Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 41 of 311
Found at i:11555131 original size:28 final size:30
Alignment explanation
Indices: 11555064--11555131 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 30
11555054 TTGAATAAAT
* * *
11555064 TGTATTGTTTATTTTGGATTTGGGTTTGGC
1 TGTACTGTATATTTTGGATTTGAGTTTGGC
*
11555094 TG-ACT-AATATTTTGGATTTGAGTTTGG-
1 TGTACTGTATATTTTGGATTTGAGTTTGGC
11555121 TGTA-TGTATAT
1 TGTACTGTATAT
11555132 ATATTGTTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
27 3 0.10
28 24 0.77
29 2 0.06
30 2 0.06
ACGTcount: A:0.18, C:0.03, G:0.26, T:0.53
Consensus pattern (30 bp):
TGTACTGTATATTTTGGATTTGAGTTTGGC
Found at i:11555941 original size:11 final size:10
Alignment explanation
Indices: 11555911--11555944 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
11555901 TTAAAATCTT
11555911 AAATTAAAAC
1 AAATTAAAAC
*
11555921 ATATTAAAAC
1 AAATTAAAAC
11555931 AAATCTAAAAC
1 AAAT-TAAAAC
11555942 AAA
1 AAA
11555945 AACGTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.21
Consensus pattern (10 bp):
AAATTAAAAC
Found at i:11556030 original size:20 final size:20
Alignment explanation
Indices: 11556007--11556049 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
11555997 ATTATTATTA
11556007 ATTTTAAA-TTATAATTTTGT
1 ATTTTAAATTTA-AATTTTGT
**
11556027 ATTTTTTATTTAAATTTTGT
1 ATTTTAAATTTAAATTTTGT
11556047 ATT
1 ATT
11556050 GATTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (20 bp):
ATTTTAAATTTAAATTTTGT
Found at i:11556632 original size:26 final size:26
Alignment explanation
Indices: 11556531--11556648 Score: 105
Period size: 26 Copynumber: 4.3 Consensus size: 26
11556521 TTAAATTAAT
*
11556531 TTAAATTAAATTATTATATGATGTGA
1 TTAAATTAAATTATTATATAATGTGA
** * *
11556557 TTAATACAAAAGTA-TATA-ATATGATAA
1 TTAA-ATTAAATTATTATATA-ATG-TGA
11556584 TTAAATTAAATTAATTAGTATATAATGTGA
1 TTAAATTAAATT-A-T--TATATAATGTGA
*
11556614 TTAAATTAAATTATTATATAATGTTA
1 TTAAATTAAATTATTATATAATGTGA
11556640 TTAAATTAA
1 TTAAATTAA
11556649 GTTAATAATG
Statistics
Matches: 73, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
26 36 0.49
27 13 0.18
28 1 0.01
29 1 0.01
30 14 0.19
31 7 0.10
32 1 0.01
ACGTcount: A:0.48, C:0.01, G:0.08, T:0.43
Consensus pattern (26 bp):
TTAAATTAAATTATTATATAATGTGA
Found at i:11556688 original size:38 final size:38
Alignment explanation
Indices: 11556637--11556712 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
11556627 TTATATAATG
11556637 TTATTAAATTAAGTTAATAATGGGTCTCAAACTATCCC
1 TTATTAAATTAAGTTAATAATGGGTCTCAAACTATCCC
11556675 TTATTAAATTAAGTTAATAATGGGTCTCAAACTATCCC
1 TTATTAAATTAAGTTAATAATGGGTCTCAAACTATCCC
11556713 ACATCTCAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (38 bp):
TTATTAAATTAAGTTAATAATGGGTCTCAAACTATCCC
Found at i:11556779 original size:12 final size:11
Alignment explanation
Indices: 11556750--11556786 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 11
11556740 CTAACATTTT
11556750 TATATAT-A-A
1 TATATATGATA
11556759 TATATATGATA
1 TATATATGATA
11556770 TATGATATGATA
1 TAT-ATATGATA
11556782 TATAT
1 TATAT
11556787 GGTTATTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 7 0.28
10 1 0.04
11 6 0.24
12 11 0.44
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (11 bp):
TATATATGATA
Found at i:11556889 original size:3 final size:3
Alignment explanation
Indices: 11556876--11556904 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
11556866 ATGTTTAAAT
11556876 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11556905 ATGGCAAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:11560527 original size:28 final size:28
Alignment explanation
Indices: 11560470--11560533 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
11560460 TGGGAAGTAG
* *
11560470 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
* *
11560498 TTGGGCTTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
*
11560526 TTAGGCCT
1 TTGGGCCT
11560534 AAAGGGGCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.20, C:0.16, G:0.36, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACGAGA
Found at i:11560877 original size:27 final size:27
Alignment explanation
Indices: 11560855--11560998 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
11560845 AGAAATTATT
11560855 GAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
11560882 GAAATACCCTCGA-TTGTGAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* *
11560908 GAAATACCCTCAATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
11560935 GAAATACCC-CTGATTTGTAAAATTACC
1 GAAATACCCTC-GATTTGTAAAATTACC
* * *
11560962 AAAATACCCTTG-TAGTGTAAAATTACC
1 GAAATACCCTCGAT-TTGTAAAATTACC
*
11560989 AAAATACCCT
1 GAAATACCCT
11560999 TGTAGTGTAA
Statistics
Matches: 102, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 25 0.25
27 77 0.75
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTACC
Found at i:11560926 original size:53 final size:55
Alignment explanation
Indices: 11560846--11560998 Score: 179
Period size: 53 Copynumber: 2.8 Consensus size: 55
11560836 ATAATAAAGA
* *
11560846 GAAATTATTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-GA-TTGT
1 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCTGATTTGT
*
11560899 GAAATTACTGAAATACCCTCAATTTGTAAAATTATCGAAATACCC-CTGATTTGT
1 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCTGATTTGT
* ** ** * *
11560953 AAAATTACCAAAATACCCT-TGTAGTGTAAAATTACCAAAATACCCT
1 GAAATTACTGAAATACCCTCAAT-TTGTAAAATTACCGAAATACCCT
11560999 TGTAGTGTAA
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
52 1 0.01
53 45 0.53
54 39 0.46
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (55 bp):
GAAATTACTGAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCTGATTTGT
Found at i:11560999 original size:27 final size:27
Alignment explanation
Indices: 11560870--11561038 Score: 148
Period size: 27 Copynumber: 6.3 Consensus size: 27
11560860 ACCCTCGATT
* *
11560870 TGTAAAATTACCGAAATACCCTCG-AT
1 TGTAAAATTACCGAAATACCCTTGTAG
* * ** *
11560896 TGTGAAATTACTGAAATACCC-TCAATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* * *
11560923 TGTAAAATTATCGAAATACCCCTG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
*
11560950 TGTAAAATTACCAAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
11560977 TGTAAAATTACCAAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* *
11561004 TGTAAAATGACCGACATAACCC-TGTAG
1 TGTAAAATTACCGAAAT-ACCCTTGTAG
*
11561031 GGTAAAAT
1 TGTAAAAT
11561039 GACTATTTTT
Statistics
Matches: 122, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
26 20 0.16
27 96 0.79
28 6 0.05
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:11561008 original size:54 final size:52
Alignment explanation
Indices: 11560870--11561038 Score: 167
Period size: 54 Copynumber: 3.2 Consensus size: 52
11560860 ACCCTCGATT
* * * ** *
11560870 TGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCAATT
1 TGTAAAATTACCGAAATACCCTTGATTGTAAAATTACCGAAATACCCTGTA-G
* * *
11560923 TGTAAAATTATCGAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGA-TTGTAAAATTACCGAAATACCC-TGTAG
* * * *
11560977 TGTAAAATTACCAAAATACCCTTGTAGTGTAAAATGACCGACATAACCCTGTAG
1 TGTAAAATTACCGAAATACCCTTG-ATTGTAAAATTACCGAAAT-ACCCTGTAG
*
11561031 GGTAAAAT
1 TGTAAAAT
11561039 GACTATTTTT
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
53 22 0.23
54 66 0.69
55 7 0.07
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (52 bp):
TGTAAAATTACCGAAATACCCTTGATTGTAAAATTACCGAAATACCCTGTAG
Found at i:11563935 original size:28 final size:28
Alignment explanation
Indices: 11563878--11563941 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
11563868 TGGGAAGTAG
*
11563878 TTGGGCCTGATAGGCCATATGAATATGA
1 TTGGGCCTGATAGGCCATATGAAGATGA
* * *
11563906 TTGGGTCTGATGGGCCATGTGAACGA-GA
1 TTGGGCCTGATAGGCCATATGAA-GATGA
11563934 TTGGGCCT
1 TTGGGCCT
11563942 AAAGGGGCCA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 29 0.97
29 1 0.03
ACGTcount: A:0.22, C:0.16, G:0.34, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATAGGCCATATGAAGATGA
Found at i:11564313 original size:27 final size:27
Alignment explanation
Indices: 11564266--11565047 Score: 716
Period size: 27 Copynumber: 29.3 Consensus size: 27
11564256 AGAAATTATT
*
11564266 GAAAT-CCCTCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
11564292 GAAATA-CCTCCGATTTGTAAAATTACC
1 GAAATACCCT-CGATTTGTAAAATTACC
* *
11564319 AAAATACCCTCGATTATG--AAATTACT
1 GAAATACCCTCGATT-TGTAAAATTACC
* *
11564345 GAAATACCTTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
11564372 AAAATACCCTCGATTTATAAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
11564399 AAAATACCCTCGA-TTGTGAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* * * *
11564425 AAAATCCCCTCGATTTGTAAAGTTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
11564452 GAAATACACTCGA-TTGTGAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
*
11564478 GAAATACCCCCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * * * **
11564505 AAAATACCATTGA-TTGT-GAATTATT
1 GAAATACCCTCGATTTGTAAAATTACC
* *
11564530 GAAATACTCTCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * * *
11564557 AAAATACCCTCGA-CTGTGAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* *
11564583 GAAATACCCTC-AATTGTAAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
*
11564609 AAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
11564636 GAAATACCCTCGA-TTGTGAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* * * *
11564662 AAAATACTCTAGATTTGTAAAATTGCC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
11564689 AAAATACCCCCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
*
11564716 GAAATACCC-CTAATTTGTAAAATTACC
1 GAAATACCCTC-GATTTGTAAAATTACC
* *
11564743 AAAATATCCCT-GATTTGTGAAATTACC
1 GAAATA-CCCTCGATTTGTAAAATTACC
* *
11564770 GAAACACCTTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
11564797 GAAGTA-TCTCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * * *
11564823 GAAATACCCCCTATTTGTGAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
*
11564850 GAAACACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
11564877 GAAAAACCCTCTATTTCTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
*
11564904 GAAACACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
11564931 -AGAACACCCTCTATTTGTAAAATTATC
1 GA-AATACCCTCGATTTGTAAAATTACC
* * * *
11564958 AAAACACCCTCGATTTATAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
11564985 GAAATACCCTTG-TAGTGTAAAATTACC
1 GAAATACCCTCGAT-TTGTAAAATTACC
* * * *
11565012 AAAATACCCTTG-TAGTGTAAAATGACC
1 GAAATACCCTCGAT-TTGTAAAATTACC
*
11565039 GAGATACCC
1 GAAATACCC
11565048 CTGTAGGGTA
Statistics
Matches: 621, Mismatches: 114, Indels: 41
0.80 0.15 0.05
Matches are distributed among these distances:
25 17 0.03
26 169 0.27
27 426 0.69
28 9 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTACC
Found at i:11564736 original size:54 final size:53
Alignment explanation
Indices: 11564267--11565021 Score: 630
Period size: 53 Copynumber: 14.2 Consensus size: 53
11564257 GAAATTATTG
*
11564267 AAAT-CCCTCGATTTGTAAAATTATCGAAATACCTCCGATTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCGAAATACC-CTGATTTGTAAAATTACCA
* *
11564320 AAATACCCTCGATTATG--AAATTA-CTGAAATACCTTCAATTTGTAAAATTACCA
1 AAATACCCTCGATT-TGTAAAATTATC-GAAATACCCT-GATTTGTAAAATTACCA
* * * *
11564373 AAATACCCTCGATTTATAAAATTA-CTAAAATACCCTCGA-TTGTGAAATTACTA
1 AAATACCCTCGATTTGTAAAATTATC-GAAATACCCT-GATTTGTAAAATTACCA
* * * * * *
11564426 AAATCCCCTCGATTTGTAAAGTTATCGAAATACACTCGA-TTGTGAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCT-GATTTGTAAAATTACCA
* * * * * ***
11564479 AAATACCCCCGATTTGTAAAATTACCAAAATACCATTGA-TTGT-GAATTATTG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACC-CTGATTTGTAAAATTACCA
* * * * **
11564531 AAATACTCTCGATTTGTAAAATTATCAAAATACCCTCGA-CTGTGAAATTACTG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCT-GATTTGTAAAATTACCA
* * *
11564584 AAATACCCTC-AATTGTAAAATTA-CTAAAATACCCTCGATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTATC-GAAATACCCT-GATTTGTAAAATTACCA
* * * *
11564637 AAATACCCTCGA-TTGTGAAATTA-CTAAAATACTCTAGATTTGTAAAATTGCCA
1 AAATACCCTCGATTTGTAAAATTATC-GAAATACCCT-GATTTGTAAAATTACCA
* *
11564690 AAATACCCCCGATTTGTAAAATTATCGAAATACCCCTAATTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCGAAATA-CCCTGATTTGTAAAATTACCA
* * * * *
11564744 AAATATCCCT-GATTTGTGAAATTACCGAAACACCTTCGATTTGTAAAATTACCG
1 AAATA-CCCTCGATTTGTAAAATTATCGAAATACCCT-GATTTGTAAAATTACCA
* * * **
11564798 AAGTA-TCTCGATTTGTAAAATTATCGAAATACCCCCT-ATTTGTGAAATTACTG
1 AAATACCCTCGATTTGTAAAATTATCGAAATA--CCCTGATTTGTAAAATTACCA
* * * * * *
11564851 AAACACCCTCGATTTGTAAAATTACCGAAAAACCCTCTATTTCTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCT-GATTTGTAAAATTACCA
* * * * *
11564905 AAACACCCTCGATTTGTAAAATTA-CCAGAACACCCTCTATTTGTAAAATTATCA
1 AAATACCCTCGATTTGTAAAATTATCGA-AATACCCT-GATTTGTAAAATTACCA
* * *
11564959 AAACACCCTCGATTTATAAAATTATCGAAATACCCTTG-TAGTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCC-TGAT-TTGTAAAATTACCA
11565013 AAATACCCT
1 AAATACCCT
11565022 TGTAGTGTAA
Statistics
Matches: 590, Mismatches: 84, Indels: 55
0.81 0.12 0.08
Matches are distributed among these distances:
51 2 0.00
52 76 0.13
53 263 0.45
54 234 0.40
55 15 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
AAATACCCTCGATTTGTAAAATTATCGAAATACCCTGATTTGTAAAATTACCA
Found at i:11565031 original size:81 final size:83
Alignment explanation
Indices: 11564258--11565040 Score: 399
Period size: 80 Copynumber: 9.8 Consensus size: 83
11564248 TAATAAAGAG
* * * * *
11564258 AAATTATTGAAAT-CCCTCG-ATTTGTAAAATTATCGAAATA-CCTCCG-ATTTGTAAAATTACC
1 AAATTATCGAAATACCCTCGTATTTGTAAAATTACCAAAACACCCT-TGTATTTGTAAAATTACC
*
11564319 -AAAATACCCTCGA-TTATG
65 GAAAA-ACCCTCGATTTATA
* * * * *
11564337 AAATTA-CTGAAATACCTTC-AATTTGTAAAATTACCAAAATACCCTCG-ATTTATAAAATTA-C
1 AAATTATC-GAAATACCCTCGTATTTGTAAAATTACCAAAACACCCTTGTATTTGTAAAATTACC
* * *
11564398 TAAAATACCCTCGA-TTGTG
65 GAAAA-ACCCTCGATTTATA
* * * * * * * * * *
11564417 AAATTA-CTAAAATCCCCTCG-ATTTGTAAAGTTATCGAAATACACTCG-A-TTGTGAAATTATC
1 AAATTATC-GAAATACCCTCGTATTTGTAAAATTACCAAAACACCCTTGTATTTGTAAAATTACC
* * *
11564478 GAAATACCCCCGATTTGTA
65 GAAAAACCCTCGATTTATA
* * * * * *** * * * *
11564497 AAATTACCAAAATACCATTG-A-TTGT-GAATTATTGAAATACTCTCG-ATTTGTAAAATTATC-
1 AAATTATCGAAATACCCTCGTATTTGTAAAATTACCAAAACACCCTTGTATTTGTAAAATTACCG
* * *
11564557 AAAATACCCTCGA-CTGTG
66 AAAA-ACCCTCGATTTATA
* * * *
11564575 AAATTA-CTGAAATACCCTC--AATTGTAAAATTACTAAAATACCCTCG-ATTTGTAAAATTACC
1 AAATTATC-GAAATACCCTCGTATTTGTAAAATTACCAAAACACCCTTGTATTTGTAAAATTACC
* * *
11564636 GAAATACCCTCGA-TTGTG
65 GAAAAACCCTCGATTTATA
* * * * * ** *
11564654 AAATTA-CTAAAATACTCTAG-ATTTGTAAAATTGCCAAAATACCCCCG-ATTTGTAAAATTATC
1 AAATTATC-GAAATACCCTCGTATTTGTAAAATTACCAAAACACCCTTGTATTTGTAAAATTACC
* * *
11564716 GAAATACCC-CTAATTTGTA
65 GAAAAACCCTC-GATTTATA
* * * *
11564735 AAATTACCAAAATATCCCT-G-ATTTGTGAAATTACCGAAACA-CCTTCG-ATTTGTAAAATTAC
1 AAATTATCGAAATA-CCCTCGTATTTGTAAAATTACCAAAACACCCTT-GTATTTGTAAAATTAC
** * *
11564796 CGAAGTA-TCTCGATTTGTA
64 CGAAAAACCCTCGATTTATA
* * ** *
11564815 AAATTATCGAAATACCC-CCTATTTGTGAAATTACTGAAACACCCTCG-ATTTGTAAAATTACCG
1 AAATTATCGAAATACCCTCGTATTTGTAAAATTACCAAAACACCCTTGTATTTGTAAAATTACCG
* *
11564878 AAAAACCCTCTATTTCTA
66 AAAAACCCTCGATTTATA
* * * * *
11564896 AAATTACCGAAACACCCTCG-ATTTGTAAAATTACCAGAACACCC-TCTATTTGTAAAATTATC-
1 AAATTATCGAAATACCCTCGTATTTGTAAAATTACCAAAACACCCTTGTATTTGTAAAATTACCG
11564958 AAAACACCCTCGATTTATA
66 AAAA-ACCCTCGATTTATA
* * * * *
11564977 AAATTATCGAAATACCCTTGTA-GTGTAAAATTACCAAAATACCCTTGTA-GTGTAAAATGACCG
1 AAATTATCGAAATACCCTCGTATTTGTAAAATTACCAAAACACCCTTGTATTTGTAAAATTACCG
11565040 A
66 A
11565041 GATACCCCTG
Statistics
Matches: 578, Mismatches: 94, Indels: 61
0.79 0.13 0.08
Matches are distributed among these distances:
77 2 0.00
78 41 0.07
79 113 0.20
80 234 0.40
81 178 0.31
82 10 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (83 bp):
AAATTATCGAAATACCCTCGTATTTGTAAAATTACCAAAACACCCTTGTATTTGTAAAATTACCG
AAAAACCCTCGATTTATA
Found at i:11565052 original size:27 final size:27
Alignment explanation
Indices: 11564986--11565064 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
11564976 AAAATTATCG
*
11564986 AAATACCCTTGTAGTGTAAAATTACCA
1 AAATACCCTTGTAGTGTAAAATGACCA
*
11565013 AAATACCCTTGTAGTGTAAAATGACCG
1 AAATACCCTTGTAGTGTAAAATGACCA
* * *
11565040 AGATACCCCTGTAGGGTAAAATGAC
1 AAATACCCTTGTAGTGTAAAATGAC
11565065 TGTTTTTCCC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (27 bp):
AAATACCCTTGTAGTGTAAAATGACCA
Found at i:11566050 original size:21 final size:21
Alignment explanation
Indices: 11566025--11566107 Score: 94
Period size: 21 Copynumber: 3.9 Consensus size: 21
11566015 GGGGCACACA
*
11566025 GCCGTGTGATTGTGGCACATG
1 GCCGTGTGACTGTGGCACATG
* ** *
11566046 CCCGTGTGAAGAGAGGCACATG
1 GCCGTGTG-ACTGTGGCACATG
*
11566068 GCTGTGTGACTGTGGCACATG
1 GCCGTGTGACTGTGGCACATG
*
11566089 GTCGTGTGACTGTGGCACA
1 GCCGTGTGACTGTGGCACA
11566108 CACCCCTATG
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
21 34 0.68
22 16 0.32
ACGTcount: A:0.18, C:0.20, G:0.37, T:0.24
Consensus pattern (21 bp):
GCCGTGTGACTGTGGCACATG
Found at i:11566095 original size:64 final size:64
Alignment explanation
Indices: 11566027--11566150 Score: 167
Period size: 64 Copynumber: 1.9 Consensus size: 64
11566017 GGCACACAGC
* ** * * * * *
11566027 CGTGTGATTGTGGCACATGCCCGTGTGAAGAGAGGCACATGGCTGTGTGACTGTGGCACATGGT
1 CGTGTGACTGTGGCACACACCCCTATGAAAAAAGGCACACGGCTGTGTGACTGTGGCACATGGT
*
11566091 CGTGTGACTGTGGCACACACCCCTATGAAAAAAGGTACACGGCTGTGTGACTGTGGCACA
1 CGTGTGACTGTGGCACACACCCCTATGAAAAAAGGCACACGGCTGTGTGACTGTGGCACA
11566151 CACTCATGTG
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.23
Consensus pattern (64 bp):
CGTGTGACTGTGGCACACACCCCTATGAAAAAAGGCACACGGCTGTGTGACTGTGGCACATGGT
Found at i:11566139 original size:43 final size:43
Alignment explanation
Indices: 11566092--11566198 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
11566082 GCACATGGTC
* *
11566092 GTGTGACTGTGGCACACACCCCTATGAAAAAAGGTACACGGCT
1 GTGTGACTGTGGCACACACCCATATGAAAAAAGGCACACGGCT
* * ** * *
11566135 GTGTGACTGTGGCACACACTCATGTGAGGAGAGGCACATGGCT
1 GTGTGACTGTGGCACACACCCATATGAAAAAAGGCACACGGCT
**
11566178 GTGTGACTGAAGCACACACCC
1 GTGTGACTGTGGCACACACCC
11566199 GTGTGGACTA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.27, C:0.25, G:0.29, T:0.19
Consensus pattern (43 bp):
GTGTGACTGTGGCACACACCCATATGAAAAAAGGCACACGGCT
Found at i:11575636 original size:27 final size:27
Alignment explanation
Indices: 11575606--11575685 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 27
11575596 CCTTAATCAA
*
11575606 TAAAATGACTGTTTTGCGCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
11575633 TAAAATCACTATTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
11575660 TAAGATGACTGTTTTGCCCCTATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
11575686 AGGTATATAT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:11577381 original size:39 final size:33
Alignment explanation
Indices: 11577306--11577386 Score: 126
Period size: 33 Copynumber: 2.5 Consensus size: 33
11577296 GTGAATAACA
11577306 CAGTATCAGTACAGTCTAGGCCAAAGCCCTATT
1 CAGTATCAGTACAGTCTAGGCCAAAGCCCTATT
* *
11577339 CAGTATCAGTACAGTCTGGGCCTAAGCCCTATT
1 CAGTATCAGTACAGTCTAGGCCAAAGCCCTATT
* *
11577372 TAGTATCAGTGCAGT
1 CAGTATCAGTACAGT
11577387 GCAAAATGCA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (33 bp):
CAGTATCAGTACAGTCTAGGCCAAAGCCCTATT
Found at i:11582268 original size:27 final size:27
Alignment explanation
Indices: 11582226--11582335 Score: 150
Period size: 27 Copynumber: 4.1 Consensus size: 27
11582216 CATACCTGGA
* * *
11582226 CCCTTA-ATGATAAAATGATTGTTTTT
1 CCCTTATATGGTAAAATGACTGTTTTG
*
11582252 CCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
*
11582279 CCCTTATATGGTAAAATGACTATTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
* *
11582306 CCCTTATATGGTAAGATGATTGTTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
11582333 CCC
1 CCC
11582336 CTATGTGAGG
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 6 0.08
27 68 0.92
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42
Consensus pattern (27 bp):
CCCTTATATGGTAAAATGACTGTTTTG
Found at i:11587626 original size:43 final size:42
Alignment explanation
Indices: 11587590--11587748 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 42
11587580 TATGTATTCC
*
11587590 CATGTAAGACCATGTCTAGGACGTTGGCATCGATATGTGATT
1 CATGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATT
* * *
11587632 -TTGAGTAAGACCATGTCTGGGACATCGGCATCG-TAATTGTGATT
1 CAT--GTAAGACCATGTCTGGGACGTTGGCATCGAT-A-TGTGATT
* *
11587676 CGTGTAAGACCATGTCTGGGACAG-TGGCATCGACATGTGATT
1 CATGTAAGACCATGTCTGGGAC-GTTGGCATCGATATGTGATT
* *
11587718 ACATGTAAGACCACGTCTGGGACGTTAGCAT
1 -CATGTAAGACCATGTCTGGGACGTTGGCAT
11587749 TGTACGATAT
Statistics
Matches: 97, Mismatches: 11, Indels: 17
0.78 0.09 0.14
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 79 0.81
44 7 0.07
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (42 bp):
CATGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATT
Found at i:11590431 original size:26 final size:28
Alignment explanation
Indices: 11590373--11590432 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
11590363 TGTCTAGGCT
* *
11590373 GTGTGGTTCACACAGCCGTATCGCAGCC
1 GTGTGGTTCACACAGCCATATCACAGCC
** *
11590401 GTGTGGTTCACATGGCCATATCACAGCT
1 GTGTGGTTCACACAGCCATATCACAGCC
11590429 GTGT
1 GTGT
11590433 TTTACGTTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.18, C:0.27, G:0.28, T:0.27
Consensus pattern (28 bp):
GTGTGGTTCACACAGCCATATCACAGCC
Found at i:11595254 original size:21 final size:22
Alignment explanation
Indices: 11595228--11595271 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
11595218 GTCTGATACG
11595228 ACACACGAGGTGCCTGAAATATT
1 ACACA-GAGGTGCCTGAAATATT
*
11595251 ACACAAGTGGTGCCTGAAATA
1 ACAC-AGAGGTGCCTGAAATA
11595272 CGACACATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (22 bp):
ACACAGAGGTGCCTGAAATATT
Found at i:11595254 original size:23 final size:23
Alignment explanation
Indices: 11595160--11595278 Score: 106
Period size: 21 Copynumber: 5.4 Consensus size: 23
11595150 CCTGATCAAT
** *
11595160 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
* *
11595182 A-ACGACACACGAGGT-CCCG-G
1 ATACGACACACGAGGTGCCTGAA
*
11595202 ATACGACACACGAGGTGTCTG--
1 ATACGACACACGAGGTGCCTGAA
11595223 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
** * *
11595246 ATATTACACAAGTGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
11595269 ATACGACACA
1 ATACGACACA
11595279 TAAAGTGCCT
Statistics
Matches: 78, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
20 3 0.04
21 45 0.58
22 3 0.04
23 27 0.35
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:11595686 original size:15 final size:15
Alignment explanation
Indices: 11595661--11595718 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
11595651 TCATATATAT
11595661 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
11595677 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
11595692 AATAATTTCAATCAA
1 TATAAATTCAATCAA
11595707 TATAAATTCAAT
1 TATAAATTCAAT
11595719 AAAATAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:11595703 original size:30 final size:28
Alignment explanation
Indices: 11595664--11595724 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 28
11595654 TATATATTAT
11595664 ATAATTCAATCAATATAAATTCAATCAAA
1 ATAATTCAATCAATATAAATTCAAT-AAA
11595693 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAA-TTCAATCAATATAAATTCAATAAA
11595722 ATA
1 ATA
11595725 GATATTCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.32
30 21 0.68
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:11600426 original size:19 final size:19
Alignment explanation
Indices: 11600390--11600428 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
11600380 TTTTCATCAT
*
11600390 AGTAAAATAAAATAATAAA
1 AGTAAAATAAAACAATAAA
*
11600409 AGTAAAATAAAACCATAAA
1 AGTAAAATAAAACAATAAA
11600428 A
1 A
11600429 ATAATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (19 bp):
AGTAAAATAAAACAATAAA
Found at i:11600932 original size:28 final size:27
Alignment explanation
Indices: 11600900--11600981 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
11600890 GTCACTAGAT
11600900 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATA-TTTGTGGCAGTGCCACCAGA
** * *
11600928 ACAGATATACGTGGCCGGGCCACCAGA
1 ACAGATATTTGTGGCAGTGCCACCAGA
11600955 ACAGATAATTTGTGGCA-TAGCCACCAG
1 ACAGAT-ATTTGTGGCAGT-GCCACCAG
11600982 GACGCTTCCT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
27 22 0.50
28 22 0.50
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGTGCCACCAGA
Found at i:11601134 original size:28 final size:28
Alignment explanation
Indices: 11601087--11601151 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
11601077 AAATTAACCC
*
11601087 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
11601115 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
11601143 TAGGGGTAT
1 TAGGGGTAT
11601152 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:11604448 original size:23 final size:22
Alignment explanation
Indices: 11604338--11604489 Score: 134
Period size: 21 Copynumber: 7.0 Consensus size: 22
11604328 CCTAATCAGT
* *
11604338 ATACGACACATAAAGTGCCT-A
1 ATACGACACACAAGGTGCCTGA
* *
11604359 AAACGACACACGAGGTGCCTG-
1 ATACGACACACAAGGTGCCTGA
* * *
11604380 ATTCAACACACGAGGTGCCTG-
1 ATACGACACACAAGGTGCCTGA
** *
11604401 ATACGACACACGTGGTGTCTG-
1 ATACGACACACAAGGTGCCTGA
11604422 ATACGACACACAAGGTGCCTGAA
1 ATACGACACACAAGGTGCCTG-A
11604445 ATACGACACA-AGAGGTGCCTGAA
1 ATACGACACACA-AGGTGCCTG-A
* *
11604468 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAGGTGCCTGA
11604490 TTGATAAAGC
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
21 69 0.62
22 2 0.02
23 39 0.35
24 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (22 bp):
ATACGACACACAAGGTGCCTGA
Found at i:11604884 original size:15 final size:15
Alignment explanation
Indices: 11604859--11604916 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
11604849 ATCATAATAT
11604859 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
11604875 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
11604890 AATAATTTCAATCAA
1 TATAAATTCAATCAA
11604905 TATAAATTCAAT
1 TATAAATTCAAT
11604917 AAAATAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:11604901 original size:30 final size:28
Alignment explanation
Indices: 11604862--11604922 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 28
11604852 ATAATATTAT
11604862 ATAATTCAATCAATATAAATTCAATCAAA
1 ATAATTCAATCAATATAAATTCAAT-AAA
11604891 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAA-TTCAATCAATATAAATTCAATAAA
11604920 ATA
1 ATA
11604923 GATATTCATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.32
30 21 0.68
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:11605079 original size:2 final size:2
Alignment explanation
Indices: 11605072--11605113 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
11605062 ATATCTCATT
11605072 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
11605114 TATATATATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:11614443 original size:18 final size:18
Alignment explanation
Indices: 11614420--11614477 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 18
11614410 TATTGTTGTC
11614420 AATAGTAAATTACAACGA
1 AATAGTAAATTACAACGA
** * *
11614438 AATAGTTTTATT-GAA-GG
1 AATAG-TAAATTACAACGA
11614455 AATA-TAAATTACAACGA
1 AATAGTAAATTACAACGA
11614472 AATAGT
1 AATAGT
11614478 TGCATCAAGT
Statistics
Matches: 28, Mismatches: 8, Indels: 8
0.64 0.18 0.18
Matches are distributed among these distances:
15 4 0.14
16 2 0.07
17 10 0.36
18 8 0.29
19 4 0.14
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (18 bp):
AATAGTAAATTACAACGA
Found at i:11618318 original size:42 final size:41
Alignment explanation
Indices: 11618202--11618352 Score: 126
Period size: 43 Copynumber: 3.6 Consensus size: 41
11618192 GTCTGAGATA
* * *
11618202 TCATGTAAGACCGTGTCTGGGAC-GTAGGCTTCGATTGAGATT
1 TCATGTAAGACCATGTCTGGGACAG-AGGCATCGATT-TGATT
* * *
11618244 TACATATAAGACAATGTCTGGGACATCA-GCATCGTATTTGATT
1 T-CATGTAAGACCATGTCTGGGACA-GAGGCATCG-ATTTGATT
* *
11618287 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATT
1 TCATGTAAGACCATGTCTGGGACAGAGGCATCGAT-TTG-ATT
* * *
11618330 ACATGTAAGACCACGTCTAGGAC
1 TCATGTAAGACCATGTCTGGGAC
11618353 GACAACATTG
Statistics
Matches: 86, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.03
42 29 0.34
43 50 0.58
44 4 0.05
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (41 bp):
TCATGTAAGACCATGTCTGGGACAGAGGCATCGATTTGATT
Found at i:11620247 original size:24 final size:24
Alignment explanation
Indices: 11620219--11620270 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
11620209 TTCGTAGGTC
* *
11620219 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
* *
11620243 AAATATATTATACTACTAAATACT
1 AAATAAATTATACTAATAAATACT
11620267 AAAT
1 AAAT
11620271 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:11623678 original size:39 final size:39
Alignment explanation
Indices: 11623603--11623678 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
11623593 ATGAAAAATA
* * * *
11623603 TTAGATATTTTGGTATTTGGTGACAAATTTGGGTATCCT
1 TTAGAAATTTTGGTATTTGATGAAAAATTTGAGTATCCT
*
11623642 TTAGAAATTTTGGTATTTGATTAAAAACTTT-AGTATC
1 TTAGAAATTTTGGTATTTGATGAAAAA-TTTGAGTATC
11623679 ATCTATTAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
39 28 0.90
40 3 0.10
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (39 bp):
TTAGAAATTTTGGTATTTGATGAAAAATTTGAGTATCCT
Found at i:11623787 original size:21 final size:21
Alignment explanation
Indices: 11623761--11623803 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
11623751 GAAATTTTGG
* *
11623761 TATTTTGGTATCTCTTAAAAA
1 TATTTTAGTATCTATTAAAAA
*
11623782 TATTTTAGTATCTATTAGAAA
1 TATTTTAGTATCTATTAAAAA
11623803 T
1 T
11623804 TCTGGTACCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.49
Consensus pattern (21 bp):
TATTTTAGTATCTATTAAAAA
Found at i:11623865 original size:20 final size:19
Alignment explanation
Indices: 11623818--11623882 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
11623808 GTACCCATAG
11623818 AAAATTTTGATATCTGTTA
1 AAAATTTTGATATCTGTTA
*
11623837 AAAACTTTTGATATTTGGTTA
1 AAAA-TTTTGATATCT-GTTA
* *
11623858 CAAATTTT--TGTCTGTTA
1 AAAATTTTGATATCTGTTA
*
11623875 GAAATTTT
1 AAAATTTT
11623883 TGTACAATCC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
17 11 0.28
18 3 0.08
19 4 0.10
20 14 0.36
21 7 0.18
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.49
Consensus pattern (19 bp):
AAAATTTTGATATCTGTTA
Found at i:11626339 original size:19 final size:20
Alignment explanation
Indices: 11626302--11626340 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
11626292 AGGCACACGC
*
11626302 CCGTGTGGCCTAGGACATGG
1 CCGTGTGGCCTAGCACATGG
*
11626322 CCGTGTGG-CTAGCCCATGG
1 CCGTGTGGCCTAGCACATGG
11626341 GGATCCCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.13, C:0.28, G:0.38, T:0.21
Consensus pattern (20 bp):
CCGTGTGGCCTAGCACATGG
Found at i:11627411 original size:52 final size:51
Alignment explanation
Indices: 11627343--11627497 Score: 168
Period size: 52 Copynumber: 3.0 Consensus size: 51
11627333 ATATATCATA
* * * *
11627343 CCGATGCCATATCCCAGATATGGACTTACACGATAGCACTTATCACTTTTCT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGATA-CACTTATCACTTTTCT
* * *
11627395 CCGATACCATAGCCCAGCTATGGTCTTATATGGAT-CACTTATCACTTGTTTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATA-CGATACACTTATCACTT-TTCT
* * *
11627447 CTGATGCCATAGCCCAGCTATGGTTTTATACAGATATCACATATCACTTTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATAC-GATA-CACTTATCACTTTT
11627498 TTCCATGGTC
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
51 12 0.14
52 58 0.67
53 5 0.06
54 11 0.13
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (51 bp):
CCGATGCCATAGCCCAGCTATGGTCTTATACGATACACTTATCACTTTTCT
Found at i:11638009 original size:17 final size:17
Alignment explanation
Indices: 11637984--11638035 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
11637974 ATCTTTGTAG
11637984 AAAGAAAAAAGAGAAA-T
1 AAAG-AAAAAGAGAAATT
*
11638001 AGAAGAAAAAGATAAATTT
1 A-AAGAAAAAGAGAAA-TT
11638020 AAAGAAAAGAGAGAAA
1 AAAGAAAA-AGAGAAA
11638036 CTTTCCATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 11 0.38
18 10 0.34
19 8 0.28
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (17 bp):
AAAGAAAAAGAGAAATT
Found at i:11642146 original size:23 final size:23
Alignment explanation
Indices: 11642120--11642169 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
11642110 TTGGTGGGAG
11642120 CATTTTGCCACTTCGATGCATAT
1 CATTTTGCCACTTCGATGCATAT
* * *
11642143 CATTTTGGCACTTTGCTGCATAT
1 CATTTTGCCACTTCGATGCATAT
11642166 CATT
1 CATT
11642170 CAGGCACTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (23 bp):
CATTTTGCCACTTCGATGCATAT
Found at i:11642175 original size:23 final size:23
Alignment explanation
Indices: 11642134--11642188 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
11642124 TTGCCACTTC
** *
11642134 GATGCATATCATTTTGGCACTTT
1 GATGCATATCATTCAGGCACTAT
*
11642157 GCTGCATATCATTCAGGCACTAT
1 GATGCATATCATTCAGGCACTAT
11642180 GATGCATAT
1 GATGCATAT
11642189 TATACTATGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (23 bp):
GATGCATATCATTCAGGCACTAT
Found at i:11642851 original size:21 final size:21
Alignment explanation
Indices: 11642797--11642851 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
11642787 GTGGTCAAAG
*
11642797 GGACACA-CCTGTGTGACCTTA
1 GGACACATCC-GTGTCACCTTA
* *
11642818 GGATAGGAT-CGTGTCACCTTA
1 GGACA-CATCCGTGTCACCTTA
11642839 GGACACATCCGTG
1 GGACACATCCGTG
11642852 CTACAGGTCG
Statistics
Matches: 26, Mismatches: 5, Indels: 6
0.70 0.14 0.16
Matches are distributed among these distances:
20 2 0.08
21 22 0.85
22 2 0.08
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (21 bp):
GGACACATCCGTGTCACCTTA
Found at i:11651738 original size:47 final size:47
Alignment explanation
Indices: 11651672--11651772 Score: 138
Period size: 47 Copynumber: 2.2 Consensus size: 47
11651662 GCCTGACTGA
*
11651672 GACAT-GCATCGGCTATGAGATGAT-AG-TCAGTGTAAGACCATGTCTGG
1 GACATGGCATCGACTATGAGAT-ATGAGCT-AGTGTAAGACCATG-CTGG
11651719 GACATGGCATCGACT-TGAGATATGAGCTAGTGTAAGACCATGCTGG
1 GACATGGCATCGACTATGAGATATGAGCTAGTGTAAGACCATGCTGG
11651765 GACATGGC
1 GACATGGC
11651773 GTCGGCACCT
Statistics
Matches: 50, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
46 14 0.28
47 27 0.54
48 9 0.18
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
GACATGGCATCGACTATGAGATATGAGCTAGTGTAAGACCATGCTGG
Found at i:11669245 original size:25 final size:25
Alignment explanation
Indices: 11669217--11669264 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11669207 TTATAATATG
* * *
11669217 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
11669242 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
11669265 GTATTTGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:11669323 original size:20 final size:21
Alignment explanation
Indices: 11669288--11669344 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
11669278 TGATATGTGG
11669288 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
11669306 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
11669327 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
11669345 GTAATCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:11669423 original size:25 final size:26
Alignment explanation
Indices: 11669394--11669528 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
11669384 GAGGAAGTGC
*
11669394 AAAAAGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
11669420 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
11669446 AAAAGAGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
11669472 AAAAGGGCTT-TGCCCCAGTTGA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
11669496 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
11669519 AAAAGAGGCT
1 AAAAG-GGCT
11669529 AGGCCTCCAG
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
23 7 0.07
24 24 0.24
25 11 0.11
26 57 0.58
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:11669777 original size:31 final size:31
Alignment explanation
Indices: 11669739--11669802 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
11669729 CCGTTAAACG
11669739 AAAGGCTTCGACCCACTAATATGAAATATGA
1 AAAGGCTTCGACCCACTAATATGAAATATGA
* * **
11669770 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCACTAATATGAAATATGA
11669801 AA
1 AA
11669803 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCACTAATATGAAATATGA
Found at i:11677444 original size:25 final size:25
Alignment explanation
Indices: 11677416--11677463 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
11677406 TTATAATATG
* *
11677416 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACTATTATACCCCTAGGTA
11677441 AAAATGACTATTATACCCCTAGG
1 AAAATGACTATTATACCCCTAGG
11677464 GTATTTGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACTATTATACCCCTAGGTA
Found at i:11677502 original size:9 final size:10
Alignment explanation
Indices: 11677490--11677546 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
11677480 TATGTGGGAT
11677490 ATGATAT-AC
1 ATGATATGAC
*
11677499 ATGAT-TGAT
1 ATGATATGAC
11677508 ATGATATGCAC
1 ATGATATG-AC
*
11677519 ATGATATG-T
1 ATGATATGAC
11677528 ATGATATGCAC
1 ATGATATG-AC
11677539 ATGATATG
1 ATGATATG
11677547 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:11677522 original size:20 final size:20
Alignment explanation
Indices: 11677489--11677563 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
11677479 ATATGTGGGA
11677489 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
11677506 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
11677527 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
11677547 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
11677564 GTAATCATAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:11677524 original size:11 final size:11
Alignment explanation
Indices: 11677508--11677563 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
11677498 CATGATTGAT
11677508 ATGATATGCAC
1 ATGATATGCAC
*
11677519 ATGATATG--T
1 ATGATATGCAC
11677528 ATGATATGCAC
1 ATGATATGCAC
*
11677539 ATGATATG--T
1 ATGATATGCAC
*
11677548 ATGAAATGCAC
1 ATGATATGCAC
11677559 ATGAT
1 ATGAT
11677564 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:11677642 original size:26 final size:25
Alignment explanation
Indices: 11677613--11677696 Score: 109
Period size: 26 Copynumber: 3.4 Consensus size: 25
11677603 GAGGAAGTGC
*
11677613 AAAAGGGCTTATGCCCTAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
* *
11677638 GAAAAGGGCTTATGCCCCAGTTGATC
1 -AAAAGGGCTTATGCCCCAGTTTATT
11677664 AAAAGGGCTT-TGCCCCAG-TTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
11677687 AAAAGAGGCT
1 AAAAG-GGCT
11677697 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
23 8 0.15
24 12 0.23
25 10 0.19
26 22 0.42
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTTATT
Found at i:11677682 original size:24 final size:24
Alignment explanation
Indices: 11677612--11677710 Score: 103
Period size: 25 Copynumber: 4.0 Consensus size: 24
11677602 GGAGGAAGTG
*
11677612 CAAAAGGGCTTATGCCCTAGTTTATT
1 CAAAAGGGCTTATGCCCCAG-TTA-T
*
11677638 GAAAAGGGCTTATGCCCCAGTTGAT
1 CAAAAGGGCTTATGCCCCAGTT-AT
11677663 CAAAAGGGCTT-TGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
11677686 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
11677711 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
23 8 0.12
24 16 0.25
25 21 0.33
26 19 0.30
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:11677975 original size:38 final size:38
Alignment explanation
Indices: 11677924--11677998 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
11677914 TCGACCTAGT
*
11677924 AATATGAAATATGAAAAGGCTTCGGCCCAGTGTTATGA
1 AATATGAAATATGAAAAGGCTTCAGCCCAGTGTTATGA
11677962 AATATGAAATATGAAAAGGCTTCAGCCCAGTGTTATG
1 AATATGAAATATGAAAAGGCTTCAGCCCAGTGTTATG
11677999 TTGAGAATGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCAGCCCAGTGTTATGA
Found at i:11685417 original size:45 final size:45
Alignment explanation
Indices: 11685353--11685442 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
11685343 TGAAGAGTAT
11685353 AATAGAAGAAGAAAATCTTGATAATCTTAATTATACAGATTAAAA
1 AATAGAAGAAGAAAATCTTGATAATCTTAATTATACAGATTAAAA
11685398 AATAGAAGAAGAAAATCTTGATAATCTTAATTATACAGATTAAAA
1 AATAGAAGAAGAAAATCTTGATAATCTTAATTATACAGATTAAAA
11685443 TTCAAATAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.53, C:0.07, G:0.11, T:0.29
Consensus pattern (45 bp):
AATAGAAGAAGAAAATCTTGATAATCTTAATTATACAGATTAAAA
Found at i:11685779 original size:5 final size:5
Alignment explanation
Indices: 11685769--11685800 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
11685759 TATACTGTGA
11685769 AAAAT AAAAT AAAAT -AAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
11685801 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:11685789 original size:14 final size:14
Alignment explanation
Indices: 11685770--11685800 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
11685760 ATACTGTGAA
11685770 AAATAAAATAAAAT
1 AAATAAAATAAAAT
11685784 AAATAAAATAAAAT
1 AAATAAAATAAAAT
11685798 AAA
1 AAA
11685801 GAACACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:11702983 original size:34 final size:35
Alignment explanation
Indices: 11702940--11703017 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 35
11702930 TGACTGCTAT
*
11702940 TGATACTGTGATGGGATAAGGTCCTAATGCATA-C
1 TGATACTGTGATGGGATAAGGCCCTAATGCATATC
* * *
11702974 TGATACTGTGATGGGCTAAGGCCCTACTGCATATT
1 TGATACTGTGATGGGATAAGGCCCTAATGCATATC
11703009 TGATACTGT
1 TGATACTGT
11703018 ACTGAGATAG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
34 30 0.77
35 9 0.23
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (35 bp):
TGATACTGTGATGGGATAAGGCCCTAATGCATATC
Found at i:11703858 original size:25 final size:26
Alignment explanation
Indices: 11703816--11703872 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
11703806 ATGCTATTCA
11703816 AAAACTACTATAGGTAGTATACT-TTG
1 AAAACTACTATAGGTAGTATA-TATTG
* *
11703842 AAAA-TACTCTAGTTAGTATATATTG
1 AAAACTACTATAGGTAGTATATATTG
11703867 AAAACT
1 AAAACT
11703873 GTAGTTAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 1 0.04
25 21 0.78
26 5 0.19
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (26 bp):
AAAACTACTATAGGTAGTATATATTG
Found at i:11718746 original size:30 final size:30
Alignment explanation
Indices: 11718702--11718790 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
11718692 CAAAGATAAC
11718702 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
11718731 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
11718761 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
11718791 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:11718750 original size:15 final size:15
Alignment explanation
Indices: 11718702--11718781 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
11718692 CAAAGATAAC
*
11718702 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
11718716 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
11718731 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
11718746 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
11718761 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
11718776 AAGAAA
1 AAGAAA
11718782 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:11718790 original size:15 final size:15
Alignment explanation
Indices: 11718713--11718790 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
11718703 AGAAAACCGA
11718713 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
11718728 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
11718742 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
11718757 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
11718773 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
11718788 ATA
1 ATA
11718791 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:11724334 original size:12 final size:12
Alignment explanation
Indices: 11724319--11724344 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11724309 GTAAGAATTG
11724319 AAGTAATTACAC
1 AAGTAATTACAC
11724331 AAGTAATTACAC
1 AAGTAATTACAC
11724343 AA
1 AA
11724345 AAATCTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (12 bp):
AAGTAATTACAC
Found at i:11742699 original size:176 final size:175
Alignment explanation
Indices: 11742400--11743028 Score: 669
Period size: 176 Copynumber: 3.6 Consensus size: 175
11742390 TGAAAATTGA
** * * * * * *
11742400 AGATCTTATCTCCCTGAAGTTGCAGCGGAGCATATCGAAGATGGTGAATCTTATCTCTATGTATC
1 AGAT-TTATCTCCCT-AAGCAGTAGCGGAGCAGATCAAAAATGGCGAATCTTATCTCCATGTATC
* * * *
11742465 GGTAATGGAGCAAATTTTACCACCAGCCTTATCTCCCTAAAGTTACAGTGGAGCAGGCTCAATAT
64 GGTAATGGAGCAGATTTAAGCACAAGCCTTATCTCCCTAAAGTTACAGTGGAGCAGGCTCAATAT
* *
11742530 ACAAGTTTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAAATCAC
129 ACAAGTCTTATCTCCCTGAGGTTGCAGTGGAACAGACTGAAAATCAC
* *
11742577 AGATTTATCTCCCTAAGCAGTAGCGGAGTAGATCAAAAATGGCGAATCTTATCTCCATGTATCAG
1 AGATTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAAATGGCGAATCTTATCTCCATGTATCGG
* *
11742642 TAATGGAGCAGATTTAAGCAACAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTCAATATA
66 TAATGGAGCAGATTTAAGC-ACAAGCCTTATCTCCCTAAAGTTACAGTGGAGCAGGCTCAATATA
11742707 CAAGTCTTATCTCCCTGAGGTTGCAGTGGAACAGACTGAAAATCAC
130 CAAGTCTTATCTCCCTGAGGTTGCAGTGGAACAGACTGAAAATCAC
* * *
11742753 AGATTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGCGAATATTATCTCCATGTATCGG
1 AGATTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAAATGGCGAATCTTATCTCCATGTATCGG
* * * * * * * *
11742818 CAATGGAGCAGATTTAAGTCACAAGCCCTATCTCTCTAAGGTAGTA-AG-AGAGCAGGTTGAAGA
66 TAATGGAGCAGATTTAAG-CACAAGCCTTATCTCCCTAAAGT--TACAGTGGAGCAGGCTCAATA
** * * * * * * *
11742881 -ATGAGTCTTATCTTCTTGAGGTAGCA-AGGAAGCAGATTGAGAATTGA-
128 TACAAGTCTTATCTCCCTGAGGTTGCAGTGGAA-CAGACTGA-AAATCAC
* ** * * * *
11742928 AGATTTTATCTCCCTAA--AGTTGCAGTAGAGCAGATTGAGAATAGTGAATCTTATCTCTATGTA
1 AGA-TTTATCTCCCTAAGCAGTAGC-G--GAGCAGATCAAAAATGGCGAATCTTATCTCCATGTA
**
11742991 TCGACAATGGAGCAGATTTAAGCCACAAGCCTTATCTC
62 TCGGTAATGGAGCAGATTTAAG-CACAAGCCTTATCTC
11743029 TCTGAGGTAG
Statistics
Matches: 389, Mismatches: 53, Indels: 20
0.84 0.11 0.04
Matches are distributed among these distances:
174 9 0.02
175 89 0.23
176 219 0.56
177 71 0.18
178 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (175 bp):
AGATTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAAATGGCGAATCTTATCTCCATGTATCGG
TAATGGAGCAGATTTAAGCACAAGCCTTATCTCCCTAAAGTTACAGTGGAGCAGGCTCAATATAC
AAGTCTTATCTCCCTGAGGTTGCAGTGGAACAGACTGAAAATCAC
Found at i:11742761 original size:44 final size:44
Alignment explanation
Indices: 11742492--11742766 Score: 127
Period size: 44 Copynumber: 6.2 Consensus size: 44
11742482 TACCACCAGC
* * * * *
11742492 CTTATCTCCCTAAAGTTACAGTGGAGCAGGCTCAATATACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGACTCAAAATACAAGT
* * * *
11742536 TTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAAAT-CACAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGACTCAAAATACA-AG-T
** * * ** *
11742581 -TTATCTCCCT-AAGCAGTAGCGGAGTAGA-TCAAAAATGGCGAA-T
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGACTC-AAAAT-AC-AAGT
* * * * * * * * * *
11742624 CTTATCTCCATGTA-TCAGTAATGGAGCAGATTTAAGCA-ACAAGC
1 CTTATCTCCCTGAAGT-TGCAGTGGAACAGACTCAA-AATACAAGT
* * *
11742668 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTCAATATACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGACTCAAAATACAAGT
* *
11742712 CTTATCTCCCTGAGGTTGCAGTGGAACAGACTGAAAAT-CACAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGACTCAAAATACA-AG-T
11742757 -TTATCTCCCT
1 CTTATCTCCCT
11742767 AAGCAGTAGC
Statistics
Matches: 176, Mismatches: 39, Indels: 32
0.71 0.16 0.13
Matches are distributed among these distances:
42 1 0.01
43 25 0.14
44 128 0.73
45 19 0.11
46 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAACAGACTCAAAATACAAGT
Found at i:11742805 original size:88 final size:87
Alignment explanation
Indices: 11742537--11742808 Score: 250
Period size: 88 Copynumber: 3.1 Consensus size: 87
11742527 TATACAAGTT
11742537 TTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAAATCACAGATTTATCTCCCTAAGCAGTAGCG
1 TTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAAATCACAGATTTATCTCCCTAAGCAGTAGCG
*
11742602 GAGTAGATCAAAAATGGCGAATC
66 GAGCAGATC-AAAATGGCGAATC
* * * * * * ** **
11742625 TTATCTCCATGTA--TCAGTAATGGAGCAGATTTAAGCAA-CA-AGCCTTATCTCCCTGAAGTTG
1 TTATCTCCCTG-AGGT-TGCAGTGGAGCAGACTGAA--AATCACAGATTTATCTCCCT-AAGCAG
* * * * *
11742686 CAGTGGAGCAGGCTCAATAT-AC-AAGTC
61 TAGCGGAGCA-GATCAAAATGGCGAA-TC
*
11742713 TTATCTCCCTGAGGTTGCAGTGGAACAGACTGAAAATCACAGATTTATCTCCCTAAGCAGTAGCG
1 TTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAAATCACAGATTTATCTCCCTAAGCAGTAGCG
* *
11742778 GAGCAGATCGAAGATGGCGAATA
66 GAGCAGATC-AAAATGGCGAATC
11742801 TTATCTCC
1 TTATCTCC
11742809 ATGTATCGGC
Statistics
Matches: 137, Mismatches: 33, Indels: 28
0.69 0.17 0.14
Matches are distributed among these distances:
86 5 0.04
87 22 0.16
88 84 0.61
89 21 0.15
90 5 0.04
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (87 bp):
TTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAAATCACAGATTTATCTCCCTAAGCAGTAGCG
GAGCAGATCAAAATGGCGAATC
Found at i:11742850 original size:88 final size:87
Alignment explanation
Indices: 11742581--11742857 Score: 224
Period size: 88 Copynumber: 3.1 Consensus size: 87
11742571 AATCACAGAT
* *
11742581 TTATCTCCCTAAGCAGTAGCGGAGTAGATCAAAAATGGCGAATCTTATCTCCATGTATCAGTAAT
1 TTATCTCCCTAAGCAGTAGCGGAGCAGATC-AAAATGGCGAATCTTATCTCCATGTATCAGCAAT
11742646 GGAGCAGATTTAAG-CAACAAGCC
65 GGAGCAGATTTAAGTC-ACAAGCC
** * * * * * * *
11742669 TTATCTCCCTGAAGTTGCAGTGGAGCAGGCTCAATAT-AC-AAGTCTTATCTCCCTG-AGGT-TG
1 TTATCTCCCT-AAGCAGTAGCGGAGCA-GATCAAAATGGCGAA-TCTTATCTCCATGTA--TCAG
* * ** * **
11742730 CAGTGGAACAGACTGAAAATCAC-AGAT
61 CAATGGAGCAGA-TTTAAGTCACAAGCC
* * *
11742757 TTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGCGAATATTATCTCCATGTATCGGCAAT
1 TTATCTCCCTAAGCAGTAGCGGAGCAGATC-AAAATGGCGAATCTTATCTCCATGTATCAGCAAT
11742822 GGAGCAGATTTAAGTCACAAGCC
65 GGAGCAGATTTAAGTCACAAGCC
* *
11742845 CTATCTCTCTAAG
1 TTATCTCCCTAAG
11742858 GTAGTAAGAG
Statistics
Matches: 139, Mismatches: 37, Indels: 26
0.69 0.18 0.13
Matches are distributed among these distances:
86 3 0.02
87 27 0.19
88 81 0.58
89 24 0.17
90 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (87 bp):
TTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAATGGCGAATCTTATCTCCATGTATCAGCAATG
GAGCAGATTTAAGTCACAAGCC
Found at i:11742915 original size:87 final size:86
Alignment explanation
Indices: 11742824--11743095 Score: 223
Period size: 87 Copynumber: 3.1 Consensus size: 86
11742814 TCGGCAATGG
* *
11742824 AGCAGATTTAAGTCACAAGCCCTATCTCTCTAAGGTAGTAAGAGAGCAGGTTGAAGAATGAGTCT
1 AGCAGATTTAAGTCACAAGCCTTATCTCTCTAAGGTAG-AAGAGAGCAGATTGAAGAATGAGTCT
11742889 TATCTTCTTGAGGTAGCAAGGA
65 TATCTTCTTGAGGTAGCAAGGA
* * ** ** * * * *
11742911 AGCAGATTGAGAAT-TGAAGATTTTATCTCCCTAAAGTTGCAGTAGAGCAGATTG-AGAATAGTG
1 AGCAGATTTA-AGTCACAAG-CCTTATCTCTCTAAGGTAGAAG-AGAGCAGATTGAAG-A-A-TG
* *
11742974 AATCTTATC-TCTATGTA--TCGACAATGG-
60 AGTCTTATCTTCT-TG-AGGTAG-CAA-GGA
* * *
11743001 AGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAGCAAGAAAGCAGATTGAAGAATGAGTCT
1 AGCAGATTTAAGTCACAAGCCTTATCTCTCTAAGGTAG-AAGAGAGCAGATTGAAGAATGAGTCT
* *
11743066 TATCTTCCTAAGGTAGCAAGGA
65 TATCTTCTTGAGGTAGCAAGGA
11743088 AGCAGATT
1 AGCAGATT
11743096 GAGAATTGAA
Statistics
Matches: 137, Mismatches: 31, Indels: 34
0.68 0.15 0.17
Matches are distributed among these distances:
86 3 0.02
87 38 0.28
88 31 0.23
89 31 0.23
90 31 0.23
91 3 0.02
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (86 bp):
AGCAGATTTAAGTCACAAGCCTTATCTCTCTAAGGTAGAAGAGAGCAGATTGAAGAATGAGTCTT
ATCTTCTTGAGGTAGCAAGGA
Found at i:11743011 original size:177 final size:179
Alignment explanation
Indices: 11742618--11743247 Score: 660
Period size: 177 Copynumber: 3.5 Consensus size: 179
11742608 ATCAAAAATG
* * * * * *
11742618 GCGAATCTTATCTCCATGTATCAGTAATGGAGCAGATTTAAGCAACAAGCCTTATCTCCCTGAAG
1 GCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACAAGCCCTATCTCTCTGAGG
* * * * * ** * * * * *
11742683 TTGC-AGTGGAGCAGGCTCAATATACAAGTCTTATCTCCCTGAGGTTGCAGTGGAA-CAGACTGA
66 TAGCAAG-AGAGCAGGTTGAAGA-ATGAGTCTTATCTTCCTAAGGTAGCA-AGGAAGCAGATTGA
* * * *
11742746 -AAATCACAGA-TTTATCTCCCTAAGCAG-TAGC-GGAGCAGA-T---CGAAGATG
128 GAATTGA-AGATTTTATCTCCCTAA--AGTTA-CATGAGCAGAGTGGACGAAGATA
* * *
11742794 GCGAATATTATCTCCATGTATCGGCAATGGAGCAGATTTAAGTCACAAGCCCTATCTCTCTAAGG
1 GCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACAAGCCCTATCTCTCTGAGG
* * *
11742859 TAGTAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGATTGAGAA
66 TAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGATTGAGAA
* *
11742924 TTGAAGATTTTATCTCCCTAAAGTTGCAGTAGAGCAGA-TTGA-G-A-ATA
131 TTGAAGATTTTATCTCCCTAAAGTTACA-T-GAGCAGAGTGGACGAAGATA
* * * *
11742971 GTGAATCTTATCTCTATGTATCGACAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGG
1 GCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACAAGCCCTATCTCTCTGAGG
* *
11743036 TAGCAAGAAAGCAGATTGAAGAATGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGATTGAGAA
66 TAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGATTGAGAA
* *
11743101 TTGAAGATTTTATCTCCCTAAAGTTACATTAGCAGAGTGGATCGAAGATG
131 TTGAAGATTTTATCTCCCTAAAGTTACATGAGCAGAGTGGA-CGAAGATA
* * *
11743151 GCGAATCTTCTCTCCACGTATCGGCAATGGAGCAGATTTTAGCCACTAA-CCCTATCTCTCTGAG
1 GCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCAC-AAGCCCTATCTCTCTGAG
* * *
11743215 GTAGCAAAAGAGCAAGTTGAAGATTGAGTCTTA
65 GTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTA
11743248 GCTGCAGTAA
Statistics
Matches: 382, Mismatches: 55, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
174 7 0.02
175 38 0.10
176 90 0.24
177 157 0.41
178 2 0.01
179 2 0.01
180 84 0.22
181 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (179 bp):
GCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACAAGCCCTATCTCTCTGAGG
TAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGATTGAGAA
TTGAAGATTTTATCTCCCTAAAGTTACATGAGCAGAGTGGACGAAGATA
Found at i:11743080 original size:43 final size:42
Alignment explanation
Indices: 11742853--11743101 Score: 123
Period size: 43 Copynumber: 5.7 Consensus size: 42
11742843 CCCTATCTCT
* * *
11742853 CTAAGGTAGTAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTC
1 CTAAGGTAGCAAGAAAGCAGATTG-AGAATGAGTCTTATCTTC
* * * * *
11742896 TTGAGGTAGCAAGGAAGCAGATTGAGAATTGAAGATTTTATCTCC
1 CTAAGGTAGCAAGAAAGCAGATTGAGAA-TG-AG-TCTTATCTTC
* * * *
11742941 CTAAAGTTGC-AGTAGAGCAGATTGAGAATAGTGAATCTTATC-T-
1 CTAAGGTAGCAAG-AAAGCAGATTGAG-A-A-TGAGTCTTATCTTC
* * * * ** *
11742984 CT-ATGTATCGACAATG-GAGCAGATTTAAGCCACAAGCCTTATC-TC
1 CTAAGGTA--G-CAA-GAAAGCAGA-TTGAG-AATGAGTCTTATCTTC
*
11743029 TCTGAGGTAGCAAGAAAGCAGATTGAAGAATGAGTCTTATCTTC
1 -CTAAGGTAGCAAGAAAGCAGATTG-AGAATGAGTCTTATCTTC
*
11743073 CTAAGGTAGCAAGGAAGCAGATTGAGAAT
1 CTAAGGTAGCAAGAAAGCAGATTGAGAAT
11743102 TGAAGATTTT
Statistics
Matches: 152, Mismatches: 36, Indels: 37
0.68 0.16 0.16
Matches are distributed among these distances:
42 12 0.08
43 56 0.37
44 26 0.17
45 41 0.27
46 9 0.06
47 8 0.05
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (42 bp):
CTAAGGTAGCAAGAAAGCAGATTGAGAATGAGTCTTATCTTC
Found at i:11748280 original size:5 final size:6
Alignment explanation
Indices: 11748258--11748287 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
11748248 ATATATAACC
*
11748258 ATTTAT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
11748288 TCTCTCTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:11748671 original size:22 final size:22
Alignment explanation
Indices: 11748646--11748687 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
11748636 TTCGGTGTGG
11748646 TTTTGTAACCACACGGGTGCAT
1 TTTTGTAACCACACGGGTGCAT
11748668 TTTTGTAACCACACGGGTGC
1 TTTTGTAACCACACGGGTGC
11748688 GTGTGCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (22 bp):
TTTTGTAACCACACGGGTGCAT
Found at i:11751005 original size:30 final size:29
Alignment explanation
Indices: 11750969--11751052 Score: 91
Period size: 28 Copynumber: 2.9 Consensus size: 29
11750959 TCATAAGTCT
11750969 TCTAATTATTGTCTCTTTTTATTTTTATCA
1 TCTAATTATTGT-TCTTTTTATTTTTATCA
** * *
11750999 TCTAATTATTAAT-TTTTTAATTGT-TCA
1 TCTAATTATTGTTCTTTTTATTTTTATCA
* *
11751026 CCTAATTATTGTTCCTTTTATTTTTAT
1 TCTAATTATTGTTCTTTTTATTTTTAT
11751053 TACCTAACTA
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
27 13 0.31
28 17 0.40
29 2 0.05
30 10 0.24
ACGTcount: A:0.23, C:0.12, G:0.04, T:0.62
Consensus pattern (29 bp):
TCTAATTATTGTTCTTTTTATTTTTATCA
Found at i:11751073 original size:29 final size:29
Alignment explanation
Indices: 11750984--11751078 Score: 88
Period size: 28 Copynumber: 3.3 Consensus size: 29
11750974 TTATTGTCTC
*
11750984 TTTTTATTTTTATCATCTAATTATTAA-T
1 TTTTTATTTTTATCACCTAATTATTAATT
* * *
11751012 TTTTTAATTGT-TCACCTAATTATT-GTT
1 TTTTTATTTTTATCACCTAATTATTAATT
* * *
11751039 CCTTTTATTTTTATTACCTAACTATTAATTT
1 -TTTTTATTTTTATCACCTAATTATTAA-TT
11751070 TTTTTATTT
1 TTTTTATTT
11751079 GGTCACCCAA
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
27 13 0.25
28 17 0.33
29 11 0.22
30 8 0.16
31 2 0.04
ACGTcount: A:0.24, C:0.11, G:0.02, T:0.63
Consensus pattern (29 bp):
TTTTTATTTTTATCACCTAATTATTAATT
Found at i:11752971 original size:29 final size:28
Alignment explanation
Indices: 11752905--11752971 Score: 64
Period size: 29 Copynumber: 2.4 Consensus size: 28
11752895 TTTAAATTTT
**
11752905 AAAAA-ATTTTAAAAATTAAAAAGTATT
1 AAAAATATTTTAAAAATTAAAAAGTACA
* * * *
11752932 AAAATTGTTTTAAAAGTATAAAAATTACA
1 AAAAATATTTTAAAAAT-TAAAAAGTACA
11752961 AAAAATATTTT
1 AAAAATATTTT
11752972 TAATTTTTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
27 4 0.13
28 9 0.30
29 17 0.57
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.36
Consensus pattern (28 bp):
AAAAATATTTTAAAAATTAAAAAGTACA
Found at i:11754272 original size:30 final size:31
Alignment explanation
Indices: 11754238--11754299 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
11754228 TTATTTTATC
11754238 GTTAA-TTTTCTTATTATTTTAAAAGCATTT
1 GTTAATTTTTCTTATTATTTTAAAAGCATTT
* *
11754268 GTTAATTTTTTTTATTATTTTAGAAGCATTT
1 GTTAATTTTTCTTATTATTTTAAAAGCATTT
11754299 G
1 G
11754300 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 5 0.17
31 24 0.83
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.58
Consensus pattern (31 bp):
GTTAATTTTTCTTATTATTTTAAAAGCATTT
Found at i:11760039 original size:20 final size:20
Alignment explanation
Indices: 11760014--11760053 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
11760004 CATCCCAAGT
11760014 AAGTTTCTAATCATCATGCA
1 AAGTTTCTAATCATCATGCA
11760034 AAGTTTCTAATCATCATGCA
1 AAGTTTCTAATCATCATGCA
11760054 TCAACTACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (20 bp):
AAGTTTCTAATCATCATGCA
Found at i:11765061 original size:20 final size:21
Alignment explanation
Indices: 11765024--11765063 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
11765014 TCTCTCCTGC
11765024 ATTTACACTAAAAGAAAATAA
1 ATTTACACTAAAAGAAAATAA
* *
11765045 ATTTAC-CTAATATAAAATA
1 ATTTACACTAAAAGAAAATA
11765064 GTTGAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.30
Consensus pattern (21 bp):
ATTTACACTAAAAGAAAATAA
Found at i:11766965 original size:13 final size:13
Alignment explanation
Indices: 11766944--11766978 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
11766934 AAAATTTTTC
*
11766944 AAAGCACTTCTCA
1 AAAGTACTTCTCA
11766957 AAAGTACTTCTCA
1 AAAGTACTTCTCA
*
11766970 AAAATACTT
1 AAAGTACTT
11766979 TTCCATAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.29
Consensus pattern (13 bp):
AAAGTACTTCTCA
Found at i:11767004 original size:13 final size:13
Alignment explanation
Indices: 11766988--11767012 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11766978 TTTCCATAAC
11766988 ACTTTTTAAAAGT
1 ACTTTTTAAAAGT
11767001 ACTTTTTAAAAG
1 ACTTTTTAAAAG
11767013 CAATGAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (13 bp):
ACTTTTTAAAAGT
Found at i:11770527 original size:16 final size:15
Alignment explanation
Indices: 11770496--11770526 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11770486 TAATTTCCTA
11770496 TATTTTTTAAAATTT
1 TATTTTTTAAAATTT
*
11770511 TATTTTTTATAATTT
1 TATTTTTTAAAATTT
11770526 T
1 T
11770527 TTAAAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTTTTAAAATTT
Found at i:11771033 original size:17 final size:17
Alignment explanation
Indices: 11771007--11771041 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
11770997 GCGTTTGAGA
*
11771007 TAGACGTTGTTATAGTT
1 TAGACATTGTTATAGTT
11771024 TAGACATTGTTATAGTT
1 TAGACATTGTTATAGTT
11771041 T
1 T
11771042 TAAGGTATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.20, T:0.49
Consensus pattern (17 bp):
TAGACATTGTTATAGTT
Found at i:11773543 original size:40 final size:40
Alignment explanation
Indices: 11773498--11773573 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
11773488 CACCATGTGA
* *
11773498 GGATAAAATTGACCCACCCAGCCCTACACACTAAGTATGT
1 GGATAAAATCGACCCACCCAGCCCTACACACCAAGTATGT
*
11773538 GGATAAAATCGACCCATCCAGCCCTACACACCAAGT
1 GGATAAAATCGACCCACCCAGCCCTACACACCAAGT
11773574 GGTACTGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.36, C:0.33, G:0.14, T:0.17
Consensus pattern (40 bp):
GGATAAAATCGACCCACCCAGCCCTACACACCAAGTATGT
Found at i:11777886 original size:14 final size:14
Alignment explanation
Indices: 11777869--11777907 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
11777859 TTAGATTAAA
11777869 AAATTGAGAATAAC
1 AAATTGAGAATAAC
* *
11777883 AAATCGAGAATAAG
1 AAATTGAGAATAAC
11777897 AAATTGAGAAT
1 AAATTGAGAAT
11777908 CAAATTATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.56, C:0.05, G:0.18, T:0.21
Consensus pattern (14 bp):
AAATTGAGAATAAC
Found at i:11779252 original size:15 final size:17
Alignment explanation
Indices: 11779217--11779253 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
11779207 AAATTTTTTT
*
11779217 TATTTATTTTCTTTAAA
1 TATTTATTATCTTTAAA
11779234 TATTTATTAT-TTT-AA
1 TATTTATTATCTTTAAA
11779249 TATTT
1 TATTT
11779254 TACTATGCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 7 0.37
16 3 0.16
17 9 0.47
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTTATTATCTTTAAA
Found at i:11779255 original size:24 final size:23
Alignment explanation
Indices: 11779202--11779255 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
11779192 TTCACAAGTA
* * *
11779202 ATTTTAAATTTTTTTTATTTATT
1 ATTTTAAATATTTATTATTTAAT
*
11779225 TTCTTTAAATATTTATTATTTTAAT
1 AT-TTTAAATATTTATTA-TTTAAT
11779250 ATTTTA
1 ATTTTA
11779256 CTATGCCTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
23 1 0.04
24 17 0.71
25 6 0.25
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (23 bp):
ATTTTAAATATTTATTATTTAAT
Found at i:11779998 original size:21 final size:20
Alignment explanation
Indices: 11779968--11780007 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
11779958 TTTGAGATTG
11779968 AAGGTTTGGG-TTTAGGGTTT
1 AAGGTTTGGGATTT-GGGTTT
11779988 AAGGTTTTGGGATTTGGGTT
1 AAGG-TTTGGGATTTGGGTT
11780008 CGAGATTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 11 0.61
22 3 0.17
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (20 bp):
AAGGTTTGGGATTTGGGTTT
Found at i:11780020 original size:7 final size:7
Alignment explanation
Indices: 11780010--11780035 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
11780000 TTTGGGTTCG
11780010 AGATTCA
1 AGATTCA
11780017 AGATTCA
1 AGATTCA
11780024 AGATTCA
1 AGATTCA
11780031 AGATT
1 AGATT
11780036 TAGAGCTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (7 bp):
AGATTCA
Found at i:11784307 original size:42 final size:43
Alignment explanation
Indices: 11784191--11784285 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 43
11784181 TATGTGTTTT
* * * *
11784191 TGTGTAAGACCACA-TATGGGACGTTGGCATCG-ACTTCTGTTTTA
1 TGTGTAAGACCA-AGTCTGGGACATCGGCATCGTA--TCTGATTTA
11784235 TGTGTAAGACCAAGTCTGGGACATCGGCATCGTATCTGATTT-
1 TGTGTAAGACCAAGTCTGGGACATCGGCATCGTATCTGATTTA
11784277 TGTGTAAGA
1 TGTGTAAGA
11784286 TCCTGTCTGG
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
42 9 0.20
43 8 0.18
44 27 0.60
45 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTGTAAGACCAAGTCTGGGACATCGGCATCGTATCTGATTTA
Found at i:11790502 original size:46 final size:46
Alignment explanation
Indices: 11790426--11790586 Score: 162
Period size: 48 Copynumber: 3.4 Consensus size: 46
11790416 AGCAATATCG
* * *
11790426 ATCTCGCACACTATGTGCCAATGTATATATATAGCCGAAGCTATCTCA
1 ATCTCACACACTAAGTGCCAA--TATATATATAGCCGAAGCTATTTCA
*
11790474 AT-TACACACACTAAGTGCCAATATATATATATAACCGAAGCTATTTCA
1 ATCT-CACACACTAAGTGCC-A-ATATATATATAGCCGAAGCTATTTCA
* * * * * *
11790522 GTCTCGCACACTAAGTGCCAATACATATGTAGTCGAAACTATTTCTA
1 ATCTCACACACTAAGTGCCAATATATATATAGCCGAAGCTATTTC-A
*
11790569 ATCTCACACACCAAGTGC
1 ATCTCACACACTAAGTGC
11790587 ACATAATTAG
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
46 20 0.21
47 18 0.19
48 53 0.56
49 2 0.02
50 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (46 bp):
ATCTCACACACTAAGTGCCAATATATATATAGCCGAAGCTATTTCA
Found at i:11805689 original size:223 final size:223
Alignment explanation
Indices: 11805301--11805750 Score: 864
Period size: 223 Copynumber: 2.0 Consensus size: 223
11805291 AGGTAGGGGT
*
11805301 AGAGGTTGTTGAGCAATCGAATTTGTCAAGACATACTACGTGAATCATTCGTTCATCATTTGGAA
1 AGAGGTTGTTGAGCAACCGAATTTGTCAAGACATACTACGTGAATCATTCGTTCATCATTTGGAA
11805366 GAAGGCTTCGTTAGCCTCTCCTCCCTGGCTACCCGATACGAGTCTAGATTTAGAAGGCACTGTCT
66 GAAGGCTTCGTTAGCCTCTCCTCCCTGGCTACCCGATACGAGTCTAGATTTAGAAGGCACTGTCT
*
11805431 CTTGAGTGGGAGCTGGCACATTACTTTCAACCTCATCAACTACAACTCGATTGGGATCTATTTAC
131 CTTGACTGGGAGCTGGCACATTACTTTCAACCTCATCAACTACAACTCGATTGGGATCTATTTAC
11805496 TATATGAAAACACATTTTAAAAATATTA
196 TATATGAAAACACATTTTAAAAATATTA
*
11805524 AGAGGTTGTTGAGCAGCCGAATTTGTCAAGACATACTACGTGAATCATTCGTTCATCATTTGGAA
1 AGAGGTTGTTGAGCAACCGAATTTGTCAAGACATACTACGTGAATCATTCGTTCATCATTTGGAA
*
11805589 GAAGGCTTCGTTAGCCTCTCCTCCCTGGCTACCTGATACGAGTCTAGATTTAGAAGGCACTGTCT
66 GAAGGCTTCGTTAGCCTCTCCTCCCTGGCTACCCGATACGAGTCTAGATTTAGAAGGCACTGTCT
11805654 CTTGACTGGGAGCTGGCACATTACTTTCAACCTCATCAACTACAACTCGATTGGGATCTATTTAC
131 CTTGACTGGGAGCTGGCACATTACTTTCAACCTCATCAACTACAACTCGATTGGGATCTATTTAC
11805719 TATATGAAAACACATTTTAAAAATATTA
196 TATATGAAAACACATTTTAAAAATATTA
11805747 AGAG
1 AGAG
11805751 TCATCACACT
Statistics
Matches: 223, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
223 223 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (223 bp):
AGAGGTTGTTGAGCAACCGAATTTGTCAAGACATACTACGTGAATCATTCGTTCATCATTTGGAA
GAAGGCTTCGTTAGCCTCTCCTCCCTGGCTACCCGATACGAGTCTAGATTTAGAAGGCACTGTCT
CTTGACTGGGAGCTGGCACATTACTTTCAACCTCATCAACTACAACTCGATTGGGATCTATTTAC
TATATGAAAACACATTTTAAAAATATTA
Found at i:11819041 original size:15 final size:17
Alignment explanation
Indices: 11819017--11819050 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
11819007 GCTAGGGACT
11819017 AAATTGAAAAG-TGATA
1 AAATTGAAAAGATGATA
11819033 AAATT-AAAAGATGATA
1 AAATTGAAAAGATGATA
11819049 AA
1 AA
11819051 TAATTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.24
Consensus pattern (17 bp):
AAATTGAAAAGATGATA
Found at i:11831660 original size:31 final size:31
Alignment explanation
Indices: 11831601--11831660 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
11831591 TTTTTTTTTT
* * * *
11831601 GTTAAATTTTACCATTAATATTTTAAAAAGA
1 GTTAAATTTGACAATTAACATTTCAAAAAGA
*
11831632 GTTAAATTTGACAATTAACCTTTCAAAAA
1 GTTAAATTTGACAATTAACATTTCAAAAA
11831661 CAATCAAATC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (31 bp):
GTTAAATTTGACAATTAACATTTCAAAAAGA
Found at i:11831806 original size:17 final size:16
Alignment explanation
Indices: 11831774--11831822 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
11831764 AAAATTTATG
* *
11831774 AATTTATGAATTTTTT
1 AATTTTTGAATATTTT
*
11831790 ATTTTTTTGAATATTTT
1 A-ATTTTTGAATATTTT
11831807 AATTTTTGAATTATTT
1 AATTTTTGAA-TATTT
11831823 ATTGACATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 9 0.33
17 18 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
AATTTTTGAATATTTT
Found at i:11834835 original size:15 final size:17
Alignment explanation
Indices: 11834815--11834852 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
11834805 ATAACTATGT
11834815 GCTTGAAAA-TGGA-AG
1 GCTTGAAAACTGGAGAG
11834830 GCTTGAAAACTGGAGAG
1 GCTTGAAAACTGGAGAG
11834847 G-TTGAA
1 GCTTGAA
11834853 TGGTTATGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 9 0.43
17 3 0.14
ACGTcount: A:0.37, C:0.08, G:0.34, T:0.21
Consensus pattern (17 bp):
GCTTGAAAACTGGAGAG
Found at i:11843757 original size:38 final size:38
Alignment explanation
Indices: 11843675--11843795 Score: 125
Period size: 38 Copynumber: 3.1 Consensus size: 38
11843665 AAACCCGAAC
* * * **
11843675 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTTAGAT
1 ATAATACCAGCACGAAGCCTGC-GGAATTT-AACCCAGAT
* * * * *
11843715 ATAATACCAGCACTAGGCCTGTGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGAATTTAACCCAGAT
*
11843753 ATAATACCAGCACGAAGCCTGCGGAATTTAACCCAAAT
1 ATAATACCAGCACGAAGCCTGCGGAATTTAACCCAGAT
11843791 ATAAT
1 ATAAT
11843796 TCTAGCATAT
Statistics
Matches: 65, Mismatches: 16, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
38 43 0.66
39 5 0.08
40 17 0.26
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGAATTTAACCCAGAT
Found at i:11845526 original size:448 final size:448
Alignment explanation
Indices: 11844684--11845588 Score: 1693
Period size: 448 Copynumber: 2.0 Consensus size: 448
11844674 TTTTTGTCAA
11844684 TGTTTACCACATAATCATAATTCCACTGCAAGCTGTCTTCCTGAGCAACAGTCACTAAATCATTT
1 TGTTTA-CACATAATCATAATTCCACTGCAAGCTGTCTTCCTGAGCAACAGTCACTAAATCATTT
* *
11844749 ATAATTGGAGCTACGAAACTCCAAATCAAGTGCTGTTAATTTTCTCTGAAAATAGACTCATATAT
65 ATAACTGGAGCTACGAAACTCCAAATCAAGTGCCGTTAATTTTCTCTGAAAATAGACTCATATAT
*
11844814 CTTTTATCCATAAAATTTTAAGAATTTTTGGTTTGGCCAAACAATACCATATTTTTCTTAAAGTT
130 ATTTTATCCATAAAATTTTAAGAATTTTTGGTTTGGCCAAACAATACCATATTTTTCTTAAAGTT
11844879 TCCCTTGTTTCACTGTTTGACTAATCTGACCACTCTTCACTATGAATCAAATTTCTCATTGTACA
195 TCCCTTGTTTCACTGTTTGACTAATCTGACCACTCTTCACTATGAATCAAATTTCTCATTGTACA
*
11844944 GAATTCAAAATATGTTCTCGTTTATTTCATTTGAAACTAAACTCATTAAGGAGTCTAAGAATATA
260 GAATTCAAAATATGTTCTCATTTATTTCATTTGAAACTAAACTCATTAAGGAGTCTAAGAATATA
11845009 AATGTCATCTTAGGACCATTTTTGTACAATTTATAATGATTTTATAAAAACAGAATAGAGGATCT
325 AATGTCATCTTAGGACCATTTTTGTACAATTTATAATGATTTTATAAAAACAGAATAGAGGATCT
11845074 AGAAGTCATTCTGACCATGTCCCACATCACTTCAAATATCTCATTATCGGAAATTCTTT
390 AGAAGTCATTCTGACCATGTCCCACATCACTTCAAATATCTCATTATCGGAAATTCTTT
*
11845133 TGTTTACACATAATCATAATTCCACTGCAAGCTGTCTTCCTGAGCAATAGTCACTAAATCATTTA
1 TGTTTACACATAATCATAATTCCACTGCAAGCTGTCTTCCTGAGCAACAGTCACTAAATCATTTA
*
11845198 TAACTGGAGTTACGAAACTCCAAATCAAGTGCCGTTAATTTTCTCTGAAAATAGACTCATATATA
66 TAACTGGAGCTACGAAACTCCAAATCAAGTGCCGTTAATTTTCTCTGAAAATAGACTCATATATA
* * *
11845263 TTTTATCCATAAAATTTTCATAATTTTTGGTTTGGTCAAACAATACCATATTTTTCTTAAAGTTT
131 TTTTATCCATAAAATTTTAAGAATTTTTGGTTTGGCCAAACAATACCATATTTTTCTTAAAGTTT
11845328 CCCTTGTTTCACTGTTTGACTAATCTGACCACTCTTCACTATGAATCAAATTTCTCATTGTACAG
196 CCCTTGTTTCACTGTTTGACTAATCTGACCACTCTTCACTATGAATCAAATTTCTCATTGTACAG
11845393 AATTCAAAATATGTTCTCATTTATTTCATTTGAAACTAAACTCATTAAGGAGTCTAAGAATATAA
261 AATTCAAAATATGTTCTCATTTATTTCATTTGAAACTAAACTCATTAAGGAGTCTAAGAATATAA
* *
11845458 ATTTCATCTTAGGACCATTTTTGTACAATTTATAATGATTTTATAAATACAGAATAGAGGATCTA
326 ATGTCATCTTAGGACCATTTTTGTACAATTTATAATGATTTTATAAAAACAGAATAGAGGATCTA
*
11845523 GAAGTCATTCTGACCCTGTCCCACATCACTTCAAATATCTCATTATCGGAAATTCTTT
391 GAAGTCATTCTGACCATGTCCCACATCACTTCAAATATCTCATTATCGGAAATTCTTT
11845581 TGTTTACA
1 TGTTTACA
11845589 TAGTTTATTT
Statistics
Matches: 444, Mismatches: 12, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
448 438 0.99
449 6 0.01
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (448 bp):
TGTTTACACATAATCATAATTCCACTGCAAGCTGTCTTCCTGAGCAACAGTCACTAAATCATTTA
TAACTGGAGCTACGAAACTCCAAATCAAGTGCCGTTAATTTTCTCTGAAAATAGACTCATATATA
TTTTATCCATAAAATTTTAAGAATTTTTGGTTTGGCCAAACAATACCATATTTTTCTTAAAGTTT
CCCTTGTTTCACTGTTTGACTAATCTGACCACTCTTCACTATGAATCAAATTTCTCATTGTACAG
AATTCAAAATATGTTCTCATTTATTTCATTTGAAACTAAACTCATTAAGGAGTCTAAGAATATAA
ATGTCATCTTAGGACCATTTTTGTACAATTTATAATGATTTTATAAAAACAGAATAGAGGATCTA
GAAGTCATTCTGACCATGTCCCACATCACTTCAAATATCTCATTATCGGAAATTCTTT
Found at i:11847911 original size:29 final size:29
Alignment explanation
Indices: 11847874--11847976 Score: 97
Period size: 29 Copynumber: 3.6 Consensus size: 29
11847864 GGTTGAAGAA
*
11847874 CTCGTACACACAGTGCCTTAATTACCGAT
1 CTCGCACACACAGTGCCTTAATTACCGAT
* *
11847903 CTCGCACACATAGTGCTCGGTTAA--A-GGAAT
1 CTCGCACACACAGTGC-C--TTAATTACCG-AT
*
11847933 -TCGCACACACAGTGCCTCAATTACCGAT
1 CTCGCACACACAGTGCCTTAATTACCGAT
*
11847961 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
11847977 TTGGTTAAAG
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
26 3 0.05
28 4 0.07
29 44 0.75
30 4 0.07
32 4 0.07
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTTAATTACCGAT
Found at i:11847960 original size:58 final size:58
Alignment explanation
Indices: 11847840--11848008 Score: 261
Period size: 58 Copynumber: 2.9 Consensus size: 58
11847830 GTGCCCACTG
* * * *
11847840 ACCGATC-CTGCACACATAGTGCTCGGTTGAA-GAACTCGTACACACAGTGCCTTAATT
1 ACCGATCTC-GCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
11847897 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* *
11847955 ACCGATCTCGCACACATAGTGCTTGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
11848009 TAATCATTCG
Statistics
Matches: 104, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
57 28 0.27
58 76 0.73
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:11847996 original size:29 final size:29
Alignment explanation
Indices: 11847904--11848005 Score: 100
Period size: 29 Copynumber: 3.5 Consensus size: 29
11847894 ATTACCGATC
*
11847904 TCGCACACATAGTGCTCGGTTAAAGGAAT
1 TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
11847933 TCGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
* *
11847961 CTCGCACACATAGTGCTTGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
*
11847991 TTGCACACACAGTGC
1 TCGCACACACAGTGC
11848006 CTCTAATCAT
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
28 6 0.11
29 43 0.77
30 7 0.12
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAAAGGAAT
Found at i:11848223 original size:43 final size:43
Alignment explanation
Indices: 11848162--11848254 Score: 150
Period size: 43 Copynumber: 2.2 Consensus size: 43
11848152 CCTTGCTCGA
**
11848162 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAC
* *
11848205 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCTCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAC
11848248 ATCACCG
1 ATCACCG
11848255 AGTTTCATGC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAC
Found at i:11850567 original size:50 final size:49
Alignment explanation
Indices: 11850459--11850775 Score: 252
Period size: 50 Copynumber: 6.6 Consensus size: 49
11850449 GTATAATGCT
* * ** *
11850459 GATGCTATGTCCCAGACATGGTCTTATACTGGT-TCATC-TATCAAGT--C
1 GATGCCATGTCCCAGACATGGTCTTACACTACTCTCA-CATATC-TGTACC
*
11850506 GATGCCATGTCCTAGACATGGTCTTACACTGACTCTCACATATCTGTACC
1 GATGCCATGTCCCAGACATGGTCTTACACT-ACTCTCACATATCTGTACC
* *
11850556 GATGCCATGTCCCATACATGGTCTTACACTGACTCTCACATATCTGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-ACTCTCACATATCTGTACC
* * * * *
11850606 AATCCCATGTCCCAAACATGGTCTTACACTA---ACACAT-TTTGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTACTCTCACATATCTGTA-CC
* * * **
11850652 AATG-CATGTCCCCAGACAT-GTCTTACACTAGCTCT--CGTCTCAATACC
1 GATGCCATGT-CCCAGACATGGTCTTACACTA-CTCTCACATATCTGTACC
* * * *
11850699 GATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCATA-ATGTG-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTA-CTCTCACATATCTGTACC
11850747 GATG-CATGTCCCAGACAT-GTCTTACACTA
1 GATGCCATGTCCCAGACATGGTCTTACACTA
11850776 GCACACAATT
Statistics
Matches: 222, Mismatches: 32, Indels: 33
0.77 0.11 0.11
Matches are distributed among these distances:
45 20 0.09
46 29 0.13
47 55 0.25
48 34 0.15
49 9 0.04
50 75 0.34
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTACTCTCACATATCTGTACC
Found at i:11850687 original size:95 final size:93
Alignment explanation
Indices: 11850510--11850777 Score: 227
Period size: 95 Copynumber: 2.8 Consensus size: 93
11850500 CAAGTCGATG
* * * * * *
11850510 CCATGTCCTAGACATGGTCTTACACTGACTCTCACATATCTGTA-CCGATGCCATGTCCCATACA
1 CCATGTCCCAAACATGGTCTTACACT-A--CACACATA-ATGTAGCCAATG-CATGTCCCAGACA
** *
11850574 TGGTCTTACACT-GACTCTCACATATCTGTGCCAATC
61 T-GTCTTACACTAG-CTCT--CATATCAATACCAATC
**
11850610 CCATGTCCCAAACATGGTCTTACACTA-ACACATTTTGTAGCCAATGCATGTCCCCAGACATGTC
1 CCATGTCCCAAACATGGTCTTACACTACACACATAATGTAGCCAATGCATGT-CCCAGACATGTC
* * * *
11850674 TTACACTAGCTCTCGTCTCAATACCGATG
65 TTACACTAGCTCTCATATCAATACCAATC
* * * * * *
11850703 CCATGTCCCAGATATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTC
1 CCATGTCCCAAACATGGTCTTACACTA-CACACATAATGTAGCCAATGCATGTCCCAGACATGTC
11850768 TTACACTAGC
65 TTACACTAGC
11850778 ACACAATTAA
Statistics
Matches: 141, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
93 34 0.24
94 22 0.16
95 41 0.29
96 19 0.13
99 1 0.01
100 24 0.17
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (93 bp):
CCATGTCCCAAACATGGTCTTACACTACACACATAATGTAGCCAATGCATGTCCCAGACATGTCT
TACACTAGCTCTCATATCAATACCAATC
Found at i:11857025 original size:46 final size:46
Alignment explanation
Indices: 11856958--11857050 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
11856948 GCTACAAACA
11856958 AATCATGTTATGGTAAGAATGTAATGTATATGGAGTTTTAGATTTT
1 AATCATGTTATGGTAAGAATGTAATGTATATGGAGTTTTAGATTTT
11857004 AATCATGTTATGGTAAGAATGTAATGTATATGGAGTTTTAGATTTT
1 AATCATGTTATGGTAAGAATGTAATGTATATGGAGTTTTAGATTTT
11857050 A
1 A
11857051 TTTGAATAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (46 bp):
AATCATGTTATGGTAAGAATGTAATGTATATGGAGTTTTAGATTTT
Found at i:11860882 original size:20 final size:20
Alignment explanation
Indices: 11860845--11860893 Score: 80
Period size: 20 Copynumber: 2.4 Consensus size: 20
11860835 ATATAATAAT
11860845 AATTATATTATGATTTTATTA
1 AATTATA-TATGATTTTATTA
*
11860866 AATTATATATTATTTTATTA
1 AATTATATATGATTTTATTA
11860886 AATTATAT
1 AATTATAT
11860894 TTAATAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
AATTATATATGATTTTATTA
Found at i:11860971 original size:58 final size:57
Alignment explanation
Indices: 11860838--11860973 Score: 168
Period size: 57 Copynumber: 2.4 Consensus size: 57
11860828 TTAATTCATA
** * **
11860838 TAATAATAATTATATTATGATTTTATTAAATTATATATTATTTTATTAAATTATATT
1 TAATAATAATTATATTAAAATATGGTTAAATTATATATTATTTTATTAAATTATATT
* *
11860895 TAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATTTTTATTAAATTAT-TT
1 TAATAATAATTATATTAAAATATGGTTAAATTATATATTA-TTTTATTAAATTATATT
11860952 TCAATAATAA-TATTATTAAAAT
1 T-AATAATAATTA-TATTAAAAT
11860974 TTAATAACAA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
57 38 0.56
58 30 0.44
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (57 bp):
TAATAATAATTATATTAAAATATGGTTAAATTATATATTATTTTATTAAATTATATT
Found at i:11861162 original size:16 final size:16
Alignment explanation
Indices: 11861141--11861194 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
11861131 TGAATTACTG
11861141 ATTACATCTCTATTCC
1 ATTACATCTCTATTCC
** *
11861157 ATTACAGGTCTATTCA
1 ATTACATCTCTATTCC
*
11861173 ATTACAGTC-CTATTTC
1 ATTACA-TCTCTATTCC
11861189 ATTACA
1 ATTACA
11861195 GTGAACCAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.41
Consensus pattern (16 bp):
ATTACATCTCTATTCC
Found at i:11869712 original size:17 final size:16
Alignment explanation
Indices: 11869690--11869733 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
11869680 TCGGCAATAG
11869690 AAGAAGAAGAAAAGAGA
1 AAGAAGAAGAAAA-AGA
11869707 AAGAAG-AGAAAAAGA
1 AAGAAGAAGAAAAAGA
11869722 AA-AAGAA-AAAAA
1 AAGAAGAAGAAAAA
11869734 AAGACGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 8 0.31
15 6 0.23
16 6 0.23
17 6 0.23
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAGAAGAAGAAAAAGA
Found at i:11869736 original size:10 final size:11
Alignment explanation
Indices: 11869690--11869737 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
11869680 TCGGCAATAG
*
11869690 AAGAAGAAGAA
1 AAGAAAAAGAA
*
11869701 AAGAGAAAGAA
1 AAGAAAAAGAA
*
11869712 GAGAAAAAGAAA
1 AAGAAAAAG-AA
11869724 AAGAAAAA-AA
1 AAGAAAAAGAA
11869734 AAGA
1 AAGA
11869738 CGAGAATGAG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
10 6 0.19
11 16 0.52
12 9 0.29
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (11 bp):
AAGAAAAAGAA
Found at i:11869749 original size:27 final size:28
Alignment explanation
Indices: 11869690--11869756 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
11869680 TCGGCAATAG
*
11869690 AAGAAGAAGAAAAGAGAAAGAAGAGAAA
1 AAGAAGAAGAAAAGAAAAAGAAGAGAAA
* * *
11869718 AAGAAAAAGAAAA-AAAAAGACGAGAAT
1 AAGAAGAAGAAAAGAAAAAGAAGAGAAA
*
11869745 GAGAAGAAGAAA
1 AAGAAGAAGAAA
11869757 CCCTCGAAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 21 0.64
28 12 0.36
ACGTcount: A:0.72, C:0.01, G:0.25, T:0.01
Consensus pattern (28 bp):
AAGAAGAAGAAAAGAAAAAGAAGAGAAA
Found at i:11874550 original size:34 final size:34
Alignment explanation
Indices: 11874490--11874555 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
11874480 AATTTGAGCG
*
11874490 AAATATAGGGATCAAAATTGATATTTAACCATAT
1 AAATATAGGGATCAAAATTGAAATTTAACCATAT
* * *
11874524 AAAT-TAGAGGATTAAATTTGAAATTTAGCCAT
1 AAATATAG-GGATCAAAATTGAAATTTAACCAT
11874556 TATATTGTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 3 0.11
34 24 0.89
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (34 bp):
AAATATAGGGATCAAAATTGAAATTTAACCATAT
Found at i:11874802 original size:94 final size:96
Alignment explanation
Indices: 11874629--11874818 Score: 267
Period size: 94 Copynumber: 2.0 Consensus size: 96
11874619 AGCTATTGAT
* * * * * *
11874629 TTGAGCGAAATATAGAGATTAAAACTAAAATTTAGCTATAAAAAATTAGAGGTATTAGAATTGAA
1 TTGAGCGAAATATAGAGATCAAAACTAAAATTTAACCATAAAAAATTAAACGAATTAGAATTGAA
*
11874694 ATTTAGCCATTATCTTTTCATGT-AAAAAAA
66 ATTTAGCCATTATCTTGTCATGTCAAAAAAA
* * *
11874724 TTGAGGGAAATATAGGGATCAAAACTTAAATTTAACCAT-AAAAATTAAACGAATTAGAATTGAA
1 TTGAGCGAAATATAGAGATCAAAACTAAAATTTAACCATAAAAAATTAAACGAATTAGAATTGAA
*
11874788 TTTTAGCCATTATCTTGTCATGTCAAAAAAA
66 ATTTAGCCATTATCTTGTCATGTCAAAAAAA
11874819 ATAGACATGT
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
94 43 0.52
95 40 0.48
ACGTcount: A:0.46, C:0.09, G:0.14, T:0.32
Consensus pattern (96 bp):
TTGAGCGAAATATAGAGATCAAAACTAAAATTTAACCATAAAAAATTAAACGAATTAGAATTGAA
ATTTAGCCATTATCTTGTCATGTCAAAAAAA
Found at i:11875347 original size:17 final size:18
Alignment explanation
Indices: 11875325--11875362 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
11875315 GTAAATGATC
*
11875325 AACCCAA-ACTCATTTTA
1 AACCCAATACACATTTTA
*
11875342 AACCCAATCCACATTTTA
1 AACCCAATACACATTTTA
11875360 AAC
1 AAC
11875363 AAACCTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (18 bp):
AACCCAATACACATTTTA
Found at i:11886182 original size:36 final size:36
Alignment explanation
Indices: 11886135--11886203 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
11886125 AATAAATCAA
11886135 AACTTATGAAGATGAAGTTAGCAAGAAAAGAATGTG
1 AACTTATGAAGATGAAGTTAGCAAGAAAAGAATGTG
11886171 AACTTATGAAGATGAAGTTAGCAAGAAAAGAAT
1 AACTTATGAAGATGAAGTTAGCAAGAAAAGAAT
11886204 TCACATTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.49, C:0.06, G:0.23, T:0.22
Consensus pattern (36 bp):
AACTTATGAAGATGAAGTTAGCAAGAAAAGAATGTG
Done.