Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 42 of 311
Found at i:11888621 original size:22 final size:21
Alignment explanation
Indices: 11888593--11888634 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
11888583 TAATCTCCTA
11888593 TTTTTATTTTCAAGAATTTAAT
1 TTTTTATTTTCAA-AATTTAAT
*
11888615 TTTTTATTTTTAAAATTTAA
1 TTTTTATTTTCAAAATTTAA
11888635 AAATTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTTATTTTCAAAATTTAAT
Found at i:11890948 original size:37 final size:37
Alignment explanation
Indices: 11890898--11890968 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
11890888 CACTTTGATG
11890898 CAAGTAAAAGCTTGAGTTTGAATAAATAAGGAACCGA
1 CAAGTAAAAGCTTGAGTTTGAATAAATAAGGAACCGA
11890935 CAAGTAAAAGCTTGAGTTTGAATAAATAAGGAAC
1 CAAGTAAAAGCTTGAGTTTGAATAAATAAGGAAC
11890969 TGAAAGTTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.46, C:0.10, G:0.21, T:0.23
Consensus pattern (37 bp):
CAAGTAAAAGCTTGAGTTTGAATAAATAAGGAACCGA
Found at i:11891778 original size:16 final size:17
Alignment explanation
Indices: 11891719--11891777 Score: 66
Period size: 16 Copynumber: 3.4 Consensus size: 17
11891709 AATTGGGTTG
*
11891719 AGAAAATTATTTAATTG
1 AGAAAATTATTTAATTT
*
11891736 A-AAAATTAATTAATTT
1 AGAAAATTATTTAATTT
*
11891752 AGCAAATAATATTTAATTT
1 AG-AAA-ATTATTTAATTT
11891771 AGAAAAT
1 AGAAAAT
11891778 AGAAAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
16 14 0.41
17 2 0.06
18 6 0.18
19 12 0.35
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.39
Consensus pattern (17 bp):
AGAAAATTATTTAATTT
Found at i:11894371 original size:107 final size:106
Alignment explanation
Indices: 11894229--11894470 Score: 324
Period size: 107 Copynumber: 2.3 Consensus size: 106
11894219 CTATTGTCAA
* * *
11894229 TACTATATTAACTTTATTTAACTTATTTAACAGACACATACAAAAGATAACTTATATAATAAACC
1 TACTATATTGACTTTATTTAATTTATTTAACAGACACATACAAAAGACAACTTATATAATAAACC
* * *
11894294 CGAACAA-GAACAAAAAATAATGGGGGACAAATGCTTTGCCAG
66 C-AAAAACGAACAAAAAA-AAGGGGGGACAAATGCTATGCCAG
* * *
11894336 TACTGTATTGACTTTATTTAATTTGTTTAATAGACACATACAAAAGACAACTTATATAATAAACC
1 TACTATATTGACTTTATTTAATTTATTTAACAGACACATACAAAAGACAACTTATATAATAAACC
* * ** **
11894401 CAAAAACTAACAAAAAAAGGGGGGGGGAAATGCTATGTTAG
66 CAAAAACGAACAAAAAAAAGGGGGGACAAATGCTATGCCAG
11894442 TACTATATTGACTTTATTTAATTTATTTA
1 TACTATATTGACTTTATTTAATTTATTTA
11894471 CTTTTATATT
Statistics
Matches: 117, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
106 48 0.41
107 69 0.59
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.31
Consensus pattern (106 bp):
TACTATATTGACTTTATTTAATTTATTTAACAGACACATACAAAAGACAACTTATATAATAAACC
CAAAAACGAACAAAAAAAAGGGGGGACAAATGCTATGCCAG
Found at i:11898245 original size:2 final size:2
Alignment explanation
Indices: 11898238--11898262 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11898228 CTAAAATAGG
11898238 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
11898263 TTTTTGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11903537 original size:16 final size:16
Alignment explanation
Indices: 11903516--11903557 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
11903506 ATTGCGTTGA
*
11903516 GAAAATTATTTAATTG
1 GAAAATTAATTAATTG
11903532 GAAAATTAATTAATT-
1 GAAAATTAATTAATTG
11903547 --AAATTAATTAA
1 GAAAATTAATTAA
11903558 ATAAATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 11 0.44
16 14 0.56
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.40
Consensus pattern (16 bp):
GAAAATTAATTAATTG
Found at i:11903552 original size:13 final size:13
Alignment explanation
Indices: 11903534--11903563 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
11903524 TTTAATTGGA
*
11903534 AAATTAATTAATT
1 AAATTAATTAAAT
11903547 AAATTAATTAAAT
1 AAATTAATTAAAT
11903560 AAAT
1 AAAT
11903564 AATATTTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATTAATTAAAT
Found at i:11907675 original size:13 final size:13
Alignment explanation
Indices: 11907657--11907692 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
11907647 GCCATGTGAA
11907657 GGACACGGGCCAG
1 GGACACGGGCCAG
11907670 GGACACGGGCCAG
1 GGACACGGGCCAG
11907683 GGACACGGGC
1 GGACACGGGC
11907693 GTGTGCCAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.22, C:0.31, G:0.47, T:0.00
Consensus pattern (13 bp):
GGACACGGGCCAG
Found at i:11914686 original size:15 final size:16
Alignment explanation
Indices: 11914666--11914695 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
11914656 ATGGCCAAAT
11914666 CACATTA-AAACATAG
1 CACATTACAAACATAG
11914681 CACATTACAAACATA
1 CACATTACAAACATA
11914696 CACCAAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.23, G:0.03, T:0.20
Consensus pattern (16 bp):
CACATTACAAACATAG
Found at i:11926522 original size:25 final size:26
Alignment explanation
Indices: 11926485--11926539 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
11926475 ACAAATCAGG
*
11926485 GTATCACAGAGATTTTCATAACAAT-
1 GTATCACAAAGATTTTCATAACAATC
11926510 GTATCACAAAGATTTTCATAACAATC
1 GTATCACAAAGATTTTCATAACAATC
11926536 GTAT
1 GTAT
11926540 AACAGAACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 24 0.86
26 4 0.14
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (26 bp):
GTATCACAAAGATTTTCATAACAATC
Found at i:11935536 original size:16 final size:15
Alignment explanation
Indices: 11935514--11935552 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
11935504 AGCTACCATG
11935514 AAAAGAAAAATAGAA
1 AAAAGAAAAATAGAA
*
11935529 AGAAAGAAAAAATAGGA
1 A-AAAG-AAAAATAGAA
11935546 AAAAGAA
1 AAAAGAA
11935553 TAATCCGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 3 0.14
16 8 0.38
17 10 0.48
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (15 bp):
AAAAGAAAAATAGAA
Found at i:11935539 original size:17 final size:16
Alignment explanation
Indices: 11935514--11935552 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
11935504 AGCTACCATG
11935514 AAAAG-AAAAATAGAA
1 AAAAGAAAAAATAGAA
*
11935529 AGAAAGAAAAAATAGGA
1 A-AAAGAAAAAATAGAA
11935546 AAAAGAA
1 AAAAGAA
11935553 TAATCCGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 10 0.48
17 10 0.48
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (16 bp):
AAAAGAAAAAATAGAA
Found at i:11939021 original size:42 final size:42
Alignment explanation
Indices: 11938960--11939069 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 42
11938950 GTGTTTCAAG
* *
11938960 TCAGTGAGTTACACAGCCTGGCACACCGCCGTGTGTGGTAAC
1 TCAGTGAGTTACACGGCCTGGCACACCGCCGTGTGTGGCAAC
* * **
11939002 TTAGTGAGCTACACGGCCTGGCACATGGCCGTGTGTGGCAAC
1 TCAGTGAGTTACACGGCCTGGCACACCGCCGTGTGTGGCAAC
* * *
11939044 TCAATGAGTTACATGGCCTAGCACAC
1 TCAGTGAGTTACACGGCCTGGCACAC
11939070 GGTCTGGCAC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (42 bp):
TCAGTGAGTTACACGGCCTGGCACACCGCCGTGTGTGGCAAC
Found at i:11941715 original size:19 final size:19
Alignment explanation
Indices: 11941688--11941724 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11941678 GAGCTGCCAT
11941688 GAAAAAAAAAACAAAGAAA
1 GAAAAAAAAAACAAAGAAA
* *
11941707 GAAATAAAAGACAAAGAA
1 GAAAAAAAAAACAAAGAA
11941725 TAGCCTGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.78, C:0.05, G:0.14, T:0.03
Consensus pattern (19 bp):
GAAAAAAAAAACAAAGAAA
Found at i:11949855 original size:131 final size:131
Alignment explanation
Indices: 11949621--11949866 Score: 323
Period size: 131 Copynumber: 1.9 Consensus size: 131
11949611 TATCGATTAC
* * * * ** **
11949621 TTTAATATCATGAACACCTTTATTTGAGTTAACTGATTTAAGATCGCTACTCCACATAGTTTGCT
1 TTTAAGATCATGAACACCTTTATTTGAGTTAACTGATTTAAGATCACTACTCCAAACAACTCACT
* **
11949686 GATTTAAGCTCGCAGTTGATATCATTAAAGTTCACTGATTTAAGATCACAACCTAAGTTCATTTG
66 GATTTAAGATCGCAACTGATATCATTAAAGTTCACTGATTTAAGATCACAACCTAAGTTCATTTG
11949751 A
131 A
* ** *
11949752 TTTAAGATCATGAACA-ATCTTATTTGAGTTAGTTGATTTAAGATCACTACTCCAAACAACTCAT
1 TTTAAGATCATGAACACCT-TTATTTGAGTTAACTGATTTAAGATCACTACTCCAAACAACTCAC
* *
11949816 TGATTTAAGATCGCAACTGATATCATTAAGGTTCACTGATTTAATATCACA
65 TGATTTAAGATCGCAACTGATATCATTAAAGTTCACTGATTTAAGATCACA
11949867 GTTGATACCA
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
130 1 0.01
131 96 0.99
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (131 bp):
TTTAAGATCATGAACACCTTTATTTGAGTTAACTGATTTAAGATCACTACTCCAAACAACTCACT
GATTTAAGATCGCAACTGATATCATTAAAGTTCACTGATTTAAGATCACAACCTAAGTTCATTTG
A
Found at i:11949873 original size:36 final size:36
Alignment explanation
Indices: 11949833--11949902 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
11949823 AGATCGCAAC
* *
11949833 TGATATCATTAAGGTTCACTGATTTAATATCACAGT
1 TGATACCATTAAGGTTCACTGATTTAAAATCACAGT
**
11949869 TGATACCATTAAGGTTCGTTGATTTAAAATCACA
1 TGATACCATTAAGGTTCACTGATTTAAAATCACA
11949903 ACCTAACTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (36 bp):
TGATACCATTAAGGTTCACTGATTTAAAATCACAGT
Found at i:11949972 original size:167 final size:167
Alignment explanation
Indices: 11949684--11950033 Score: 470
Period size: 167 Copynumber: 2.1 Consensus size: 167
11949674 ACATAGTTTG
* * * * *
11949684 CTGATTTAAGCTCGCAGTTGATATCATTAAAGTTCACTGATTTAAGATCACAACCTAAGTTCATT
1 CTGATTTAAGATCACAGTTGATACCATTAAAGTTCACTGATTTAAAATCACAACCTAACTTCATT
* * **
11949749 TGATTTAAGATCATGAACAATCTTATTTGAGTTAGTTGATTTAAGATCACTACTCCAAACAACTC
66 AGATTTAAGATCACGAACAATCTTATTTGAGTTAACTGATTTAAGATCACTACTCCAAACAACTC
11949814 ATTGATTTAAGATCGCAACTGATATCATTAAGGTTCA
131 ATTGATTTAAGATCGCAACTGATATCATTAAGGTTCA
* * **
11949851 CTGATTTAATATCACAGTTGATACCATTAAGGTTCGTTGATTTAAAATCACAACCTAACTTCA-T
1 CTGATTTAAGATCACAGTTGATACCATTAAAGTTCACTGATTTAAAATCACAACCTAACTTCATT
* * *
11949915 AGAGTTTAAGATCACGAATAATTTTATTTGAGTTAACTGATTTAATATCGA-TACTCCAAACAAC
66 AGA-TTTAAGATCACGAACAATCTTATTTGAGTTAACTGATTTAAGATC-ACTACTCCAAACAAC
* * * * *
11949979 TCGTTGATTTAATATCGCAGCTGATATCATTAAGTTTTA
129 TCATTGATTTAAGATCGCAACTGATATCATTAAGGTTCA
*
11950018 TTGATTTAAGATCACA
1 CTGATTTAAGATCACA
11950034 ATCTAAGTTC
Statistics
Matches: 158, Mismatches: 23, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
166 3 0.02
167 154 0.97
168 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (167 bp):
CTGATTTAAGATCACAGTTGATACCATTAAAGTTCACTGATTTAAAATCACAACCTAACTTCATT
AGATTTAAGATCACGAACAATCTTATTTGAGTTAACTGATTTAAGATCACTACTCCAAACAACTC
ATTGATTTAAGATCGCAACTGATATCATTAAGGTTCA
Found at i:11950191 original size:131 final size:131
Alignment explanation
Indices: 11949852--11950194 Score: 400
Period size: 131 Copynumber: 2.6 Consensus size: 131
11949842 TAAGGTTCAC
* * * * * * * * *
11949852 TGATTTAATATCACAGTTGATACCATTAAGGTTCGTTGATTTAAAATCACAACCTAACTTCA-TA
1 TGATTTAAAATCGCAGCTAATATCATTAAGATTCGTTGATTTAAGATCACAACCTAAGTTCATTT
* * *
11949916 GAGTTTAAGATCACGAATAATTTTATTTGAGTTAACTGATTTAATATCGATACTCCAAACAACTC
66 GA-TTTAAGATCATGAATAATCTTATTTGAGTTAACTGATTTAAGATCGATACTCCAAACAACTC
11949981 GT
130 GT
* * * ** *
11949983 TGATTTAATATCGCAGCTGATATCATTAAGTTTTATTGATTTAAGATCACAATCTAAGTTCATTT
1 TGATTTAAAATCGCAGCTAATATCATTAAGATTCGTTGATTTAAGATCACAACCTAAGTTCATTT
** * * * * *
11950048 GATTTAAGATCATGAATAATCTTATTTGAGTTAGTTGATTTAAGATTGCTACTCCAGACAGCTCT
66 GATTTAAGATCATGAATAATCTTATTTGAGTTAACTGATTTAAGATCGATACTCCAAACAACTCG
11950113 T
131 T
* * * *
11950114 TGATTTAAAATCGGAGCTAATATCATTAAGATTCGCTGATCTAAGATCACAACCTAAGTTTATTT
1 TGATTTAAAATCGCAGCTAATATCATTAAGATTCGTTGATTTAAGATCACAACCTAAGTTCATTT
*
11950179 GATTTAATATCATGAA
66 GATTTAAGATCATGAA
11950195 CAAGCTCATC
Statistics
Matches: 180, Mismatches: 31, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
131 177 0.98
132 3 0.02
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.38
Consensus pattern (131 bp):
TGATTTAAAATCGCAGCTAATATCATTAAGATTCGTTGATTTAAGATCACAACCTAAGTTCATTT
GATTTAAGATCATGAATAATCTTATTTGAGTTAACTGATTTAAGATCGATACTCCAAACAACTCG
T
Found at i:11952567 original size:20 final size:21
Alignment explanation
Indices: 11952542--11952583 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
11952532 AATATGCTGT
*
11952542 AAAATGAAAG-TTTTTGATAG
1 AAAATGAAAGATTATTGATAG
11952562 AAAATGAAAGATTATTGATAG
1 AAAATGAAAGATTATTGATAG
11952583 A
1 A
11952584 TAAACCACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (21 bp):
AAAATGAAAGATTATTGATAG
Found at i:11953303 original size:33 final size:33
Alignment explanation
Indices: 11953266--11953379 Score: 108
Period size: 33 Copynumber: 3.5 Consensus size: 33
11953256 TACCCAAATG
* *
11953266 GTACAACTTGAAAAGGTTATGTATACTTTGTGT
1 GTACCACTTGAAAAGGTTAAGTATACTTTGTGT
* * *
11953299 GTA-CATTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACCACTTGAAAAGGTTAAGTATACTTTGTGT
* **
11953331 ATACCA-TATGAAAA-GAAAAGTTATACTTTGTGT
1 GTACCACT-TGAAAAGGTTAAG-TATACTTTGTGT
*
11953364 GTACCACTTGGAAAGG
1 GTACCACTTGAAAAGG
11953380 AATGTACACC
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
32 31 0.48
33 32 0.49
34 2 0.03
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (33 bp):
GTACCACTTGAAAAGGTTAAGTATACTTTGTGT
Found at i:11953314 original size:32 final size:33
Alignment explanation
Indices: 11953277--11953379 Score: 111
Period size: 32 Copynumber: 3.2 Consensus size: 33
11953267 TACAACTTGA
*
11953277 AAAGGTTATGTATACTTTGTGTGTA-CATTTGG
1 AAAGGTTAAGTATACTTTGTGTGTACCATTTGG
* * *
11953309 AAAGGTTAGGTATACTTTGTGTATACCATAT-G
1 AAAGGTTAAGTATACTTTGTGTGTACCATTTGG
* ** *
11953341 AAAAGAAAAGTTATACTTTGTGTGTACCACTTGG
1 AAAGGTTAAG-TATACTTTGTGTGTACCATTTGG
11953375 AAAGG
1 AAAGG
11953380 AATGTACACC
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
32 30 0.53
33 22 0.39
34 5 0.09
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (33 bp):
AAAGGTTAAGTATACTTTGTGTGTACCATTTGG
Found at i:11957449 original size:62 final size:62
Alignment explanation
Indices: 11957379--11957502 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
11957369 AACTCAGTTT
11957379 ACTCCTTGTGAGTCTTGATAGTTATAAAATACAGTATTACAAATTTTCCCCCTAGCAACTCA
1 ACTCCTTGTGAGTCTTGATAGTTATAAAATACAGTATTACAAATTTTCCCCCTAGCAACTCA
11957441 ACTCCTTGTGAGTCTTGATAGTTATAAAATACAGTATTACAAATTTTCCCCCTAGCAACTCA
1 ACTCCTTGTGAGTCTTGATAGTTATAAAATACAGTATTACAAATTTTCCCCCTAGCAACTCA
11957503 TGGAAAATAC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (62 bp):
ACTCCTTGTGAGTCTTGATAGTTATAAAATACAGTATTACAAATTTTCCCCCTAGCAACTCA
Found at i:11964366 original size:3 final size:3
Alignment explanation
Indices: 11964358--11964390 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
11964348 ATTAACCCAG
11964358 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
11964391 TGAAAATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:11966957 original size:17 final size:19
Alignment explanation
Indices: 11966932--11966968 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
11966922 AAACAATTAA
11966932 TTAATATT-GGAAATAAAT
1 TTAATATTGGGAAATAAAT
11966950 TTAA-ATTGGGAAATAAAT
1 TTAATATTGGGAAATAAAT
11966968 T
1 T
11966969 CGGATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.38
Consensus pattern (19 bp):
TTAATATTGGGAAATAAAT
Found at i:11969091 original size:24 final size:24
Alignment explanation
Indices: 11969042--11969117 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
11969032 TATATAACGA
* * *
11969042 GAAGTTC-ATAAGAGCCATAATTGG
1 GAAGTTCAAAAAGAACCAT-ATCGG
* * *
11969066 GAAGTTCACAAAGAACCTTGTCGG
1 GAAGTTCAAAAAGAACCATATCGG
*
11969090 GAAGTTCAAAAAGATCCATATCGG
1 GAAGTTCAAAAAGAACCATATCGG
11969114 GAAG
1 GAAG
11969118 CTCTGGATGG
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
24 34 0.83
25 7 0.17
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (24 bp):
GAAGTTCAAAAAGAACCATATCGG
Found at i:11976899 original size:17 final size:17
Alignment explanation
Indices: 11976879--11976916 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
11976869 AATTGTCAGG
11976879 AGTTATCACACTATCAC
1 AGTTATCACACTATCAC
11976896 AGTTATCACACTATCAC
1 AGTTATCACACTATCAC
11976913 AGTT
1 AGTT
11976917 CGTATATCGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (17 bp):
AGTTATCACACTATCAC
Found at i:11986938 original size:23 final size:24
Alignment explanation
Indices: 11986888--11986940 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
11986878 CTTGTAACGA
* *
11986888 GAAGCTCACACAGAGCCATTTCAG
1 GAAGCTCACAAAGAGCCATATCAG
*
11986912 GAAGCTCATAAAGAGCC-TATCAG
1 GAAGCTCACAAAGAGCCATATCAG
11986935 GAAGCT
1 GAAGCT
11986941 TATCTGAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 11 0.42
24 15 0.58
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.17
Consensus pattern (24 bp):
GAAGCTCACAAAGAGCCATATCAG
Found at i:11991237 original size:27 final size:27
Alignment explanation
Indices: 11991196--11991441 Score: 321
Period size: 27 Copynumber: 9.1 Consensus size: 27
11991186 GGTCATTATT
* * *
11991196 TGACCGTGATGCCCCTGTAGAGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
11991223 TGACTGTAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
11991250 TGACCGTAATACCCCTATAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
11991277 TGACCGTAATATCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
11991304 TGACCGTAATACCCTTATAAGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* *
11991331 TGACCGTAACACCCTTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* *
11991358 TGAACGTAATACCCCTATAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
11991385 TGACTGTAATGCCCTTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
11991412 TGACTGTAATACCCTTGTATGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
11991439 TGA
1 TGA
11991442 TAATTATGCC
Statistics
Matches: 193, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 193 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
TGACCGTAATACCCCTGTAGGGTAAAA
Found at i:11991870 original size:33 final size:33
Alignment explanation
Indices: 11991828--11991893 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
11991818 TTAGGCCCAC
* *
11991828 ATTGTTACTGTATAGGGCTCAGGCCCAGACTGT
1 ATTGATACTGGATAGGGCTCAGGCCCAGACTGT
* *
11991861 ATTGATACTGGGTAGGGCTCAGGCCTAGACTGT
1 ATTGATACTGGATAGGGCTCAGGCCCAGACTGT
11991894 GTTATTCACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (33 bp):
ATTGATACTGGATAGGGCTCAGGCCCAGACTGT
Found at i:12004123 original size:4 final size:4
Alignment explanation
Indices: 12004114--12004147 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
12004104 TTGCTTGTAC
*
12004114 ATAA ATAA ATAA ATAAA ATGA ATAA ATAA ATAA A
1 ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA A
12004148 GGCTCAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:12004839 original size:12 final size:12
Alignment explanation
Indices: 12004824--12004849 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
12004814 AAAAAAAATC
12004824 TTATTTTATTAT
1 TTATTTTATTAT
12004836 TTATTTTATTAT
1 TTATTTTATTAT
12004848 TT
1 TT
12004850 TAATTTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTATTTTATTAT
Found at i:12007594 original size:20 final size:22
Alignment explanation
Indices: 12007551--12007594 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 22
12007541 ACAGTTCACG
*
12007551 TATATTTCTAAAAATTAATACA
1 TATATTTCTAAAAATAAATACA
*
12007573 TATATTT-TAAAAA-AAATTCA
1 TATATTTCTAAAAATAAATACA
12007593 TA
1 TA
12007595 AAAACTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 6 0.30
22 7 0.35
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (22 bp):
TATATTTCTAAAAATAAATACA
Found at i:12008138 original size:18 final size:18
Alignment explanation
Indices: 12008117--12008176 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
12008107 AATCATTTAC
12008117 ATTTTAATATTATTTTCA
1 ATTTTAATATTATTTTCA
*
12008135 ATTTTATAAATT-TTTT-A
1 ATTTTA-ATATTATTTTCA
* *
12008152 ATTCTTAATAATAATTTTCT
1 ATT-TTAAT-ATTATTTTCA
12008172 ATTTT
1 ATTTT
12008177 CTATAATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
17 5 0.15
18 15 0.45
19 10 0.30
20 3 0.09
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTAATATTATTTTCA
Found at i:12008176 original size:37 final size:37
Alignment explanation
Indices: 12008112--12008203 Score: 102
Period size: 37 Copynumber: 2.5 Consensus size: 37
12008102 TTTAAAATCA
*
12008112 TTTACATTTTAATATTATTTTCAATTTTATA-AATTT
1 TTTACATTTTAATATAATTTTCAATTTTATATAATTT
* *
12008148 TTTA-ATTCTTAATAATAATTTTCTATTTTCTATAATTT
1 TTTACATT-TTAAT-ATAATTTTCAATTTTATATAATTT
12008186 TTGTAC-TTTT-ATATAATT
1 TT-TACATTTTAATATAATT
12008204 ATTTAATGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
35 3 0.06
36 15 0.31
37 17 0.35
38 9 0.19
39 4 0.08
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.61
Consensus pattern (37 bp):
TTTACATTTTAATATAATTTTCAATTTTATATAATTT
Found at i:12008305 original size:19 final size:18
Alignment explanation
Indices: 12008112--12008310 Score: 70
Period size: 19 Copynumber: 10.3 Consensus size: 18
12008102 TTTAAAATCA
* *
12008112 TTTACATTTTAATATTATT
1 TTTATATTTT-ATATAATT
*
12008131 TTCA-ATTTTATA-AATT
1 TTTATATTTTATATAATT
12008147 TTT-TAATTCTTA-ATAATAAT
1 TTTAT-ATT-TTATATAAT--T
* *
12008167 TTTCTATTTTCTATAATT
1 TTTATATTTTATATAATT
*
12008185 TTTGTACTTTTATATAATT
1 TTTATA-TTTTATATAATT
12008204 ATTTAATGATTTTAT-TAATT
1 -TTT-AT-ATTTTATATAATT
* *
12008224 TTTAAATATTTTCTATACCGTT
1 TTT--ATATTTTATATA--ATT
*
12008246 TTCTATAATTTT-TAAAATATT
1 TT-TAT-ATTTTAT-ATA-ATT
*
12008267 TTTATTATCTTT-TATTATT
1 TTTA-TAT-TTTATATAATT
12008286 TTGTATATTTTATATAATT
1 TT-TATATTTTATATAATT
*
12008305 TCTATA
1 TTTATA
12008311 AACACCATTT
Statistics
Matches: 141, Mismatches: 16, Indels: 47
0.69 0.08 0.23
Matches are distributed among these distances:
16 5 0.04
17 7 0.05
18 24 0.17
19 40 0.28
20 32 0.23
21 20 0.14
22 12 0.09
23 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTATATTTTATATAATT
Found at i:12011837 original size:14 final size:15
Alignment explanation
Indices: 12011808--12011838 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
12011798 AGTATATATC
12011808 AATAGAACATAATGA
1 AATAGAACATAATGA
12011823 AATAGAACA-AATGA
1 AATAGAACATAATGA
12011837 AA
1 AA
12011839 GATAATGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (15 bp):
AATAGAACATAATGA
Found at i:12013356 original size:13 final size:13
Alignment explanation
Indices: 12013338--12013362 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12013328 AAATTGTTAT
12013338 TTCTGTACCTGTA
1 TTCTGTACCTGTA
12013351 TTCTGTACCTGT
1 TTCTGTACCTGT
12013363 GTTTGAGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.16, T:0.48
Consensus pattern (13 bp):
TTCTGTACCTGTA
Found at i:12015295 original size:33 final size:33
Alignment explanation
Indices: 12015253--12015319 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
12015243 AAAAAGTATA
12015253 ATTATAAGCAAGTATATACCAATCGAGCATAAC
1 ATTATAAGCAAGTATATACCAATCGAGCATAAC
12015286 ATTATAAGCAAGTATATACCAATCGAGCATAAC
1 ATTATAAGCAAGTATATACCAATCGAGCATAAC
12015319 A
1 A
12015320 GATATAACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.46, C:0.18, G:0.12, T:0.24
Consensus pattern (33 bp):
ATTATAAGCAAGTATATACCAATCGAGCATAAC
Found at i:12021982 original size:17 final size:18
Alignment explanation
Indices: 12021962--12021999 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
12021952 TTAAAAAACC
12021962 TAAAATA-ATATAAAAAT
1 TAAAATATATATAAAAAT
*
12021979 TAAAATATTATTTAAAAAT
1 TAAAATA-TATATAAAAAT
12021998 TA
1 TA
12022000 TTAAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
19 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAAATATATATAAAAAT
Found at i:12034122 original size:43 final size:43
Alignment explanation
Indices: 12034051--12034152 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
12034041 GTGTTGATAT
* * *
12034051 TATTGTGAGATATTATATTTTAGCAATTTGATTCTTAAT-AGGA
1 TATTATGAGATATTATATCTTAGCAATTTGATTCCTAATGA-GA
* *
12034094 TATTATGAGATATTATCTCTTAGTAATTTGATTCCTAATGAGA
1 TATTATGAGATATTATATCTTAGCAATTTGATTCCTAATGAGA
12034137 TATTAT-AGAATATTAT
1 TATTATGAG-ATATTAT
12034153 TATAAGATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
42 2 0.04
43 49 0.94
44 1 0.02
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.46
Consensus pattern (43 bp):
TATTATGAGATATTATATCTTAGCAATTTGATTCCTAATGAGA
Found at i:12034644 original size:6 final size:6
Alignment explanation
Indices: 12034635--12034677 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
12034625 TATTTCGTAG
* * *
12034635 TTTTAA TTTTAA TTTTAA CTTTAA CTTTAG TCTTTAA TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA T-TTTAA TTTTAA
12034678 AATCCCCCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 27 0.84
7 5 0.16
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (6 bp):
TTTTAA
Found at i:12038236 original size:15 final size:16
Alignment explanation
Indices: 12038210--12038244 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
12038200 TTGGAGTAAT
12038210 TCCTTACTCCCTATTC
1 TCCTTACTCCCTATTC
*
12038226 TCCTT-CTCCCTTTTC
1 TCCTTACTCCCTATTC
12038241 TCCT
1 TCCT
12038245 CTTCTAGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.06, C:0.46, G:0.00, T:0.49
Consensus pattern (16 bp):
TCCTTACTCCCTATTC
Found at i:12053654 original size:26 final size:27
Alignment explanation
Indices: 12053625--12053900 Score: 273
Period size: 26 Copynumber: 10.4 Consensus size: 27
12053615 CCCCGATTTA
* *
12053625 TAAAATTATCTAAATACCCTCAG-TTG
1 TAAAATTACCGAAATACCCTCAGTTTG
*
12053651 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCGAAATACCCTC-AGTTTG
** * *
12053678 TAAAATTATTGAAATACCC-CTGATTG
1 TAAAATTACCGAAATACCCTCAGTTTG
**
12053704 TAAAATTACCGAAATACTTTCAGTTTG
1 TAAAATTACCGAAATACCCTCAGTTTG
* * *
12053731 TAAAATGACCAAAATACCC-C-CTATTG
1 TAAAATTACCGAAATACCCTCAGT-TTG
12053757 TAAAATTACCGAAATACCCTC-GATTTG
1 TAAAATTACCGAAATACCCTCAG-TTTG
* *
12053784 TAAAATTATCGAAATATGCCT-AGTTTG
1 TAAAATTACCGAAATA-CCCTCAGTTTG
* *
12053811 TAAAATTACCGAAATACCCCCA-ATTG
1 TAAAATTACCGAAATACCCTCAGTTTG
* * *
12053837 TAAAATTACTGAAATACCC-CTGATTG
1 TAAAATTACCGAAATACCCTCAGTTTG
*
12053863 TAAAATTACCGAAATACCCCCAGTTTG
1 TAAAATTACCGAAATACCCTCAGTTTG
12053890 TAAAATTACCG
1 TAAAATTACCG
12053901 TAACACCCCT
Statistics
Matches: 207, Mismatches: 32, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
25 3 0.01
26 104 0.50
27 95 0.46
28 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCAGTTTG
Found at i:12053898 original size:53 final size:53
Alignment explanation
Indices: 12053625--12053898 Score: 317
Period size: 53 Copynumber: 5.2 Consensus size: 53
12053615 CCCCGATTTA
* * *
12053625 TAAAATTATCT-AAATA-CCCTCAGTTGTAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTA-CTGAAATACCCCTGA-TTGTAAAATTACCGAAATACCCCCAGTTTG
* ***
12053678 TAAAATTATTGAAATACCCCTGATTGTAAAATTACCGAAATACTTTCAGTTTG
1 TAAAATTACTGAAATACCCCTGATTGTAAAATTACCGAAATACCCCCAGTTTG
* ** *
12053731 TAAAATGACCAAAATACCCCCT-ATTGTAAAATTACCGAAATACCCTC-GATTTG
1 TAAAATTACTGAAATA-CCCCTGATTGTAAAATTACCGAAATACCCCCAG-TTTG
** * *
12053784 TAAAATTA-TCGAAATATGCCTAGTTTGTAAAATTACCGAAATACCCCCA-ATTG
1 TAAAATTACT-GAAATACCCCT-GATTGTAAAATTACCGAAATACCCCCAGTTTG
12053837 TAAAATTACTGAAATACCCCTGATTGTAAAATTACCGAAATACCCCCAGTTTG
1 TAAAATTACTGAAATACCCCTGATTGTAAAATTACCGAAATACCCCCAGTTTG
12053890 TAAAATTAC
1 TAAAATTAC
12053899 CGTAACACCC
Statistics
Matches: 186, Mismatches: 25, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
52 31 0.17
53 121 0.65
54 34 0.18
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
TAAAATTACTGAAATACCCCTGATTGTAAAATTACCGAAATACCCCCAGTTTG
Found at i:12053958 original size:27 final size:26
Alignment explanation
Indices: 12053810--12053960 Score: 108
Period size: 27 Copynumber: 5.7 Consensus size: 26
12053800 TGCCTAGTTT
* ** *
12053810 GTAAAATTACCGAAATACCCC-CAATT
1 GTAAAATTACCGTAATACCCCTGTA-G
* * *
12053836 GTAAAATTACTGAAATACCCCTG-ATT
1 GTAAAATTACCGTAATACCCCTGTA-G
* * **
12053862 GTAAAATTACCGAAATACCCCCAGTTT
1 GTAAAATTACCGTAATA-CCCCTGTAG
*
12053889 GTAAAATTACCGTAACACCCCTGTAG
1 GTAAAATTACCGTAATACCCCTGTAG
* *
12053915 GATAAAATTATCGTAATGCCCCTGTATG
1 G-TAAAATTACCGTAATACCCCTGTA-G
*
12053943 GTAAAATGACCGTAATAC
1 GTAAAATTACCGTAATAC
12053961 ACTTGTATAG
Statistics
Matches: 104, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
26 46 0.44
27 56 0.54
28 2 0.02
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (26 bp):
GTAAAATTACCGTAATACCCCTGTAG
Found at i:12054157 original size:27 final size:27
Alignment explanation
Indices: 12054105--12054189 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
12054095 GGAAGTTCTG
* *
12054105 TACTGGTGACTATGTCAC-ATTCACTGT
1 TACTGGTGGCTATGCCACAATT-ACTGT
*
12054132 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGT
* * *
12054159 TACGGGTGGCTTTGCCACACTTA-TGT
1 TACTGGTGGCTATGCCACAATTACTGT
12054185 T-CTGG
1 TACTGG
12054190 CAGCTATACT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 3 0.06
26 3 0.06
27 40 0.82
28 3 0.06
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGT
Found at i:12064124 original size:28 final size:29
Alignment explanation
Indices: 12064060--12064125 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
12064050 TTTTCATTTA
* * *
12064060 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAAATTAACCCCTCAATTGACACT
* *
12064089 TTTCTCAAATTAATCCCT-AATTGACATT
1 TTTCTCAAATTAACCCCTCAATTGACACT
*
12064117 TTTGTCAAA
1 TTTCTCAAA
12064126 AATCACTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.32, C:0.24, G:0.03, T:0.41
Consensus pattern (29 bp):
TTTCTCAAATTAACCCCTCAATTGACACT
Found at i:12064888 original size:38 final size:38
Alignment explanation
Indices: 12064846--12064922 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
12064836 ATAGAACAAA
12064846 TCAACACTAGCAGTAAACATGCTTAACATGTATTCAAT
1 TCAACACTAGCAGTAAACATGCTTAACATGTATTCAAT
* * *
12064884 TCAACACTGGTAGTAAGCATGCTTAACATGTATTCAAT
1 TCAACACTAGCAGTAAACATGCTTAACATGTATTCAAT
12064922 T
1 T
12064923 GGGTGGTAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.31
Consensus pattern (38 bp):
TCAACACTAGCAGTAAACATGCTTAACATGTATTCAAT
Found at i:12065800 original size:19 final size:20
Alignment explanation
Indices: 12065776--12065822 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
12065766 AATATAATGC
* * *
12065776 AAAAAAGAG-GAAAGATAAG
1 AAAAAAGAGAAAAAAATAAA
12065795 AAAAAAGAGAAAAAAATAAA
1 AAAAAAGAGAAAAAAATAAA
12065815 AAAAAAGA
1 AAAAAAGA
12065823 TGACAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (20 bp):
AAAAAAGAGAAAAAAATAAA
Found at i:12065830 original size:20 final size:19
Alignment explanation
Indices: 12065754--12065831 Score: 59
Period size: 20 Copynumber: 3.8 Consensus size: 19
12065744 AATTGACAAC
12065754 AAAAAGATGAAAAATATAATGCA
1 AAAAAGATGAAAAATA-AA---A
* *
12065777 AAAAAGAGGAAAGATAAGAA
1 AAAAAGATGAAAAATAA-AA
*
12065797 AAAAGAGA-AAAAAATAAAA
1 AAAA-AGATGAAAAATAAAA
12065816 AAAAAGATGACAAAAT
1 AAAAAGATGA-AAAAT
12065832 TCTAATAGGA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
18 3 0.07
19 7 0.15
20 17 0.37
21 3 0.07
22 1 0.02
23 15 0.33
ACGTcount: A:0.72, C:0.03, G:0.15, T:0.10
Consensus pattern (19 bp):
AAAAAGATGAAAAATAAAA
Found at i:12067894 original size:13 final size:13
Alignment explanation
Indices: 12067876--12067900 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12067866 GTCATGTGAC
12067876 AAAAATAAAATAA
1 AAAAATAAAATAA
12067889 AAAAATAAAATA
1 AAAAATAAAATA
12067901 TACGATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAATAAAATAA
Found at i:12074509 original size:88 final size:85
Alignment explanation
Indices: 12074393--12074584 Score: 190
Period size: 88 Copynumber: 2.2 Consensus size: 85
12074383 GACTCTCTAA
** * *
12074393 AAACAGACATTAAAAATAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCT
1 AAACAGA-ATTAAAAGCAGATATTGAAAATACCTCAGCACGTGA-CCAAGGCTCAACTCACCTCT
12074458 CGCAATATGAGTTGATTTTTTG
64 CGCAATATGAGTTGATTTTTTG
** * * * * *
12074480 AAACTTAACTTGAAAAGCAGATTTTGAAAATACCTC-GATATGTGACTGAAGGTTCAACTCACCT
1 AAACAGAA-TT-AAAAGCAGATATTGAAAATACCTCAG-CACGTGAC-CAAGGCTCAACTCACCT
12074544 CTCGCAATATGAGTTGA-TTTTTG
62 CTCGCAATATGAGTTGATTTTTTG
12074567 AAAAACAGAAATTAAAAG
1 --AAACAG-AATTAAAAG
12074585 ACTCAACTCA
Statistics
Matches: 85, Mismatches: 13, Indels: 13
0.77 0.12 0.12
Matches are distributed among these distances:
86 1 0.01
87 15 0.18
88 61 0.72
89 6 0.07
90 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (85 bp):
AAACAGAATTAAAAGCAGATATTGAAAATACCTCAGCACGTGACCAAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTG
Found at i:12074609 original size:30 final size:30
Alignment explanation
Indices: 12074573--12074631 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
12074563 TTTGAAAAAC
12074573 AGAAATT-AAAAGACTCAACTCAACTCTCGT
1 AGAAATTAAAAAG-CTCAACTCAACTCTCGT
*
12074603 AGAAATTAAAAAGCTCAACTCACCTCTCG
1 AGAAATTAAAAAGCTCAACTCAACTCTCG
12074632 CAATATGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.42, C:0.25, G:0.10, T:0.22
Consensus pattern (30 bp):
AGAAATTAAAAAGCTCAACTCAACTCTCGT
Found at i:12074790 original size:88 final size:88
Alignment explanation
Indices: 12074657--12074818 Score: 227
Period size: 88 Copynumber: 1.8 Consensus size: 88
12074647 TTTTTTGAAA
* * * *
12074657 AAAAACAGAAATTGAAAATAGCTTAGCACGTGAGCCAAGGCTCAACTCACTTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTTAGCACGTGACCCAAGGCTCAACTCACATCTCGCAATATGAG
12074722 TTGATTTTTGAAAACAGAATCTG
66 TTGATTTTTGAAAACAGAATCTG
** * * *
12074745 AAAAACAGATTTTGAAAATACCTT-GACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGA
1 AAAAACAGAAATTGAAAATACCTTAG-CACGTGACCCAAGGCTCAACTCACATCTCGCAATATGA
12074809 GTTGATTTTT
65 GTTGATTTTT
12074819 TTGAAAAATA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 1 0.02
88 63 0.98
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTTAGCACGTGACCCAAGGCTCAACTCACATCTCGCAATATGAG
TTGATTTTTGAAAACAGAATCTG
Found at i:12074955 original size:77 final size:78
Alignment explanation
Indices: 12074782--12075319 Score: 343
Period size: 77 Copynumber: 6.8 Consensus size: 78
12074772 ATGTGACCCG
* * * * *
12074782 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG--AAAATACCT
* * * *
12074847 CAGTATGTGATCTGA
64 CAATACGTGAGCTCA
*
12074862 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
*
12074926 ATGCGTGAGC-CA
66 ATACGTGAGCTCA
*
12074938 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGGAAAACGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAGACAGAAATT-GAAAA---
* ** * * *
12075003 AAATTGAATATACCTCG-GCGTGTGACCTG
59 TACCT-CA-ATACGT-GAGC---T---C-A
* ** * * *
12075032 AGGCTCAACTCGCCTCTTACAATACGAGTTGATTTTTTTGACA-ACAGAAATTGAAATTACCTC-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
* ** *
12075095 A-GCGTGTCCT-G
66 ATACGTGAGCTCA
*
12075106 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
* * * **
12075170 A-GCATG-TCTTG
66 ATACGTGAGCTCA
** * *
12075181 AGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAGAAATTGAAAATACCT
* * * **
12075246 C-A-GCATG-TCTTG
64 CAATACGTGAGCTCA
* ** * *
12075258 AGGCTCAACTAATTTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
12075320 GCGTGTCTTG
Statistics
Matches: 385, Mismatches: 48, Indels: 57
0.79 0.10 0.12
Matches are distributed among these distances:
72 19 0.05
73 8 0.02
74 41 0.11
75 54 0.14
76 2 0.01
77 119 0.31
79 48 0.12
80 21 0.05
81 6 0.02
82 3 0.01
83 1 0.00
84 2 0.01
85 1 0.00
86 8 0.02
87 1 0.00
89 4 0.01
90 8 0.02
91 10 0.03
93 1 0.00
94 28 0.07
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
ATACGTGAGCTCA
Found at i:12075187 original size:75 final size:74
Alignment explanation
Indices: 12074995--12075341 Score: 437
Period size: 77 Copynumber: 4.6 Consensus size: 74
12074985 GCAGAAATTG
* * * * * * *
12074995 GAAAACGGAAATTGAATATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTTACAATACGAG
1 GAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCACCTCTCACAATATGAG
12075060 TTGATTTTTTT
64 TTGATTTTTTT
* * * *
12075071 GACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTT
12075136 GATTTTTTT
66 GATTTTTTT
* **
12075145 GAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGT
1 G-AAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGT
12075210 TGATTTTTTTTT
65 TGA--TTTTTTT
* * ** *
12075222 GAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGT
1 G-AAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGT
*
12075287 TGA--ATTTT
65 TGATTTTTTT
*
12075295 GAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA
12075342 TTTTGAACAG
Statistics
Matches: 246, Mismatches: 22, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
72 43 0.17
73 5 0.02
74 40 0.16
75 59 0.24
76 26 0.11
77 73 0.30
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (74 bp):
GAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTT
GATTTTTTT
Found at i:12075221 original size:245 final size:245
Alignment explanation
Indices: 12074404--12075240 Score: 779
Period size: 253 Copynumber: 3.4 Consensus size: 245
12074394 AACAGACATT
* *
12074404 AAAAATAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCA--TGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
** * ** * *
12074469 TTGA----TTTTTTG-AAACTTAA-CTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CT
64 TTGATTTTTTTTTTGAAAACAGAATC-TGAAAAACAGAAATTGAAAATACCTCGACATGTGACCC
* * * *
12074527 GAAGGTTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATT-AAAAGACTC
128 G-AGGCTCAACTCACATCTCACAATACGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA-A-T-
* *
12074589 AACTCA-ACTCTCGTAGAAAT-TAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTT
189 ACCTCAGA----CGT-G--ATCT--GAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTT
12074652 TG
244 TG
* *
12074654 AAAAAAAACAGAAATTGAAAATAGCTTAGCACGTGAGCCAAGGCTCAACTCACTTCTTGCAATAT
1 ---AAAAACAGAAATTGAAAATAGCTCAGCA--TGAGCCAAGGCTCAACTCACTTCTCGCAATAT
** *
12074719 GAGTTGA-----TTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTTGACATGTGAC
61 GAGTTGATTTTTTTTTTGAAAACAGAATCTGAAAAACAGAAATTGAAAATACCTCGACATGTGAC
* ** * *
12074779 CCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATA
126 CCGAGGCTCAACTCACATCTCACAATACGAGTTGATTTTTTTGAAAAACAGAAATTG-AAAAATA
*
12074844 CCTCAGTATGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
190 CCTCAG-ACGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * *
12074901 AAAGACAGAAATTGAAAATAGCTCAATGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTC-A-GCATGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
* * * * * *
12074966 TTGATTTTTTTTTTGAAAGGCAGAAAT-TGGAAAACGGAAATTGAATATACCTCGGCGTGTGACC
64 TTGATTTTTTTTTTGAAA-ACAG-AATCTGAAAAACAGAAATTGAAAATACCTCGACATGTGACC
* * * * * *
12075030 TGAGGCTCAACTCGCCTCTTACAATACGAGTTGATTTTTTTG-ACAACAGAAATTG-AAATTACC
127 CGAGGCTCAACTCACATCTCACAATACGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACC
*
12075093 TCAG-CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
192 TCAGACGTGAT-CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * ** * *
12075146 AAAAACAGAAATTGAAAATACCTCAGCATG-TCTTGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAAACAGAAATTGAAAATAGCTCAGCATGAGC-CAAGGCTCAACTCACTTCTCGCAATATGAGT
12075210 TGA-TTTTTTTTTGAAAAACAGAAAT-TGAAAA
65 TGATTTTTTTTTTG-AAAACAG-AATCTGAAAA
12075241 TACCTCAGCA
Statistics
Matches: 506, Mismatches: 56, Indels: 55
0.82 0.09 0.09
Matches are distributed among these distances:
242 23 0.05
243 36 0.07
244 61 0.12
245 68 0.13
246 2 0.00
247 20 0.04
248 31 0.06
249 21 0.04
250 68 0.13
251 4 0.01
252 8 0.02
253 132 0.26
254 8 0.02
255 18 0.04
256 2 0.00
257 4 0.01
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29
Consensus pattern (245 bp):
AAAAACAGAAATTGAAAATAGCTCAGCATGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTT
GATTTTTTTTTTGAAAACAGAATCTGAAAAACAGAAATTGAAAATACCTCGACATGTGACCCGAG
GCTCAACTCACATCTCACAATACGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTCAG
ACGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
Found at i:12075327 original size:149 final size:147
Alignment explanation
Indices: 12074995--12075344 Score: 452
Period size: 149 Copynumber: 2.3 Consensus size: 147
12074985 GCAGAAATTG
* * * *** *
12074995 GAAAACGGAAATTG-AATATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTTACAATACGA
1 GAAAACAGAAATTGAAAT-TACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATACGA
* * * *
12075059 GTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
63 GTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTCTC
*
12075124 GCAATATGAGTTGATTTTTTT
128 GCAATATGAGTTGA-TATTTT
* * *
12075145 GAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGT
1 G-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGAGT
* **
12075210 TGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCT
65 TGA--TTTTTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTCT
12075275 CGCAATATGAGTTGA-ATTTT
127 CGCAATATGAGTTGATATTTT
12075295 GAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 GAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
12075345 TGAACAGAAA
Statistics
Matches: 175, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
149 77 0.44
150 6 0.03
151 31 0.18
152 61 0.35
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (147 bp):
GAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGAGTT
GATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTCTCGCA
ATATGAGTTGATATTTT
Found at i:12075364 original size:49 final size:49
Alignment explanation
Indices: 12075298--12075393 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
12075288 GAATTTTGAA
*
12075298 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
12075347 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
12075394 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:12075379 original size:121 final size:121
Alignment explanation
Indices: 12075226--12075465 Score: 435
Period size: 121 Copynumber: 2.0 Consensus size: 121
12075216 TTTTTTGAAA
*
12075226 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
12075291 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* * *
12075347 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
12075412 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
12075466 CTCGCAATAT
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 114 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:12075427 original size:72 final size:72
Alignment explanation
Indices: 12075347--12075571 Score: 283
Period size: 72 Copynumber: 3.0 Consensus size: 72
12075337 ACTCATTTTG
12075347 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
12075412 TTTTGAA
66 TTTTGAA
12075419 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
12075484 TTTTTTTTTGAA
66 -----TTTTGAA
* * * ** ** *
12075496 AGACAGAAATTGAAAATACCTCAGCATGTGAAC-CAAGGCTCAACTCACCTCTCGCAATATGAGC
1 A-ACAGAAATTGAAATTACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
12075560 TG-ATTTTGAA
62 TGAATTTTGAA
12075570 AA
1 AA
12075572 AGTAGAAATT
Statistics
Matches: 136, Mismatches: 8, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
72 65 0.48
73 1 0.01
74 8 0.06
77 8 0.06
78 20 0.15
79 1 0.01
80 32 0.24
81 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:12075483 original size:193 final size:197
Alignment explanation
Indices: 12075149--12075520 Score: 563
Period size: 198 Copynumber: 1.9 Consensus size: 197
12075139 TTTTTTGAAA
*
12075149 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA-
* *
12075214 TTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCA
65 --TATTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCA
*
12075279 ATATGAGTTGAA-TTTTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
128 ATATGAGTTGAATTTTTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA
12075342 TTTTG
193 TTTTG
* * *
12075347 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
* * *
12075411 ATTTTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
66 ATTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATA
12075475 TGAGTTGAATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
131 TGAGTTGAA----TTTTTGAAAGACAGAAATTGAAAATACCTCAGC
12075521 ATGTGAACCA
Statistics
Matches: 158, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
193 63 0.40
194 5 0.03
198 68 0.43
199 22 0.14
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (197 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
ATTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATA
TGAGTTGAATTTTTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
TG
Found at i:12075635 original size:54 final size:55
Alignment explanation
Indices: 12075530--12075640 Score: 145
Period size: 54 Copynumber: 2.0 Consensus size: 55
12075520 CATGTGAACC
* *
12075530 AAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AA
1 AAGGCTCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAA
* * * *
12075584 AAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAA
1 AAGGCTCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAA
12075639 AA
1 AA
12075641 CAGAAATTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
54 38 0.78
55 11 0.22
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (55 bp):
AAGGCTCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAA
Found at i:12075647 original size:13 final size:13
Alignment explanation
Indices: 12075620--12075653 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
12075610 GAGTTGATTC
*
12075620 TTGAACAACATAAA
1 TTGAA-AACAGAAA
12075634 TTGAAAACAGAAA
1 TTGAAAACAGAAA
12075647 TTGAAAA
1 TTGAAAA
12075654 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:12075701 original size:140 final size:140
Alignment explanation
Indices: 12075491--12076117 Score: 1168
Period size: 140 Copynumber: 4.5 Consensus size: 140
12075481 GAATTTTTTT
*
12075491 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
12075555 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
12075620 TTGAACAACATAAA
127 TTGAACAACGTAAA
12075634 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
12075699 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
12075764 ACAACGTAAA
131 ACAACGTAAA
*
12075774 TT-AAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
12075838 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
12075903 ACAACGTAAA
131 ACAACGTAAA
12075913 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
12075978 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
12076043 ACAACGTAAA
131 ACAACGTAAA
12076053 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
12076118 TTGAAATTAA
Statistics
Matches: 476, Mismatches: 6, Indels: 7
0.97 0.01 0.01
Matches are distributed among these distances:
139 140 0.29
140 307 0.64
142 23 0.05
143 6 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:12075775 original size:54 final size:53
Alignment explanation
Indices: 12075675--12075779 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 53
12075665 GACCTGAGGC
*
12075675 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTAAAAGGT
* * *
12075729 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTAAAA
12075780 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
54 36 0.80
55 5 0.11
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (53 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTAAAAGGT
Found at i:12075826 original size:279 final size:280
Alignment explanation
Indices: 12075491--12076117 Score: 1168
Period size: 279 Copynumber: 2.2 Consensus size: 280
12075481 GAATTTTTTT
*
12075491 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
12075555 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
12075620 TTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
127 TTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
*
12075685 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATAT
192 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATAT
12075750 GAGTTGATTCTTGAACAACGTAAA
257 GAGTTGATTCTTGAACAACGTAAA
*
12075774 TT-AAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
12075838 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
12075903 ACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
131 ACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
12075968 GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGT
196 GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGT
12076033 TGATTCTTGAACAACGTAAA
261 TGATTCTTGAACAACGTAAA
12076053 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
12076118 TTGAAATTAA
Statistics
Matches: 337, Mismatches: 5, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
278 3 0.01
279 246 0.73
280 61 0.18
281 22 0.07
282 3 0.01
283 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (280 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGT
TGATTCTTGAACAACGTAAA
Found at i:12075914 original size:54 final size:54
Alignment explanation
Indices: 12075814--12075919 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
12075804 GACCTGAGGC
*
12075814 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
12075868 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
12075920 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:12076054 original size:54 final size:54
Alignment explanation
Indices: 12075954--12076059 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
12075944 GACCTGAGGC
*
12075954 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
12076008 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
12076060 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:12076184 original size:72 final size:71
Alignment explanation
Indices: 12076050--12076215 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
12076040 TGAACAACGT
* * * *
12076050 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
12076115 GAGTTG
66 GAGTTG
*
12076121 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
12076186 TGAGTTG
65 TGAGTTG
**
12076193 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
12076216 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:12076310 original size:122 final size:125
Alignment explanation
Indices: 12076090--12076325 Score: 379
Period size: 122 Copynumber: 1.9 Consensus size: 125
12076080 GCGTGACCTG
* *
12076090 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
12076155 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* * * *
12076215 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
12076277 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA
12076326 AAATTAAAAA
Statistics
Matches: 103, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
122 68 0.66
123 7 0.07
124 1 0.01
125 27 0.26
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (125 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:12076334 original size:69 final size:70
Alignment explanation
Indices: 12076215--12076387 Score: 219
Period size: 69 Copynumber: 2.5 Consensus size: 70
12076205 AAAAATTAAA
* * * * *
12076215 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAACTAAAAATACCTCAACGTG
12076279 CCCCG
66 CCCCG
*
12076284 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA-A-AAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACATAAACTAAAAATACCTCAACGT
* **
12076347 GTCTTG
65 GCCCCG
12076353 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
12076388 CCCTTGAAAA
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
68 1 0.01
69 81 0.88
70 6 0.07
71 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:12091897 original size:15 final size:15
Alignment explanation
Indices: 12091877--12091942 Score: 55
Period size: 14 Copynumber: 4.3 Consensus size: 15
12091867 GATTGTAAAC
12091877 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
12091892 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
12091911 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
*
12091926 A-TTAATATTAA-AT
1 ATTTATTATTAATAT
12091939 ATTT
1 ATTT
12091943 TCAATAATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.26
15 10 0.24
16 1 0.02
17 7 0.17
18 1 0.02
19 9 0.21
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:12091992 original size:16 final size:16
Alignment explanation
Indices: 12091961--12091997 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
12091951 ATGTGAATAA
12091961 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
12091977 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
12091993 TATTA
1 TATTA
12091998 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:12092049 original size:22 final size:22
Alignment explanation
Indices: 12092009--12092064 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
12091999 AATAAAATTG
*
12092009 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
12092029 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
12092051 TATTAATAATTTAT
1 AAATAATAAATTAT
12092065 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:12098067 original size:46 final size:46
Alignment explanation
Indices: 12098000--12098169 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
12097990 TGTAACCCGC
* * *
12098000 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTTGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGAGCATTTACAT
* *
12098046 CCATAAGTGAACTCGAACTCAACTCAACAAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTC-GA-G-C-ATTTACAT
* * * *
12098096 CTC-T---CGAACTC-ATACTCAACTCAACGAGTTCGAACATTCACAT
1 C-CATAAGTGAACTCGA-ACTCAACTCAACGAGCTCGAGCATTTACAT
*
12098139 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGAACTCAACTCAACGAG
12098170 TTCGGATGCC
Statistics
Matches: 100, Mismatches: 13, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 56 0.56
47 24 0.24
48 1 0.01
49 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGAGCATTTACAT
Found at i:12100037 original size:61 final size:60
Alignment explanation
Indices: 12099940--12100189 Score: 188
Period size: 61 Copynumber: 4.2 Consensus size: 60
12099930 CCAAGAGAAT
* **
12099940 GAAAGCCATTGTGGTGAGTACTGAATGTAAAGGATAGCCTTTATGGCACAACTTTGGACAG
1 GAAAGCCTTTGTGGTGAGTACCAAATGTAAA-GATAGCCTTTATGGCACAACTTTGGACAG
* * * * *
12100001 GAAAGCCTTTGTGGTGAGTACCAAATTTAAATGATAGCCTTTGTGGCATAACTTTGGATAA
1 GAAAGCCTTTGTGGTGAGTACCAAATGTAAA-GATAGCCTTTATGGCACAACTTTGGACAG
* * * * ** * * *
12100062 GAAAGCCTTTATGG-CA-CAAC-TTTGGATAAGAAAGCCTTTATGGCACAACTTTGGATA-
1 GAAAGCCTTTGTGGTGAGTACCAAATGTA-AAGATAGCCTTTATGGCACAACTTTGGACAG
** * * * * *
12100119 GAAAGCCTTTGTGGCT-AGTACTGAATGTAAAAAACAACCTTTGTGGCACAA-TTCTAGACAG
1 GAAAGCCTTTGTGG-TGAGTACCAAATGT-AAAGATAGCCTTTATGGCACAACTT-TGGACAG
12100180 GAAAGCCTTT
1 GAAAGCCTTT
12100190 ATAGCGAGTA
Statistics
Matches: 148, Mismatches: 33, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
57 13 0.09
58 28 0.19
59 7 0.05
60 24 0.16
61 76 0.51
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (60 bp):
GAAAGCCTTTGTGGTGAGTACCAAATGTAAAGATAGCCTTTATGGCACAACTTTGGACAG
Found at i:12100133 original size:28 final size:29
Alignment explanation
Indices: 12100036--12100133 Score: 162
Period size: 29 Copynumber: 3.4 Consensus size: 29
12100026 TTTAAATGAT
* *
12100036 AGCCTTTGTGGCATAACTTTGGATAAGAA
1 AGCCTTTATGGCACAACTTTGGATAAGAA
12100065 AGCCTTTATGGCACAACTTTGGATAAGAA
1 AGCCTTTATGGCACAACTTTGGATAAGAA
12100094 AGCCTTTATGGCACAACTTTGGAT-AGAA
1 AGCCTTTATGGCACAACTTTGGATAAGAA
*
12100122 AGCCTTTGTGGC
1 AGCCTTTATGGC
12100134 TAGTACTGAA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
28 15 0.23
29 51 0.77
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (29 bp):
AGCCTTTATGGCACAACTTTGGATAAGAA
Found at i:12100184 original size:118 final size:119
Alignment explanation
Indices: 12099975--12100191 Score: 287
Period size: 118 Copynumber: 1.8 Consensus size: 119
12099965 TGTAAAGGAT
* ** * *
12099975 AGCCTTTATGGCACAACTTTGGACAGGAAAGCCTTTGTGGTGAGTACCAAATTTAAATGATAGCC
1 AGCCTTTATGGCACAACTTTGGACAGGAAAGCCTTTGTGGTGAGTACCAAATGTAAAAAACAACC
* * *
12100040 TTTGTGGCATAACTTTGGATAAGAAAGCCTTTATGGCACAACTTTGGATAAGAA
66 TTTGTGGCACAACTTTAGACAAGAAAGCCTTTATGGCACAACTTTGGATAAGAA
* **
12100094 AGCCTTTATGGCACAACTTTGGATA-GAAAGCCTTTGTGGCT-AGTACTGAATGTAAAAAACAAC
1 AGCCTTTATGGCACAACTTTGGACAGGAAAGCCTTTGTGG-TGAGTACCAAATGTAAAAAACAAC
*
12100157 CTTTGTGGCACAA-TTCTAGACAGGAAAGCCTTTAT
65 CTTTGTGGCACAACTT-TAGACAAGAAAGCCTTTAT
12100192 AGCGAGTACT
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
117 2 0.02
118 57 0.68
119 25 0.30
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (119 bp):
AGCCTTTATGGCACAACTTTGGACAGGAAAGCCTTTGTGGTGAGTACCAAATGTAAAAAACAACC
TTTGTGGCACAACTTTAGACAAGAAAGCCTTTATGGCACAACTTTGGATAAGAA
Found at i:12100919 original size:8 final size:8
Alignment explanation
Indices: 12100906--12100934 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
12100896 TTATGTTTAG
12100906 TATATTAT
1 TATATTAT
12100914 TATATTAT
1 TATATTAT
12100922 TATATTAT
1 TATATTAT
12100930 TATAT
1 TATAT
12100935 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:12100967 original size:5 final size:5
Alignment explanation
Indices: 12100957--12100993 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
12100947 TTATGTTTTA
12100957 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
12100994 AAACTAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:12102285 original size:15 final size:15
Alignment explanation
Indices: 12102265--12102321 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
12102255 CGATGAATTT
*
12102265 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
12102280 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
12102295 ATTGAAATTATATTG
1 ATTGAAATTATATTG
12102310 ATTG-AATTATAT
1 ATTGAAATTATAT
12102322 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:12102753 original size:21 final size:23
Alignment explanation
Indices: 12102694--12102759 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
12102684 GCTTTATCGA
12102694 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
12102717 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
12102739 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
12102760 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:12107370 original size:5 final size:5
Alignment explanation
Indices: 12107360--12107391 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
12107350 TTATGTTTTA
12107360 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
12107392 AAACTAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:12108668 original size:15 final size:15
Alignment explanation
Indices: 12108648--12108704 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
12108638 CGATGAATTT
*
12108648 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
12108663 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
12108678 ATTGAAATTATATTG
1 ATTGAAATTATATTG
12108693 ATTG-AATTATAT
1 ATTGAAATTATAT
12108705 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:12109136 original size:21 final size:22
Alignment explanation
Indices: 12109077--12109139 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
12109067 GCTTTATCAA
*
12109077 TCAGGAACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCG-ATT
* **
12109100 TCAGGCACCTCGTGTGTC-ATT
1 TCAGGCACTTTATGTGTCGATT
*
12109121 TTAGGCACTTTATGTGTCG
1 TCAGGCACTTTATGTGTCG
12109140 TATACTGATC
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
21 17 0.55
23 14 0.45
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.40
Consensus pattern (22 bp):
TCAGGCACTTTATGTGTCGATT
Found at i:12117598 original size:46 final size:44
Alignment explanation
Indices: 12117515--12117629 Score: 135
Period size: 46 Copynumber: 2.5 Consensus size: 44
12117505 GACTAGTGCT
12117515 AGTGTAAGACATGTCTGGGACATGCTTCGACCTCGAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCTTCGACCTCGAG--ATAAGCC
* ** *
12117561 AGTGTAAGACATGTCTGGGACATGCATT-G-GCTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGC-TTCGACCT-CGAGATAAGCC
12117605 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
12117630 GCATCGGCAC
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
44 13 0.21
45 17 0.27
46 30 0.48
47 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCTTCGACCTCGAGATAAGCC
Found at i:12122954 original size:41 final size:42
Alignment explanation
Indices: 12122630--12122956 Score: 409
Period size: 41 Copynumber: 8.0 Consensus size: 42
12122620 GTAAAACACA
* * *
12122630 GAGCAATAGCGGCGT-TTTTGGTAAAACGCCGTTAAAA-ACA
1 GAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAGTCG
* * *
12122670 GAGCAATAGCGGCGTTTTTTGGTAAAACGCCGCTAAAA-ACA
1 GAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAGTCG
* * *
12122711 GAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAGAAGTCG
1 GAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAGTCG
* *
12122753 GGGCAATAGCGGCG-CTTTTGGTAAAACGCCGCTAGAAGTCG
1 GAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAGTCG
* *
12122794 GGGCAATAGCGGCGT-TTTTGGTAAAACGCCGCTAGAAGTCG
1 GAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAGTCG
* *
12122835 GGGCAATAGCAGCG-CTTTTGGTAAAACGCCGCTAAAAGTCG
1 GAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAGTCG
* * * * *
12122876 GGGCATTAGTGGCG-CTTTTGGTAAAATGCCGCTAAAAGTTG
1 GAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAGTCG
*
12122917 GAGCACTAGCGGC-TCTTTTGGTAAAACGCCGCTAAAAGTC
1 GAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAGTC
12122957 ATATAACCCC
Statistics
Matches: 262, Mismatches: 20, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
40 15 0.06
41 233 0.89
42 14 0.05
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (42 bp):
GAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAGTCG
Found at i:12123037 original size:37 final size:37
Alignment explanation
Indices: 12122995--12123065 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
12122985 AAAAATCATG
* * *
12122995 AACACTAATCTATAACTCCTAAAATACTAAACCCTTA
1 AACACTAAACCATAACTCCTAAAACACTAAACCCTTA
* *
12123032 AACACTAAACCATAACTTCTAAAACCCTAAACCC
1 AACACTAAACCATAACTCCTAAAACACTAAACCC
12123066 CAAAAAACGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (37 bp):
AACACTAAACCATAACTCCTAAAACACTAAACCCTTA
Found at i:12123191 original size:7 final size:7
Alignment explanation
Indices: 12123179--12123242 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
12123169 TTTATTTTTT
*
12123179 GGTTTAC
1 GGTTTAA
12123186 GGTTTAA
1 GGTTTAA
**
12123193 TATTTAA
1 GGTTTAA
12123200 GGTTTAA
1 GGTTTAA
* *
12123207 GGTCTAT
1 GGTTTAA
*
12123214 GGTTTAG
1 GGTTTAA
*
12123221 GGTTTTAT
1 GG-TTTAA
12123229 GGTTTAA
1 GGTTTAA
12123236 GGTTTAA
1 GGTTTAA
12123243 TGGCCATGGG
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.23, C:0.03, G:0.27, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:12123231 original size:15 final size:15
Alignment explanation
Indices: 12123195--12123245 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
12123185 CGGTTTAATA
*
12123195 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
12123209 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
12123224 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
12123239 TTAATGG
1 TTTATGG
12123246 CCATGGGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:12123843 original size:7 final size:7
Alignment explanation
Indices: 12123833--12123865 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
12123823 AAATAAACTC
12123833 AAAATTT
1 AAAATTT
12123840 AAAAATTT
1 -AAAATTT
12123848 AAAATTT
1 AAAATTT
12123855 AAAATTT
1 AAAATTT
12123862 AAAA
1 AAAA
12123866 ATAAAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
AAAATTT
Found at i:12123846 original size:8 final size:8
Alignment explanation
Indices: 12123833--12123901 Score: 65
Period size: 8 Copynumber: 9.1 Consensus size: 8
12123823 AAATAAACTC
12123833 AAAATTTA
1 AAAATTTA
12123841 AAAATTT-
1 AAAATTTA
12123848 AAAATTT-
1 AAAATTTA
12123855 AAAATTTA
1 AAAATTTA
12123863 AAAA--TA
1 AAAATTTA
* *
12123869 AAAAATAA
1 AAAATTTA
* *
12123877 AAAAATAA
1 AAAATTTA
*
12123885 AAAACTTA
1 AAAATTTA
12123893 AAAATTTA
1 AAAATTTA
12123901 A
1 A
12123902 TATTTAATAT
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
6 6 0.11
7 14 0.26
8 34 0.63
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (8 bp):
AAAATTTA
Found at i:12123853 original size:15 final size:15
Alignment explanation
Indices: 12123833--12123908 Score: 64
Period size: 15 Copynumber: 5.1 Consensus size: 15
12123823 AAATAAACTC
12123833 AAAATTTAAAAATTT-
1 AAAATTT-AAAATTTA
12123848 AAAATTTAAAATTTA
1 AAAATTTAAAATTTA
** **
12123863 AAAATAAAAAATAAA
1 AAAATTTAAAATTTA
** *
12123878 AAAATAAAAAACTTA
1 AAAATTTAAAATTTA
*
12123893 AAAATTTAATATTTA
1 AAAATTTAAAATTTA
12123908 A
1 A
12123909 TATTTTAGTC
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
14 7 0.14
15 42 0.86
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (15 bp):
AAAATTTAAAATTTA
Found at i:12126429 original size:40 final size:40
Alignment explanation
Indices: 12126375--12126599 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
12126365 CTTGCGCAAG
* * * *
12126375 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
12126415 GCCTTCTGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
** * * *
12126455 GCCTTCGGGTTTTAGCTCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
12126495 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
12126535 GCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGTACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
12126576 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
12126600 CATTCGAATA
Statistics
Matches: 154, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.02
40 122 0.79
41 26 0.17
42 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:12126488 original size:80 final size:80
Alignment explanation
Indices: 12126339--12126599 Score: 269
Period size: 80 Copynumber: 3.3 Consensus size: 80
12126329 CTCAAGTAAT
* * * * * * * * *
12126339 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCTCGGATATAGT
*
12126402 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
12126417 CTTCTGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCTCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCTCGGATATAG
*
12126481 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * *
12126497 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAG-TCCGGTTATAG
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCT-CGGATATAG
* *
12126561 TCACCTAGTACAAAAGC
65 TCA-CTAGCACAAATGC
12126578 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
12126600 CATTCGAATA
Statistics
Matches: 150, Mismatches: 27, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
78 11 0.07
79 16 0.11
80 91 0.61
81 32 0.21
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCTCGGATATAGT
CACTAGCACAAATGC
Found at i:12134615 original size:40 final size:40
Alignment explanation
Indices: 12134569--12134793 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
12134559 CTTGCGCAAG
* * *
12134569 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
12134609 GCCTTCGGGGCTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
12134649 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
12134689 GCCTTCAGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
12134729 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
12134770 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
12134794 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:12134664 original size:80 final size:80
Alignment explanation
Indices: 12134533--12134793 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
12134523 CTCAAGTAAT
* * * * * * * *
12134533 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
12134596 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
12134611 CTTCGGGGCTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
12134675 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
12134691 CTTCAGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
12134756 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
12134772 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
12134794 CATTCGAATA
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 11 0.07
79 15 0.10
80 93 0.62
81 32 0.21
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:12139901 original size:43 final size:42
Alignment explanation
Indices: 12139761--12139902 Score: 167
Period size: 43 Copynumber: 3.3 Consensus size: 42
12139751 ATATCATTAT
* * * * * * *
12139761 TTTAGCGGCGTTTGTGAGAAAAGTGGCACTAAAGGTTATGATC
1 TTTAGCGGCG-TTGTGAAAAAAGCGCCGCTAAAGGTCACGGTC
*
12139804 TTTAGCGGCGTCTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGT-TGTGAAAAAAGCGCCGCTAAAGGTCACGGTC
* *
12139847 TTTAGCGGCGTTTTCGAAAATAGCGCCGCTAAAGGTCACGGTC
1 TTTAGCGGCGTTGT-GAAAAAAGCGCCGCTAAAGGTCACGGTC
12139890 TTTAGCGGCGTTG
1 TTTAGCGGCGTTG
12139903 CATATAGCGA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 3 0.03
43 84 0.97
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (42 bp):
TTTAGCGGCGTTGTGAAAAAAGCGCCGCTAAAGGTCACGGTC
Found at i:12144269 original size:11 final size:11
Alignment explanation
Indices: 12144253--12144283 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
12144243 GTCAGAAAGA
12144253 AAAATTATTTT
1 AAAATTATTTT
12144264 AAAATTATTTT
1 AAAATTATTTT
12144275 AAAATTATT
1 AAAATTATT
12144284 GTATGGTCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
AAAATTATTTT
Found at i:12145564 original size:26 final size:26
Alignment explanation
Indices: 12145535--12145592 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
12145525 CCCGTTATAT
*
12145535 GGCTCTTCATAAGCTTCTTGATTAAA
1 GGCTCTTCATAAGCTTCCTGATTAAA
** * *
12145561 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCATAAGCTTCCTGATTAAA
12145587 GGCTCT
1 GGCTCT
12145593 CTGGAGCTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (26 bp):
GGCTCTTCATAAGCTTCCTGATTAAA
Found at i:12149700 original size:5 final size:5
Alignment explanation
Indices: 12149690--12149720 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
12149680 TTAAGTATAT
12149690 TATTA TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA T
12149721 TATATATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:12149726 original size:15 final size:16
Alignment explanation
Indices: 12149687--12149727 Score: 68
Period size: 15 Copynumber: 2.7 Consensus size: 16
12149677 TAATTAAGTA
12149687 TATTATTATATTATAT
1 TATTATTATATTATAT
12149703 TA-TATTATATTATAT
1 TATTATTATATTATAT
12149718 TATTA-TATAT
1 TATTATTATAT
12149728 AAAAGAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTATTATATTATAT
Found at i:12150816 original size:12 final size:12
Alignment explanation
Indices: 12150799--12150823 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12150789 GCCGACTACT
12150799 GTTACTGTTACC
1 GTTACTGTTACC
12150811 GTTACTGTTACC
1 GTTACTGTTACC
12150823 G
1 G
12150824 ATTCGACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:12150854 original size:45 final size:45
Alignment explanation
Indices: 12150801--12150907 Score: 144
Period size: 45 Copynumber: 2.4 Consensus size: 45
12150791 CGACTACTGT
* *
12150801 TACTGTTACCGTTACTGTTACCGATTC-GACACTTTGTGTGTTGAA
1 TACTGTTACAGTTACTGTTACAGATTCAG-CACTTTGTGTGTTGAA
* * *
12150846 TATTGTTACAATTACTATTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACAGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
*
12150891 TACTGTTACTGTTACTG
1 TACTGTTACAGTTACTG
12150908 CTACTGCTAC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 51 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (45 bp):
TACTGTTACAGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
Found at i:12150922 original size:18 final size:18
Alignment explanation
Indices: 12150891--12150925 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12150881 GTGTGTTGAA
* *
12150891 TACTGTTACTGTTACTGC
1 TACTGCTACCGTTACTGC
12150909 TACTGCTACCGTTACTG
1 TACTGCTACCGTTACTG
12150926 ATTACTGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (18 bp):
TACTGCTACCGTTACTGC
Found at i:12151905 original size:4 final size:4
Alignment explanation
Indices: 12151898--12151934 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
12151888 AAAAAATATA
12151898 AAAT AAAT -AAT AAAT -AAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
12151935 AATTGGAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 6 0.19
4 25 0.81
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:12151926 original size:8 final size:8
Alignment explanation
Indices: 12151898--12151934 Score: 60
Period size: 7 Copynumber: 4.9 Consensus size: 8
12151888 AAAAAATATA
12151898 AAATAAAT
1 AAATAAAT
12151906 -AATAAAT
1 AAATAAAT
12151913 -AATAAAT
1 AAATAAAT
12151920 AAATAAAT
1 AAATAAAT
12151928 AAATAAA
1 AAATAAA
12151935 AATTGGAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 14 0.50
8 14 0.50
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAAAT
Found at i:12155794 original size:26 final size:26
Alignment explanation
Indices: 12155765--12155847 Score: 69
Period size: 26 Copynumber: 3.2 Consensus size: 26
12155755 ATATACCGTA
*
12155765 GCTCTTTGTGAGCGTCCCG-TTATATG
1 GCTCTTTGTGAGCGTCCCGATTA-AAG
* * * *
12155791 GCTCTTCGTGAACTTCCTGATTAAAG
1 GCTCTTTGTGAGCGTCCCGATTAAAG
* ** *
12155817 GCTCTTTGTGAGCTTCCTAATTAACG
1 GCTCTTTGTGAGCGTCCCGATTAAAG
12155843 GCTCT
1 GCTCT
12155848 CCAGAGCTTC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 44 0.94
27 3 0.06
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
GCTCTTTGTGAGCGTCCCGATTAAAG
Found at i:12155917 original size:24 final size:24
Alignment explanation
Indices: 12155890--12155936 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
12155880 TTCCGATATG
*
12155890 TGGCTATTCGGAGCTTCCTGTTAA
1 TGGCTATTCGGAGCTACCTGTTAA
*
12155914 TGGCTCTTCGGAGCTACCTGTTA
1 TGGCTATTCGGAGCTACCTGTTA
12155937 TTGACTTGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (24 bp):
TGGCTATTCGGAGCTACCTGTTAA
Found at i:12156563 original size:52 final size:52
Alignment explanation
Indices: 12156495--12156595 Score: 202
Period size: 52 Copynumber: 1.9 Consensus size: 52
12156485 ACTTGGTCGA
12156495 AGTCACATCACACTATCCCTTAGACTTTTCGGTATATAAAGCAAACTAAATG
1 AGTCACATCACACTATCCCTTAGACTTTTCGGTATATAAAGCAAACTAAATG
12156547 AGTCACATCACACTATCCCTTAGACTTTTCGGTATATAAAGCAAACTAA
1 AGTCACATCACACTATCCCTTAGACTTTTCGGTATATAAAGCAAACTAA
12156596 CTTTTGGTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.29
Consensus pattern (52 bp):
AGTCACATCACACTATCCCTTAGACTTTTCGGTATATAAAGCAAACTAAATG
Found at i:12157011 original size:29 final size:29
Alignment explanation
Indices: 12156966--12157021 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
12156956 ATGCCCTCAG
* * *
12156966 CCCGTGTGCAACCCTGACTTTAACCTTAT
1 CCCGTGTACAACACTGACTTAAACCTTAT
12156995 CCCGTGTACAACACTGACTTAAACCTT
1 CCCGTGTACAACACTGACTTAAACCTT
12157022 TAGGTGCAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.25, C:0.34, G:0.12, T:0.29
Consensus pattern (29 bp):
CCCGTGTACAACACTGACTTAAACCTTAT
Found at i:12161944 original size:31 final size:29
Alignment explanation
Indices: 12161896--12161978 Score: 71
Period size: 31 Copynumber: 2.8 Consensus size: 29
12161886 ATATCAAAAT
* *
12161896 TATACATGATC-TATGATTTAATGTATAATTG
1 TATACATGAACAT-TGATTTAATG--CAATTG
* *
12161927 TATACATGAACATTGATTTTATGCAATTT
1 TATACATGAACATTGATTTAATGCAATTG
12161956 TATACATGAA-ATTTTGATTTAAT
1 TATACATGAACA--TTGATTTAAT
12161979 CTACTTATTG
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
28 1 0.02
29 14 0.32
30 9 0.20
31 19 0.43
32 1 0.02
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.46
Consensus pattern (29 bp):
TATACATGAACATTGATTTAATGCAATTG
Found at i:12162886 original size:41 final size:41
Alignment explanation
Indices: 12162841--12162918 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
12162831 AGCTGTTGCT
12162841 ACCATTATCAATATGGTATCGACCACTATGTTATGTACTCA
1 ACCATTATCAATATGGTATCGACCACTATGTTATGTACTCA
12162882 ACCATTATCAATATGGTATCGACCACTATGTTATGTA
1 ACCATTATCAATATGGTATCGACCACTATGTTATGTA
12162919 GTAAACAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (41 bp):
ACCATTATCAATATGGTATCGACCACTATGTTATGTACTCA
Found at i:12162906 original size:21 final size:21
Alignment explanation
Indices: 12162841--12162906 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
12162831 AGCTGTTGCT
12162841 ACCATTATCAATATGGTATCG
1 ACCATTATCAATATGGTATCG
* ** *
12162862 ACCACTAT-GTTAT-GTACTCA
1 ACCATTATCAATATGGTA-TCG
12162882 ACCATTATCAATATGGTATCG
1 ACCATTATCAATATGGTATCG
12162903 ACCA
1 ACCA
12162907 CTATGTTATG
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
19 3 0.09
20 12 0.35
21 16 0.47
22 3 0.09
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (21 bp):
ACCATTATCAATATGGTATCG
Found at i:12164259 original size:26 final size:26
Alignment explanation
Indices: 12164207--12164259 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12164197 TGCATATTAT
*
12164207 TACTTTATAGGCTAGCTCACACTTAGA
1 TACTTTATAGGC-AGCTCACACATAGA
*
12164234 TACTTTATAGAG-AGCTCGCACATAGA
1 TACTTTATAG-GCAGCTCACACATAGA
12164260 CACCATACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 12 0.52
27 10 0.43
28 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
TACTTTATAGGCAGCTCACACATAGA
Found at i:12164444 original size:17 final size:17
Alignment explanation
Indices: 12164424--12164486 Score: 63
Period size: 17 Copynumber: 3.7 Consensus size: 17
12164414 ACATAAATCG
*
12164424 CATATAAACATAGCTCA
1 CATATAAACACAGCTCA
* * *
12164441 CATATAGAGACAGCTCG
1 CATATAAACACAGCTCA
* * *
12164458 CATATAAACGCAACTCG
1 CATATAAACACAGCTCA
12164475 CATATAAACACA
1 CATATAAACACA
12164487 CACACACACA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 37 1.00
ACGTcount: A:0.44, C:0.25, G:0.11, T:0.19
Consensus pattern (17 bp):
CATATAAACACAGCTCA
Found at i:12167775 original size:15 final size:16
Alignment explanation
Indices: 12167755--12167784 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
12167745 GAAAATTGCC
12167755 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
12167770 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
12167785 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:12172901 original size:21 final size:21
Alignment explanation
Indices: 12172875--12172916 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
12172865 AAGATATGAA
12172875 ACACCGCTACACATAAATCCC
1 ACACCGCTACACATAAATCCC
12172896 ACACCGCTACACATAAATCCC
1 ACACCGCTACACATAAATCCC
12172917 CCACTTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.43, G:0.05, T:0.14
Consensus pattern (21 bp):
ACACCGCTACACATAAATCCC
Found at i:12182035 original size:44 final size:47
Alignment explanation
Indices: 12181882--12182191 Score: 156
Period size: 47 Copynumber: 6.6 Consensus size: 47
12181872 TTGCCGCTGC
* * * * *
12181882 CATGTCCCAGACATGGTCTTACGCTGGCTATC-TCCATCGAGGCCGATCC
1 CATGTCCCAGACAT-GTCTTACACTAGCTAACAT-CATCGAGGCTGAT-G
** * * * *
12181931 CATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATACG-TGCTGGTG
1 CATGTCCCAGACAT-GTCTTACACTAGCTAACAT-CAT-CGAGGCTGATG
* *
12181980 CATATCCCAGACATGTCTTACACTAGCATGAA-A-C-T-TA-GCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-T-AACATCATCGAGGCTGATG
* * * *
12182024 CATGTCCCAGACACGTTTTACACTGGCTAACATCATCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTAACATCATCGAGGCTGATG
* * * *
12182071 CATGTCCCAGACATGTCTTACACTGGC--AC-TCACCTCTACGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTAACATCA--TCGAGGCTGATG
* * ** * * *
12182117 CCATGTCCCAGACGTGGTCTTATACGGGCTATCATGAT-GCGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTAACATCATCGAGGCTGATG
* * *
12182165 CATGTCCCAAACACGTCTTAGACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
12182192 CCTCGCCTCA
Statistics
Matches: 203, Mismatches: 41, Indels: 37
0.72 0.15 0.13
Matches are distributed among these distances:
42 2 0.01
43 2 0.01
44 33 0.16
45 3 0.01
46 22 0.11
47 55 0.27
48 30 0.15
49 44 0.22
50 8 0.04
51 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTAACATCATCGAGGCTGATG
Done.