 GTTTAGG
* *
102101559 GGTCAGG
1 GTTTAGG
* *
102101566 GGTCAGG
1 GTTTAGG
* *
102101573 GGTCAGG
1 GTTTAGG
* *
102101580 GGTCAGG
1 GTTTAGG
* *
102101587 GGTCAGG
1 GTTTAGG
* *
102101594 GGTCAGG
1 GTTTAGG
* *
102101601 GGTCAGG
1 GTTTAGG
* *
102101608 GGTCAGG
1 GTTTAGG
* *
102101615 GGTCAGG
1 GTTTAGG
* *
102101622 GGTCAGG
1 GTTTAGG
* *
102101629 GGTCAGG
1 GTTTAGG
* *
102101636 GGTCAGG
1 GTTTAGG
*
102101643 GTTCAGG
1 GTTTAGG
* *
102101650 GGTCAGG
1 GTTTAGG
* *
102101657 GGTCAGG
1 GTTTAGG
* *
102101664 GGTCAGG
1 GTTTAGG
*
102101671 GTTCAGG
1 GTTTAGG
*
102101678 GTTCAGG
1 GTTTAGG
*
102101685 GTTCAGG
1 GTTTAGG
*
102101692 GTTCAGG
1 GTTTAGG
*
102101699 GTTCAAGG
1 GTT-TAGG
102101707 GTTTAGG
1 GTTTAGG
102101714 GTTTAGG
1 GTTTAGG
102101721 GTTTAGG
1 GTTTAGG
102101728 GTTTAGG
1 GTTTAGG
102101735 GTTTAGG
1 GTTTAGG
102101742 GTTTAGG
1 GTTTAGG
102101749 GTTTAGG
1 GTTTAGG
102101756 GTTTAGG
1 GTTTAGG
102101763 GTTTAGG
1 GTTTAGG
102101770 GTTTAGG
1 GTTTAGG
102101777 GTTTAGG
1 GTTTAGG
102101784 GTTTAGG
1 GTTTAGG
102101791 GTTTAGG
1 GTTTAGG
102101798 GTTTAGG
1 GTTTAGG
102101805 GTTTAGG
1 GTTTAGG
102101812 GTTTAGG
1 GTTTAGG
102101819 GTTTAGG
1 GTTTAGG
102101826 GTTTAGG
1 GTTTAGG
102101833 GTTTTA-G
1 G-TTTAGG
102101840 GTTTAGG
1 GTTTAGG
102101847 GTTTAGG
1 GTTTAGG
102101854 GTTTAGG
1 GTTTAGG
102101861 GTTTTA-G
1 G-TTTAGG
102101868 GTTTAGG
1 GTTTAGG
102101875 GTTTAGG
1 GTTTAGG
102101882 GTTTAGG
1 GTTTAGG
*
102101889 TTTTA-G
1 GTTTAGG
102101895 GTTTAGG
1 GTTTAGG
102101902 GTTTAGG
1 GTTTAGG
102101909 GTTTAGG
1 GTTTAGG
102101916 GTTTAGG
1 GTTTAGG
102101923 GTTTAGG
1 GTTTAGG
*
102101930 GTTTGGG
1 GTTTAGG
*
102101937 GTTTGGG
1 GTTTAGG
*
102101944 GTTTGGG
1 GTTTAGG
*
102101951 GTTTGGG
1 GTTTAGG
*
102101958 GTTTGGG
1 GTTTAGG
*
102101965 GTTTGGG
1 GTTTAGG
*
102101972 GTTTGGG
1 GTTTAGG
*
102101979 GTTTGGG
1 GTTTAGG
*
102101986 GTTTGGG
1 GTTTAGG
*
102101993 GTTTGGG
1 GTTTAGG
*
102102000 GTTTGGG
1 GTTTAGG
*
102102007 GTTTGGG
1 GTTTAGG
*
102102014 GTTTGGG
1 GTTTAGG
*
102102021 GTTTGGG
1 GTTTAGG
*
102102028 GTTTGGG
1 GTTTAGG
*
102102035 GTTTGGG
1 GTTTAGG
*
102102042 GTTTGGG
1 GTTTAGG
*
102102049 GTTTGGG
1 GTTTAGG
*
102102056 GTTTGGG
1 GTTTAGG
*
102102063 GTTTGGG
1 GTTTAGG
*
102102070 GTTTGGG
1 GTTTAGG
*
102102077 GTTTGGG
1 GTTTAGG
*
102102084 GTTTGGG
1 GTTTAGG
*
102102091 GTTTGGG
1 GTTTAGG
*
102102098 GTTTGGG
1 GTTTAGG
*
102102105 GTTTGGG
1 GTTTAGG
*
102102112 GTTTGGG
1 GTTTAGG
*
102102119 GTTTGGG
1 GTTTAGG
*
102102126 GTTTGGG
1 GTTTAGG
102102133 GTTT-GG
1 GTTTAGG
102102139 GTTT-GG
1 GTTTAGG
* *
102102145 GGTTGGG
1 GTTTAGG
*
102102152 GTTTGGG
1 GTTTAGG
*
102102159 GTTTGGG
1 GTTTAGG
*
102102166 GTTTGGG
1 GTTTAGG
*
102102173 GTTTGGG
1 GTTTAGG
*
102102180 GTTTGGG
1 GTTTAGG
*
102102187 GTTTGGG
1 GTTTAGG
102102194 GTTT-GG
1 GTTTAGG
*
102102200 GTTTGGG
1 GTTTAGG
*
102102207 GTTTGGG
1 GTTTAGG
*
102102214 GTTTGGG
1 GTTTAGG
*
102102221 GTTTGGG
1 GTTTAGG
*
102102228 GTTTGGG
1 GTTTAGG
*
102102235 GTTTGGG
1 GTTTAGG
*
102102242 GTTTGGG
1 GTTTAGG
*
102102249 GTTTGGG
1 GTTTAGG
*
102102256 GTTTGGG
1 GTTTAGG
*
102102263 GTTTGGG
1 GTTTAGG
*
102102270 GTTTGGG
1 GTTTAGG
102102277 GTTT-GG
1 GTTTAGG
* *
102102283 GGTTGGG
1 GTTTAGG
*
102102290 GTTTGGG
1 GTTTAGG
*
102102297 GTTTGGG
1 GTTTAGG
*
102102304 GTTTGGG
1 GTTTAGG
*
102102311 GTTTGGG
1 GTTTAGG
*
102102318 GTTTGGG
1 GTTTAGG
*
102102325 GTTTGGG
1 GTTTAGG
*
102102332 GTTTGGG
1 GTTTAGG
102102339 GTTT-GG
1 GTTTAGG
*
102102345 GGTT-GG
1 GTTTAGG
*
102102351 GTTTGGG
1 GTTTAGG
*
102102358 GTTTGGG
1 GTTTAGG
102102365 GTTT-GG
1 GTTTAGG
*
102102371 GTTTGGG
1 GTTTAGG
*
102102378 GTTTGGG
1 GTTTAGG
*
102102385 GTTTGGG
1 GTTTAGG
*
102102392 GTTTGGG
1 GTTTAGG
*
102102399 GTTTGGG
1 GTTTAGG
*
102102406 GTTTGGG
1 GTTTAGG
*
102102413 GTTTGGG
1 GTTTAGG
*
102102420 GTTTGGG
1 GTTTAGG
*
102102427 GTTTGGG
1 GTTTAGG
*
102102434 GTTTGGG
1 GTTTAGG
*
102102441 GTTTGGG
1 GTTTAGG
*
102102448 GTTTGGG
1 GTTTAGG
*
102102455 GTTTGGG
1 GTTTAGG
*
102102462 GTTTGGG
1 GTTTAGG
102102469 GTTT-GG
1 GTTTAGG
* *
102102475 GGTTGGG
1 GTTTAGG
*
102102482 GTTTGGG
1 GTTTAGG
*
102102489 GTTTGGG
1 GTTTAGG
102102496 GTTTAGG
1 GTTTAGG
*
102102503 GTTTGGG
1 GTTTAGG
102102510 GTTT-GG
1 GTTTAGG
*
102102516 GTTTGGG
1 GTTTAGG
*
102102523 GTTTGGG
1 GTTTAGG
102102530 GTTT-GG
1 GTTTAGG
*
102102536 GTTTGGG
1 GTTTAGG
*
102102543 GTTTGGG
1 GTTTAGG
*
102102550 GTTTGGG
1 GTTTAGG
*
102102557 GTTTGGG
1 GTTTAGG
*
102102564 GTTTGGG
1 GTTTAGG
102102571 GTTTAGG
1 GTTTAGG
102102578 GTTTAGG
1 GTTTAGG
102102585 GTTTAGG
1 GTTTAGG
102102592 GTTTAGG
1 GTTTAGG
102102599 GTTTAGG
1 GTTTAGG
102102606 GTTTAGG
1 GTTTAGG
102102613 GTTTAGG
1 GTTTAGG
102102620 GTTTTAGG
1 G-TTTAGG
102102628 GTTTAGG
1 GTTTAGG
102102635 GTTTAGG
1 GTTTAGG
102102642 GTTTTAGG
1 G-TTTAGG
102102650 GTTTA-G
1 GTTTAGG
102102656 G-TTAGG
1 GTTTAGG
102102662 GTTTAGG
1 GTTTAGG
102102669 GTTTAGG
1 GTTTAGG
102102676 GTTTAGG
1 GTTTAGG
102102683 GTTTAGG
1 GTTTAGG
102102690 GTTTAGG
1 GTTTAGG
102102697 GTTTAGG
1 GTTTAGG
102102704 GTTTAGG
1 GTTTAGG
102102711 GTTTAGG
1 GTTTAGG
102102718 GTTTAGG
1 GTTTAGG
102102725 GTTTAGG
1 GTTTAGG
102102732 GTTTTAGG
1 G-TTTAGG
102102740 GTTTAGG
1 GTTTAGG
102102747 GTTTAGG
1 GTTTAGG
102102754 GTTTAGG
1 GTTTAGG
102102761 GTTTAGG
1 GTTTAGG
102102768 GTTTAGG
1 GTTTAGG
102102775 GTTTAGG
1 GTTTAGG
102102782 GTTTAGG
1 GTTTAGG
102102789 GTTTAGG
1 GTTTAGG
102102796 GTTTAGG
1 GTTTAGG
102102803 GTTTAGG
1 GTTTAGG
102102810 GTTTAGG
1 GTTTAGG
102102817 GTTTAGG
1 GTTTAGG
102102824 GTTTAGG
1 GTTTAGG
102102831 GTTTAGG
1 GTTTAGG
102102838 GTTTAGG
1 GTTTAGG
102102845 GTTTAGG
1 GTTTAGG
102102852 GTTTAGG
1 GTTTAGG
102102859 GTTTAGG
1 GTTTAGG
102102866 GTTTAGG
1 GTTTAGG
102102873 GTTTAGG
1 GTTTAGG
102102880 GTTTAGG
1 GTTTAGG
102102887 GTTTAGG
1 GTTTAGG
102102894 GTTTAGG
1 GTTTAGG
102102901 GTTTAGG
1 GTTTAGG
102102908 GTTTAGG
1 GTTTAGG
102102915 GTTTAGG
1 GTTTAGG
102102922 GTTTAGG
1 GTTTAGG
102102929 GTTTAGG
1 GTTTAGG
102102936 GTTTAGG
1 GTTTAGG
102102943 GTTTAGG
1 GTTTAGG
102102950 GTTTAGG
1 GTTTAGG
102102957 GTTTAGG
1 GTTTAGG
102102964 GTTTTAGG
1 G-TTTAGG
102102972 GTTTAGG
1 GTTTAGG
102102979 GTTTAGG
1 GTTTAGG
102102986 GTTTAGG
1 GTTTAGG
102102993 GTTTAGG
1 GTTTAGG
102103000 GTTT-GG
1 GTTTAGG
102103006 GTTTAGG
1 GTTTAGG
102103013 GTTTAGG
1 GTTTAGG
102103020 GTTTTAGG
1 G-TTTAGG
102103028 GTTTAGG
1 GTTTAGG
102103035 GTTTAGG
1 GTTTAGG
102103042 GTTTAGG
1 GTTTAGG
102103049 GTTTAGG
1 GTTTAGG
102103056 GTTTAGG
1 GTTTAGG
102103063 GTTTA-G
1 GTTTAGG
102103069 G-TTAGG
1 GTTTAGG
102103075 GTTTAGG
1 GTTTAGG
102103082 GTTTAGG
1 GTTTAGG
102103089 GTTTAGG
1 GTTTAGG
102103096 GTTTAGG
1 GTTTAGG
102103103 GTTTAGG
1 GTTTAGG
102103110 GTTTAGG
1 GTTTAGG
102103117 GTTTAGG
1 GTTTAGG
102103124 GTTTAGG
1 GTTTAGG
102103131 GTTTAGG
1 GTTTAGG
102103138 GTTTA-G
1 GTTTAGG
102103144 GTTTAGG
1 GTTTAGG
102103151 GTTTAGG
1 GTTTAGG
102103158 GTTTAGG
1 GTTTAGG
102103165 GTTTAGG
1 GTTTAGG
102103172 GTTTAGG
1 GTTTAGG
102103179 GTTTAGG
1 GTTTAGG
102103186 GTTTAGG
1 GTTTAGG
102103193 GTTTAGG
1 GTTTAGG
102103200 GTTTAGG
1 GTTTAGG
102103207 GTTTAGG
1 GTTTAGG
102103214 GTTTAGG
1 GTTTAGG
102103221 GTTTAGG
1 GTTTAGG
102103228 GTTTTAGG
1 G-TTTAGG
102103236 GTTTAGG
1 GTTTAGG
102103243 GTTTTAGG
1 G-TTTAGG
102103251 GTTTAGG
1 GTTTAGG
102103258 GTTTAGG
1 GTTTAGG
102103265 GTTT-GG
1 GTTTAGG
102103271 GTTTAGG
1 GTTTAGG
102103278 GTTTAGG
1 GTTTAGG
102103285 GTTTAGG
1 GTTTAGG
102103292 GTTTAGG
1 GTTTAGG
102103299 GTTTAGG
1 GTTTAGG
102103306 GTTTAGG
1 GTTTAGG
102103313 GTTTAGG
1 GTTTAGG
102103320 GTTTAGG
1 GTTTAGG
102103327 GTTTAGG
1 GTTTAGG
102103334 GTTTAGG
1 GTTTAGG
102103341 GTTTAGG
1 GTTTAGG
102103348 GTTTTAGG
1 G-TTTAGG
102103356 GTTTAGG
1 GTTTAGG
102103363 GTTTAGG
1 GTTTAGG
102103370 GTTT-GG
1 GTTTAGG
102103376 GTTTAGG
1 GTTTAGG
102103383 GTTTAGG
1 GTTTAGG
102103390 GTTTAGG
1 GTTTAGG
102103397 GTTTAGG
1 GTTTAGG
102103404 GTTTAGG
1 GTTTAGG
102103411 GTTTAGG
1 GTTTAGG
102103418 GTTTAGG
1 GTTTAGG
102103425 GTTTAGG
1 GTTTAGG
102103432 GTTTAGG
1 GTTTAGG
102103439 GTTTAGG
1 GTTTAGG
102103446 GTTTAGG
1 GTTTAGG
102103453 GTTTTAGGGG
1 G-TTTA--GG
102103463 GTTTTAGG
1 G-TTTAGG
102103471 GTTTAGG
1 GTTTAGG
102103478 GTTTAGG
1 GTTTAGG
102103485 GTTTAGG
1 GTTTAGG
102103492 GTTTAGG
1 GTTTAGG
102103499 GTTTAGG
1 GTTTAGG
102103506 GTTTAGG
1 GTTTAGG
102103513 GTTTAGG
1 GTTTAGG
102103520 GTTTAGG
1 GTTTAGG
102103527 GTTTTAGG
1 G-TTTAGG
102103535 GTTTAGG
1 GTTTAGG
102103542 GTTTAGG
1 GTTTAGG
102103549 GTTTAGG
1 GTTTAGG
*
102103556 TTTTAGG
1 GTTTAGG
102103563 GTTTAGG
1 GTTTAGG
102103570 GTTTAGG
1 GTTTAGG
102103577 GTTTAGG
1 GTTTAGG
102103584 GTTTAGG
1 GTTTAGG
102103591 GTTTTAGG
1 G-TTTAGG
102103599 GTTTAGG
1 GTTTAGG
102103606 GTTTAGG
1 GTTTAGG
102103613 GTTTTAGG
1 G-TTTAGG
102103621 G-TTAGG
1 GTTTAGG
102103627 GTTTAGG
1 GTTTAGG
102103634 GTTTAGG
1 GTTTAGG
102103641 GTTTAGG
1 GTTTAGG
102103648 GTTTAGG
1 GTTTAGG
102103655 GTTTAGG
1 GTTTAGG
102103662 GTTTAGG
1 GTTTAGG
102103669 GTTTAGG
1 GTTTAGG
102103676 GTTTAGG
1 GTTTAGG
102103683 GTTTAGG
1 GTTTAGG
102103690 GTTTAGG
1 GTTTAGG
102103697 GTTTAGG
1 GTTTAGG
102103704 GTTTAGG
1 GTTTAGG
102103711 GTTTAGG
1 GTTTAGG
102103718 GTTTAGG
1 GTTTAGG
102103725 GTTTAGG
1 GTTTAGG
102103732 GTTTAGG
1 GTTTAGG
102103739 GTTTAGG
1 GTTTAGG
102103746 GTTTAGG
1 GTTTAGG
102103753 GTTTTAGG
1 G-TTTAGG
102103761 GTTTAGG
1 GTTTAGG
102103768 GTTTTAGG
1 G-TTTAGG
102103776 GTTTAGGG
1 GTTTA-GG
102103784 GTTTAGG
1 GTTTAGG
102103791 GTTTAGG
1 GTTTAGG
102103798 GTTTAGG
1 GTTTAGG
102103805 GTTTAGG
1 GTTTAGG
102103812 GTTTAGG
1 GTTTAGG
102103819 GTTTAGG
1 GTTTAGG
102103826 GTTTAGG
1 GTTTAGG
102103833 GTTTAGG
1 GTTTAGG
102103840 GTTTTTA-G
1 G--TTTAGG
102103848 GTTTAGG
1 GTTTAGG
102103855 GTTTAGG
1 GTTTAGG
102103862 GTTTAGG
1 GTTTAGG
102103869 GTTTAGG
1 GTTTAGG
102103876 GTTTAGG
1 GTTTAGG
102103883 GTTTAGG
1 GTTTAGG
102103890 GTTTAGG
1 GTTTAGG
102103897 GTTTAGG
1 GTTTAGG
102103904 GTTTAGG
1 GTTTAGG
102103911 GTTTAGG
1 GTTTAGG
102103918 GTTTAGG
1 GTTTAGG
102103925 G-TTAGG
1 GTTTAGG
102103931 GTTT-GG
1 GTTTAGG
102103937 GTTTAGG
1 GTTTAGG
102103944 GTTTAGG
1 GTTTAGG
102103951 GTTTAGG
1 GTTTAGG
102103958 GTTTAGG
1 GTTTAGG
102103965 GTTTAGG
1 GTTTAGG
102103972 GTTTAGG
1 GTTTAGG
102103979 GTTTAAGG
1 GTTT-AGG
102103987 GTTTAGG
1 GTTTAGG
102103994 GTTTTTTAGG
1 G---TTTAGG
102104004 GTTTAGG
1 GTTTAGG
102104011 GTTTAGG
1 GTTTAGG
*
102104018 GTTTGGG
1 GTTTAGG
102104025 GTTTTAGG
1 G-TTTAGG
102104033 GTTTAGG
1 GTTTAGG
102104040 GTTTAGG
1 GTTTAGG
102104047 GTTTAGG
1 GTTTAGG
102104054 GTTTAGG
1 GTTTAGG
102104061 GTTTAGG
1 GTTTAGG
102104068 GTTTAGG
1 GTTTAGG
102104075 GTTTAGG
1 GTTTAGG
102104082 GTTTAGG
1 GTTTAGG
102104089 GTTTAGG
1 GTTTAGG
102104096 G-TTAGG
1 GTTTAGG
102104102 GTTTAGG
1 GTTTAGG
102104109 GTTTTAGG
1 G-TTTAGG
102104117 GTTTAGG
1 GTTTAGG
102104124 GTTTAGG
1 GTTTAGG
102104131 GTTTAGG
1 GTTTAGG
102104138 GTTTAGG
1 GTTTAGG
102104145 GTTTAGG
1 GTTTAGG
102104152 G-TT-GG
1 GTTTAGG
102104157 GTTTAGG
1 GTTTAGG
102104164 GTTTAGG
1 GTTTAGG
102104171 GTTTAGG
1 GTTTAGG
102104178 GTTTTAGG
1 G-TTTAGG
102104186 GTTTAGG
1 GTTTAGG
102104193 GTTTAGG
1 GTTTAGG
102104200 GTTTAGG
1 GTTTAGG
102104207 GTTTAGG
1 GTTTAGG
102104214 GTTTAGG
1 GTTTAGG
102104221 GTTTAGG
1 GTTTAGG
102104228 GTTTAGG
1 GTTTAGG
102104235 GTTT-GG
1 GTTTAGG
102104241 GTTTAGG
1 GTTTAGG
102104248 GTTTAGG
1 GTTTAGG
102104255 GTTTAGG
1 GTTTAGG
102104262 GTTTAGG
1 GTTTAGG
102104269 GTTTAGG
1 GTTTAGG
102104276 GTTTTAGG
1 G-TTTAGG
102104284 GTTTAGG
1 GTTTAGG
102104291 GTTTAGG
1 GTTTAGG
102104298 GTTTAGG
1 GTTTAGG
102104305 GTTTAGG
1 GTTTAGG
102104312 GTTTAGG
1 GTTTAGG
102104319 GTTTTAGG
1 G-TTTAGG
102104327 GTTTAGG
1 GTTTAGG
102104334 GTTTAGG
1 GTTTAGG
102104341 GTTTAGG
1 GTTTAGG
102104348 GTTTAGG
1 GTTTAGG
102104355 GTTTAGG
1 GTTTAGG
102104362 GTTTA-G
1 GTTTAGG
102104368 GTTTAGG
1 GTTTAGG
102104375 G--TAGG
1 GTTTAGG
102104380 GTTTAGG
1 GTTTAGG
102104387 GTTTAGG
1 GTTTAGG
102104394 GTTTAGG
1 GTTTAGG
102104401 GTTTAGG
1 GTTTAGG
102104408 GTTTTAGG
1 G-TTTAGG
102104416 GTTTAGG
1 GTTTAGG
102104423 G-TTAGG
1 GTTTAGG
102104429 GTTTAGG
1 GTTTAGG
102104436 GTTTAGG
1 GTTTAGG
102104443 GTTTAGGG
1 GTTTA-GG
102104451 GTTTAGG
1 GTTTAGG
102104458 GTTTAGG
1 GTTTAGG
102104465 GTTTAGG
1 GTTTAGG
102104472 GTTTAGG
1 GTTTAGG
102104479 GTTTTAGG
1 G-TTTAGG
102104487 GTTTAGG
1 GTTTAGG
102104494 GTTTAGG
1 GTTTAGG
102104501 GTTTAGG
1 GTTTAGG
102104508 GTTTAGG
1 GTTTAGG
102104515 GTTTAGG
1 GTTTAGG
102104522 GTTTAGG
1 GTTTAGG
102104529 GTTTAGG
1 GTTTAGG
102104536 GTTTTAGG
1 G-TTTAGG
102104544 GTTTTAGG
1 G-TTTAGG
102104552 GTTTTAGG
1 G-TTTAGG
102104560 GTTTAGG
1 GTTTAGG
102104567 GTTTAGG
1 GTTTAGG
102104574 GTTTAGG
1 GTTTAGG
102104581 GTTTAGG
1 GTTTAGG
102104588 G-TTAGG
1 GTTTAGG
102104594 GTTTAGG
1 GTTTAGG
102104601 GTTTAGG
1 GTTTAGG
102104608 GTTTAGG
1 GTTTAGG
102104615 GTTTAGG
1 GTTTAGG
102104622 GTTTAGG
1 GTTTAGG
102104629 GTTTAGG
1 GTTTAGG
102104636 GTTTTAGG
1 G-TTTAGG
102104644 GTTTAGG
1 GTTTAGG
102104651 GTTTAGG
1 GTTTAGG
102104658 GTTTAGG
1 GTTTAGG
102104665 GTTTAGG
1 GTTTAGG
102104672 GTTTAGG
1 GTTTAGG
102104679 GTTTAGG
1 GTTTAGG
102104686 GTTTTAGG
1 G-TTTAGG
102104694 GTTTAGG
1 GTTTAGG
102104701 GTTTAGG
1 GTTTAGG
102104708 GTTTAGG
1 GTTTAGG
102104715 GTTTAGG
1 GTTTAGG
102104722 GTTTAGG
1 GTTTAGG
102104729 GTTTAGG
1 GTTTAGG
102104736 G-TTAGG
1 GTTTAGG
102104742 GTTTAGG
1 GTTTAGG
102104749 GTTTAGG
1 GTTTAGG
102104756 GTTTAGG
1 GTTTAGG
102104763 GTTTAGG
1 GTTTAGG
102104770 G-TTAGG
1 GTTTAGG
102104776 GTTTAGG
1 GTTTAGG
102104783 GTTTAGG
1 GTTTAGG
102104790 GTTTAGG
1 GTTTAGG
102104797 GTTTAGG
1 GTTTAGG
102104804 GTTTAGG
1 GTTTAGG
102104811 GTTTAGG
1 GTTTAGG
102104818 GTTTAGG
1 GTTTAGG
102104825 GTTTAGG
1 GTTTAGG
102104832 GTTTAGG
1 GTTTAGG
102104839 GTTTAAGG
1 GTTT-AGG
102104847 GTTTAGG
1 GTTTAGG
102104854 GTTTAGG
1 GTTTAGG
102104861 GTTTAGG
1 GTTTAGG
102104868 GTTTAGG
1 GTTTAGG
102104875 GTTTAGG
1 GTTTAGG
102104882 GTTTAGG
1 GTTTAGG
102104889 G-TTAGG
1 GTTTAGG
102104895 GTTTTAGG
1 G-TTTAGG
102104903 GTTTAGG
1 GTTTAGG
102104910 GTTTAGG
1 GTTTAGG
102104917 GTTTAGG
1 GTTTAGG
102104924 GTTTAGG
1 GTTTAGG
102104931 GTTTAGG
1 GTTTAGG
102104938 GTTTAGG
1 GTTTAGG
102104945 GTTTTAGG
1 G-TTTAGG
102104953 GTTTAGG
1 GTTTAGG
102104960 GTTTAGG
1 GTTTAGG
102104967 GTTTAGG
1 GTTTAGG
102104974 GTTTAGG
1 GTTTAGG
102104981 GTTTAGG
1 GTTTAGG
102104988 GTTTAGG
1 GTTTAGG
102104995 GTTTAGG
1 GTTTAGG
102105002 GTTTAGG
1 GTTTAGG
102105009 GTTTAGG
1 GTTTAGG
102105016 GTTTAGG
1 GTTTAGG
102105023 GTTTAGG
1 GTTTAGG
102105030 GTTTAGG
1 GTTTAGG
102105037 GTTT-GG
1 GTTTAGG
102105043 GTTTAGG
1 GTTTAGG
102105050 GTTTAGG
1 GTTTAGG
102105057 GTTTAGG
1 GTTTAGG
102105064 GTTTAGG
1 GTTTAGG
102105071 GTTTAGG
1 GTTTAGG
102105078 GTTTAGG
1 GTTTAGG
102105085 GTTTAGG
1 GTTTAGG
102105092 GTTTAGG
1 GTTTAGG
102105099 GTTTAGG
1 GTTTAGG
102105106 GTTTAGG
1 GTTTAGG
102105113 GTTTAGG
1 GTTTAGG
102105120 GTTTAGG
1 GTTTAGG
102105127 GTTTAGG
1 GTTTAGG
102105134 GTTTAGG
1 GTTTAGG
102105141 GTTTAGG
1 GTTTAGG
102105148 GTTTAGG
1 GTTTAGG
102105155 GTTTAGG
1 GTTTAGG
102105162 G-TTAGG
1 GTTTAGG
102105168 GTTTAGG
1 GTTTAGG
102105175 GTTTAGG
1 GTTTAGG
102105182 GTTTAGG
1 GTTTAGG
102105189 GTTTTAGG
1 G-TTTAGG
102105197 GTTTAGG
1 GTTTAGG
102105204 GTTTAGG
1 GTTTAGG
102105211 GTTTAGG
1 GTTTAGG
102105218 GTTTAAGG
1 GTTT-AGG
102105226 GTTTAGG
1 GTTTAGG
102105233 GTTTAGG
1 GTTTAGG
102105240 GTTTAGG
1 GTTTAGG
102105247 GTTTAGG
1 GTTTAGG
102105254 GTTTAAGG
1 GTTT-AGG
102105262 GTTTTAGG
1 G-TTTAGG
102105270 GTTTTAGG
1 G-TTTAGG
102105278 GTTTAGG
1 GTTTAGG
102105285 GTTTAGG
1 GTTTAGG
102105292 GTTTAGG
1 GTTTAGG
102105299 GTTTAGG
1 GTTTAGG
102105306 GTTTAGG
1 GTTTAGG
102105313 GTTTAGG
1 GTTTAGG
102105320 GTTTAGG
1 GTTTAGG
102105327 GTTTAGG
1 GTTTAGG
102105334 GTTTAGG
1 GTTTAGG
102105341 GTTTAGG
1 GTTTAGG
102105348 GTTTAGG
1 GTTTAGG
102105355 GTTTTAGG
1 G-TTTAGG
102105363 GTTTAGG
1 GTTTAGG
102105370 GTTTAGG
1 GTTTAGG
102105377 G-TTAGG
1 GTTTAGG
102105383 GTTTAGG
1 GTTTAGG
102105390 GTTTAGG
1 GTTTAGG
102105397 GTTTAGG
1 GTTTAGG
102105404 GTTTAGG
1 GTTTAGG
102105411 GTTTAGG
1 GTTTAGG
102105418 GTTT-GG
1 GTTTAGG
102105424 GTTTAGG
1 GTTTAGG
102105431 GTTTTAGG
1 G-TTTAGG
102105439 GTTTAGG
1 GTTTAGG
102105446 GTTTAGG
1 GTTTAGG
102105453 GTTTTAGG
1 G-TTTAGG
102105461 GTTTAGG
1 GTTTAGG
102105468 GTTTAGG
1 GTTTAGG
102105475 GTTTTAGG
1 G-TTTAGG
102105483 GTTTAGG
1 GTTTAGG
102105490 GTTTTAGG
1 G-TTTAGG
102105498 GTTTAGG
1 GTTTAGG
102105505 GTTTTAGG
1 G-TTTAGG
102105513 GTTTAGG
1 GTTTAGG
102105520 GTTTAGG
1 GTTTAGG
102105527 GTTTAGG
1 GTTTAGG
102105534 GTTTAGG
1 GTTTAGG
102105541 GTTTAGG
1 GTTTAGG
102105548 G-TTAGG
1 GTTTAGG
102105554 GTTTAGG
1 GTTTAGG
102105561 GTTTAGG
1 GTTTAGG
102105568 GTTTAGG
1 GTTTAGG
102105575 GTTTTAGG
1 G-TTTAGG
102105583 GTTTAGG
1 GTTTAGG
102105590 GTTTAGG
1 GTTTAGG
102105597 GTTTAGG
1 GTTTAGG
102105604 GTTTAGG
1 GTTTAGG
102105611 GTTTAGG
1 GTTTAGG
102105618 GTTT-GG
1 GTTTAGG
102105624 GTTTAGG
1 GTTTAGG
102105631 GTTTAGG
1 GTTTAGG
102105638 GTTTAGG
1 GTTTAGG
102105645 GTTTAGG
1 GTTTAGG
102105652 GTTTAGG
1 GTTTAGG
102105659 GTTTAGG
1 GTTTAGG
102105666 GTTT--G
1 GTTTAGG
102105671 GTTTAGG
1 GTTTAGG
102105678 GTTTAGG
1 GTTTAGG
102105685 GTTTAGG
1 GTTTAGG
102105692 GTTTAGG
1 GTTTAGG
102105699 GTTTAGG
1 GTTTAGG
102105706 GTTTTTAGG
1 G--TTTAGG
102105715 GTTTAGG
1 GTTTAGG
102105722 GTTTAGG
1 GTTTAGG
102105729 GTTT-GAG
1 GTTTAG-G
102105736 GTTTAGG
1 GTTTAGG
102105743 GTTTAGGGGG
1 GTTTA---GG
102105753 GTTTAGG
1 GTTTAGG
102105760 GTTTAGG
1 GTTTAGG
102105767 GTTTAGG
1 GTTTAGG
102105774 GTTTAGG
1 GTTTAGG
102105781 GTTTAGG
1 GTTTAGG
102105788 GTTTAGG
1 GTTTAGG
*
102105795 TTTTAGG
1 GTTTAGG
102105802 GTTTAGG
1 GTTTAGG
102105809 GTTTAGG
1 GTTTAGG
102105816 GTTTAGG
1 GTTTAGG
102105823 GTTTAGG
1 GTTTAGG
102105830 GTTTTAGG
1 G-TTTAGG
102105838 GTTTAGG
1 GTTTAGG
102105845 GTTTTAGG
1 G-TTTAGG
102105853 GTTTAGG
1 GTTTAGG
*
102105860 TTTTAGG
1 GTTTAGG
102105867 GTTTAGG
1 GTTTAGG
102105874 GTTTAGG
1 GTTTAGG
102105881 GTTTAGG
1 GTTTAGG
102105888 GTTTAGG
1 GTTTAGG
102105895 GTTTAGG
1 GTTTAGG
102105902 GTTTAGG
1 GTTTAGG
102105909 GTTTAGG
1 GTTTAGG
102105916 GTTTAGG
1 GTTTAGG
102105923 GTTTAGG
1 GTTTAGG
102105930 GTTTAGG
1 GTTTAGG
102105937 GTTTAGG
1 GTTTAGG
102105944 GTTTAGG
1 GTTTAGG
102105951 GTTTA-G
1 GTTTAGG
102105957 GTTTAGG
1 GTTTAGG
102105964 GTTTTAAGG
1 G-TTT-AGG
102105973 GTTTAGG
1 GTTTAGG
102105980 GTTTAGG
1 GTTTAGG
102105987 GTTTAGG
1 GTTTAGG
102105994 GTTTAGG
1 GTTTAGG
102106001 GTTTAGG
1 GTTTAGG
102106008 GTTTAGG
1 GTTTAGG
102106015 GTTTAGG
1 GTTTAGG
102106022 GTTTAGG
1 GTTTAGG
102106029 GTTTAGG
1 GTTTAGG
102106036 GTTTAGG
1 GTTTAGG
102106043 GTTTAGG
1 GTTTAGG
102106050 GTTTAGG
1 GTTTAGG
102106057 GTTTAAGG
1 GTTT-AGG
102106065 GTTTAGG
1 GTTTAGG
102106072 GTTTAGG
1 GTTTAGG
102106079 GTTTAGG
1 GTTTAGG
102106086 GTTTAGG
1 GTTTAGG
102106093 GTTTAGG
1 GTTTAGG
102106100 GTTTAGG
1 GTTTAGG
102106107 GTTTAGG
1 GTTTAGG
102106114 GTTTAGG
1 GTTTAGG
102106121 GTTTAGG
1 GTTTAGG
102106128 GTTTAGG
1 GTTTAGG
102106135 GTTTAGG
1 GTTTAGG
102106142 GTTTAGG
1 GTTTAGG
102106149 GTTTAGG
1 GTTTAGG
102106156 GTTTAGG
1 GTTTAGG
102106163 GTTTAGG
1 GTTTAGG
102106170 GTTTTAGG
1 G-TTTAGG
102106178 GTTTAAAGG
1 GTTT--AGG
102106187 GTTTAGG
1 GTTTAGG
102106194 G-TTAGG
1 GTTTAGG
102106200 GTTTAGG
1 GTTTAGG
102106207 GTTTAGG
1 GTTTAGG
102106214 GTTTAGG
1 GTTTAGG
102106221 GTTTAGG
1 GTTTAGG
102106228 GTTTTAGG
1 G-TTTAGG
102106236 GTTTAGG
1 GTTTAGG
102106243 GTTTAGG
1 GTTTAGG
102106250 GTTTAGG
1 GTTTAGG
102106257 GTTTAGG
1 GTTTAGG
102106264 GTTTAGG
1 GTTTAGG
102106271 GTTTAGG
1 GTTTAGG
102106278 GTTTAGG
1 GTTTAGG
102106285 GTTTAGAAG
1 GTTTAG--G
102106294 GTTTAGG
1 GTTTAGG
102106301 GTTTAGG
1 GTTTAGG
102106308 GTTTAGG
1 GTTTAGG
102106315 GTTTAGG
1 GTTTAGG
102106322 GTTTAGG
1 GTTTAGG
102106329 GTTTA-G
1 GTTTAGG
102106335 GTTTAGG
1 GTTTAGG
102106342 GTTTAGG
1 GTTTAGG
102106349 GTTTAGG
1 GTTTAGG
102106356 GTTTAGG
1 GTTTAGG
102106363 GTTTAGG
1 GTTTAGG
102106370 GTTTA
1 GTTTA
Statistics
Matches: 5289, Mismatches: 113, Indels: 276
0.93 0.02 0.05
Matches are distributed among these distances:
5 19 0.00
6 261 0.05
7 4504 0.85
8 448 0.08
9 35 0.01
10 22 0.00
ACGTcount: A:0.13, C:0.01, G:0.44, T:0.42
Consensus pattern (7 bp):
GTTTAGG
Found at i:102101002 original size:6 final size:6
Alignment explanation
Indices: 102100993--102101018 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
102100983 TTTTAAAGGT
102100993 TTAGGG TTAGGG TTAGGG TTAGGG TT
1 TTAGGG TTAGGG TTAGGG TTAGGG TT
102101019 TTAGGGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.46, T:0.38
Consensus pattern (6 bp):
TTAGGG
Done.