Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 39 of 311
Found at i:11124241 original size:36 final size:38
Alignment explanation
Indices: 11124144--11124246 Score: 144
Period size: 36 Copynumber: 2.8 Consensus size: 38
11124134 AATCATATCT
**
11124144 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
11124181 TCTAAGATTG--TATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
*
11124217 TCTAAGATTGCATATCAT-T-GAAGATTATAT
1 TCTAAGATTGCATATCATATCTAAGATTATAT
11124247 TTCCATATGA
Statistics
Matches: 60, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
35 17 0.28
36 26 0.43
37 11 0.18
38 6 0.10
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.39
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTATATATCATA
Found at i:11124394 original size:21 final size:22
Alignment explanation
Indices: 11124354--11124395 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
11124344 TGGACTTTGT
* *
11124354 TTTTTTTTTTTGGAGTTTATTA
1 TTTTTGTTTTTGGAGCTTATTA
11124376 TTTTTGTTTTTGGA-CTTATT
1 TTTTTGTTTTTGGAGCTTATT
11124396 TCTGGGCCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.12, C:0.02, G:0.14, T:0.71
Consensus pattern (22 bp):
TTTTTGTTTTTGGAGCTTATTA
Found at i:11124647 original size:45 final size:45
Alignment explanation
Indices: 11124601--11124787 Score: 205
Period size: 45 Copynumber: 4.2 Consensus size: 45
11124591 TGCTATATTT
*
11124601 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTT
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * **
11124646 GATCTGCTCCTCGTATAATACAGAGACGCCCAATCTACT-TCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * * *
11124690 AATCTGTTCCCCATCTAATACAGAGATGCCAAATCTGTTATCTCC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * * * * *
11124735 GATTTGTTCCCCGTCTAATATAGAGATGCCAAATCTGTCATATTG
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
11124780 GATCTGCT
1 GATCTGCT
11124788 TCGATGTAAA
Statistics
Matches: 115, Mismatches: 26, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
44 34 0.30
45 81 0.70
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (45 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
Found at i:11124754 original size:89 final size:89
Alignment explanation
Indices: 11124602--11124770 Score: 230
Period size: 89 Copynumber: 1.9 Consensus size: 89
11124592 GCTATATTTG
* ** *
11124602 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCCTCGTATAATAC
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTATAATAC
*
11124667 AGAGACGCCCAATCTACTTCTTCA
66 AGAGACGCCAAATCTACTTCTTCA
* * * * * *
11124691 ATCTGTTCCCCATCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGTTCCCCGTCTAATAT
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTATAATAC
*
11124756 AGAGATGCCAAATCT
66 AGAGACGCCAAATCT
11124771 GTCATATTGG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
89 68 1.00
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (89 bp):
ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTATAATAC
AGAGACGCCAAATCTACTTCTTCA
Found at i:11124930 original size:78 final size:77
Alignment explanation
Indices: 11124801--11125095 Score: 412
Period size: 78 Copynumber: 3.8 Consensus size: 77
11124791 ATGTAAACAC
*
11124801 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTTCCCGTCTAATACAGAGATGGCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGC-TCCCGTCTAATACAGAGATGCCAAATCATCT
*
11124866 TGGATCTGCTTTA
65 TGGATCTGCTTCA
** *
11124879 ATGAAGGTCTA-ATCTATTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAGTCATC
1 ATGAAGGTC-AGATCTGCTATGTCTTCGATCTGCTCCC-GTCTAATACAGAGATGCCAAATCATC
11124943 TTGGATCTGCTTCA
64 TTGGATCTGCTTCA
* * * *
11124957 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCATCTAATACAAAGATGCCAAAACATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCT-CCCGTCTAATACAGAGATGCCAAATCATCT
*
11125022 TGGATCTACTTCA
65 TGGATCTGCTTCA
* * **
11125035 ATGAAGGTCAGATCTGCTATGTATTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTC-CCGTCTAATACAGAGATGCCAAATC
11125096 TATTTCTTCG
Statistics
Matches: 191, Mismatches: 21, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
77 6 0.03
78 181 0.95
79 4 0.02
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (77 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCGTCTAATACAGAGATGCCAAATCATCTT
GGATCTGCTTCA
Found at i:11126407 original size:51 final size:53
Alignment explanation
Indices: 11126289--11126419 Score: 187
Period size: 54 Copynumber: 2.5 Consensus size: 53
11126279 CCTTTGGTCA
11126289 CAAGGC-CCCTTTTGTGGGTTTTCACCTTGGCCTCTCCATTTTTTTTCGAAAACT
1 CAAGGCGCCC-TTTGTGGGTTTTCACCTTGGCCTCTCCATTTTTTTTC-AAAACT
* *
11126343 TAAGGCGCCCTTTGTGGGTTTTCACCTTGGCCTCTCC-TTTTTTTT-TAAACT
1 CAAGGCGCCCTTTGTGGGTTTTCACCTTGGCCTCTCCATTTTTTTTCAAAACT
* *
11126394 CAAGGCGCTCTTTGCGGGTTTTCACC
1 CAAGGCGCCCTTTGTGGGTTTTCACC
11126420 CAGAATTCTT
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
51 28 0.39
53 8 0.11
54 32 0.45
55 3 0.04
ACGTcount: A:0.13, C:0.27, G:0.19, T:0.40
Consensus pattern (53 bp):
CAAGGCGCCCTTTGTGGGTTTTCACCTTGGCCTCTCCATTTTTTTTCAAAACT
Found at i:11135988 original size:22 final size:21
Alignment explanation
Indices: 11135954--11136010 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
11135944 AAATGTATCA
* *
11135954 ACAAATTAAATCTCTAAGATT
1 ACAAATCATATCTCTAAGATT
11135975 ACAAAATCATATCTTCTAAGATT
1 AC-AAATCATATC-TCTAAGATT
* *
11135998 GCATATCATATCT
1 ACAAATCATATCT
11136011 AATATTGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 3 0.10
22 17 0.57
23 10 0.33
ACGTcount: A:0.42, C:0.18, G:0.05, T:0.35
Consensus pattern (21 bp):
ACAAATCATATCTCTAAGATT
Found at i:11135996 original size:23 final size:22
Alignment explanation
Indices: 11135966--11136010 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
11135956 AAATTAAATC
11135966 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
11135989 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
11136011 AATATTGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:11136017 original size:19 final size:19
Alignment explanation
Indices: 11135989--11136042 Score: 85
Period size: 17 Copynumber: 2.9 Consensus size: 19
11135979 AATCATATCT
11135989 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
11136008 TCTAATATTG--TATCATA
1 TCTAAGATTGCATATCATA
11136025 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
11136043 TGAAGATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.52
19 15 0.48
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:11137818 original size:39 final size:39
Alignment explanation
Indices: 11137774--11137947 Score: 285
Period size: 39 Copynumber: 4.5 Consensus size: 39
11137764 CGGGACTTTA
* * * *
11137774 AGCCCGAATATAATACCAGCACAAATACCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
11137813 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
*
11137852 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
*
11137891 AGCCCAGATATAACACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
*
11137930 AGCCTGGATATAACACCA
1 AGCCCGGATATAACACCA
11137948 AATCATATAA
Statistics
Matches: 126, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 126 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
Found at i:11139956 original size:19 final size:19
Alignment explanation
Indices: 11139932--11139972 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
11139922 GTTATAATAT
*
11139932 TAATATTCCTTTAATATTA
1 TAATATTCATTTAATATTA
*
11139951 TAATATTCATTTGATATTA
1 TAATATTCATTTAATATTA
11139970 TAA
1 TAA
11139973 AACAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.51
Consensus pattern (19 bp):
TAATATTCATTTAATATTA
Found at i:11142040 original size:14 final size:15
Alignment explanation
Indices: 11142013--11142041 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
11142003 AATCTAATGA
11142013 ATTTCATGATGTATT
1 ATTTCATGATGTATT
11142028 ATTTCAT-ATGTATT
1 ATTTCATGATGTATT
11142042 GATGATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (15 bp):
ATTTCATGATGTATT
Found at i:11142224 original size:50 final size:51
Alignment explanation
Indices: 11142157--11142285 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
11142147 GACCATGGAA
11142157 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
11142208 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
11142258 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
11142286 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:11142299 original size:31 final size:31
Alignment explanation
Indices: 11142261--11142408 Score: 228
Period size: 31 Copynumber: 4.8 Consensus size: 31
11142251 ACAAATGACA
*
11142261 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
11142292 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
11142323 AGTGAAAAGTGGTAG-TTCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* *
11142354 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
11142385 AGTGAATAGT-GTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
11142409 AAGTGACAAG
Statistics
Matches: 108, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
30 16 0.15
31 90 0.83
32 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:11142566 original size:42 final size:42
Alignment explanation
Indices: 11142480--11142577 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
11142470 TATGTGATTC
* *
11142480 GTGTAAGACCATAGCTAGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTAGGCTATGACATCGATATATGAAGAT
* * *
11142522 GTGTAAGACCATAGCTGGGTTATGACATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTAGGCTATGACATCGA-TATATGAAGAT
11142564 GTGTAAGACCATAG
1 GTGTAAGACCATAG
11142578 TTGAACTATG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 1 0.02
42 49 0.98
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATAGCTAGGCTATGACATCGATATATGAAGAT
Found at i:11143611 original size:20 final size:20
Alignment explanation
Indices: 11143575--11143612 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11143565 ATGGACTTCG
**
11143575 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
11143595 TTTTTTTTTGGACTTATT
1 TTTTTTTTTGGACTTATT
11143613 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.03, G:0.13, T:0.74
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:11145685 original size:17 final size:17
Alignment explanation
Indices: 11145663--11145695 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
11145653 GATATGATAC
11145663 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
11145680 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
11145696 AATCAGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:11145696 original size:18 final size:17
Alignment explanation
Indices: 11145663--11145696 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
11145653 GATATGATAC
*
11145663 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
11145680 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
11145697 ATCAGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:11145987 original size:22 final size:21
Alignment explanation
Indices: 11145962--11146027 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 21
11145952 TGCAAATTAA
11145962 ATCTCTAAGATTACAAAATCAT
1 ATCTCTAAGATTAC-AAATCAT
* *
11145984 ATCTTCTAAGATTGCATATCAT
1 ATC-TCTAAGATTACAAATCAT
*
11146006 A--TCTAAGATTGC-AATCAT
1 ATCTCTAAGATTACAAATCAT
11146024 ATCT
1 ATCT
11146028 AAGATTGTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 6 0.16
19 11 0.29
20 1 0.03
22 10 0.26
23 10 0.26
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (21 bp):
ATCTCTAAGATTACAAATCAT
Found at i:11145995 original size:23 final size:22
Alignment explanation
Indices: 11145965--11146009 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
11145955 AAATTAAATC
11145965 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
11145988 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
11146010 AAGATTGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:11146044 original size:35 final size:37
Alignment explanation
Indices: 11145981--11146078 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
11145971 ATTACAAAAT
11145981 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
11146017 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
11146052 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
11146079 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:11146086 original size:17 final size:19
Alignment explanation
Indices: 11145988--11146078 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
11145978 AATCATATCT
11145988 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
11146007 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
11146025 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
11146042 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
11146061 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
11146079 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:11146594 original size:89 final size:90
Alignment explanation
Indices: 11146429--11146612 Score: 226
Period size: 89 Copynumber: 2.1 Consensus size: 90
11146419 AGAAGGCGAT
** * * *
11146429 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACGGAGACACCAAACCTATTTTCTTCGATCTAC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACACCAAACCTATTATCTCCGATCTAC
* *
11146494 TCCCTGTCTAATACAGAGACGCCGA
66 TCCCCGTCTAATACAGAGACGCCAA
** * * * *
11146519 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACACCAAACCTATTATCTCCGATCTAC
* *
11146583 TCCCCGTCTAATATAGAGATGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
11146608 ATCTG
1 ATCTG
11146613 TCATCTTGGA
Statistics
Matches: 79, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
89 72 0.91
90 7 0.09
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACACCAAACCTATTATCTCCGATCTAC
TCCCCGTCTAATACAGAGACGCCAA
Found at i:11146601 original size:45 final size:45
Alignment explanation
Indices: 11146429--11146628 Score: 222
Period size: 45 Copynumber: 4.5 Consensus size: 45
11146419 AGAAGGCGAT
* * * *
11146429 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACGGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * *
11146474 ACCTATTTTCTTCGATCTACTCCCTGTCTAATACAGAGACGCCGA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
11146519 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
11146563 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATATAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
11146608 ATCTGTCATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
11146629 TCGATGTAAA
Statistics
Matches: 127, Mismatches: 27, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
44 38 0.30
45 89 0.70
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:11146867 original size:77 final size:78
Alignment explanation
Indices: 11146642--11146935 Score: 405
Period size: 78 Copynumber: 3.8 Consensus size: 78
11146632 ATGTAAACAC
* *
11146642 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCTAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* *
11146707 TGGATTTGTTTCA
66 TGGATCTGCTTCA
* * * *
11146720 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTACTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
11146784 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
11146798 ATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCT-CCCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
11146862 TGGATCTTCTTCA
66 TGGATCTGCTTCA
* * * *
11146875 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCTCCGT-TGAATATAGAGATGCAAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCT-AATACAGAGATGCCAAATC
11146936 TGTTTCTTCG
Statistics
Matches: 191, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
77 75 0.39
78 114 0.60
79 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:11146925 original size:155 final size:156
Alignment explanation
Indices: 11146642--11146935 Score: 425
Period size: 155 Copynumber: 1.9 Consensus size: 156
11146632 ATGTAAACAC
* *
11146642 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCTAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAAAGATGCCAAATCATCT
* * *
11146707 TGGATTTGTTTCAATGAAGGTCCAATCTGTTATGTCTTTGATCTACTCCCCGTCTAATATAGAGA
66 TGGATTTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCTACTCCCCGTCTAATATAGAGA
*
11146772 TGCCAAATCATCTTGGATCTGCTTCA
131 TGCAAAATCATCTTGGATCTGCTTCA
* * *
11146798 ATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCT-CCCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAAAGATGCCAAATCATCT
* * *
11146862 TGGATCTT-CTTCAATGAAGGT-CAGATCTGCTGTGTCTTCGATCTGCTCTCCGT-TGAATATAG
66 TGGAT-TTGCTTCAATGAAGGTCCA-ATCTGCTATGTCTTCGATCTACTCCCCGTCT-AATATAG
11146924 AGATGCAAAATC
128 AGATGCAAAATC
11146936 TGTTTCTTCG
Statistics
Matches: 123, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
154 3 0.02
155 86 0.70
156 34 0.28
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (156 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAAAGATGCCAAATCATCT
TGGATTTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCTACTCCCCGTCTAATATAGAGA
TGCAAAATCATCTTGGATCTGCTTCA
Found at i:11147226 original size:78 final size:78
Alignment explanation
Indices: 11147097--11147467 Score: 548
Period size: 78 Copynumber: 4.8 Consensus size: 78
11147087 GAAAACATCC
* * * *
11147097 GAAGGTTAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTG
11147162 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* *
11147175 GAAGGTCAGATTTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATTATCTTG
1 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTG
11147240 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * * *
11147253 GAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATCTTG
1 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTG
11147318 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* *
11147331 GAAGGTCAGATCTGTTGTGTCTTCAATCTGCT-CCCTGTCTAATACAGAGATGCCAAATCATCTT
1 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCT-TCTAATACAGAGATGCCAAATCATCTT
11147395 GGATCTGCTTCAAT
65 GGATCTGCTTCAAT
* * * * **
11147409 GAAGGTCAGATCTGCTATGTCTTCGATTTGCT-CTCTGTCGAATATGGAGATGCCAAATC
1 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCT-TCTAATACAGAGATGCCAAATC
11147468 TATTTCTTTG
Statistics
Matches: 272, Mismatches: 20, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
77 3 0.01
78 269 0.99
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (78 bp):
GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAAT
Found at i:11147645 original size:532 final size:531
Alignment explanation
Indices: 11146642--11147921 Score: 2114
Period size: 532 Copynumber: 2.4 Consensus size: 531
11146632 ATGTAAACAC
* * *
11146642 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCTAAATCATCT
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCT
* * * * *
11146707 TGGATTTGTTTCAATGAAGGTCCA-ATCTGTTATGTCTTTGATCTACTCCCCGTCTAATATAGAG
66 TGGATCTGCTTCAATGAAGGT-CAGATCTGTTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAG
11146771 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCG
130 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCG
* *
11146836 TCTAATACAAAGATGCCAAATCATCTTGGATCTTCTTCAATGAAGGTCAGATCTGCTGTGTCTTC
195 TCTAATACAAAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTC
* *
11146901 GATCTGCTCTCCGTTGAATATAGAGATGCAAAATCTGTTTCTTCGATTTGTTCTCTGACAGTACA
260 GATCTGCTCTCCGTCGAATATAGAGATGCAAAATCTATTTCTTCGATTTGTTCTCTGACAGTACA
* *
11146966 GAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTGTT
325 GAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATATCTT
* *
11147031 CGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGTTGTGAAAACATC
390 CGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATC
*
11147096 CGAAGGTTAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
455 CGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
11147161 GGATCTGCTTCA
520 GGATCTGCTTCA
* *
11147173 ATGAAGGTCAGATTTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATTATCT
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCT
**
11147238 TGGATCTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGA
66 TGGATCTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGA
* * * *
11147303 TGCCAAATTATCTTGGATCTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCTG
131 TGCCAAATCATCTTGGATCTGCTTCAATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCC-G
*
11147368 TCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTC
195 TCTAATACAAAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTC
* * * * *
11147433 GATTTGCTCTCTGTCGAATATGGAGATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAGTACA
260 GATCTGCTCTCCGTCGAATATAGAGATGCAAAATCTATTTCTTCGATTTGTTCTCTGACAGTACA
* *
11147498 GAGATTCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTTCTATATCTT
325 GAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATATCTT
11147563 CGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATC
390 CGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATC
11147628 CGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
455 CGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
*
11147693 TGATCTGCTTCA
520 GGATCTGCTTCA
* * *
11147705 ATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCTCCTTCTAATACAGAGATTCCAAATCATCT
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCT
* * *
11147770 TGGATCTGCTTCAATGAAGGTCAGATCTGCTGTATCTTTGATCTGCTCCCCGTCTAATACAAAGA
66 TGGATCTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGA
* *
11147835 TGCCAAATCATCTTGGATCTACTTCAATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCG
131 TGCCAAATCATCTTGGATCTGCTTCAATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTC-CCG
**
11147900 T-TGAATATGAAGATGCCAAATC
195 TCT-AATACAAAGATGCCAAATC
11147922 TGTTTCTTCG
Statistics
Matches: 692, Mismatches: 53, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
530 2 0.00
531 175 0.25
532 513 0.74
533 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (531 bp):
ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGA
TGCCAAATCATCTTGGATCTGCTTCAATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCGT
CTAATACAAAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCG
ATCTGCTCTCCGTCGAATATAGAGATGCAAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAG
AGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATATCTTC
GATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATCC
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCA
Found at i:11147652 original size:454 final size:454
Alignment explanation
Indices: 11146731--11148141 Score: 1632
Period size: 454 Copynumber: 3.1 Consensus size: 454
11146721 TGAAGGTCCA
* * * *
11146731 ATCTGTTATGTCTTTGATCTACTCCCCGTCTAATATAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
* * * *
11146796 CAATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCT-CCCGTCTAATACAAAGATGCCAAATCAT
66 CAATGAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
* * * * * *
11146860 CTTGGATCTTCTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCTCCGT-TGAATATAG
131 CTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTATCTTCAATCTGCTCCCCGTCT-AATACAA
* * * ** ** ** * * *
11146924 AGATGCAAAATCTGTTTCTTCGAT-TTGTTCTCTGACA-GTACAGAGATGCCAAATCATCTTAGA
195 AGATGCCAAATC---ATCTTGGATCTACTTCAATGA-AGGT-CAGATCTG-C-TAT-GTCTTCGA
* * * * * *
11146987 TCTGCT-TCAGCGT-AAACACGTGAA-A-GCCAAATCTGCTATGTGTTCGATCTGCTC-CTTGTA
252 TCTGCTCTC--CGTCGAATA--TGAAGATGCCAAA--T-CTATTTCTTCGATTTGTTCTC-TG-A
* * * * * * * ** *
11147047 AACGCA-AG-GATGCCAAATCATCTTGGATCTACTTC-GTTGTGAAAACATC-CGAAGGTTAGAT
308 CA-GTACAGAGATGCCAAATCATCTTAGATCTGCTTCAG-CGT--AAACA-CGTGAAAGCCAAAT
* * ** * *
11147108 CTGCTATGTCTTTGATCTGCTCCCCGTCTAATAC-AGAGATGCCAAATCATCTTGGATC----T-
368 CTGCTATATCTTCGATCTGCTCCTTGT-AAACACAAG-GATGCCAAATCATCTTGGATCTAATTC
* * *
11147167 GCT-T---CA-AT--GAAGGTCAG
431 GATGTGAAAACATCCGAAGGTTAG
* * * *
11147184 ATTTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATTATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
11147249 CAATGAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATTAT
66 CAATGAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
* * * *
11147314 CTTGGATCTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCTGTCTAATACAGA
131 CTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTATCTTCAATCTGCTCCCCGTCTAATACAAA
* *
11147379 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCTC
196 GATGCCAAATCATCTTGGATCTACTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC
* * * *
11147444 TGTCGAATATGGAGATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAGTACAGAGATTCCAAA
261 CGTCGAATATGAAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAA
*
11147509 TCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTTCTATATCTTCGATCTGCTCC
326 TCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATATCTTCGATCTGCTCC
*
11147574 TTGTAAACGCAAGGATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATCCGAAGGTTAG
391 TTGTAAACACAAGGATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATCCGAAGGTTAG
*
11147638 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTTGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
* * * *
11147703 CAATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCTCCTTCTAATACAGAGATTCCAAATCAT
66 CAATGAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
**
11147768 CTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTATCTTTGATCTGCTCCCCGTCTAATACAAA
131 CTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTATCTTCAATCTGCTCCCCGTCTAATACAAA
*
11147833 GATGCCAAATCATCTTGGATCTACTTCAATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTC
196 GATGCCAAATCATCTTGGATCTACTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC
* * *
11147898 CGTTGAATATGAAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAGTATAGAGATGCCAAA
261 CGTCGAATATGAAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAA
*
11147963 TCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCC
326 TCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATATCTTCGATCTGCTCC
* *
11148028 TTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCTGAAGGTTAG
391 TTGTAAACACAAGGATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATCCGAAGGTTAG
* * * **
11148092 ATCTGCTATGTCTTCGATATGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
11148142 TGTTTCTTTG
Statistics
Matches: 833, Mismatches: 99, Indels: 51
0.85 0.10 0.05
Matches are distributed among these distances:
442 25 0.03
443 38 0.05
444 4 0.00
445 42 0.05
446 7 0.01
447 5 0.01
448 21 0.03
449 4 0.00
450 1 0.00
451 15 0.02
452 11 0.01
453 90 0.11
454 569 0.68
455 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (454 bp):
ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
CAATGAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
CTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTATCTTCAATCTGCTCCCCGTCTAATACAAA
GATGCCAAATCATCTTGGATCTACTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC
CGTCGAATATGAAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAA
TCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATATCTTCGATCTGCTCC
TTGTAAACACAAGGATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATCCGAAGGTTAG
Found at i:11147763 original size:78 final size:78
Alignment explanation
Indices: 11147629--11147921 Score: 419
Period size: 78 Copynumber: 3.8 Consensus size: 78
11147619 GAAAACATCC
* *
11147629 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTT
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
11147694 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * * * *
11147707 GAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCTCCTTCTAATACAGAGATTCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
11147772 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * * *
11147785 GAAGGTCAGATCTGCTGTATCTTTGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
*
11147850 GATCTACTTCAAT
66 GATCTGCTTCAAT
* * *
11147863 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGT-TGAATA-TGAAGATGCCAAATC
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCT-AATACAG-AGATGCCAAATC
11147922 TGTTTCTTCG
Statistics
Matches: 191, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
77 1 0.01
78 190 0.99
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (78 bp):
GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAAT
Found at i:11151283 original size:15 final size:15
Alignment explanation
Indices: 11151263--11151292 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
11151253 CTCAATTGGC
11151263 GAATATCTCATCTCA
1 GAATATCTCATCTCA
11151278 GAATATCTCATCTCA
1 GAATATCTCATCTCA
11151293 CACTCTGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (15 bp):
GAATATCTCATCTCA
Found at i:11156261 original size:17 final size:18
Alignment explanation
Indices: 11156239--11156273 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
11156229 GATATTATAC
*
11156239 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
11156256 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
11156274 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:11156558 original size:17 final size:17
Alignment explanation
Indices: 11156536--11156594 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
11156526 ATTACAAAAT
11156536 CATATCTTCTAAGATTG
1 CATATCTTCTAAGATTG
11156553 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTG
* * *
11156572 TATAAT-ATCTAAGATTT
1 CAT-ATCTTCTAAGATTG
11156589 CATATC
1 CATATC
11156595 ATTGAAGATT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 2 0.06
17 17 0.50
18 1 0.03
19 12 0.35
20 2 0.06
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (17 bp):
CATATCTTCTAAGATTG
Found at i:11156559 original size:22 final size:23
Alignment explanation
Indices: 11156520--11156564 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
11156510 AAATTAAATC
11156520 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTACAAAATCATATCT
* *
11156543 TCTAAGATTGC-ATATCATATCT
1 TCTAAGATTACAAAATCATATCT
11156565 AAGATTGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (23 bp):
TCTAAGATTACAAAATCATATCT
Found at i:11156567 original size:19 final size:19
Alignment explanation
Indices: 11156543--11156596 Score: 76
Period size: 17 Copynumber: 2.9 Consensus size: 19
11156533 AATCATATCT
11156543 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
11156562 TCTAAGATTG--TATAATA
1 TCTAAGATTGCATATCATA
*
11156579 TCTAAGATTTCATATCAT
1 TCTAAGATTGCATATCAT
11156597 TGAAGATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 15 0.50
19 15 0.50
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:11157787 original size:20 final size:20
Alignment explanation
Indices: 11157762--11157829 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
11157752 AATTTGAATA
11157762 ATGTGAGTCCTAATTAGACT
1 ATGTGAGTCCTAATTAGACT
* ** * *
11157782 ATGTGATTTTAGTCAATTTGAAT
1 ATGTGA--GTCCT-AATTAGACT
11157805 AATGTGAGTCCTAATTAGACT
1 -ATGTGAGTCCTAATTAGACT
11157826 ATGT
1 ATGT
11157830 TTTAAATGAT
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
20 10 0.29
21 7 0.21
22 4 0.12
23 7 0.21
24 6 0.18
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (20 bp):
ATGTGAGTCCTAATTAGACT
Found at i:11157791 original size:44 final size:44
Alignment explanation
Indices: 11157741--11157829 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
11157731 TTCCCAAATA
11157741 TGATTTTAGTCAATTTGAATAATGTGAGTCCTAATTAGACTATG
1 TGATTTTAGTCAATTTGAATAATGTGAGTCCTAATTAGACTATG
11157785 TGATTTTAGTCAATTTGAATAATGTGAGTCCTAATTAGACTATG
1 TGATTTTAGTCAATTTGAATAATGTGAGTCCTAATTAGACTATG
11157829 T
1 T
11157830 TTTAAATGAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (44 bp):
TGATTTTAGTCAATTTGAATAATGTGAGTCCTAATTAGACTATG
Found at i:11159692 original size:47 final size:47
Alignment explanation
Indices: 11159570--11160309 Score: 1203
Period size: 49 Copynumber: 15.4 Consensus size: 47
11159560 TATCACAGTT
* * * *
11159570 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTATCATATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATC--ACATAC
*
11159619 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
11159666 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
11159715 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
* *
11159764 ATACACCTTCACATTCATCACAATGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
11159811 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
* *
11159858 ATACACTTTCATATTCATCACATTGGCCATTCAGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
*
11159907 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTCATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
11159956 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
11160003 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
11160050 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
* *
11160099 ATACACTTTCACATTCATCACATTGGCCATTCGGTCTCATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
*
11160148 ATACACTTTCAAATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
11160195 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
11160242 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
11160291 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
11160310 GTAACAAAAT
Statistics
Matches: 660, Mismatches: 22, Indels: 18
0.94 0.03 0.03
Matches are distributed among these distances:
47 323 0.49
49 335 0.51
50 2 0.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:11159723 original size:96 final size:96
Alignment explanation
Indices: 11159570--11160309 Score: 1251
Period size: 96 Copynumber: 7.7 Consensus size: 96
11159560 TATCACAGTT
* * * * *
11159570 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTATCATATATATATATACTTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATT
11159634 CATCACATTGGCCATTCGGCCTTATCACATAC
65 CATCACATTGGCCATTCGGCCTTATCACATAC
11159666 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
11159731 ATCACATTGGCCATTCGGCCTTATCACATATAC
66 ATCACATTGGCCATTCGGCCTTATCAC--ATAC
* *
11159764 ATACACCTTCACATTCATCACAATGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
11159827 ATCACATTGGCCATTCGGCCTTATCACATAC
66 ATCACATTGGCCATTCGGCCTTATCACATAC
* *
11159858 ATACACTTTCATATTCATCACATTGGCCATTCAGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
*
11159923 ATCACATTGGCCATTCGGCCTCATCACATATAC
66 ATCACATTGGCCATTCGGCCTTATCAC--ATAC
11159956 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
11160019 ATCACATTGGCCATTCGGCCTTATCACATAC
66 ATCACATTGGCCATTCGGCCTTATCACATAC
11160050 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
* *
11160115 ATCACATTGGCCATTCGGTCTCATCACATATAC
66 ATCACATTGGCCATTCGGCCTTATCAC--ATAC
*
11160148 ATACACTTTCAAATTCATCACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
11160211 ATCACATTGGCCATTCGGCCTTATCACATAC
66 ATCACATTGGCCATTCGGCCTTATCACATAC
11160242 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
11160307 ATC
66 ATC
11160310 GTAACAAAAT
Statistics
Matches: 610, Mismatches: 21, Indels: 26
0.93 0.03 0.04
Matches are distributed among these distances:
94 136 0.22
96 336 0.55
97 2 0.00
98 136 0.22
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (96 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:11159926 original size:27 final size:27
Alignment explanation
Indices: 11159896--11159978 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
11159886 ATTCAGCCTT
11159896 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
* * *
11159923 ATCACAT-TGGC---CA--TTCGGCCT-C
1 ATCACATAT-ACATACACTTTC-ACATTC
11159945 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
11159972 ATCACAT
1 ATCACAT
11159979 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 12 0.29
23 3 0.07
24 2 0.05
25 2 0.05
26 3 0.07
27 19 0.46
ACGTcount: A:0.33, C:0.31, G:0.05, T:0.31
Consensus pattern (27 bp):
ATCACATATACATACACTTTCACATTC
Found at i:11166052 original size:30 final size:31
Alignment explanation
Indices: 11166016--11166084 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
11166006 TATCGTATCT
11166016 TGGGTTTCTT-TATCCTGGATCTT-TTTATTC
1 TGGGTTTCTTCTATCCTGGAT-TTCTTTATTC
*
11166046 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCCTGGATTTCTTTATTC
*
11166076 -GGTTTTCTT
1 TGGGTTTCTT
11166085 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.09, C:0.14, G:0.17, T:0.59
Consensus pattern (31 bp):
TGGGTTTCTTCTATCCTGGATTTCTTTATTC
Found at i:11168536 original size:46 final size:46
Alignment explanation
Indices: 11168483--11168658 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
11168473 TATTTGGGCA
*
11168483 TCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
11168529 TCCGAACTCGTTAAGTTGAGTCCGAGCTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* **
11168574 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
11168622 TCC-AAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
11168659 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 59 0.57
47 26 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:11168639 original size:93 final size:93
Alignment explanation
Indices: 11168479--11168647 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
11168469 GGGATATTTG
* **
11168479 GGCATCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTAAG
11168544 TTGAGTCCGAGCTCGTGAGATGTAACTA
66 TTGAGTCCGAGCTCGTGAGATGTAACTA
* *
11168572 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCC-AAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAA-CTCGTTAA
11168636 GTTGAGTCCGAG
65 GTTGAGTCCGAG
11168648 TTCGCTTATG
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTAAG
TTGAGTCCGAGCTCGTGAGATGTAACTA
Found at i:11176170 original size:8 final size:8
Alignment explanation
Indices: 11176147--11176171 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
11176137 TTTAATAATA
11176147 TATTTTAT
1 TATTTTAT
11176155 TATTTTAT
1 TATTTTAT
11176163 TATTTTAT
1 TATTTTAT
11176171 T
1 T
11176172 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:11178957 original size:33 final size:33
Alignment explanation
Indices: 11178902--11179057 Score: 97
Period size: 33 Copynumber: 4.7 Consensus size: 33
11178892 AATTGACGGA
* *
11178902 TAAGACCATGGCT-GAGCCATGGCAATATATGTG
1 TAAGACCATAGCTAG-GCTATGGCAATATATGTG
* *
11178935 TAAGACCATAGCTAGGCTATGGC-ATCCTGATG-A
1 TAAGACCATAGCTAGGCTATGGCAAT-AT-ATGTG
* * * ** *
11178968 TAAGACCATATCTGGGATATGGCACCACGA-GTG
1 TAAGACCATAGCTAGGCTATGGCAATA-TATGTG
* * * *
11179001 TAAGACCATGGCTAGGCCATGGCAATACACGTG
1 TAAGACCATAGCTAGGCTATGGCAATATATGTG
*
11179034 TAAGACCATAG-TTGGACTATGGCA
1 TAAGACCATAGCTAGG-CTATGGCA
11179058 TCATACCAGA
Statistics
Matches: 92, Mismatches: 23, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
32 7 0.08
33 81 0.88
34 4 0.04
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (33 bp):
TAAGACCATAGCTAGGCTATGGCAATATATGTG
Found at i:11179181 original size:45 final size:45
Alignment explanation
Indices: 11179067--11179182 Score: 153
Period size: 45 Copynumber: 2.6 Consensus size: 45
11179057 ATCATACCAG
11179067 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGATTC
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGATTC
* * * *
11179112 AGACGAATAAGACCATAGCCGAAAGACGCTATGGCATC-GCGATTC
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAG-GATTC
* * *
11179157 AAATGTGTAAGACCATGGTTGAAAGA
1 AAATGAGTAAGACCATAGCTGAAAGA
11179183 TACCATGACA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 1 0.02
45 58 0.98
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.19
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGATTC
Found at i:11179269 original size:47 final size:46
Alignment explanation
Indices: 11179164--11179301 Score: 204
Period size: 47 Copynumber: 3.0 Consensus size: 46
11179154 TTCAAATGTG
* * *
11179164 TAAGACCATGGTTGAAAGATACCATGACAACGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* *
11179210 TAAGACCATGGTTGAAAGATAGCATGGCAACATGACGGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGGAAATGAA
* *
11179257 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGA
11179302 GTAATTTCAT
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 40 0.49
47 42 0.51
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.18
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
Found at i:11179838 original size:24 final size:23
Alignment explanation
Indices: 11179807--11179853 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
11179797 ATTACATGAT
*
11179807 TATTCTGGTGTGTTTTGGTTGGA
1 TATTCTGGTGTGTTTGGGTTGGA
11179830 TATTACTGGTGTGTTTGGGTTGGA
1 TATT-CTGGTGTGTTTGGGTTGGA
11179854 ATCCGTGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.11, C:0.04, G:0.36, T:0.49
Consensus pattern (23 bp):
TATTCTGGTGTGTTTGGGTTGGA
Found at i:11186033 original size:27 final size:27
Alignment explanation
Indices: 11186003--11186058 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
11185993 ATCATTGCTA
11186003 ATTTT-AATAATT-TTTTTAAATTTATTT
1 ATTTTAAAT-ATTATTTTT-AATTTATTT
*
11186030 ATTTTAAATATTATTTTTTATTTATTT
1 ATTTTAAATATTATTTTTAATTTATTT
11186057 AT
1 AT
11186059 ACATATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 18 0.69
28 8 0.31
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (27 bp):
ATTTTAAATATTATTTTTAATTTATTT
Found at i:11186036 original size:15 final size:15
Alignment explanation
Indices: 11186012--11186048 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
11186002 AATTTTAATA
11186012 ATTTTTTTAAAT-TT
1 ATTTTTTTAAATATT
11186026 ATTTATTTTAAATATT
1 ATTT-TTTTAAATATT
11186042 ATTTTTT
1 ATTTTTT
11186049 ATTTATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.19
15 11 0.52
16 6 0.29
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTTTTTAAATATT
Found at i:11186073 original size:24 final size:23
Alignment explanation
Indices: 11186020--11186080 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 23
11186010 TAATTTTTTT
*
11186020 AAATTTATTTATTTTAAATATTA
1 AAATTTATTTATTTTAAATATAA
*** *
11186043 TTTTTTATTTATTTATACATATAA
1 AAATTTATTTATTT-TAAATATAA
11186067 AAATTTATTTATTT
1 AAATTTATTTATTT
11186081 GTATATTATT
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
23 11 0.38
24 18 0.62
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
AAATTTATTTATTTTAAATATAA
Found at i:11186124 original size:5 final size:5
Alignment explanation
Indices: 11186106--11186220 Score: 59
Period size: 5 Copynumber: 24.0 Consensus size: 5
11186096 TATTTTCAAG
11186106 TATAT T-TA- TATAT TATAT TACT-T TATAT T-T-T TATAT TATTAT ATATAT
1 TATAT TATAT TATAT TATAT TA-TAT TATAT TATAT TATAT TA-TAT -TATAT
* * * * * *
11186154 TATAT TATCT TATGT TTTAA TATA- CAT-T ATATAT TATAT TATTT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT -TATAT TATAT TATAT TATAT
* *
11186203 TTTAT CATA- TAT-T TATAT
1 TATAT TATAT TATAT TATAT
11186221 CTTATTACAT
Statistics
Matches: 83, Mismatches: 14, Indels: 26
0.67 0.11 0.21
Matches are distributed among these distances:
3 3 0.04
4 14 0.17
5 56 0.67
6 8 0.10
7 2 0.02
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:11186132 original size:17 final size:16
Alignment explanation
Indices: 11186108--11186225 Score: 94
Period size: 17 Copynumber: 6.9 Consensus size: 16
11186098 TTTTCAAGTA
11186108 TATTTATATATTATAT
1 TATTTATATATTATAT
*
11186124 TACTTTATATTTTTATAT
1 TA-TTTATA-TATTATAT
11186142 TATTATATATATTATAT
1 TATT-TATATATTATAT
* *
11186159 TATCTTATGTTTTA-AT
1 TAT-TTATATATTATAT
*
11186175 ATACATTATATATTATAT
1 -TA-TTTATATATTATAT
*
11186193 TATTTTATATTTTATCAT
1 TA-TTTATATATTAT-AT
*
11186211 ATATTTATATCTTAT
1 -TATTTATATATTAT
11186226 TACATATTAT
Statistics
Matches: 82, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
16 4 0.05
17 47 0.57
18 29 0.35
19 2 0.02
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (16 bp):
TATTTATATATTATAT
Found at i:11186133 original size:10 final size:9
Alignment explanation
Indices: 11186108--11186220 Score: 59
Period size: 8 Copynumber: 13.0 Consensus size: 9
11186098 TTTTCAAGTA
11186108 TATTTATA-
1 TATTTATAT
11186116 TA-TTATAT
1 TATTTATAT
11186124 TACTTTATAT
1 TA-TTTATAT
11186134 T-TTTATAT
1 TATTTATAT
11186142 TA-TTATA-
1 TATTTATAT
11186149 TATATTATAT
1 TAT-TTATAT
*
11186159 TATCTTATGT
1 TAT-TTATAT
*
11186169 T-TTAATA-
1 TATTTATAT
*
11186176 TACATTATA-
1 TA-TTTATAT
11186185 TA-TTATAT
1 TATTTATAT
11186193 TATTT-TA-
1 TATTTATAT
11186200 TATTTTATCAT
1 TA-TTTAT-AT
11186211 ATATTTATAT
1 -TATTTATAT
11186221 CTTATTACAT
Statistics
Matches: 83, Mismatches: 6, Indels: 30
0.70 0.05 0.25
Matches are distributed among these distances:
7 15 0.18
8 27 0.33
9 15 0.18
10 19 0.23
11 5 0.06
12 2 0.02
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (9 bp):
TATTTATAT
Found at i:11186445 original size:22 final size:23
Alignment explanation
Indices: 11186419--11186469 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
11186409 TTATAAATTA
* *
11186419 TTATTAAGCAT-TA-TATTTATG
1 TTATTAAACATGTAGTATGTATG
11186440 TGTATTAAACATGTAGTATGTATG
1 T-TATTAAACATGTAGTATGTATG
11186464 TTATTA
1 TTATTA
11186470 TAAAATTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.04
22 9 0.36
23 7 0.28
24 8 0.32
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (23 bp):
TTATTAAACATGTAGTATGTATG
Found at i:11190243 original size:20 final size:20
Alignment explanation
Indices: 11190218--11190258 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
11190208 AAGAGAGAGT
11190218 AAGAGAAAGGAAATCTGGAA
1 AAGAGAAAGGAAATCTGGAA
11190238 AAGAGAAAGGAAATCTGGAA
1 AAGAGAAAGGAAATCTGGAA
11190258 A
1 A
11190259 CAACACATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.05, G:0.29, T:0.10
Consensus pattern (20 bp):
AAGAGAAAGGAAATCTGGAA
Found at i:11198472 original size:44 final size:44
Alignment explanation
Indices: 11198439--11198745 Score: 388
Period size: 44 Copynumber: 7.0 Consensus size: 44
11198429 CTTGCGTTTA
* *
11198439 CAAGGAGCATATCGAAGATAGCAGATTTGGCATCTCTGTATTGT
1 CAAGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
* *
11198483 C-AGAGAGCAGATCGAGGATAGCAGATTTGGTGTCTCTGTATTGT
1 CAAG-GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
* *
11198527 C-AGAGAGCAGATCGCAGATAGTAGATTTGGCGTCTCTGTATTGT
1 CAAG-GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
11198571 CAAGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
1 CAAGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
* *
11198615 CAAAGAGCAGATCGAAGATAGCAGATTTGGTGTCTCTGTATTGT
1 CAAGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
* * * * *
11198659 -TAGAGAGCAGATTGAAGATAGCAGATTTGGCGTCTCCGTACTAT
1 CAAG-GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
* * * * *
11198703 C-CGAGAGTAGATTGAAGATAGCGGATTTGACGTCTCTGTATTG
1 CAAG-GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
11198746 ATAAGGAACA
Statistics
Matches: 233, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
43 3 0.01
44 228 0.98
45 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (44 bp):
CAAGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT
Found at i:11198567 original size:88 final size:88
Alignment explanation
Indices: 11198443--11198745 Score: 428
Period size: 88 Copynumber: 3.4 Consensus size: 88
11198433 CGTTTACAAG
* * *
11198443 GAGCATATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAGGATAGCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGA
*
11198508 TTTGGTGTCTCTGTATTGTCAGA
66 TTTGGCGTCTCTGTATTGTCAGA
* *
11198531 GAGCAGATCGCAGATAGTAGATTTGGCGTCTCTGTATTGTCA-AGGAGCAGATCGAAGATAGCAG
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA-GAGCAGATCGAAGATAGCAG
*
11198595 ATTTGGCGTCTCTGTATTGTCAAA
65 ATTTGGCGTCTCTGTATTGTCAGA
* * *
11198619 GAGCAGATCGAAGATAGCAGATTTGGTGTCTCTGTATTGTTAGAGAGCAGATTGAAGATAGCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGA
* * * *
11198684 TTTGGCGTCTCCGTACTATCCGA
66 TTTGGCGTCTCTGTATTGTCAGA
* * * *
11198707 GAGTAGATTGAAGATAGCGGATTTGACGTCTCTGTATTG
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
11198746 ATAAGGAACA
Statistics
Matches: 191, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
87 1 0.01
88 189 0.99
89 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (88 bp):
GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGA
TTTGGCGTCTCTGTATTGTCAGA
Found at i:11198594 original size:132 final size:132
Alignment explanation
Indices: 11198439--11198745 Score: 454
Period size: 132 Copynumber: 2.3 Consensus size: 132
11198429 CTTGCGTTTA
* * * *
11198439 CAAGGAGCATATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAGGATAG
1 CAAGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAAAGAGCAGATCGAAGATAG
* * * *
11198504 CAGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGCAGATAGTAGATTTGGCGTCTCTGTATT
66 CAGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCCGTACT
*
11198569 GT
131 AT
11198571 CAAGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAAAGAGCAGATCGAAGATAG
1 CAAGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAAAGAGCAGATCGAAGATAG
* *
11198636 CAGATTTGGTGTCTCTGTATTGTTAGAGAGCAGATTGAAGATAGCAGATTTGGCGTCTCCGTACT
66 CAGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCCGTACT
11198701 AT
131 AT
* * * * *
11198703 C-CGAGAGTAGATTGAAGATAGCGGATTTGACGTCTCTGTATTG
1 CAAG-GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
11198746 ATAAGGAACA
Statistics
Matches: 158, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
131 1 0.01
132 157 0.99
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (132 bp):
CAAGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAAAGAGCAGATCGAAGATAG
CAGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCCGTACT
AT
Found at i:11198775 original size:132 final size:132
Alignment explanation
Indices: 11198439--11198819 Score: 381
Period size: 132 Copynumber: 2.9 Consensus size: 132
11198429 CTTGCGTTTA
* * * * * * * * *
11198439 CAAGGAGCATATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAGGATAG
1 CAAGGAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATTGTCAAAGAACAAATCGAAGAAAA
* * * * *
11198504 CAGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGCAGATAGTAGATTTGGCGTCTCTGTATT
66 CAAATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCCGTACT
*
11198569 GT
131 AT
* * * * *
11198571 CAAGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAAAGAGCAGATCGAAGATAG
1 CAAGGAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATTGTCAAAGAACAAATCGAAGAAAA
* * *
11198636 CAGATTTGGTGTCTCTGTATTGTTAGAGAGCAGATTGAAGATAGCAGATTTGGCGTCTCCGTACT
66 CAAATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCCGTACT
11198701 AT
131 AT
* * * * *
11198703 C-CGAGAGTAGATTGAAGATAGCGGATTTGACGTCTCTGTATTGAT-AAGGAACAAAATCGAA-A
1 CAAG-GAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATTG-TCAAAGAAC-AAATCGAAGA
** ** * *
11198765 AAACAAATTTGGCATCTCCATATTCGACAGAGAGCAGATCAAAGACATAGCAGAT
63 AAACAAATTTGGTGTCTCTGTATT-GTCAGAGAGCAGATCGAAG--ATAGCAGAT
11198820 CTAACCTTCG
Statistics
Matches: 213, Mismatches: 30, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
131 1 0.00
132 180 0.85
133 23 0.11
135 9 0.04
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (132 bp):
CAAGGAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATTGTCAAAGAACAAATCGAAGAAAA
CAAATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCCGTACT
AT
Found at i:11198967 original size:45 final size:45
Alignment explanation
Indices: 11198860--11199019 Score: 184
Period size: 44 Copynumber: 3.6 Consensus size: 45
11198850 GATCCAAGAT
* * *
11198860 GATTTGGCATCTTCGTATTCGACGAGGAGTAAATCCAAGAAG-TA
1 GATTTGGCATCTCCGTATTCGACGAGGAGCAAATCCAAGAAGACA
* * *
11198904 GATTTGGCAT-TCCCGTATTCGACGGGGAGCAGATCCAAGATGACA
1 GATTTGGCATCT-CCGTATTCGACGAGGAGCAAATCCAAGAAGACA
* *
11198949 GATTTGGCATCTCCGTATTCGACGAGGAACAAAACCAAGAAGAC-
1 GATTTGGCATCTCCGTATTCGACGAGGAGCAAATCCAAGAAGACA
* * *
11198993 GATTTGGCATATCTGTATTTGAC-AGGA
1 GATTTGGCATCTCCGTATTCGACGAGGA
11199020 CATAGTAGAT
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
43 5 0.05
44 55 0.56
45 38 0.38
46 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCCGTATTCGACGAGGAGCAAATCCAAGAAGACA
Found at i:11199247 original size:17 final size:17
Alignment explanation
Indices: 11199225--11199257 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11199215 CAAAAATTAA
*
11199225 AAAAATGAAATTAAACG
1 AAAAATAAAATTAAACG
11199242 AAAAATAAAATTAAAC
1 AAAAATAAAATTAAAC
11199258 AGTCCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.06, G:0.06, T:0.18
Consensus pattern (17 bp):
AAAAATAAAATTAAACG
Found at i:11200513 original size:15 final size:15
Alignment explanation
Indices: 11200489--11200522 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
11200479 AATTTTAATC
11200489 ATTTTTTTAAAT-TT
1 ATTTTTTTAAATATT
11200503 ATTTATTTTAAATATT
1 ATTT-TTTTAAATATT
11200519 ATTT
1 ATTT
11200523 GTTATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 8 0.44
16 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTTTTTAAATATT
Found at i:11200600 original size:5 final size:5
Alignment explanation
Indices: 11200582--11200696 Score: 71
Period size: 5 Copynumber: 23.0 Consensus size: 5
11200572 TATTTTCAAG
11200582 TATAT T-TA- TATAT TATAT TATAT TATAT T-T-T TATAT TATTAT ATATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT -TATAT
* * * * *
11200630 TATAT TATCT TATGT TTTAAT GTACATT ATATAT TATAT TATTT TATAT
1 TATAT TATAT TATAT TAT-AT -TATA-T -TATAT TATAT TATAT TATAT
* *
11200679 TTTAT CATA- TAT-T TATAT
1 TATAT TATAT TATAT TATAT
11200697 CTTATTACAT
Statistics
Matches: 85, Mismatches: 14, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
3 3 0.04
4 11 0.13
5 55 0.65
6 9 0.11
7 7 0.08
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:11200614 original size:25 final size:25
Alignment explanation
Indices: 11200582--11200683 Score: 86
Period size: 24 Copynumber: 4.1 Consensus size: 25
11200572 TATTTTCAAG
*
11200582 TATATTTATATATTA-TAT-TATAT
1 TATATTTTTATATTATTATATATAT
11200605 TATATTTTTATATTATTATATATAT
1 TATATTTTTATATTATTATATATAT
* * *
11200630 TATATTATCTTATGTT-TTAATGTACAT
1 TATATT-T-TTATATTATT-ATATATAT
* * *
11200657 TATA-TATTATATTATTTTATATTT
1 TATATTTTTATATTATTATATATAT
11200681 TAT
1 TAT
11200684 CATATATTTA
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
23 14 0.22
24 16 0.25
25 13 0.21
26 4 0.06
27 16 0.25
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
TATATTTTTATATTATTATATATAT
Found at i:11200846 original size:17 final size:17
Alignment explanation
Indices: 11200821--11200870 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
11200811 TATTCTTTTA
* *
11200821 TATTTTATATGTTATTT
1 TATTATATATATTATTT
*
11200838 TATTATATATATTTATAT
1 TATTATATATA-TTATTT
11200856 TATTA-ATATATTATT
1 TATTATATATATTATT
11200871 ACACTATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 4 0.14
17 14 0.50
18 10 0.36
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TATTATATATATTATTT
Found at i:11200848 original size:19 final size:17
Alignment explanation
Indices: 11200826--11200867 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
11200816 TTTTATATTT
*
11200826 TATATGTTATTTTATTATA
1 TATAT-TTATATTATTA-A
11200845 TATATTTATATTATTAA
1 TATATTTATATTATTAA
11200862 TATATT
1 TATATT
11200868 ATTACACTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.32
18 10 0.45
19 5 0.23
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (17 bp):
TATATTTATATTATTAA
Found at i:11200922 original size:22 final size:23
Alignment explanation
Indices: 11200896--11200946 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
11200886 TTATAAATTA
* *
11200896 TTATTAAGCAT-TA-TATTTATG
1 TTATTAAACATGTAGTATGTATG
11200917 TGTATTAAACATGTAGTATGTATG
1 T-TATTAAACATGTAGTATGTATG
11200941 TTATTA
1 TTATTA
11200947 TAAAATTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.04
22 9 0.36
23 7 0.28
24 8 0.32
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (23 bp):
TTATTAAACATGTAGTATGTATG
Found at i:11207001 original size:21 final size:21
Alignment explanation
Indices: 11206955--11207001 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
11206945 CGGCTTTTAT
*
11206955 TTAAAATATACAATTTAATGG
1 TTAAAATATACAATTTAAAGG
* *
11206976 CTAAAATCT-CAATTTTAAAGG
1 TTAAAATATACAA-TTTAAAGG
11206997 TTAAA
1 TTAAA
11207002 TAACATTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (21 bp):
TTAAAATATACAATTTAAAGG
Found at i:11209904 original size:8 final size:8
Alignment explanation
Indices: 11209889--11209937 Score: 62
Period size: 8 Copynumber: 5.8 Consensus size: 8
11209879 TTAGAAGAAT
11209889 AAAAATAA
1 AAAAATAA
*
11209897 ATAAATAA
1 AAAAATAA
11209905 CAAAAATAA
1 -AAAAATAA
11209914 AAAAATAA
1 AAAAATAA
11209922 AGAGAAATAA
1 A-A-AAATAA
11209932 AAAAAT
1 AAAAAT
11209938 GAATTAAACC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
8 20 0.56
9 9 0.25
10 7 0.19
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (8 bp):
AAAAATAA
Found at i:11209929 original size:18 final size:17
Alignment explanation
Indices: 11209889--11209937 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
11209879 TTAGAAGAAT
*
11209889 AAAAATAAATAAATAAC
1 AAAAATAAAAAAATAAC
11209906 AAAAATAAAAAAATAA-
1 AAAAATAAAAAAATAAC
11209922 AGAGAAATAAAAAAAT
1 A-A-AAATAAAAAAAT
11209938 GAATTAAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 1 0.03
17 16 0.55
18 12 0.41
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (17 bp):
AAAAATAAAAAAATAAC
Found at i:11213828 original size:24 final size:24
Alignment explanation
Indices: 11213796--11213842 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
11213786 ACACCTTCAT
*
11213796 ATACATATACACATGAACACATAC
1 ATACATATACACATAAACACATAC
*
11213820 ATACTTATACACATAAACACATA
1 ATACATATACACATAAACACATA
11213843 TACACAAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.51, C:0.23, G:0.02, T:0.23
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:11213841 original size:8 final size:8
Alignment explanation
Indices: 11213798--11213848 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
11213788 ACCTTCATAT
11213798 ACATATAC
1 ACATATAC
11213806 ACATGA-AC
1 ACAT-ATAC
* *
11213814 ACATACAT
1 ACATATAC
*
11213822 ACTTATAC
1 ACATATAC
*
11213830 ACATAAAC
1 ACATATAC
11213838 ACATATAC
1 ACATATAC
11213846 ACA
1 ACA
11213849 AACCTTCCAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
7 1 0.03
8 32 0.94
9 1 0.03
ACGTcount: A:0.51, C:0.25, G:0.02, T:0.22
Consensus pattern (8 bp):
ACATATAC
Found at i:11215361 original size:27 final size:26
Alignment explanation
Indices: 11215304--11215363 Score: 86
Period size: 25 Copynumber: 2.3 Consensus size: 26
11215294 TAAGCCCCCC
*
11215304 CCAAAAAAAACCTAACCCCAAAAAAA
1 CCAAGAAAAACCTAACCCCAAAAAAA
*
11215330 -AAAGAAAAACCTAACCCCCAAAAAAA
1 CCAAGAAAAACCTAA-CCCCAAAAAAA
11215356 CCAAGAAA
1 CCAAGAAA
11215364 CCCTAGCCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 12 0.41
26 11 0.38
27 6 0.21
ACGTcount: A:0.65, C:0.28, G:0.03, T:0.03
Consensus pattern (26 bp):
CCAAGAAAAACCTAACCCCAAAAAAA
Found at i:11217829 original size:12 final size:12
Alignment explanation
Indices: 11217812--11217842 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
11217802 ATTCATTTGA
11217812 CATTCATGCATT
1 CATTCATGCATT
11217824 CATTCATGCATT
1 CATTCATGCATT
11217836 CATTCAT
1 CATTCAT
11217843 ATATTGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:11226383 original size:139 final size:138
Alignment explanation
Indices: 11226111--11226362 Score: 359
Period size: 139 Copynumber: 1.8 Consensus size: 138
11226101 GTTCTATTTC
* * * * *
11226111 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGGGAGTTGAGCCTCAGGACACGCTGAGGAATTGTCAA-TTT
* *
11226176 TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCGCTGAGGTA
65 TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACACGCTGAGGTA
11226241 TTTTTTAAA
130 TTTTTTAAA
11226250 AAAAATCAACTCATATTGCGAGAGGGGAGTTGAGCCTCAGGACACGCTGAGGGAATT-TCAA-TT
1 AAAAATCAACTCATATTGCGAGAGGGGAGTTGAGCCTCAGGACACGCTGA-GGAATTGTCAATTT
* *
11226313 TC-TGT-TTTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCA
65 TCGTATGTTTC--AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCA
11226363 GGTCACACGT
Statistics
Matches: 102, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
135 4 0.04
136 2 0.02
137 41 0.40
139 50 0.49
140 5 0.05
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (138 bp):
AAAAATCAACTCATATTGCGAGAGGGGAGTTGAGCCTCAGGACACGCTGAGGAATTGTCAATTTT
CGTATGTTTCAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACACGCTGAGGTAT
TTTTTAAA
Found at i:11226523 original size:75 final size:77
Alignment explanation
Indices: 11226395--11227110 Score: 289
Period size: 75 Copynumber: 8.8 Consensus size: 77
11226385 AATTTTCATT
*
11226395 TTTCAAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
1 TTTC-AATTTCTG-CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGC
*
11226459 ACACGCTGAGGTAA
64 ACACGCCGAGGTAA
* *
11226473 TTTCAATTTCTG-TTGTCAAAAAAAAAT-AACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTC
1 TTTCAATTTCTGCTT-TCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-C
*
11226536 ACACGCCGAGGTAT
64 ACACGCCGAGGTAA
* * * **
11226550 TTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTAAG
1 TTTCAATTTCTG-CTTTCAA------------AA--AAAAATCAACTCATATTGCGAGAGGCGAG
* * * * *
11226615 TTAAGCCT-TGGCTCACGCGCTGAGCTAT
51 TTGAGCCTCAGGCACACGC-C-GAGGTAA
* *
11226643 TTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GATC
1 TTTCAATTTCTG-CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GC
*
11226705 ACACGCCGAGGTAT
64 ACACGCCGAGGTAA
* * * * *
11226719 TTTCAATTTCCGTTTTTCAATTTCTGCCTTTAAAAAAAAATCGACTCATATTACGAGAGGTGAGT
1 TTTCAATTT-C----TGC---TT-T--C--AAAAAAA-AATCAACTCATATTGCGAGAGGCGAGT
* * * *
11226784 TGAGCCT-TGGCTCACGCGCTGAGCTAT
52 TGAGCCTCAGGCACACGC-C-GAGGTAA
* * *
11226811 TTTCAATTTCTGTCTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
1 TTTCAATTTCTG-CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GC
* * *
11226873 ACACACTGAGGTATTTTTT
64 ACACGCCGAGGTA-----A
* ** * * *
11226892 TTTCAATTTATATTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTC
1 TTTCAATTTCT-GCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCC-TCAGGC
*** * *
11226953 ACATATCGAGGCAT
64 ACACGCCGAGGTAA
** *
11226967 TTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTCAATTTCTGC-TTTCAA---AA-----AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGC
* ** *
11227032 CTCAAG-ACACGTTGAGGTAT
57 CTCAGGCACACGCCGAGGTAA
** * *
11227052 TTTCAATTTCTGTCTTTC--AAAAAAATCAGTTCATATTGCGAGAGGTGAGTTGAACCTCA
1 TTTCAATTTCTG-CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCA
11227111 AGACGCTGCG
Statistics
Matches: 506, Mismatches: 65, Indels: 137
0.71 0.09 0.19
Matches are distributed among these distances:
75 82 0.16
76 63 0.12
77 73 0.14
78 19 0.04
79 4 0.01
80 49 0.10
81 19 0.04
82 1 0.00
83 2 0.00
84 2 0.00
85 26 0.05
86 4 0.01
87 37 0.07
88 1 0.00
90 13 0.03
91 41 0.08
92 24 0.05
93 46 0.09
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (77 bp):
TTTCAATTTCTGCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
ACGCCGAGGTAA
Found at i:11226574 original size:168 final size:168
Alignment explanation
Indices: 11226247--11226889 Score: 888
Period size: 168 Copynumber: 3.8 Consensus size: 168
11226237 GGTATTTTTT
* **
11226247 AAAAAAAATCAACTCATATTGCGAGAGGGGAGTTGAGCCTCAGG-ACACGCTGAGGGAATTTCAA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCACACGCTGAGCTAATTTCAA
* * *
11226311 TTTCTGT-TTTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCG
65 TTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCG
* *
11226375 AGGTATTTTCAATTTTCATTTTTCAAATTTCTGCCTTTCA
130 AGGTATTTTCAATTTCCGTTTTTC-AATTTCTGCCTTTCA
*
11226415 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCACACGCTGAGCTAATTTCAA
* * * *
11226479 TTTCTGT-TGTCAAAAAAAAAT-AACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGC
65 TTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGC
11226542 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCA
128 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCA
* * * * * *
11226583 AAAAAAAATCGACTCATATTGCGAGAGGTAAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--CACACGCTGAGCTAATTTCA
*
11226648 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GATCACACGCC
64 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCC
11226712 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTT-A
129 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCA
* * * * *
11226751 AAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--CACACGCTGAGCTAATTTCA
* * * *
11226816 ATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACT
64 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCC
11226880 GAGGTATTTT
129 GAGGTATTTT
11226890 TTTTTCAATT
Statistics
Matches: 442, Mismatches: 25, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
167 40 0.09
168 219 0.50
169 120 0.27
170 60 0.14
171 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (168 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCACACGCTGAGCTAATTTCAAT
TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCGA
GGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCA
Found at i:11226632 original size:91 final size:93
Alignment explanation
Indices: 11226473--11226830 Score: 237
Period size: 91 Copynumber: 4.1 Consensus size: 93
11226463 GCTGAGGTAA
* * * *
11226473 TTTCAATTTCTGTTGTCAAAAAAAAATAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGTTGTCAAAAAAAAATAACTCATATTGCGAGAGGCAAGTTAAGCCTCAGGTCAC
* *
11226538 ACGC-C-GAGGTATTTTCAATTTCCGTT
66 ACGCGCTGAGCTATTTTCAATTTCCGTC
* * *
11226564 TTTCAATTTCTGCCTT-TCAAAAAAAAATCGACTCATATTGCGAGAGGTAAGTTAAGCCT-TGG-
1 TTTCAATTTCTG--TTGTCAAAAAAAAAT-AACTCATATTGCGAGAGGCAAGTTAAGCCTCAGGT
*
11226626 CTCACGCGCTGAGCTATTTTCAA--------
63 CACACGCGCTGAGCTATTTTCAATTTCCGTC
* ** ** * *
11226649 TTTC--TGTC--TT-TC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GATCAC
1 TTTCAATTTCTGTTGTCAAAAAAAAATAACTCATATTGCGAGAGGCAAGTTAAGCCTCAGGTCAC
* *
11226707 ACGC-C-GAGGTATTTTCAATTTCCGTT
66 ACGCGCTGAGCTATTTTCAATTTCCGTC
* * ** * *
11226733 TTTCAATTTCTGCCTT-T-AAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCT-TGG-
1 TTTCAATTTCTG--TTGTCAAAAAAAAAT-AACTCATATTGCGAGAGGCAAGTTAAGCCTCAGGT
* *
11226794 CTCACGCGCTGAGCTATTTTCAATTTCTGTC
63 CACACGCGCTGAGCTATTTTCAATTTCCGTC
11226825 TTTCAA
1 TTTCAA
11226831 AAAATCAACT
Statistics
Matches: 213, Mismatches: 28, Indels: 51
0.73 0.10 0.17
Matches are distributed among these distances:
76 12 0.06
77 29 0.14
78 13 0.06
79 4 0.02
83 3 0.01
84 4 0.02
85 4 0.02
86 3 0.01
90 16 0.08
91 48 0.23
92 39 0.18
93 38 0.18
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (93 bp):
TTTCAATTTCTGTTGTCAAAAAAAAATAACTCATATTGCGAGAGGCAAGTTAAGCCTCAGGTCAC
ACGCGCTGAGCTATTTTCAATTTCCGTC
Found at i:11226644 original size:93 final size:91
Alignment explanation
Indices: 11226473--11226662 Score: 222
Period size: 93 Copynumber: 2.1 Consensus size: 91
11226463 GCTGAGGTAA
* * * *
11226473 TTTCAATTTCTGTTGTCAAAAAAAAATAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGTTGTCAAAAAAAAATAACTCATATTGCGAGAGGCAAGTTAAGCCTCAGGTCAC
* *
11226538 ACGCCGAGGTATTTTCAATTTCCGTT
66 ACGCCGAGCTATTTTCAATTTCCGTC
* * *
11226564 TTTCAATTTCTGCCTT-TCAAAAAAAAATCGACTCATATTGCGAGAGGTAAGTTAAGCCT-TGGC
1 TTTCAATTTCTG--TTGTCAAAAAAAAAT-AACTCATATTGCGAGAGGCAAGTTAAGCCTCAGG-
* * *
11226627 TCACGCGCTGAGCTATTTTCAATTTCTGTC
62 TCACACGCCGAGCTATTTTCAATTTCCGTC
11226657 TTTCAA
1 TTTCAA
11226663 AAAAATCAAC
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
91 12 0.14
92 14 0.17
93 57 0.69
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (91 bp):
TTTCAATTTCTGTTGTCAAAAAAAAATAACTCATATTGCGAGAGGCAAGTTAAGCCTCAGGTCAC
ACGCCGAGCTATTTTCAATTTCCGTC
Found at i:11226737 original size:76 final size:77
Alignment explanation
Indices: 11226563--11226738 Score: 219
Period size: 77 Copynumber: 2.3 Consensus size: 77
11226553 CAATTTCCGT
* * * * *
11226563 TTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTAAGTTAAGCCTTGGCT
1 TTTTCAATTTCCGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTAAGTTAAGCCTTCGAT
* *
11226628 CACGCGCTGAGCTA
64 CACACGCCGAGCTA
* * *
11226642 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGATCA
1 TTTTCAATTTCCGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTAAGCCTTCGATCA
*
11226706 CACGCCGAGGTA
66 CACGCCGAGCTA
*
11226718 TTTTCAATTTCCGTTTTTCAA
1 TTTTCAATTTCCGTCTTTCAA
11226739 TTTCTGCCTT
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
76 33 0.38
77 35 0.41
79 18 0.21
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCCGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTAAGCCTTCGATCA
CACGCCGAGCTA
Found at i:11226830 original size:92 final size:90
Alignment explanation
Indices: 11226643--11226830 Score: 259
Period size: 91 Copynumber: 2.1 Consensus size: 90
11226633 GCTGAGCTAT
* * *
11226643 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGATCACA
1 TTTCAATTTCTGCCTTTAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGATCACA
* *
11226708 CGCCGAGGTATTTTCAATTTCCGTT
66 CGCCGAGCTATTTTCAATTTCCGTC
* * *
11226733 TTTCAATTTCTGCCTTTAAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTCAATTTCTGCCTTT-AAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC-TCGATCA
* * *
11226798 CGCGCTGAGCTATTTTCAATTTCTGTC
64 CACGCCGAGCTATTTTCAATTTCCGTC
11226825 TTTCAA
1 TTTCAA
11226831 AAAATCAACT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
90 16 0.19
91 36 0.42
92 33 0.39
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (90 bp):
TTTCAATTTCTGCCTTTAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGATCACA
CGCCGAGCTATTTTCAATTTCCGTC
Found at i:11226937 original size:80 final size:83
Alignment explanation
Indices: 11226810--11227031 Score: 242
Period size: 80 Copynumber: 2.7 Consensus size: 83
11226800 CGCTGAGCTA
* *
11226810 TTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
1 TTTTCAATTTATATCTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG-TCAC
*
11226875 ACA-CTGAGGTA-TTT-T-T-
64 ACATC-GAGGCATTTTATCTC
* *
11226891 TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACA
1 TTTTCAATTTATATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGTCACA
*
11226956 TATCGAGGCATTTTCAAAATCTGC
65 CATCGAGGCATTTT----ATCT-C
* *
11226980 TTTTCAAGTTA-A-GTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTATATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
11227032 CTCAAGACAC
Statistics
Matches: 122, Mismatches: 8, Indels: 17
0.83 0.05 0.12
Matches are distributed among these distances:
80 45 0.37
81 25 0.20
86 2 0.02
87 39 0.32
88 1 0.01
89 10 0.08
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (83 bp):
TTTTCAATTTATATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGTCACAC
ATCGAGGCATTTTATCTC
Found at i:11227144 original size:73 final size:74
Alignment explanation
Indices: 11226997--11227137 Score: 203
Period size: 75 Copynumber: 1.9 Consensus size: 74
11226987 GTTAAGTTTC
* *
11226997 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA-ACGCTGAGGTATTTTCAATTTC
11227062 TGTCTTTCAA
65 TGTCTTTCAA
** * * *
11227072 AAAAATCAGTTCATATTGCGAGAGGTGAGTTGAACCTCAAG-ACGCTGCGGTGTTTTCCATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAACGCTGAGGTATTTTCAATTTCT
11227136 GT
66 GT
11227138 TCTTCAATTT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
73 21 0.36
75 38 0.64
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAACGCTGAGGTATTTTCAATTTCT
GTCTTTCAA
Found at i:11227252 original size:15 final size:14
Alignment explanation
Indices: 11227216--11227248 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
11227206 CGCTGAGGTA
11227216 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
11227230 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
11227244 TTTTC
1 TTTTC
11227249 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:11227256 original size:92 final size:91
Alignment explanation
Indices: 11227051--11227593 Score: 426
Period size: 88 Copynumber: 6.0 Consensus size: 91
11227041 CGTTGAGGTA
* * ** * * *
11227051 TTTTCAATTTCTGTCTTTCAAAAAAATCAGTTCATATTGCGAGAGGTGAGTTGAACC-T--C-AA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCA
* * * * *
11227112 GACGCTGCGGTGTTTTCCATTTCTGT
66 CACGCTGAGGTATTTTCAAATTCTGT
* * * * * * *
11227138 TCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTC
1 TTTTCAATTTATGTTTTTC-AAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTC
11227203 ACACGCTGAGGTATTTTCAAATTCTGT
65 ACACGCTGAGGTATTTTCAAATTCTGT
* *
11227230 TTTTCAAATTT-TGTTTTTCCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTCAGCCTCAGG
1 TTTTC-AATTTATGTTTTT-C-AAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT-TGG
* *
11227294 ---ACACGCTGAGGTATTTTC-AATTTTTT
62 CTCACACGCTGAGGTATTTTCAAATTCTGT
* * * *
11227320 TTTTCAATTTATGTTTGTCAAAAAAATCAAATCATACTACGAGAGGTGAGTTGAGCCTCAGGC-C
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT-TGGCTC
* *
11227384 ACACGCCGAGGTATTTTCAATTGATGT-TTT
65 ACACGCTGAGGTATTTTCAA---AT-TCTGT
* * * * *
11227414 TTTTTAATTTATGCTTTGC--AAAAATCAACTCATATTACGAGAGGTGGGTTGAG-CTTCGGGTC
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTT-GGCTC
**
11227476 ACA-TATCGAGGTATTTTCATAA-TCTGT
65 ACACGCT-GAGGTATTTTCA-AATTCTGT
* * *
11227503 TTTACAAATTT-TG-TTTT---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTC
1 TTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTC
** * *
11227563 ACGTGCTGAGCTATTTTCAATTTCTGT
65 ACACGCTGAGGTATTTTCAAATTCTGT
11227590 TTTT
1 TTTT
11227594 AATGTCTAGT
Statistics
Matches: 379, Mismatches: 52, Indels: 50
0.79 0.11 0.10
Matches are distributed among these distances:
86 1 0.00
87 73 0.19
88 83 0.22
89 14 0.04
90 40 0.11
91 24 0.06
92 79 0.21
93 43 0.11
94 21 0.06
95 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (91 bp):
TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCA
CACGCTGAGGTATTTTCAAATTCTGT
Found at i:11227374 original size:181 final size:178
Alignment explanation
Indices: 11227051--11227593 Score: 498
Period size: 181 Copynumber: 3.0 Consensus size: 178
11227041 CGTTGAGGTA
* ** * *
11227051 TTTTC-AATTTCTGTCTTT-CAAAAAAATCAGTTCATATTGCGAGAGGTGAGTTGAACCTCA--A
1 TTTTCAAATTTATG-CTTTCCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGA
* * * * * *
11227112 GACGCTGCGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATT
65 CACGCTGAGGTATTTTCAATTT-TGTTTTTCAATTT-TGT-TTTC-AAAAAAATCAACTCATATT
* *
11227177 GCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGT
126 GCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAATTCTGT
* *
11227230 TTTTCAAATTT-TGTTTTTCCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTCAGCCTCAGG
1 TTTTCAAATTTATG-CTTTCC-AAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG
* * * *
11227294 ACACGCTGAGGTATTTTCAATTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAAATCATACTA
64 ACACGCTGAGGTATTTTCAATTTTGTTTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATATTG
* * *
11227359 CGAGAGGTGAGTTGAGCCTCAGGC-CACACGCCGAGGTATTTTC-AATTGATGTTT
127 CGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTCAAATT-CTG--T
** * * * * *
11227413 TTTTTTAATTTATGCTTTGC--AAAAATCAACTCATATTACGAGAGGTGGGTTGAGCTTCGGGTC
1 TTTTCAAATTTATGCTTTCCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGAC
** * * *
11227476 ACATATCGAGGTATTTTCATAATCTGTTTTACAAATTTTGTTTT---AAAAATCAACTCATATTG
66 AC-GCT-GAGGTATTTTCA-ATTTTGTTTTTC-AATTTTGTTTTCAAAAAAATCAACTCATATTG
* ** * *
11227538 CGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGT
127 CGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAATTCTGT
11227590 TTTT
1 TTTT
11227594 AATGTCTAGT
Statistics
Matches: 299, Mismatches: 48, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
177 5 0.02
178 3 0.01
179 61 0.20
180 53 0.18
181 93 0.31
182 31 0.10
183 46 0.15
184 7 0.02
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (178 bp):
TTTTCAAATTTATGCTTTCCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGAC
ACGCTGAGGTATTTTCAATTTTGTTTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAATTCTGT
Found at i:11231885 original size:30 final size:30
Alignment explanation
Indices: 11231836--11231918 Score: 96
Period size: 30 Copynumber: 2.8 Consensus size: 30
11231826 AAGGATAACC
* *
11231836 AGAAAACCAAGATAGAGAAA-CCCAGAATAA
1 AGAAATCCAAGATAAAGAAATCCCAG-ATAA
* *
11231866 AGAAATCCAACATAAAGAAATCCCAGATAG
1 AGAAATCCAAGATAAAGAAATCCCAGATAA
* *
11231896 ATAAGTCCAAGATAAAGAAATCC
1 AGAAATCCAAGATAAAGAAATCC
11231919 AAATTACAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 40 0.89
31 5 0.11
ACGTcount: A:0.55, C:0.18, G:0.14, T:0.12
Consensus pattern (30 bp):
AGAAATCCAAGATAAAGAAATCCCAGATAA
Found at i:11231919 original size:15 final size:15
Alignment explanation
Indices: 11231836--11231920 Score: 82
Period size: 15 Copynumber: 5.7 Consensus size: 15
11231826 AAGGATAACC
* *
11231836 AGAAAACCAAGATAG
1 AGAAATCCAAGATAA
*
11231851 AGAAA-CCCAGAATAA
1 AGAAATCCAAG-ATAA
*
11231866 AGAAATCCAACATAA
1 AGAAATCCAAGATAA
* *
11231881 AGAAATCCCAGATAG
1 AGAAATCCAAGATAA
* *
11231896 ATAAGTCCAAGATAA
1 AGAAATCCAAGATAA
11231911 AGAAATCCAA
1 AGAAATCCAA
11231921 ATTACAATAT
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
14 4 0.07
15 48 0.87
16 3 0.05
ACGTcount: A:0.56, C:0.18, G:0.14, T:0.12
Consensus pattern (15 bp):
AGAAATCCAAGATAA
Found at i:11235264 original size:9 final size:9
Alignment explanation
Indices: 11235250--11235288 Score: 78
Period size: 9 Copynumber: 4.3 Consensus size: 9
11235240 TGGACAATCA
11235250 TTTTTAATT
1 TTTTTAATT
11235259 TTTTTAATT
1 TTTTTAATT
11235268 TTTTTAATT
1 TTTTTAATT
11235277 TTTTTAATT
1 TTTTTAATT
11235286 TTT
1 TTT
11235289 ACCTACTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTAATT
Found at i:11236458 original size:72 final size:71
Alignment explanation
Indices: 11236247--11236461 Score: 220
Period size: 72 Copynumber: 3.0 Consensus size: 71
11236237 TAATTATGTG
* * * *
11236247 TTTTTAAAAAGGTTAATTAAGTTCAATTTATTAAGTTTTGATATTAAGCGAAACTGTTTATT-TA
1 TTTTTAAAAA-GTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTGAAACCGTTTATTCTA
11236311 GTTATACA
65 -TTATACA
* * ** ** * * * *
11236319 -TTTTCATAAGCTTAATTTAGTTTGATTTATTGAAATTTGATATTAAGTAAAAACGTTTGTTCAA
1 TTTTTAAAAAG-TTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTGAAACCGTTTATTCTA
11236383 TTATGA-A
65 TTAT-ACA
* *
11236390 TTTTTAAAAATGTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTGGAACCATTTATTCTA
1 TTTTTAAAAA-GTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTGAAACCGTTTATTCTA
11236455 TTATACA
65 TTATACA
11236462 AAGTAAAACC
Statistics
Matches: 111, Mismatches: 26, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
70 1 0.01
71 52 0.47
72 57 0.51
73 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (71 bp):
TTTTTAAAAAGTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTGAAACCGTTTATTCTAT
TATACA
Found at i:11236483 original size:99 final size:99
Alignment explanation
Indices: 11236363--11236557 Score: 282
Period size: 99 Copynumber: 2.0 Consensus size: 99
11236353 ATTTGATATT
* * * * *
11236363 AAGTAAAAACGTTTGTTCAATTATGAATTTTTAAAAATGTTAATTTAGTTCAATTTATTGAGTTT
1 AAGTAAAAACGCTTGTTCAATTATGAATTTTTAAAAAAGATAATTTAGTCCAATTTATTGAATTT
* * *
11236428 TGATATTAAGTGGAACCATTTATTCTATTATACA
66 TGATATTAACTAGAACCATTTATTCAATTATACA
* **
11236462 AAGTAAAACCGCTTGTTCAATTATGCGTTTTTAAAAAAGATAATTTAGTCCAATTTATTGAATTT
1 AAGTAAAAACGCTTGTTCAATTATGAATTTTTAAAAAAGATAATTTAGTCCAATTTATTGAATTT
*
11236527 TGATATTAACTAGAACCGTTTATTCAATTAT
66 TGATATTAACTAGAACCATTTATTCAATTAT
11236558 GTGTTTTTAA
Statistics
Matches: 84, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 84 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (99 bp):
AAGTAAAAACGCTTGTTCAATTATGAATTTTTAAAAAAGATAATTTAGTCCAATTTATTGAATTT
TGATATTAACTAGAACCATTTATTCAATTATACA
Found at i:11236666 original size:72 final size:72
Alignment explanation
Indices: 11236462--11236695 Score: 220
Period size: 72 Copynumber: 3.2 Consensus size: 72
11236452 CTATTATACA
* * ** * * * *
11236462 AAGTAAAACCGCTTGTTCAATTATGCGTTTTTAAAAAAGA-TAATTTAGTCCAATTTATTGAATT
1 AAGTAAAACCGTTTATTCAATTATATGTTTTT-AAAAAGACTAAATTAATTCAATTTATTGAGTT
11236526 TTGATATT
65 TTGATATT
* * * * ** * *
11236534 AACTAGAACCGTTTATTCAATTATGTGTTTTTAAAAAGGCTACTTTAGTTCAATTCATTGAGTTT
1 AAGTAAAACCGTTTATTCAATTATATGTTTTTAAAAAGACTAAATTAATTCAATTTATTGAGTTT
11236599 TGATATT
66 TGATATT
* * * * **
11236606 AAGTAAAACGGTTTATTCAAGTTATATG-TTTTGAGAAGATTAAATTAATTTGATTTATTGAGTT
1 AAGTAAAACCGTTTATTCAA-TTATATGTTTTTAAAAAGACTAAATTAATTCAATTTATTGAGTT
11236670 TTGATATT
65 TTGATATT
* *
11236678 AAGTAAAATCATTTATTC
1 AAGTAAAACCGTTTATTC
11236696 GGTAAAATGT
Statistics
Matches: 133, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
71 6 0.05
72 121 0.91
73 6 0.05
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.44
Consensus pattern (72 bp):
AAGTAAAACCGTTTATTCAATTATATGTTTTTAAAAAGACTAAATTAATTCAATTTATTGAGTTT
TGATATT
Found at i:11245751 original size:22 final size:22
Alignment explanation
Indices: 11245723--11245765 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
11245713 CATAACATTA
11245723 ATATGTTTATATATCGATTCAG
1 ATATGTTTATATATCGATTCAG
11245745 ATATGTTTATATATCGATTCA
1 ATATGTTTATATATCGATTCA
11245766 TTAACATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.47
Consensus pattern (22 bp):
ATATGTTTATATATCGATTCAG
Found at i:11247414 original size:5 final size:6
Alignment explanation
Indices: 11247399--11247432 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
11247389 AAATGAATTA
*
11247399 AAAAAT AAAAAT AAAAAT AAATAAT ACAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAA-AAT AAAAAT AAA
11247433 GGTGTTTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:11248119 original size:9 final size:9
Alignment explanation
Indices: 11248107--11248267 Score: 57
Period size: 9 Copynumber: 17.8 Consensus size: 9
11248097 AAAATTAGAA
11248107 AAAAAATAT
1 AAAAAATAT
11248116 -AAAAATCAT
1 AAAAAAT-AT
*
11248125 -AACAATA-
1 AAAAAATAT
* *
11248132 AAAATATTT
1 AAAAAATAT
11248141 AAAAAATCAT
1 AAAAAAT-AT
** *
11248151 -AAATTTTT
1 AAAAAATAT
*
11248159 AAAAAAATAG
1 AA-AAAATAT
11248169 AAAAAATAT
1 AAAAAATAT
11248178 AAAAAAT-T
1 AAAAAATAT
11248186 ATAAAAAT-T
1 A-AAAAATAT
**
11248195 ATTAAATAT
1 AAAAAATAT
*
11248204 TAAAAATAT
1 AAAAAATAT
* *
11248213 GAAAATTGAT
1 AAAAAAT-AT
* *
11248223 -ATAAATTT
1 AAAAAATAT
11248231 AAAAAATTAT
1 AAAAAA-TAT
11248241 AAAAAAATAT
1 -AAAAAATAT
* *
11248251 ACAAATTATT
1 AAAAAATA-T
11248261 AAAAAAT
1 AAAAAAT
11248268 TTAATAATTT
Statistics
Matches: 109, Mismatches: 30, Indels: 25
0.66 0.18 0.15
Matches are distributed among these distances:
8 19 0.17
9 65 0.60
10 19 0.17
11 6 0.06
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (9 bp):
AAAAAATAT
Found at i:11248188 original size:10 final size:10
Alignment explanation
Indices: 11248129--11248419 Score: 78
Period size: 10 Copynumber: 29.7 Consensus size: 10
11248119 AATCATAACA
11248129 ATAAAAATATT
1 ATAAAAA-ATT
*
11248140 -TAAAAAATC
1 ATAAAAAATT
*
11248149 AT--AAATTT
1 ATAAAAAATT
* *
11248157 TTAAAAAAAT
1 ATAAAAAATT
*
11248167 AGAAAAAA-T
1 ATAAAAAATT
11248176 ATAAAAAATT
1 ATAAAAAATT
11248186 AT-AAAAATT
1 ATAAAAAATT
*
11248195 AT--TAAA-T
1 ATAAAAAATT
*
11248202 ATTAAAAA-T
1 ATAAAAAATT
*
11248211 AT-GAAAATT
1 ATAAAAAATT
*
11248220 GAT-ATAAATT
1 -ATAAAAAATT
11248230 -TAAAAAATT
1 ATAAAAAATT
*
11248239 ATAAAAAAAT
1 ATAAAAAATT
*
11248249 AT-ACAAATT
1 ATAAAAAATT
11248258 ATTAAAAAATT
1 A-TAAAAAATT
* *
11248269 -TAATAATTT
1 ATAAAAAATT
*
11248278 ATAAAACAA-A
1 ATAAAA-AATT
11248288 ATAATAAAATT
1 ATAA-AAAATT
11248299 AATAAAACATATT
1 -ATAAAA-A-ATT
**
11248312 -TAAAATTTT
1 ATAAAAAATT
***
11248321 ATAAAAGCGT
1 ATAAAAAATT
* *
11248331 ATTAAAATTCT
1 ATAAAAAAT-T
*
11248342 ATAAAAAATC
1 ATAAAAAATT
* *
11248352 ATACACAATT
1 ATAAAAAATT
*
11248362 ATAAAAAA-A
1 ATAAAAAATT
*
11248371 ATATTAAAATT
1 ATA-AAAAATT
* *
11248382 AATATAAACTT
1 -ATAAAAAATT
*
11248393 AT-AAAAATC
1 ATAAAAAATT
*
11248402 ATAAAAAAATC
1 AT-AAAAAATT
11248413 ATAAAAA
1 ATAAAAA
11248420 CTTGAACTGG
Statistics
Matches: 205, Mismatches: 49, Indels: 53
0.67 0.16 0.17
Matches are distributed among these distances:
7 3 0.01
8 13 0.06
9 56 0.27
10 83 0.40
11 39 0.19
12 8 0.04
13 3 0.01
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:11248209 original size:63 final size:65
Alignment explanation
Indices: 11248083--11248263 Score: 167
Period size: 63 Copynumber: 2.8 Consensus size: 65
11248073 TATTTTTTTC
* * * * * *
11248083 TATAAAAATATTAAAAAATTAGAAAAAAAATATAAAAATCATAACAA-TA-AAAATATTTAAAAA
1 TATAAAATTGTTAAAAAATTAGAAAAAATATA-AAAAATTATAAAAATTATTAAATATTTAAAAA
11248146 A
65 A
* *
11248147 TCAT-AAATTTTTAAAAAAATAGAAAAAATATAAAAAATTATAAAAATTATTAAATA-TT-AAAA
1 T-ATAAAATTGTTAAAAAATTAGAAAAAATATAAAAAATTATAAAAATTATTAAATATTTAAAAA
11248209 A
65 A
* * * * * *
11248210 TATGAAAATTGATATAAATTTA-AAAAATTATAAAAAAATATACAAATTATTAAA
1 TAT-AAAATTGTTAAAAAATTAGAAAAAATATAAAAAATTATAAAAATTATTAAA
11248264 AAATTTAATA
Statistics
Matches: 97, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 2 0.02
63 47 0.48
64 41 0.42
65 7 0.07
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (65 bp):
TATAAAATTGTTAAAAAATTAGAAAAAATATAAAAAATTATAAAAATTATTAAATATTTAAAAAA
Found at i:11248250 original size:26 final size:26
Alignment explanation
Indices: 11248172--11248251 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 26
11248162 AAAATAGAAA
* *
11248172 AAATATAAAAAATTAT-AAAAATTATT
1 AAATTTAAAAAATTATAAAAAAATA-T
**
11248198 AAATATT-AAAAA-TATGAAAATTGATAT
1 AAAT-TTAAAAAATTAT-AAAA-AAATAT
11248225 AAATTTAAAAAATTATAAAAAAATAT
1 AAATTTAAAAAATTATAAAAAAATAT
11248251 A
1 A
11248252 CAAATTATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
25 3 0.07
26 16 0.38
27 18 0.43
28 5 0.12
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (26 bp):
AAATTTAAAAAATTATAAAAAAATAT
Found at i:11248257 original size:38 final size:39
Alignment explanation
Indices: 11248205--11248411 Score: 109
Period size: 41 Copynumber: 5.2 Consensus size: 39
11248195 ATTAAATATT
*
11248205 AAAAATATGAAAATTGA-T-ATAAATTTAAAAAATTATAA
1 AAAAATATGAAAATT-ATTAAAAAATTTAAAAAATTATAA
* *
11248243 AAAAATAT-ACAAATTATTAAAAAATTTAATAATTTATAAA
1 AAAAATATGA-AAATTATTAAAAAATTTAAAAAATTAT-AA
* **
11248283 ACAAAATAAT-AAAATTAATAAAACATATTTAAAATTTTATAA
1 A-AAAAT-ATGAAAATTATTAAAA-A-ATTTAAAAAATTATAA
*** * * * * *
11248325 AAGCGTATTAAAATTCTATAAAAAATCATACACAATTATAAA
1 AAAAATATGAAAATTAT-TAAAAAAT-TTAAAAAATTAT-AA
* * * * *
11248367 AAAAATATTAAAATTAAT-ATAAACTTATAAAAATCATAA
1 AAAAATATGAAAATTATTAAAAAATTTA-AAAAATTATAA
11248406 AAAAAT
1 AAAAAT
11248412 CATAAAAACT
Statistics
Matches: 129, Mismatches: 27, Indels: 25
0.71 0.15 0.14
Matches are distributed among these distances:
37 2 0.02
38 14 0.11
39 25 0.19
40 17 0.13
41 33 0.26
42 26 0.20
43 12 0.09
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (39 bp):
AAAAATATGAAAATTATTAAAAAATTTAAAAAATTATAA
Found at i:11248326 original size:21 final size:20
Alignment explanation
Indices: 11248266--11248347 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 20
11248256 TTATTAAAAA
*
11248266 ATTTAATAATTTATAAAACAAA
1 ATTTAA-AATTTATAAAAC-AT
* *
11248288 ATAATAAAATTAATAAAACAT
1 AT-TTAAAATTTATAAAACAT
*
11248309 ATTTAAAATTTTATAAAAGCGT
1 ATTTAAAA-TTTATAAAA-CAT
11248331 A-TTAAAATTCTATAAAA
1 ATTTAAAATT-TATAAAA
11248348 AATCATACAC
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
20 7 0.14
21 24 0.48
22 16 0.32
23 3 0.06
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.35
Consensus pattern (20 bp):
ATTTAAAATTTATAAAACAT
Found at i:11248411 original size:11 final size:11
Alignment explanation
Indices: 11248395--11248419 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11248385 ATAAACTTAT
11248395 AAAAATCATAA
1 AAAAATCATAA
11248406 AAAAATCATAA
1 AAAAATCATAA
11248417 AAA
1 AAA
11248420 CTTGAACTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATCATAA
Found at i:11248963 original size:8 final size:8
Alignment explanation
Indices: 11248906--11248963 Score: 55
Period size: 8 Copynumber: 6.9 Consensus size: 8
11248896 TTTATGTAAA
*
11248906 TTTTAATA
1 TTTTAATT
11248914 TTTT-ATT
1 TTTTAATT
11248921 TTTTATATT
1 TTTTA-ATT
*
11248930 TTTAAATT
1 TTTTAATT
11248938 TTTTAAATT
1 TTTT-AATT
11248947 TTTAATAATT
1 TTT--TAATT
11248957 TTTTAAT
1 TTTTAAT
11248964 CATTTTTATG
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
7 6 0.14
8 14 0.33
9 14 0.33
10 7 0.17
11 1 0.02
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (8 bp):
TTTTAATT
Found at i:11260242 original size:7 final size:7
Alignment explanation
Indices: 11260230--11260268 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
11260220 TTATCATGAC
11260230 ACAAGGT
1 ACAAGGT
11260237 ACAAGGT
1 ACAAGGT
11260244 ACAAGGT
1 ACAAGGT
11260251 ACAAGGT
1 ACAAGGT
11260258 ACAAGGT
1 ACAAGGT
11260265 ACAA
1 ACAA
11260269 TTAGTTGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.46, C:0.15, G:0.26, T:0.13
Consensus pattern (7 bp):
ACAAGGT
Found at i:11262762 original size:21 final size:22
Alignment explanation
Indices: 11262738--11262778 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
11262728 TCTGTAAGTA
*
11262738 TTCATGTTCAAATA-TATTTGT
1 TTCATGTTAAAATACTATTTGT
*
11262759 TTCATTTTAAAATACTATTT
1 TTCATGTTAAAATACTATTT
11262779 TCTTTATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.54
Consensus pattern (22 bp):
TTCATGTTAAAATACTATTTGT
Found at i:11266414 original size:21 final size:21
Alignment explanation
Indices: 11266389--11266429 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
11266379 GACGAGATTA
11266389 AAAAACAAAAAAAATGAAATG
1 AAAAACAAAAAAAATGAAATG
* **
11266410 AAAAATAAAAATGATGAAAT
1 AAAAACAAAAAAAATGAAAT
11266430 TGGTAATGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.73, C:0.02, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAAACAAAAAAAATGAAATG
Found at i:11267303 original size:5 final size:5
Alignment explanation
Indices: 11267288--11267335 Score: 69
Period size: 5 Copynumber: 9.4 Consensus size: 5
11267278 TAAACCTTGC
* *
11267288 CTTTAA CTTTA TTTTA CTTTA CTTTA CTTAA CTTTA CTTTA CTTTA CT
1 CTTT-A CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CT
11267336 ATAATTTAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
5 34 0.89
6 4 0.11
ACGTcount: A:0.23, C:0.19, G:0.00, T:0.58
Consensus pattern (5 bp):
CTTTA
Found at i:11267343 original size:10 final size:10
Alignment explanation
Indices: 11267293--11267349 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 10
11267283 CTTGCCTTTA
*
11267293 ACTTTATTTT
1 ACTTTAATTT
*
11267303 ACTTTACTTT
1 ACTTTAATTT
11267313 AC-TTAACTTT
1 ACTTTAA-TTT
*
11267323 ACTTTACTTT
1 ACTTTAATTT
*
11267333 ACTATAATTT
1 ACTTTAATTT
*
11267343 AATTTAA
1 ACTTTAA
11267350 GGCTATTTCA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
9 3 0.08
10 32 0.84
11 3 0.08
ACGTcount: A:0.30, C:0.14, G:0.00, T:0.56
Consensus pattern (10 bp):
ACTTTAATTT
Found at i:11267796 original size:15 final size:15
Alignment explanation
Indices: 11267772--11267801 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11267762 CTCCGACTTT
11267772 TTGGTCTTAAGAATG
1 TTGGTCTTAAGAATG
*
11267787 TTGGTTTTAAGAATG
1 TTGGTCTTAAGAATG
11267802 ATTGATTGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (15 bp):
TTGGTCTTAAGAATG
Found at i:11272100 original size:8 final size:8
Alignment explanation
Indices: 11272084--11272135 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
11272074 TATTGAAAAA
*
11272084 TAAACTTT
1 TAAATTTT
11272092 TAAATTTTT
1 TAAA-TTTT
* *
11272101 TTATTTTT
1 TAAATTTT
*
11272109 TAAAGTTT
1 TAAATTTT
*
11272117 TAAAATTT
1 TAAATTTT
11272125 TAAATTTT
1 TAAATTTT
11272133 TAA
1 TAA
11272136 GAATTAAGAC
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
8 30 0.86
9 5 0.14
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (8 bp):
TAAATTTT
Found at i:11272125 original size:16 final size:17
Alignment explanation
Indices: 11272106--11272140 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
11272096 TTTTTTTATT
11272106 TTTTAAAGTTTTAA-AA
1 TTTTAAAGTTTTAAGAA
*
11272122 TTTTAAATTTTTAAGAA
1 TTTTAAAGTTTTAAGAA
11272139 TT
1 TT
11272141 AAGACTAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
TTTTAAAGTTTTAAGAA
Found at i:11272131 original size:25 final size:25
Alignment explanation
Indices: 11272084--11272133 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
11272074 TATTGAAAAA
* **
11272084 TAAACTTTTAAATTTTTTTATTTTT
1 TAAACTTTTAAAATTTTAAATTTTT
*
11272109 TAAAGTTTTAAAATTTTAAATTTTT
1 TAAACTTTTAAAATTTTAAATTTTT
11272134 AAGAATTAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
TAAACTTTTAAAATTTTAAATTTTT
Found at i:11272215 original size:60 final size:60
Alignment explanation
Indices: 11272129--11272245 Score: 150
Period size: 60 Copynumber: 1.9 Consensus size: 60
11272119 AAATTTTAAA
11272129 TTTTTAAGAATTAAGACTAATGTGATAGAA-CGTGTAAAGT-TGAGAGCTAAATTTGTTGAC
1 TTTTTAAGAATTAAGACTAATGTGATAGAATC-TGTAAA-TATGAGAGCTAAATTTGTTGAC
* * **
11272189 TTTTTTAGATTTAAGACTAAAT-TGATAGAATCTGTAAATATTTGAGCTAAATTTGTT
1 TTTTTAAGAATTAAGACT-AATGTGATAGAATCTGTAAATATGAGAGCTAAATTTGTT
11272246 CTTATGCTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
59 1 0.02
60 45 0.90
61 4 0.08
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (60 bp):
TTTTTAAGAATTAAGACTAATGTGATAGAATCTGTAAATATGAGAGCTAAATTTGTTGAC
Found at i:11272833 original size:68 final size:69
Alignment explanation
Indices: 11272724--11272862 Score: 226
Period size: 68 Copynumber: 2.0 Consensus size: 69
11272714 TCTAAAACAC
* * *
11272724 TAATGAAGTTTTCTCCCAATAACGCGTTGCCAATTGTAAAGG-GATGGTCAAGGATTTTAACGCG
1 TAATGAAGTTTTCTCCCAACAACACGTTGCCAATTGTAAAGGAGATGGTCAAGGATTCTAACGCG
11272788 GGCA
66 GGCA
* *
11272792 TAATGAAGTTTTCTCTCAACAACACGTTGCCAATTGTAAAGGAGATGGTCAGGGATTCTAACGCG
1 TAATGAAGTTTTCTCCCAACAACACGTTGCCAATTGTAAAGGAGATGGTCAAGGATTCTAACGCG
11272857 GGCA
66 GGCA
11272861 TA
1 TA
11272863 GGTTCGATAC
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
68 39 0.60
69 26 0.40
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (69 bp):
TAATGAAGTTTTCTCCCAACAACACGTTGCCAATTGTAAAGGAGATGGTCAAGGATTCTAACGCG
GGCA
Found at i:11273713 original size:6 final size:6
Alignment explanation
Indices: 11273695--11273725 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
11273685 AACTGAAGAG
*
11273695 TCTCTA TCCCTA TCTCTA TCTCTA TCTCTA T
1 TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA T
11273726 AAAAATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.16, C:0.35, G:0.00, T:0.48
Consensus pattern (6 bp):
TCTCTA
Found at i:11278401 original size:30 final size:30
Alignment explanation
Indices: 11278365--11278509 Score: 245
Period size: 30 Copynumber: 4.8 Consensus size: 30
11278355 ACTTTTCTCA
11278365 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
11278395 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
11278425 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
11278455 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
11278485 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCCTTTTCCACCACCA
11278510 CTTGTACCTA
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 109 1.00
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:11278634 original size:28 final size:28
Alignment explanation
Indices: 11278594--11278648 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
11278584 GTATATGAGA
11278594 GAGGAGGGGATTTTTTTGGAGAGTTTTG
1 GAGGAGGGGATTTTTTTGGAGAGTTTTG
11278622 GAGG-GGGAGATTTTTTTGGAGAGTTTT
1 GAGGAGGG-GATTTTTTTGGAGAGTTTT
11278649 TGGGAGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 3 0.12
28 23 0.88
ACGTcount: A:0.18, C:0.00, G:0.42, T:0.40
Consensus pattern (28 bp):
GAGGAGGGGATTTTTTTGGAGAGTTTTG
Found at i:11279126 original size:25 final size:25
Alignment explanation
Indices: 11279098--11279156 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
11279088 ATATTACGTA
* *
11279098 TATATATATTTTATACTATTTTATG
1 TATATATATTTAATACTATATTATG
* * *
11279123 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATG
11279148 TATATATAT
1 TATATATAT
11279157 ATATATTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATG
Found at i:11279207 original size:22 final size:24
Alignment explanation
Indices: 11279179--11279237 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
11279169 ACATGTTATC
11279179 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
11279201 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
11279226 TTATGTACATAT
1 TTATGTATATAT
11279238 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:11279227 original size:25 final size:25
Alignment explanation
Indices: 11279195--11279243 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
11279185 ATATATCTTA
**
11279195 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
11279220 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
11279244 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Done.