Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 47 of 311
Found at i:13416254 original size:10 final size:10
Alignment explanation
Indices: 13416239--13416298 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
13416229 AAATTTTAGG
13416239 ATTTAT-TTT
1 ATTTATCTTT
13416248 CATTTATCTTT
1 -ATTTATCTTT
13416259 ATTTATCTTT
1 ATTTATCTTT
*
13416269 AATTATCTTT
1 ATTTATCTTT
13416279 ATTTAT-TTGT
1 ATTTATCTT-T
13416289 ATTTATCTTT
1 ATTTATCTTT
13416299 TAGAATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:13417216 original size:12 final size:12
Alignment explanation
Indices: 13417199--13417231 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
13417189 CTACTTCCCC
13417199 TTTACTATTATT
1 TTTACTATTATT
13417211 TTTACTATTATT
1 TTTACTATTATT
13417223 TTTACTATT
1 TTTACTATT
13417232 TTATAGGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTACTATTATT
Found at i:13418164 original size:10 final size:10
Alignment explanation
Indices: 13418149--13418177 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
13418139 TGCGTTTGAA
13418149 AATAAAAAAT
1 AATAAAAAAT
13418159 AATAAAAAAT
1 AATAAAAAAT
13418169 AA-AAAAAAT
1 AATAAAAAAT
13418178 TGATAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 7 0.37
10 12 0.63
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (10 bp):
AATAAAAAAT
Found at i:13418702 original size:23 final size:23
Alignment explanation
Indices: 13418676--13418719 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
13418666 TTGATTTTTA
*
13418676 AATTATTTAGTGATAATATTTGG
1 AATTATTTAATGATAATATTTGG
13418699 AATTATTTAATGATAATATTT
1 AATTATTTAATGATAATATTT
13418720 AACAAAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (23 bp):
AATTATTTAATGATAATATTTGG
Found at i:13422452 original size:45 final size:45
Alignment explanation
Indices: 13422388--13422479 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
13422378 ATGCCTGTGT
13422388 TGAACTTGGTAGGTTAGGTGAGTGTGAAGAGGTCAAAGGTTGAGG
1 TGAACTTGGTAGGTTAGGTGAGTGTGAAGAGGTCAAAGGTTGAGG
*
13422433 TGAACTTGGTAGGTTAGGTGAGTGTGAAGATGTCAAAGGTTGAGG
1 TGAACTTGGTAGGTTAGGTGAGTGTGAAGAGGTCAAAGGTTGAGG
13422478 TG
1 TG
13422480 TGGTGATGGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.26, C:0.04, G:0.41, T:0.28
Consensus pattern (45 bp):
TGAACTTGGTAGGTTAGGTGAGTGTGAAGAGGTCAAAGGTTGAGG
Found at i:13425245 original size:28 final size:28
Alignment explanation
Indices: 13425212--13425274 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
13425202 ACAATTAAGT
13425212 AATATTTTAATATT-TTAAAGAATTA-AAA
1 AATATTTTAA-ATTATTAAA-AATTATAAA
*
13425240 ATTA-TTTAAATTATTAAAAATTATAAA
1 AATATTTTAAATTATTAAAAATTATAAA
13425267 AATATTTT
1 AATATTTT
13425275 TATTCTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
26 8 0.27
27 16 0.53
28 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (28 bp):
AATATTTTAAATTATTAAAAATTATAAA
Found at i:13425249 original size:19 final size:19
Alignment explanation
Indices: 13425225--13425263 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
13425215 ATTTTAATAT
13425225 TTTAAAGAATTAAAAATTA
1 TTTAAAGAATTAAAAATTA
**
13425244 TTTAAATTATTAAAAATTA
1 TTTAAAGAATTAAAAATTA
13425263 T
1 T
13425264 AAAAATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
TTTAAAGAATTAAAAATTA
Found at i:13425262 original size:10 final size:10
Alignment explanation
Indices: 13425233--13425269 Score: 51
Period size: 9 Copynumber: 3.9 Consensus size: 10
13425223 ATTTTAAAGA
13425233 ATTAAAAATT
1 ATTAAAAATT
*
13425243 ATT-TAAATT
1 ATTAAAAATT
13425252 ATTAAAAATT
1 ATTAAAAATT
13425262 A-TAAAAAT
1 ATTAAAAAT
13425270 ATTTTTATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATTAAAAATT
Found at i:13425269 original size:19 final size:19
Alignment explanation
Indices: 13425233--13425269 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13425223 ATTTTAAAGA
**
13425233 ATTAAAAATTATTTAAATT
1 ATTAAAAATTATAAAAATT
13425252 ATTAAAAATTATAAAAAT
1 ATTAAAAATTATAAAAAT
13425270 ATTTTTATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTAAAAATTATAAAAATT
Found at i:13448814 original size:155 final size:155
Alignment explanation
Indices: 13448603--13448918 Score: 553
Period size: 155 Copynumber: 2.0 Consensus size: 155
13448593 ACCTTAAGAC
*
13448603 ATTGAATTCCTGTACTCTTTTATTTAAAAAATTTTGATCCTTTCATCCAATTTGCAATTATAAAA
1 ATTGAATTCCTGTACGCTTTTATTTAAAAAATTTTGATCCTTTCATCCAATTTGCAATTATAAAA
*
13448668 AAGACTAACTTTTTTATACCTTAATGTATATAGTTTTTAGTCAATTTAGTCCTTATTATACAATA
66 AAGACTAACTTTTTTATACCTTAATGTATATAGTTTTTAGTCAATTTAGTCCTTATTATAAAATA
13448733 TGATTATCGAAAAGAACTTTTTAAA
131 TGATTATCGAAAAGAACTTTTTAAA
*
13448758 ATTGAATTCCTGTACGCTTTTATTTAAAAAAATTTT-ATCCTTTCGTCCAATTTGCAATTATAAA
1 ATTGAATTCCTGTACGCTTTTATTT-AAAAAATTTTGATCCTTTCATCCAATTTGCAATTATAAA
* *
13448822 AAAGACTAACTTTTTTATACCTTCATGTGTATAGTTTTTAGTCAATTTAGTCCTTATTATAAAAT
65 AAAGACTAACTTTTTTATACCTTAATGTATATAGTTTTTAGTCAATTTAGTCCTTATTATAAAAT
* *
13448887 ATGATTGTCTAAAAGAACTTTTTAAA
130 ATGATTATCGAAAAGAACTTTTTAAA
13448913 ATTGAA
1 ATTGAA
13448919 GTGACAATTG
Statistics
Matches: 153, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
155 143 0.93
156 10 0.07
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.44
Consensus pattern (155 bp):
ATTGAATTCCTGTACGCTTTTATTTAAAAAATTTTGATCCTTTCATCCAATTTGCAATTATAAAA
AAGACTAACTTTTTTATACCTTAATGTATATAGTTTTTAGTCAATTTAGTCCTTATTATAAAATA
TGATTATCGAAAAGAACTTTTTAAA
Found at i:13449250 original size:85 final size:85
Alignment explanation
Indices: 13449107--13449277 Score: 288
Period size: 85 Copynumber: 2.0 Consensus size: 85
13449097 AATATAACCG
*
13449107 ACATTATACCTCGAATCTAACATTGTCAAAAATTTATTACCAAAGTAGTCTTACATTCCTTGAAC
1 ACATTATACCTCAAATCTAACATTGTCAAAAATTTATTACCAAAGTAGTCTTACATTCCTTGAAC
13449172 CAAATGCACACTAATAGTAA
66 CAAATGCACACTAATAGTAA
** *
13449192 ACATTATACCTCAAATCTAACATTGTCATGATTTTATTACCAAAGTAGTCTTACATTCCTTGAAC
1 ACATTATACCTCAAATCTAACATTGTCAAAAATTTATTACCAAAGTAGTCTTACATTCCTTGAAC
* *
13449257 CAAATGTACTCTAATAGTAA
66 CAAATGCACACTAATAGTAA
13449277 A
1 A
13449278 ATGGCCCTTA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (85 bp):
ACATTATACCTCAAATCTAACATTGTCAAAAATTTATTACCAAAGTAGTCTTACATTCCTTGAAC
CAAATGCACACTAATAGTAA
Found at i:13451723 original size:8 final size:9
Alignment explanation
Indices: 13451699--13451723 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
13451689 AACATAATAT
13451699 ATTAAAAAC
1 ATTAAAAAC
13451708 ATTAAAAAC
1 ATTAAAAAC
13451717 ATTAAAA
1 ATTAAAA
13451724 TAAATATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
ATTAAAAAC
Found at i:13451867 original size:14 final size:14
Alignment explanation
Indices: 13451833--13451895 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 14
13451823 TAAAATTAAC
13451833 AATAA-AATAA-AA
1 AATAATAATAACAA
* * *
13451845 ATTATATAATATCCA
1 AATA-ATAATAACAA
13451860 AATAATAATAACAA
1 AATAATAATAACAA
* *
13451874 AATAGTAATAACAT
1 AATAATAATAACAA
13451888 AATAATAA
1 AATAATAA
13451896 AATGTCAGTA
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
12 3 0.08
13 1 0.03
14 31 0.79
15 4 0.10
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (14 bp):
AATAATAATAACAA
Found at i:13461234 original size:18 final size:17
Alignment explanation
Indices: 13461213--13461246 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
13461203 TTAAAAAATC
*
13461213 ATATTTTTTTTACATTTA
1 ATATATTTTTTA-ATTTA
13461231 ATATATTTTTTAATTT
1 ATATATTTTTTAATTT
13461247 CAAAATACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
ATATATTTTTTAATTTA
Found at i:13462939 original size:21 final size:21
Alignment explanation
Indices: 13462915--13462958 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
13462905 AAAAAGCTAA
*
13462915 CAAATCTCTCTAAGACTTAAT
1 CAAATCTCCCTAAGACTTAAT
13462936 CAAATCTCCCTAAGACTTAAT
1 CAAATCTCCCTAAGACTTAAT
13462957 CA
1 CA
13462959 TAATATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.27, G:0.05, T:0.30
Consensus pattern (21 bp):
CAAATCTCCCTAAGACTTAAT
Found at i:13464589 original size:6 final size:6
Alignment explanation
Indices: 13464578--13464604 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
13464568 GCTTTGCTGC
13464578 TTGGAG TTGGAG TTGGAG TTGGAG TTG
1 TTGGAG TTGGAG TTGGAG TTGGAG TTG
13464605 AGGTTAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.48, T:0.37
Consensus pattern (6 bp):
TTGGAG
Found at i:13474088 original size:27 final size:26
Alignment explanation
Indices: 13474033--13474090 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
13474023 ATTTTATTTT
*
13474033 TATTTTTAAAATTATTTAAAATATTA
1 TATTTTTAAAATTATTTAAAATATAA
13474059 TATTTTTAAATATTATTTAAACATA-AA
1 TATTTTTAAA-ATTATTTAAA-ATATAA
13474086 TATTT
1 TATTT
13474091 AATTATTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 10 0.34
27 16 0.55
28 3 0.10
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
TATTTTTAAAATTATTTAAAATATAA
Found at i:13474091 original size:25 final size:26
Alignment explanation
Indices: 13474037--13474097 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
13474027 TATTTTTATT
*
13474037 TTTAAA-ATTATTTAAAATATTATATT
1 TTTAAATATTATTTAAAATA-TATATA
13474063 TTTAAATATTATTTAAACATA-A-ATA
1 TTTAAATATTATTTAAA-ATATATATA
*
13474088 TTTAATTATT
1 TTTAAATATT
13474098 TATATTTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 11 0.35
26 7 0.23
27 10 0.32
28 3 0.10
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (26 bp):
TTTAAATATTATTTAAAATATATATA
Found at i:13474184 original size:13 final size:14
Alignment explanation
Indices: 13474168--13474209 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
13474158 TTTCAATTTT
13474168 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
13474181 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
13474196 ATTTTAAATAATAT
1 ATTTT-AATAATAT
13474210 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:13474194 original size:16 final size:16
Alignment explanation
Indices: 13474172--13474208 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
13474162 AATTTTATTT
13474172 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
13474189 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
13474204 TAATA
1 TAATA
13474209 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:13474261 original size:15 final size:15
Alignment explanation
Indices: 13474241--13474297 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
13474231 ATTCAATATT
13474241 AATATTTTAATAATA
1 AATATTTTAATAATA
*
13474256 AATATTTATTAAAATTATA
1 AATA-TT-TT--AATAATA
*
13474275 AATATATTAATAATA
1 AATATTTTAATAATA
*
13474290 AATGTTTT
1 AATATTTT
13474298 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:13475597 original size:23 final size:23
Alignment explanation
Indices: 13475571--13475616 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
13475561 AGTCATTTCT
*
13475571 TAATAAATATGTAGTTTGTATAG
1 TAATAAATATGTAGCTTGTATAG
13475594 TAATAAATATGTAGCTTGTATAG
1 TAATAAATATGTAGCTTGTATAG
13475617 ATAACATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.41
Consensus pattern (23 bp):
TAATAAATATGTAGCTTGTATAG
Found at i:13482051 original size:19 final size:20
Alignment explanation
Indices: 13482029--13482066 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
13482019 TAATATTAAT
13482029 TTTTAAATAATT-TTTTATA
1 TTTTAAATAATTATTTTATA
*
13482048 TTTTAATTAATTATTTTAT
1 TTTTAAATAATTATTTTAT
13482067 TAAAACTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTAAATAATTATTTTATA
Found at i:13482245 original size:18 final size:19
Alignment explanation
Indices: 13482216--13482255 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
13482206 ATAAATACAC
13482216 TAAATAAATAATACAAAG-A
1 TAAATAAATAATA-AAAGTA
13482235 TAAAT-AATAATAAAAGTA
1 TAAATAAATAATAAAAGTA
13482253 TAA
1 TAA
13482256 TTGCTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.25
Consensus pattern (19 bp):
TAAATAAATAATAAAAGTA
Found at i:13482968 original size:3 final size:3
Alignment explanation
Indices: 13482960--13483008 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
13482950 ACATAAACTC
13482960 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13483008 T
1 T
13483009 TGATTCAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13485582 original size:90 final size:90
Alignment explanation
Indices: 13485467--13485645 Score: 304
Period size: 90 Copynumber: 2.0 Consensus size: 90
13485457 GAATTCTTTA
* *
13485467 AATTAATGAATCTTCTAGTTCTTTAATAAATGTCCATATGAATTCTCAATTAATTTTCGCATCAT
1 AATTAAGGAAACTTCTAGTTCTTTAATAAATGTCCATATGAATTCTCAATTAATTTTCGCATCAT
*
13485532 ATATGATCTAGGATGGTCTAACTGC
66 ATATGATCCAGGATGGTCTAACTGC
* * *
13485557 AATTAAGGAAACTTCTAGTTCTTTAATAAATGTCCATATGGATTTTTAATTAATTTTCGCATCAT
1 AATTAAGGAAACTTCTAGTTCTTTAATAAATGTCCATATGAATTCTCAATTAATTTTCGCATCAT
13485622 ATATGATCCAGGATGGTCTAACTG
66 ATATGATCCAGGATGGTCTAACTG
13485646 GTCACGCCAA
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (90 bp):
AATTAAGGAAACTTCTAGTTCTTTAATAAATGTCCATATGAATTCTCAATTAATTTTCGCATCAT
ATATGATCCAGGATGGTCTAACTGC
Found at i:13492769 original size:18 final size:18
Alignment explanation
Indices: 13492748--13492787 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
13492738 TATTATTATT
13492748 TTTAATTATAAAAAATAA
1 TTTAATTATAAAAAATAA
* * *
13492766 TTTAATTTTTAATAATAA
1 TTTAATTATAAAAAATAA
13492784 TTTA
1 TTTA
13492788 GGATTAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTAATTATAAAAAATAA
Found at i:13493428 original size:20 final size:21
Alignment explanation
Indices: 13493405--13493443 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
13493395 TGGTTGATAG
*
13493405 GTTT-TAAAATTATTTTTTTC
1 GTTTATAAAATGATTTTTTTC
13493425 GTTTATAAAATGATTTTTT
1 GTTTATAAAATGATTTTTT
13493444 ATGTAAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.62
Consensus pattern (21 bp):
GTTTATAAAATGATTTTTTTC
Found at i:13498959 original size:19 final size:19
Alignment explanation
Indices: 13498935--13498972 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
13498925 CATTGAAATT
*
13498935 TAATAATCTTTAGTAAAAA
1 TAATAATCTTTAATAAAAA
*
13498954 TAATAATGTTTAATAAAAA
1 TAATAATCTTTAATAAAAA
13498973 AATGTCAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (19 bp):
TAATAATCTTTAATAAAAA
Found at i:13500975 original size:16 final size:16
Alignment explanation
Indices: 13500949--13500988 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
13500939 ACATAGTGAC
* *
13500949 GACAT-GAAAAATGTT
1 GACATGGAAAAAAGAT
13500964 GACATGGAAAAAAGAT
1 GACATGGAAAAAAGAT
13500980 GACATGGAA
1 GACATGGAA
13500989 GGTTTAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.50, C:0.07, G:0.25, T:0.17
Consensus pattern (16 bp):
GACATGGAAAAAAGAT
Found at i:13509236 original size:11 final size:11
Alignment explanation
Indices: 13509220--13509252 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
13509210 TTTTGTCTCA
13509220 CGCTACAGTAT
1 CGCTACAGTAT
13509231 CGCTACAGTAT
1 CGCTACAGTAT
13509242 CGCTACAGTAT
1 CGCTACAGTAT
13509253 TTAATCTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (11 bp):
CGCTACAGTAT
Found at i:13517124 original size:27 final size:27
Alignment explanation
Indices: 13517083--13517171 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
13517073 ATACATACAT
* * * *
13517083 GTTGTGCCTACCTGATAGGCTCAACTA
1 GTTGAGCCTATCTGATAGGCACGACTA
*
13517110 GTTGAGCCTATCTGACAGGCACGACTA
1 GTTGAGCCTATCTGATAGGCACGACTA
* *
13517137 GTTGTGCCT-TCTTGGTAGGCACGACTA
1 GTTGAGCCTATC-TGATAGGCACGACTA
*
13517164 GTGGAGCC
1 GTTGAGCC
13517172 CACATACCTA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.04
27 49 0.96
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (27 bp):
GTTGAGCCTATCTGATAGGCACGACTA
Found at i:13520793 original size:33 final size:32
Alignment explanation
Indices: 13520740--13520855 Score: 88
Period size: 33 Copynumber: 3.5 Consensus size: 32
13520730 GAACATAAAT
* * *
13520740 GAGTAGAATATGGAGGTGGATATGGGCCGGGAG
1 GAGTAGAGTACGGAGATGGATA-GGGCCGGGAG
* * *
13520773 GAGTAGAGTACGGCGATGGATACGGCTCTGGAG
1 GAGTAGAGTACGGAGATGGATAGGGC-CGGGAG
* * * * * *
13520806 GAGTTGAGTACGTAGGTGGATACGAGTCGGAAG
1 GAGTAGAGTACGGAGATGGATA-GGGCCGGGAG
*
13520839 GAGTAGAGTACTGAGAT
1 GAGTAGAGTACGGAGAT
13520856 AAATATGAGC
Statistics
Matches: 62, Mismatches: 19, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
32 3 0.05
33 58 0.94
34 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.43, T:0.20
Consensus pattern (32 bp):
GAGTAGAGTACGGAGATGGATAGGGCCGGGAG
Found at i:13521705 original size:15 final size:16
Alignment explanation
Indices: 13521685--13521716 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
13521675 ATATATAATA
13521685 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
13521700 ATATAAAAATTACATT
1 ATATAAAAATTACATT
13521716 A
1 A
13521717 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:13521981 original size:114 final size:115
Alignment explanation
Indices: 13521774--13522215 Score: 589
Period size: 112 Copynumber: 3.9 Consensus size: 115
13521764 ATACTAACAC
* * * * *
13521774 AAAATAACGATAAAATTATTTTTTT-AAATACATTACTTAAAAAAAAATCACAATACATTAATAC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTAC--AAAAAAAAATCACAATACACTAAT--
*
13521838 ACACTAAACCACTAAACACTAAC-AA-TATATAACCTAATATTAAATTACTAAT
62 ACACTAAACCACTAAACACTAACAAATTATATAACCTAATCTTAAATTACTAAT
*
13521890 AAAATAGCTATAAAAATATTTTTTTAAAATATATGACAAAAAAAAAT-ACAATACACTAATACAC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACAAAAAAAAATCACAATACACTAATACAC
*
13521954 TAAACCACTAAACACTAATAAATTATATAACCTAATCTTAAATTACTAAT
66 TAAACCACTAAACACTAACAAATTATATAACCTAATCTTAAATTACTAAT
* * *
13522004 AAAATAGCTATAAAAATATTTTTTTAAAATATATTAC-TAAAAAAATTACAATACGCTAAT--AC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACAAAAAAAAATCACAATACACTAATACAC
* * *
13522066 TAAACCACTAAATACGAACAATTTATATAACCTAATCTTAAATTACTAAT
66 TAAACCACTAAACACTAACAAATTATATAACCTAATCTTAAATTACTAAT
* *
13522116 AAAATAGCTAT-AAAATTTTTTTTTAAAAATATATTAC--TAAAAAATCACAATACACTAATACA
1 AAAATAGCTATAAAAATATTTTTTT-AAAATATATTACAAAAAAAAATCACAATACACTAATACA
* * * *
13522178 CTAAACTACTAAAAACTAACAATTTATATAACCAAATC
65 CTAAACCACTAAACACTAACAAATTATATAACCTAATC
13522216 AACTATAATT
Statistics
Matches: 296, Mismatches: 23, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
111 31 0.10
112 93 0.31
113 45 0.15
114 86 0.29
115 10 0.03
116 22 0.07
117 9 0.03
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.31
Consensus pattern (115 bp):
AAAATAGCTATAAAAATATTTTTTTAAAATATATTACAAAAAAAAATCACAATACACTAATACAC
TAAACCACTAAACACTAACAAATTATATAACCTAATCTTAAATTACTAAT
Found at i:13522075 original size:112 final size:113
Alignment explanation
Indices: 13521774--13522215 Score: 572
Period size: 114 Copynumber: 3.9 Consensus size: 113
13521764 ATACTAACAC
* * * * * *
13521774 AAAATAACGATAAAATTATTTTTTT-AAATACATTACTTAAAAAAAAATCACAATACATTAATAC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTAC-T--AAAAAAATTACAATACACTAAT--
*
13521838 ACACTAAACCACTAAACACTAAC-AA-TATATAACCTAATATTAAATTACTAAT
61 A-ACTAAACCACTAAACACTAACAAATTATATAACCTAATCTTAAATTACTAAT
* * *
13521890 AAAATAGCTATAAAAATATTTTTTTAAAATATATGACAAAAAAAAATACAATACACTAATACACT
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACACTAATA-ACT
*
13521955 AAACCACTAAACACTAATAAATTATATAACCTAATCTTAAATTACTAAT
65 AAACCACTAAACACTAACAAATTATATAACCTAATCTTAAATTACTAAT
*
13522004 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACGCTAAT-ACTA
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACACTAATAACTA
* * *
13522068 AACCACTAAATACGAACAATTTATATAACCTAATCTTAAATTACTAAT
66 AACCACTAAACACTAACAAATTATATAACCTAATCTTAAATTACTAAT
* *
13522116 AAAATAGCTAT-AAAATTTTTTTTTAAAAATATATTACT-AAAAAATCACAATACACTAATACAC
1 AAAATAGCTATAAAAATATTTTTTT-AAAATATATTACTAAAAAAATTACAATACACTAATA-AC
* * * *
13522179 TAAACTACTAAAAACTAACAATTTATATAACCAAATC
64 TAAACCACTAAACACTAACAAATTATATAACCTAATC
13522216 AACTATAATT
Statistics
Matches: 294, Mismatches: 26, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
111 31 0.11
112 94 0.32
113 37 0.13
114 101 0.34
116 22 0.07
117 9 0.03
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.31
Consensus pattern (113 bp):
AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACACTAATAACTA
AACCACTAAACACTAACAAATTATATAACCTAATCTTAAATTACTAAT
Found at i:13522528 original size:22 final size:22
Alignment explanation
Indices: 13522486--13522528 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
13522476 CCTTTTTTTT
* *
13522486 CTTCTTCTTCCTTCTTCTTCTC
1 CTTCTCCTTCCTTCCTCTTCTC
13522508 CTTCTCCTTCCTCTCCT-TTCT
1 CTTCTCCTTCCT-TCCTCTTCT
13522529 TTCTCACCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (22 bp):
CTTCTCCTTCCTTCCTCTTCTC
Found at i:13532671 original size:19 final size:19
Alignment explanation
Indices: 13532647--13532686 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
13532637 ATTAATTTTG
13532647 ATCAAATAAAATT-AAATTA
1 ATCAAAT-AAATTAAAATTA
13532666 ATCAAATAAATTAAAATTA
1 ATCAAATAAATTAAAATTA
13532685 AT
1 AT
13532687 ATGGTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
ATCAAATAAATTAAAATTA
Found at i:13544939 original size:27 final size:27
Alignment explanation
Indices: 13544901--13544956 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
13544891 TTAAGAAAGA
13544901 CTTAATCACCCACAGAATACTCGATAT
1 CTTAATCACCCACAGAATACTCGATAT
* ** *
13544928 CTTAGTCACCCATGGAATACTTGATAT
1 CTTAATCACCCACAGAATACTCGATAT
13544955 CT
1 CT
13544957 CTCCTCTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.27, G:0.11, T:0.30
Consensus pattern (27 bp):
CTTAATCACCCACAGAATACTCGATAT
Found at i:13550620 original size:31 final size:31
Alignment explanation
Indices: 13550585--13550645 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
13550575 AACATCCCTT
*
13550585 TGACTTAAATAAATATTTTTGAATAGTTTAG
1 TGACTTAAATAAATACTTTTGAATAGTTTAG
* *
13550616 TGACTTAAATGAATACTTTTGAATATTTTA
1 TGACTTAAATAAATACTTTTGAATAGTTTA
13550646 ATTACCATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (31 bp):
TGACTTAAATAAATACTTTTGAATAGTTTAG
Found at i:13551572 original size:29 final size:31
Alignment explanation
Indices: 13551500--13551575 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 31
13551490 AGTATAGAAA
*
13551500 TGGTCACTAAAGTATTAACTGTATTCTATTT
1 TGGTCACTAAACTATTAACTGTATTCTATTT
* * * *
13551531 TGGTTACTGAACTTTTAA-T-TTTTCTATTT
1 TGGTCACTAAACTATTAACTGTATTCTATTT
13551560 TGGTCACTAAACTATT
1 TGGTCACTAAACTATT
13551576 CAAAATTCAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 22 0.59
30 1 0.03
31 14 0.38
ACGTcount: A:0.26, C:0.13, G:0.12, T:0.49
Consensus pattern (31 bp):
TGGTCACTAAACTATTAACTGTATTCTATTT
Found at i:13553639 original size:5 final size:5
Alignment explanation
Indices: 13553629--13553653 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
13553619 TTAAATATAA
13553629 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
13553654 ATAGCAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:13563276 original size:26 final size:25
Alignment explanation
Indices: 13563235--13563292 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 25
13563225 TTCAAAAGAA
13563235 AAAAATACTATTAATATCAAATAAT
1 AAAAATACTATTAATATCAAATAAT
* *
13563260 AAAAATATTATTAAATATTAAATAAT
1 AAAAATACTATT-AATATCAAATAAT
*
13563286 AATAATA
1 AAAAATA
13563293 AATAATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 11 0.38
26 18 0.62
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (25 bp):
AAAAATACTATTAATATCAAATAAT
Found at i:13563280 original size:7 final size:7
Alignment explanation
Indices: 13563253--13563301 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
13563243 TATTAATATC
13563253 AAATAAT
1 AAATAAT
13563260 AAA-AAT
1 AAATAAT
* *
13563266 -ATTATT
1 AAATAAT
*
13563272 AAATATT
1 AAATAAT
13563279 AAATAAT
1 AAATAAT
13563286 -AATAAT
1 AAATAAT
13563292 AAATAAT
1 AAATAAT
13563299 AAA
1 AAA
13563302 AGTAGAACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 1 0.03
6 11 0.31
7 23 0.66
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (7 bp):
AAATAAT
Found at i:13569406 original size:14 final size:14
Alignment explanation
Indices: 13569387--13569414 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13569377 TTGGAACAGA
13569387 AGTAAGGCTTCTTT
1 AGTAAGGCTTCTTT
13569401 AGTAAGGCTTCTTT
1 AGTAAGGCTTCTTT
13569415 CCACAGTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (14 bp):
AGTAAGGCTTCTTT
Found at i:13570812 original size:30 final size:30
Alignment explanation
Indices: 13570776--13570861 Score: 102
Period size: 30 Copynumber: 2.9 Consensus size: 30
13570766 AAGAGCAGTA
* *
13570776 ATAAAGGAGCTGTTGTTGCATGGAACAGCC
1 ATAAAGGAGCTGCTGGTGCATGGAACAGCC
**
13570806 ATAAAGGAGCTGCTGGTGCATGGAACA-AA
1 ATAAAGGAGCTGCTGGTGCATGGAACAGCC
* *
13570835 ATTAAAGGGGCTGCTAGTGCATGGAAC
1 A-TAAAGGAGCTGCTGGTGCATGGAAC
13570862 GACATTTAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
29 1 0.02
30 48 0.98
ACGTcount: A:0.33, C:0.15, G:0.31, T:0.21
Consensus pattern (30 bp):
ATAAAGGAGCTGCTGGTGCATGGAACAGCC
Found at i:13573131 original size:12 final size:11
Alignment explanation
Indices: 13573116--13573176 Score: 50
Period size: 12 Copynumber: 5.0 Consensus size: 11
13573106 AAAAGCATTT
13573116 GAAAGAAGAAAA
1 GAAA-AAGAAAA
*
13573128 GAAAAAGAAATT
1 GAAAAAGAAA-A
13573140 GAAAAAGAAAA
1 GAAAAAGAAAA
*
13573151 TAAGAATGAGAAAAA
1 GAA-AA--AG-AAAA
13573166 GAAAAAGAAAA
1 GAAAAAGAAAA
13573177 ATGAGATTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
11 12 0.30
12 18 0.45
14 4 0.10
15 6 0.15
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.07
Consensus pattern (11 bp):
GAAAAAGAAAA
Found at i:13573132 original size:24 final size:23
Alignment explanation
Indices: 13573104--13573195 Score: 75
Period size: 24 Copynumber: 4.0 Consensus size: 23
13573094 TAATAAAATC
* *
13573104 GAAAAAGCATTTGAAAGAAGAAAA
1 GAAAAAGAAATTGAAA-AAGAAAA
13573128 GAAAAAGAAATTGAAAAAG--AA
1 GAAAAAGAAATTGAAAAAGAAAA
* *
13573149 -AATAAG-AATGAGAAAAAGAAAAA
1 GAAAAAGAAAT-TGAAAAAG-AAAA
*
13573172 GAAAAATGAGATTGAAAAAGAAAA
1 GAAAAA-GAAATTGAAAAAGAAAA
13573196 AGAACTTGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
19 3 0.06
20 12 0.22
21 2 0.04
23 5 0.09
24 22 0.41
25 8 0.15
26 2 0.04
ACGTcount: A:0.68, C:0.01, G:0.20, T:0.11
Consensus pattern (23 bp):
GAAAAAGAAATTGAAAAAGAAAA
Found at i:13573146 original size:26 final size:26
Alignment explanation
Indices: 13573126--13573199 Score: 69
Period size: 26 Copynumber: 2.9 Consensus size: 26
13573116 GAAAGAAGAA
**
13573126 AAGAAAAAGAAATTGAAAAAGAAAAT
1 AAGAAAAAGAAAAAGAAAAAGAAAAT
**
13573152 AAGAATGAGAAAAAGAAAAAGAAAA-
1 AAGAAAAAGAAAAAGAAAAAGAAAAT
* * **
13573177 ATGAGATTGAAAAAGAAAAAGAA
1 AAGAAAAAGAAAAAGAAAAAGAA
13573200 CTTGATCAAG
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 18 0.46
26 21 0.54
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.09
Consensus pattern (26 bp):
AAGAAAAAGAAAAAGAAAAAGAAAAT
Found at i:13573171 original size:21 final size:20
Alignment explanation
Indices: 13573140--13573182 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
13573130 AAAAGAAATT
* *
13573140 GAAAAAGAAAATAAGAATGA
1 GAAAAAGAAAAGAAAAATGA
13573160 GAAAAAGAAAAAGAAAAATGA
1 GAAAAAG-AAAAGAAAAATGA
13573181 GA
1 GA
13573183 TTGAAAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.07
Consensus pattern (20 bp):
GAAAAAGAAAAGAAAAATGA
Found at i:13573176 original size:5 final size:6
Alignment explanation
Indices: 13573124--13573199 Score: 62
Period size: 6 Copynumber: 12.2 Consensus size: 6
13573114 TTGAAAGAAG
** **
13573124 AAAAGA AAAAGA AATTGA AAAAGAA AATAAGA ATGAGA AAAAGA AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAAG-A AA-AAGA AAAAGA AAAAGA AAAAGA
* **
13573174 AAAATGA GATTGA AAAAGA AAAAGA A
1 AAAA-GA AAAAGA AAAAGA AAAAGA A
13573200 CTTGATCAAG
Statistics
Matches: 53, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
6 42 0.79
7 8 0.15
8 3 0.06
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.09
Consensus pattern (6 bp):
AAAAGA
Found at i:13581791 original size:20 final size:21
Alignment explanation
Indices: 13581748--13581793 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
13581738 ACTGTTTTGT
13581748 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
13581768 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
13581787 TATGGGC
1 TATGGGC
13581794 AAGGCCCAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:13581862 original size:60 final size:60
Alignment explanation
Indices: 13581786--13581934 Score: 178
Period size: 60 Copynumber: 2.5 Consensus size: 60
13581776 AACTGTGTTA
* * *
13581786 ATATGGGCAAGGCCCAGTATATATC-GA-CTTGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAGTATA-ATCTGATATTGTAA-AGGGCTACGGCCCAGATTAATACTG
* * * *
13581846 ATATGGGCTAGGCCCAGTATACTCTGATATTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAGTATAATCTGATATTGTAAAGGGCTACGGCCCAGATTAATACTG
13581906 ATATGGGCTAAGGCCCAGT-TAACTCTGAT
1 ATATGGGCT-AGGCCCAGTATAA-TCTGAT
13581935 TTTTGAATAG
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
59 2 0.03
60 54 0.70
61 21 0.27
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAGTATAATCTGATATTGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:13581913 original size:28 final size:27
Alignment explanation
Indices: 13581822--13581927 Score: 81
Period size: 28 Copynumber: 3.7 Consensus size: 27
13581812 ACTTGTAATA
* *
13581822 GGGCTACGGCCCAGATTGATACTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
* *
13581850 GGGCTAGGCCCAGTATACTCTGATATTG-TAAG
1 GGGCTAGGCCCAG---A-T-TAATATTGAT-AT
13581882 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
13581910 GGGCTAAGGCCCAG-TTAA
1 GGGCT-AGGCCCAGATTAA
13581928 CTCTGATTTT
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
27 11 0.17
28 26 0.40
29 3 0.05
30 2 0.03
31 2 0.03
32 14 0.22
33 7 0.11
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATATTGATAT
Found at i:13589184 original size:3 final size:3
Alignment explanation
Indices: 13589176--13589209 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
13589166 AGAAATAGTA
*
13589176 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
13589210 GAGTTTGAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:13593007 original size:20 final size:19
Alignment explanation
Indices: 13592984--13593100 Score: 110
Period size: 20 Copynumber: 5.8 Consensus size: 19
13592974 AGTTCGTTCA
*
13592984 TATAACTAGTAGTTCATCTG
1 TATAAC-AGTAATTCATCTG
13593004 TATAACCAGTAATTCATCTG
1 TATAA-CAGTAATTCATCTG
* *
13593024 TAATAACAGTAATTTATCTA
1 T-ATAACAGTAATTCATCTG
* *
13593044 TATCAACAATAATTCATCCG
1 TAT-AACAGTAATTCATCTG
13593064 TATCAACAGTAATTCATTCAT-
1 TAT-AACAGTAATTCA-TC-TG
*
13593085 TTTAACAGTAATTCAT
1 TATAACAGTAATTCAT
13593101 TCATTTCAAT
Statistics
Matches: 82, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
19 3 0.04
20 70 0.85
21 9 0.11
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (19 bp):
TATAACAGTAATTCATCTG
Found at i:13593097 original size:40 final size:40
Alignment explanation
Indices: 13593010--13593131 Score: 131
Period size: 40 Copynumber: 3.0 Consensus size: 40
13593000 TCTGTATAAC
* * *
13593010 CAGTAATTCATCTGTAAT-AACAGTAATTTA-TCTATATCAA
1 CAGTAATTCATCCGT-ATCAACAGTAATTCATTC-ATTTCAA
* *
13593050 CAATAATTCATCCGTATCAACAGTAATTCATTCATTTTAA
1 CAGTAATTCATCCGTATCAACAGTAATTCATTCATTTCAA
* * * *
13593090 CAGTAATTCATTCATTTCAATAGTAATTCATTCATTTCAA
1 CAGTAATTCATCCGTATCAACAGTAATTCATTCATTTCAA
13593130 CA
1 CA
13593132 TAGCTTATTC
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.03
40 65 0.94
41 2 0.03
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.39
Consensus pattern (40 bp):
CAGTAATTCATCCGTATCAACAGTAATTCATTCATTTCAA
Found at i:13593101 original size:20 final size:20
Alignment explanation
Indices: 13593028--13593131 Score: 120
Period size: 20 Copynumber: 5.2 Consensus size: 20
13593018 CATCTGTAAT
* *
13593028 AACAGTAATTTA-TCTATATC
1 AACAGTAATTCATTC-ATTTC
* * * *
13593048 AACAATAATTCATCCGTATC
1 AACAGTAATTCATTCATTTC
*
13593068 AACAGTAATTCATTCATTTT
1 AACAGTAATTCATTCATTTC
13593088 AACAGTAATTCATTCATTTC
1 AACAGTAATTCATTCATTTC
*
13593108 AATAGTAATTCATTCATTTC
1 AACAGTAATTCATTCATTTC
13593128 AACA
1 AACA
13593132 TAGCTTATTC
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
20 70 0.99
21 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.38
Consensus pattern (20 bp):
AACAGTAATTCATTCATTTC
Found at i:13593327 original size:23 final size:22
Alignment explanation
Indices: 13593295--13593381 Score: 77
Period size: 23 Copynumber: 3.7 Consensus size: 22
13593285 CCTAAGCTGA
*
13593295 TAAACAGTAAGCTCTATTGAGC
1 TAAACAGTAAGCTCTATCGAGC
* *
13593317 TGAAACGGTAAGCCCTATCGAGC
1 T-AAACAGTAAGCTCTATCGAGC
*
13593340 TAAACAATAAGCTCT-TACGAGC
1 TAAACAGTAAGCTCTAT-CGAGC
13593362 TGAAATATCAGTAAGCTCTA
1 T--AA-A-CAGTAAGCTCTA
13593382 CAAACTGTGG
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
21 1 0.02
22 18 0.35
23 19 0.37
24 2 0.04
25 1 0.02
26 10 0.20
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (22 bp):
TAAACAGTAAGCTCTATCGAGC
Found at i:13594222 original size:29 final size:29
Alignment explanation
Indices: 13594189--13594246 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
13594179 ACAAAATCAC
13594189 TTTGTAAAATATGTAAAACTATCATCTAA
1 TTTGTAAAATATGTAAAACTATCATCTAA
13594218 TTTGTAAAATATGTAAAACTATCATCTAA
1 TTTGTAAAATATGTAAAACTATCATCTAA
13594247 CTTCCATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (29 bp):
TTTGTAAAATATGTAAAACTATCATCTAA
Found at i:13599283 original size:20 final size:20
Alignment explanation
Indices: 13599255--13599400 Score: 61
Period size: 20 Copynumber: 7.3 Consensus size: 20
13599245 ATTCAGTTTT
*
13599255 ATTCGTATAAACTGTAATTC
1 ATTCATATAAACTGTAATTC
*
13599275 ATTCATAT-AACTAGTAGTTC
1 ATTCATATAAACT-GTAATTC
*
13599295 A-TC-TGTATAACTAGTAATTC
1 ATTCATATA-AACT-GTAATTC
* * * *
13599315 ATCCGTA-ATAACAGTAATTT
1 ATTCATATA-AACTGTAATTC
* **
13599335 A-TCTATATCAACAATAATTC
1 ATTC-ATATAAACTGTAATTC
* * *
13599355 ATTCGTATCAACAGTAATTC
1 ATTCATATAAACTGTAATTC
* *
13599375 ATTCATTTCAA-TAGTAATTC
1 ATTCATATAAACT-GTAATTC
13599395 ATTCAT
1 ATTCAT
13599401 TTCAACATAG
Statistics
Matches: 99, Mismatches: 18, Indels: 18
0.73 0.13 0.13
Matches are distributed among these distances:
18 2 0.02
19 7 0.07
20 81 0.82
21 8 0.08
22 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (20 bp):
ATTCATATAAACTGTAATTC
Found at i:13599314 original size:40 final size:40
Alignment explanation
Indices: 13599259--13599400 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
13599249 AGTTTTATTC
* *
13599259 GTATAAACT-GTAATTCATTCATATAACTAGTAGTTCATCT
1 GTATCAACTAGTAATTCATTCATATAAC-AGTAATTCATCT
* * *
13599299 GTAT-AACTAGTAATTCATCCGTAATAACAGTAATTTATCT
1 GTATCAACTAGTAATTCATTCAT-ATAACAGTAATTCATCT
* * *
13599339 ATATCAAC-AATAATTCATTCGTATCAACAGTAATTCATTCAT
1 GTATCAACTAGTAATTCATTCATAT-AACAGTAATTCA-TC-T
13599381 -T-TCAA-TAGTAATTCATTCAT
1 GTATCAACTAGTAATTCATTCAT
13599401 TTCAACATAG
Statistics
Matches: 85, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
39 6 0.07
40 67 0.79
41 11 0.13
42 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (40 bp):
GTATCAACTAGTAATTCATTCATATAACAGTAATTCATCT
Found at i:13599401 original size:20 final size:20
Alignment explanation
Indices: 13599324--13599407 Score: 98
Period size: 20 Copynumber: 4.2 Consensus size: 20
13599314 CATCCGTAAT
* *
13599324 AACAGTAATTTA-TCTATATC
1 AACAGTAATTCATTC-ATTTC
* * *
13599344 AACAATAATTCATTCGTATC
1 AACAGTAATTCATTCATTTC
13599364 AACAGTAATTCATTCATTTC
1 AACAGTAATTCATTCATTTC
*
13599384 AATAGTAATTCATTCATTTC
1 AACAGTAATTCATTCATTTC
13599404 AACA
1 AACA
13599408 TAGCTTATTC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
20 53 0.96
21 2 0.04
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (20 bp):
AACAGTAATTCATTCATTTC
Found at i:13599603 original size:22 final size:22
Alignment explanation
Indices: 13599573--13599618 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
13599563 TAAGCTGATA
13599573 AACAATAAGCTC-TATCGAGCTG
1 AACAATAAGCTCATA-CGAGCTG
*
13599595 AACAGTAAGCTCATACGAGCTG
1 AACAATAAGCTCATACGAGCTG
13599617 AA
1 AA
13599619 ATATCAGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (22 bp):
AACAATAAGCTCATACGAGCTG
Found at i:13605282 original size:23 final size:24
Alignment explanation
Indices: 13605242--13605294 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
13605232 GATTTTTCAC
*
13605242 TTCTTTCTTCATTCTTTTTTCGTT
1 TTCTTTCCTCATTCTTTTTTCGTT
* *
13605266 TTCTTTCCT-ATTTTTTTTTCTTT
1 TTCTTTCCTCATTCTTTTTTCGTT
13605289 TTCTTT
1 TTCTTT
13605295 TGCCTTTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (24 bp):
TTCTTTCCTCATTCTTTTTTCGTT
Found at i:13607356 original size:46 final size:46
Alignment explanation
Indices: 13607181--13607356 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
13607171 TGTAACCCGC
* * * *
13607181 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
13607227 CCATAAGTGAACTCGGACTCAACTCAACGCGCCCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
13607273 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
13607320 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
13607357 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.63
47 30 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:13607357 original size:93 final size:93
Alignment explanation
Indices: 13607189--13607360 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
13607179 GCCCATAAGT
* *
13607189 GAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
13607254 CGCGCCCGGATGCCTAGTTACATCTCTC
66 CGAGCCCGGATGCCTAGTTACATCTCTC
* * *
13607282 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
**
13607347 CGAGTTCGGATGCC
66 CGAGCCCGGATGCC
13607361 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCCCGGATGCCTAGTTACATCTCTC
Found at i:13607811 original size:30 final size:30
Alignment explanation
Indices: 13607780--13607837 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
13607770 TAATACGAAC
13607780 TTTGAAAAAATTACACTTTTGCCCCTAAACT
1 TTTG-AAAAATTACACTTTTGCCCCTAAACT
* *
13607811 TTTGCATAATTACACTTTTGCCCCTAA
1 TTTGAAAAATTACACTTTTGCCCCTAA
13607838 GCTCGGGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTGAAAAATTACACTTTTGCCCCTAAACT
Found at i:13613057 original size:20 final size:22
Alignment explanation
Indices: 13613018--13613058 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
13613008 TGATTTAATA
*
13613018 TATTAAATTTATTGAATTTAAC
1 TATTAAATTTATTAAATTTAAC
13613040 TATT-AATTT-TTAAATTTAA
1 TATTAAATTTATTAAATTTAA
13613059 TGCTAAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 5 0.28
22 4 0.22
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTAAATTTATTAAATTTAAC
Found at i:13613509 original size:3 final size:3
Alignment explanation
Indices: 13613497--13613565 Score: 61
Period size: 3 Copynumber: 23.7 Consensus size: 3
13613487 TTAAACAATT
* * * * * * *
13613497 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA AT- ATT TTT TTG TTT ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
13613543 ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
13613566 TTGTTGTTGT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
2 4 0.07
3 55 0.93
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (3 bp):
ATA
Found at i:13613551 original size:35 final size:35
Alignment explanation
Indices: 13613505--13613573 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
13613495 TTATAAAATA
* *
13613505 ATAATAATAATAATAATAATAATATTTTTTTGTTT
1 ATAATAATAATAATAATAATAATAATTTGTTGTTT
13613540 ATAATAATAATAATAATAATAATAATTTGTTGTT
1 ATAATAATAATAATAATAATAATAATTTGTTGTT
13613574 GTAAATTAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (35 bp):
ATAATAATAATAATAATAATAATAATTTGTTGTTT
Found at i:13613569 original size:32 final size:32
Alignment explanation
Indices: 13613508--13613570 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
13613498 TAAAATAATA
* **
13613508 ATAATAATAATAATAATAATATTTTTTTGTTT
1 ATAATAATAATAATAATAATAATAATTTGTTT
13613540 ATAATAATAATAATAATAATAATAATTTGTT
1 ATAATAATAATAATAATAATAATAATTTGTT
13613571 GTTGTAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (32 bp):
ATAATAATAATAATAATAATAATAATTTGTTT
Found at i:13616294 original size:30 final size:30
Alignment explanation
Indices: 13616260--13616326 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 30
13616250 TAAAAAAAAA
13616260 TAAAAATCAATAA-AAATA-TTAAATTTTAAT
1 TAAAAAT--ATAAGAAATATTTAAATTTTAAT
*
13616290 TAAAAATATAAGAAATATTTAAATTTTTAT
1 TAAAAATATAAGAAATATTTAAATTTTAAT
13616320 TAAAAAT
1 TAAAAAT
13616327 TAGAAAAAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
28 4 0.12
29 5 0.15
30 25 0.74
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (30 bp):
TAAAAATATAAGAAATATTTAAATTTTAAT
Found at i:13616370 original size:29 final size:27
Alignment explanation
Indices: 13616321--13616389 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 27
13616311 AATTTTTATT
13616321 AAAAATTAGAAAAAGATTAGAAAAATCATA
1 AAAAATTA-AAAAAGATTAGAAAAAT-A-A
* *
13616351 AAAAATT-AAAAATATATAGAAATATAA
1 AAAAATTAAAAAAGAT-TAGAAAAATAA
13616378 AAAAATATAAAA
1 AAAAAT-TAAAA
13616390 TTTTATAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
27 7 0.21
28 9 0.26
29 11 0.32
30 7 0.21
ACGTcount: A:0.71, C:0.01, G:0.06, T:0.22
Consensus pattern (27 bp):
AAAAATTAAAAAAGATTAGAAAAATAA
Found at i:13616378 original size:18 final size:16
Alignment explanation
Indices: 13616352--13616391 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
13616342 AAAATCATAA
*
13616352 AAAATTAAAAATATAT
1 AAAATTAAAAAAATAT
13616368 AGAAATATAAAAAAATAT
1 A-AAAT-TAAAAAAATAT
13616386 AAAATT
1 AAAATT
13616392 TTATAAAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 2 0.10
17 8 0.38
18 11 0.52
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (16 bp):
AAAATTAAAAAAATAT
Found at i:13616735 original size:29 final size:29
Alignment explanation
Indices: 13616695--13616761 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
13616685 TTTTCTTCTA
* *
13616695 ATTTTTAGTAAAATTTAAATATTTTTTA-T
1 ATTTTTATTAAAATTT-AATAATTTTTATT
*
13616724 ATTTTTATTAAAGTTTAATAATTTTTATT
1 ATTTTTATTAAAATTTAATAATTTTTATT
*
13616753 ACTTTTATT
1 ATTTTTATT
13616762 GATTTTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 10 0.30
29 23 0.70
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.61
Consensus pattern (29 bp):
ATTTTTATTAAAATTTAATAATTTTTATT
Found at i:13624360 original size:52 final size:52
Alignment explanation
Indices: 13624261--13624360 Score: 146
Period size: 52 Copynumber: 1.9 Consensus size: 52
13624251 CATATTTTCT
*
13624261 TGGATCATTTGTACTCTTCATCCAATAACACGAAATTCCAATTGTCCATCAA
1 TGGATCATTTGTACTCTTCATCCAATAACACGAAATTCCAATCGTCCATCAA
** * * *
13624313 TGGATCATTTGTACTCTTCATCTGATAACACGACATTCTAGTCGTCCA
1 TGGATCATTTGTACTCTTCATCCAATAACACGAAATTCCAATCGTCCA
13624361 CTAACATCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (52 bp):
TGGATCATTTGTACTCTTCATCCAATAACACGAAATTCCAATCGTCCATCAA
Found at i:13641713 original size:25 final size:23
Alignment explanation
Indices: 13641663--13641713 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
13641653 TTTTGAACTT
**
13641663 AATAATTTTAAAATTTATATTAA
1 AATAATTTTAAAATAAATATTAA
*
13641686 AATAATTTTTAAAATCAAATATTCA
1 AATAA-TTTTAAAAT-AAATATTAA
13641711 AAT
1 AAT
13641714 TGTAAATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 5 0.22
24 9 0.39
25 9 0.39
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
AATAATTTTAAAATAAATATTAA
Found at i:13642083 original size:11 final size:11
Alignment explanation
Indices: 13642067--13642092 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13642057 ACTTTTTTGA
13642067 ATTTTTATAAT
1 ATTTTTATAAT
13642078 ATTTTTATAAT
1 ATTTTTATAAT
13642089 ATTT
1 ATTT
13642093 ATAATTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTTTTATAAT
Found at i:13642826 original size:32 final size:31
Alignment explanation
Indices: 13642764--13642836 Score: 78
Period size: 32 Copynumber: 2.4 Consensus size: 31
13642754 AAAAAAAATC
* * *
13642764 AATTTTCGAGTTAATCGAATTGAGTTATTCG
1 AATTTTCGAGTCAATCGAATTAAGTAATTCG
13642795 AATTATTCGAGTCAACTCGAA-TAAGTAATTCG
1 AATT-TTCGAGTCAA-TCGAATTAAGTAATTCG
*
13642827 AGTTTT-GAGT
1 AATTTTCGAGT
13642837 TCAAATCAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 4 0.11
31 6 0.17
32 21 0.58
33 5 0.14
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (31 bp):
AATTTTCGAGTCAATCGAATTAAGTAATTCG
Found at i:13645639 original size:19 final size:18
Alignment explanation
Indices: 13645602--13645640 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
13645592 AAATTTCTCC
*
13645602 TCTTTCTTTTCTACTTTT
1 TCTTTCTTTTCTACATTT
*
13645620 TCTTTCCTTTTCTTCATTT
1 TCTTT-CTTTTCTACATTT
13645639 TC
1 TC
13645641 CATCTCCCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (18 bp):
TCTTTCTTTTCTACATTT
Found at i:13649470 original size:5 final size:5
Alignment explanation
Indices: 13649460--13649634 Score: 106
Period size: 5 Copynumber: 35.2 Consensus size: 5
13649450 ACATAATAGT
*
13649460 ACATA ACATA ACAT- ACATA CAAATA TACA-A ACATA ACAGTAA ACATA
1 ACATA ACATA ACATA ACATA -ACATA -ACATA ACATA ACA-T-A ACATA
*
13649507 ACAT- ACAT- ACATA ACA-A TACATA ACATA ACATA CAAATA TACA-A
1 ACATA ACATA ACATA ACATA -ACATA ACATA ACATA -ACATA -ACATA
*
13649551 ACATA ACATTAA ACATA ACAT- ACAT- GCATA ACAGT- ACATA ACAT-
1 ACATA ACA-T-A ACATA ACATA ACATA ACATA ACA-TA ACATA ACATA
* *
13649595 ACATA AAATA ATAGTAA ACATA ACAT- ACAT- ACAT- ACATA A
1 ACATA ACATA ACA-T-A ACATA ACATA ACATA ACATA ACATA A
13649635 ACAGTAAAGA
Statistics
Matches: 140, Mismatches: 11, Indels: 38
0.74 0.06 0.20
Matches are distributed among these distances:
4 43 0.31
5 66 0.47
6 20 0.14
7 11 0.08
ACGTcount: A:0.58, C:0.19, G:0.02, T:0.21
Consensus pattern (5 bp):
ACATA
Found at i:13649506 original size:61 final size:59
Alignment explanation
Indices: 13649441--13649634 Score: 222
Period size: 61 Copynumber: 3.3 Consensus size: 59
13649431 TGACAAACAT
*
13649441 ACATAATATACATAATAGTACATAACATAACATACATACAAATATACAAACATAACAGTAA
1 ACATAACATACATAATA--ACATAACATAACATACATACAAATATACAAACATAACAGTAA
*
13649502 ACATAACATACATACATAACA-ATACATAACATAACATACAAATATACAAACATAACATTAA
1 ACATAACATACATA-ATAACATA-ACATAACAT-ACATACAAATATACAAACATAACAGTAA
* *
13649563 ACATAACATACATGCATAACAGT-ACATAACATACATA-AAATAATAGTAAACATAACA-T--
1 ACATAACATACAT-AATAACA-TAACATAACATACATACAAAT-ATA-CAAACATAACAGTAA
13649621 ACAT-ACATACATAA
1 ACATAACATACATAA
13649635 ACAGTAAAGA
Statistics
Matches: 120, Mismatches: 5, Indels: 21
0.82 0.03 0.14
Matches are distributed among these distances:
56 1 0.01
57 8 0.07
58 4 0.03
59 5 0.04
60 21 0.17
61 78 0.65
62 3 0.03
ACGTcount: A:0.57, C:0.18, G:0.03, T:0.22
Consensus pattern (59 bp):
ACATAACATACATAATAACATAACATAACATACATACAAATATACAAACATAACAGTAA
Found at i:13649528 original size:65 final size:64
Alignment explanation
Indices: 13649435--13649599 Score: 239
Period size: 61 Copynumber: 2.6 Consensus size: 64
13649425 AACACATGAC
* *
13649435 AAACAT-ACATAATATACATAATAGTACATAACATAACATACATACAAATATACAAACATAACAG
1 AAACATAACAT-ACATACATAACAGTACATAACAT-ACATACATACAAATATACAAACATAACAG
13649499 T
64 T
* *
13649500 AAACATAACATACATACATAACAATACATAACAT--A-ACATACAAATATACAAACATAACATT
1 AAACATAACATACATACATAACAGTACATAACATACATACATACAAATATACAAACATAACAGT
*
13649561 AAACATAACATACATGCATAACAGTACATAACATACATA
1 AAACATAACATACATACATAACAGTACATAACATACATA
13649600 AAATAATAGT
Statistics
Matches: 90, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
61 57 0.63
62 1 0.01
63 1 0.01
64 1 0.01
65 26 0.29
66 4 0.04
ACGTcount: A:0.57, C:0.19, G:0.02, T:0.22
Consensus pattern (64 bp):
AAACATAACATACATACATAACAGTACATAACATACATACATACAAATATACAAACATAACAGT
Found at i:13649592 original size:10 final size:9
Alignment explanation
Indices: 13649436--13649663 Score: 129
Period size: 9 Copynumber: 25.1 Consensus size: 9
13649426 ACACATGACA
13649436 AACATACAT
1 AACATACAT
*
13649445 AATATACAT
1 AACATACAT
*
13649454 AATAGTACAT
1 AACA-TACAT
13649464 AACATAACAT
1 AACAT-ACAT
13649474 -ACATACA-
1 AACATACAT
*
13649481 AATATACA-
1 AACATACAT
13649489 AACATAACAGT
1 AACAT-ACA-T
13649500 AAACATAACAT
1 -AACAT-ACAT
13649511 -ACATACAT
1 AACATACAT
13649519 AACAATACAT
1 AAC-ATACAT
13649529 AACATAACAT
1 AACAT-ACAT
13649539 -ACA-A-AT
1 AACATACAT
*
13649545 ATACAAACAT
1 A-ACATACAT
*
13649555 AACAT-TA-
1 AACATACAT
13649562 AACATAACAT
1 AACAT-ACAT
*
13649572 -ACATGCAT
1 AACATACAT
13649580 AACAGTACAT
1 AACA-TACAT
13649590 AACATACAT
1 AACATACAT
*
13649599 AAAATA-AT
1 AACATACAT
** *
13649607 AGTAAACAT
1 AACATACAT
13649616 AACATACAT
1 AACATACAT
13649625 -ACATACAT
1 AACATACAT
* *
13649633 AAACAGTAAAGA
1 -AACA-TACA-T
13649645 AACATACAT
1 AACATACAT
*
13649654 AACAGACAT
1 AACATACAT
13649663 A
1 A
13649664 CATTTCACCC
Statistics
Matches: 174, Mismatches: 21, Indels: 48
0.72 0.09 0.20
Matches are distributed among these distances:
6 2 0.01
7 6 0.03
8 37 0.21
9 70 0.40
10 42 0.24
11 8 0.05
12 9 0.05
ACGTcount: A:0.57, C:0.18, G:0.04, T:0.21
Consensus pattern (9 bp):
AACATACAT
Found at i:13649650 original size:34 final size:34
Alignment explanation
Indices: 13649419--13649580 Score: 56
Period size: 33 Copynumber: 4.8 Consensus size: 34
13649409 AATATAACAG
* * *
13649419 TAATA-TAACACATGACAAACATACATA-ATATACA
1 TAATAGTAA-ACATAACATACATACATACATA-AAA
*
13649453 TAATAGT--ACATAACATAACATACATACA-AATA
1 TAATAGTAAACATAACAT-ACATACATACATAAAA
**
13649485 TACA-AACATAACAGTAAACATAACATACATACATAACAA
1 TA-ATAGTA-AACA-T-AACAT-ACATACATACATAA-AA
* * * *
13649524 T-ACA-T-AACATAACATACAAATATACA-AACA
1 TAATAGTAAACATAACATACATACATACATAAAA
* * *
13649554 TAACATTAAACATAACATACATGCATA
1 TAATAGTAAACATAACATACATACATA
13649581 ACAGTACATA
Statistics
Matches: 100, Mismatches: 13, Indels: 31
0.69 0.09 0.22
Matches are distributed among these distances:
30 2 0.02
31 5 0.05
32 22 0.22
33 32 0.32
34 7 0.07
35 8 0.08
36 1 0.01
37 18 0.18
38 3 0.03
39 2 0.02
ACGTcount: A:0.57, C:0.19, G:0.02, T:0.22
Consensus pattern (34 bp):
TAATAGTAAACATAACATACATACATACATAAAA
Found at i:13649663 original size:34 final size:34
Alignment explanation
Indices: 13649577--13649666 Score: 96
Period size: 34 Copynumber: 2.6 Consensus size: 34
13649567 AACATACATG
*
13649577 CATAACAGTACATAACATACATAAAATAATAGTAAA
1 CATAACA-TACA-GACATACATAAAATAATAGTAAA
*
13649613 CATAACATACATACATACATAAACAGTAA-AG-AAA
1 CATAACATACAGACATACATAAA-A-TAATAGTAAA
13649647 CAT-ACATAACAGACATACAT
1 CATAACAT-ACAGACATACAT
13649667 TTCACCCTCA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
33 4 0.08
34 28 0.57
35 7 0.14
36 10 0.20
ACGTcount: A:0.57, C:0.18, G:0.06, T:0.20
Consensus pattern (34 bp):
CATAACATACAGACATACATAAAATAATAGTAAA
Found at i:13650542 original size:27 final size:27
Alignment explanation
Indices: 13650512--13650574 Score: 72
Period size: 29 Copynumber: 2.3 Consensus size: 27
13650502 ACTAGTAGAC
* * * *
13650512 GGGAAAAAAAAGTTTGGGTACCACTCT
1 GGGAAAAAAAACTATAGGTACCAATCT
13650539 GGGATAAAAAAAACTATAGGTACCAATCT
1 GGG--AAAAAAAACTATAGGTACCAATCT
13650568 GGGAAAA
1 GGGAAAA
13650575 GTGGAAAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 7 0.23
29 23 0.77
ACGTcount: A:0.44, C:0.13, G:0.24, T:0.19
Consensus pattern (27 bp):
GGGAAAAAAAACTATAGGTACCAATCT
Found at i:13654372 original size:42 final size:43
Alignment explanation
Indices: 13654318--13654434 Score: 123
Period size: 42 Copynumber: 2.7 Consensus size: 43
13654308 TCAAATATCA
* *
13654318 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAT-AGA-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATC-TCAAATCG
* * * *
13654360 ATGCCGATGTCCCAAACATGGTCTTACACTTAAATCTCAAATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACAC-GAAATCTCAAATCG
*
13654404 ATGCCAACGTCCCAGAC-GTGGTCTTACACGA
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGA
13654435 TAACACATAT
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
42 26 0.43
43 8 0.13
44 26 0.43
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTCAAATCG
Found at i:13655700 original size:17 final size:18
Alignment explanation
Indices: 13655663--13655701 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
13655653 CTCTTTTTAA
*
13655663 TTTTTTTCAGTCTTTTCT
1 TTTTTTTCAATCTTTTCT
*
13655681 TTTTTTTCAATGTTTT-T
1 TTTTTTTCAATCTTTTCT
13655698 TTTT
1 TTTT
13655702 CATTTGACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.08, C:0.10, G:0.05, T:0.77
Consensus pattern (18 bp):
TTTTTTTCAATCTTTTCT
Found at i:13656478 original size:31 final size:29
Alignment explanation
Indices: 13656409--13656482 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
13656399 ACAAAATAAT
**
13656409 AACATAAGTGACTAAAATGTAACATTTCA
1 AACATAAGTGACTAAAATGTAACATAACA
*
13656438 AACATAAGTGACTAAAATGTAACCTGAAACA
1 AACATAAGTGACTAAAATGTAACAT--AACA
*
13656469 AACAAAAGTGACTA
1 AACATAAGTGACTA
13656483 TTTTTGTAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.51, C:0.15, G:0.12, T:0.22
Consensus pattern (29 bp):
AACATAAGTGACTAAAATGTAACATAACA
Found at i:13657616 original size:20 final size:20
Alignment explanation
Indices: 13657588--13657635 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
13657578 AATTTTCTAA
13657588 TAAGAGTAATTTGATTTACC
1 TAAGAGTAATTTGATTTACC
*
13657608 TAGGAGTAATTTGATTTACC
1 TAAGAGTAATTTGATTTACC
13657628 TAAGAGTA
1 TAAGAGTA
13657636 GTGGTTGGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (20 bp):
TAAGAGTAATTTGATTTACC
Found at i:13658356 original size:17 final size:17
Alignment explanation
Indices: 13658300--13658371 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 17
13658290 ATTAATTATC
13658300 ATACATGTACTTGAA-G
1 ATACATGTACTTGAAGG
* * *
13658316 ATACAT-TGCATAGGAGG
1 ATACATGTAC-TTGAAGG
* *
13658333 ATTCATGAACTTGAAGG
1 ATACATGTACTTGAAGG
*
13658350 ATACATGTACTT-AAAG
1 ATACATGTACTTGAAGG
13658366 ATACAT
1 ATACAT
13658372 CGCATGAGAA
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
15 2 0.05
16 18 0.43
17 21 0.50
18 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.29
Consensus pattern (17 bp):
ATACATGTACTTGAAGG
Found at i:13660438 original size:33 final size:33
Alignment explanation
Indices: 13660396--13660467 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
13660386 TAGTAAGTAT
13660396 TTTCTAACAAATCATCTAAAATAATAATTTATC
1 TTTCTAACAAATCATCTAAAATAATAATTTATC
13660429 TTTCTAACAAATCATCTAAAATAATAATTTATC
1 TTTCTAACAAATCATCTAAAATAATAATTTATC
13660462 -TTCTAA
1 TTTCTAA
13660468 TAAAAAAGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
32 6 0.15
33 33 0.85
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.40
Consensus pattern (33 bp):
TTTCTAACAAATCATCTAAAATAATAATTTATC
Found at i:13664867 original size:27 final size:27
Alignment explanation
Indices: 13664836--13664888 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
13664826 AAAATTCATG
13664836 AAAAACGAGTGAAAATAGACTTCGATT
1 AAAAACGAGTGAAAATAGACTTCGATT
13664863 AAAAACGAGTGAAAATAGACTTCGAT
1 AAAAACGAGTGAAAATAGACTTCGAT
13664889 GCAAGTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.21
Consensus pattern (27 bp):
AAAAACGAGTGAAAATAGACTTCGATT
Found at i:13667805 original size:9 final size:9
Alignment explanation
Indices: 13667791--13667817 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
13667781 CTTGAAATCA
13667791 TCCTTGAAT
1 TCCTTGAAT
13667800 TCCTTGAAT
1 TCCTTGAAT
13667809 TCCTTGAAT
1 TCCTTGAAT
13667818 CCGGTCTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (9 bp):
TCCTTGAAT
Found at i:13670454 original size:13 final size:13
Alignment explanation
Indices: 13670436--13670483 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
13670426 TTACACACAT
13670436 TTCATTATTTTAA
1 TTCATTATTTTAA
13670449 TTCATTA-TTT-A
1 TTCATTATTTTAA
13670460 -T-ATTATTTTTACA
1 TTCATTA-TTTTA-A
13670473 TTCATTATTTT
1 TTCATTATTTT
13670484 TAAAAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 11
0.73 0.00 0.28
Matches are distributed among these distances:
9 4 0.14
10 1 0.03
11 4 0.14
12 3 0.10
13 8 0.28
14 5 0.17
15 4 0.14
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (13 bp):
TTCATTATTTTAA
Found at i:13670479 original size:24 final size:22
Alignment explanation
Indices: 13670439--13670482 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
13670429 CACACATTTC
13670439 ATTATTTTAATTCATTATTTAT
1 ATTATTTTAATTCATTATTTAT
13670461 ATTATTTTTACATTCATTATTT
1 ATTA-TTTTA-ATTCATTATTT
13670483 TTAAAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 4 0.20
23 5 0.25
24 11 0.55
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (22 bp):
ATTATTTTAATTCATTATTTAT
Found at i:13674353 original size:19 final size:19
Alignment explanation
Indices: 13674329--13674365 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
13674319 ATTATTTCCC
13674329 ATCAAAACAACACCTTCAT
1 ATCAAAACAACACCTTCAT
*
13674348 ATCAAAATAACACCTTCA
1 ATCAAAACAACACCTTCA
13674366 GACACTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.22
Consensus pattern (19 bp):
ATCAAAACAACACCTTCAT
Found at i:13676734 original size:20 final size:20
Alignment explanation
Indices: 13676709--13676748 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
13676699 GTGAAGCTAT
13676709 TGGACATATTGTTGGAAAGA
1 TGGACATATTGTTGGAAAGA
13676729 TGGACATATTGTTGGAAAGA
1 TGGACATATTGTTGGAAAGA
13676749 AGGAAAAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.30, T:0.30
Consensus pattern (20 bp):
TGGACATATTGTTGGAAAGA
Found at i:13685394 original size:12 final size:11
Alignment explanation
Indices: 13685371--13685453 Score: 55
Period size: 12 Copynumber: 7.3 Consensus size: 11
13685361 ATTATTTTTC
13685371 TTTATATATTA
1 TTTATATATTA
13685382 TTTATATTATTA
1 TTTATA-TATTA
* *
13685394 TATACCATA-TA
1 TTTA-TATATTA
13685405 TATTATAT-TATA
1 T-TTATATAT-TA
*
13685417 TATTATACATT-
1 T-TTATATATTA
13685428 TTTATATATTA
1 TTTATATATTA
*
13685439 TTCCATATATTA
1 TT-TATATATTA
13685451 TTT
1 TTT
13685454 TTATTTTATC
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
10 8 0.14
11 14 0.25
12 32 0.57
13 2 0.04
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTATATATTA
Found at i:13685394 original size:19 final size:19
Alignment explanation
Indices: 13685356--13685440 Score: 63
Period size: 19 Copynumber: 4.6 Consensus size: 19
13685346 TGTAAAATAG
13685356 TATATATTATTT-T-TCT-T
1 TATATATTATTTATAT-TAT
13685373 TATATATTATTTATATTAT
1 TATATATTATTTATATTAT
** *
13685392 TATATACCATATATATTA-
1 TATATATTATTTATATTAT
* *
13685410 TAT-TATATATTATACATTTT
1 TATATAT-TATT-TATATTAT
13685430 TATATATTATT
1 TATATATTATT
13685441 CCATATATTA
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
17 14 0.26
18 7 0.13
19 22 0.42
20 7 0.13
21 3 0.06
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
TATATATTATTTATATTAT
Found at i:13685397 original size:21 final size:21
Alignment explanation
Indices: 13685373--13685472 Score: 67
Period size: 24 Copynumber: 4.5 Consensus size: 21
13685363 TATTTTTCTT
*
13685373 TATATATTATTTATATTATTA
1 TATACATTATTTATATTATTA
13685394 TATACCATATATATTATATTATATA
1 TATA-CAT-TAT-TTATATTAT-TA
* *
13685419 TTATACATTTTTATATATTATTC
1 -TATACATTATT-TATATTATTA
* * *
13685442 CATATATTATTTTTATT-TTA
1 TATACATTATTTATATTATTA
*
13685462 TCATAAATTAT
1 T-ATACATTAT
13685473 GTATTATTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
20 2 0.03
21 17 0.27
22 10 0.16
23 5 0.08
24 19 0.31
25 5 0.08
26 4 0.06
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (21 bp):
TATACATTATTTATATTATTA
Found at i:13697600 original size:44 final size:44
Alignment explanation
Indices: 13697541--13697984 Score: 647
Period size: 44 Copynumber: 10.1 Consensus size: 44
13697531 ATAGATCACC
* * *
13697541 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
* * *
13697585 GATAACAGGTTTGGCGTCTCTATATTGACAGAGAGCAGATCGAA
1 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
13697629 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
* * *
13697673 GATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCAAA
1 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
* *
13697717 GATGACAGATTTGGCATCTCTGTATTGACAGAGAGTAGATC-AGA
1 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGA-A
* * * *
13697761 GATGACAGATTTGGCTTTTCTGTATTGAAAGAGAGCAGATCGAA
1 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
* *
13697805 GATGACAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
* * *
13697849 GATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATTGAA
1 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
* * * * *
13697893 GATAGCGGATTTGGCATCTCTGTATTGTCAGAGAACAGATAGAA
1 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
13697937 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
13697981 GATA
1 GATA
13697985 GCATATCTAA
Statistics
Matches: 367, Mismatches: 31, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
43 1 0.00
44 365 0.99
45 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (44 bp):
GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
Found at i:13699583 original size:17 final size:16
Alignment explanation
Indices: 13699563--13699606 Score: 79
Period size: 17 Copynumber: 2.7 Consensus size: 16
13699553 TTATATACCA
13699563 TTATATATTATACATTT
1 TTATATATTATACA-TT
13699580 TTATATATTATACATT
1 TTATATATTATACATT
13699596 TTATATATTAT
1 TTATATATTAT
13699607 TCCATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATATATTATACATT
Found at i:13699643 original size:25 final size:26
Alignment explanation
Indices: 13699615--13699667 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
13699605 ATTCCATATA
* * *
13699615 TATTTTTTTTTTA-TCATAAATTATG
1 TATTATTTTATTATTCATAAACTATG
13699640 TATTATTTTATTATTCATAAACTATG
1 TATTATTTTATTATTCATAAACTATG
13699666 TA
1 TA
13699668 ATTTAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTATTTTATTATTCATAAACTATG
Found at i:13700867 original size:31 final size:31
Alignment explanation
Indices: 13700789--13700868 Score: 101
Period size: 30 Copynumber: 2.6 Consensus size: 31
13700779 GTTTCGACAT
**
13700789 TATCTAGATAAATATTAAAGTTAATTTAATA
1 TATCTAGATAAATATTAAAGTTAATAAAATA
* *
13700820 TCTC-AGATTAATATTAAA-TTAATAAAATA
1 TATCTAGATAAATATTAAAGTTAATAAAATA
13700849 CTATCTAGATAAATATTAAA
1 -TATCTAGATAAATATTAAA
13700869 CTAAATTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
29 9 0.22
30 16 0.39
31 16 0.39
ACGTcount: A:0.50, C:0.06, G:0.05, T:0.39
Consensus pattern (31 bp):
TATCTAGATAAATATTAAAGTTAATAAAATA
Found at i:13702748 original size:41 final size:41
Alignment explanation
Indices: 13702668--13702805 Score: 197
Period size: 41 Copynumber: 3.4 Consensus size: 41
13702658 CGTTTTACCA
* *
13702668 AAAACGCCGCTAAAA-ACTGAGAAATAGCGACGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGAATTAGCGACGCTTTTGGT
** *
13702708 AAAACGCCGCTAAAAGACAGAGTTTTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGAATTAGCGACGCTTTTGGT
* *
13702749 AAAACGCCGCTAAAAGACAGAGCATTAGCAACGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGAATTAGCGACGCTTTTGGT
*
13702790 AAAACGCTGCTAAAAG
1 AAAACGCCGCTAAAAG
13702806 TCATATAACT
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 15 0.17
41 72 0.83
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGACAGAGAATTAGCGACGCTTTTGGT
Found at i:13703437 original size:24 final size:24
Alignment explanation
Indices: 13703410--13703458 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
13703400 CGTATATTTA
*
13703410 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
13703434 TTAAAAGTCTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
13703458 T
1 T
13703459 GTTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAATTAAT
Found at i:13703844 original size:14 final size:14
Alignment explanation
Indices: 13703825--13703856 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
13703815 AGGTTTAGGT
13703825 GTTAGGGGTTATGG
1 GTTAGGGGTTATGG
13703839 GTTAGGGGTTATGG
1 GTTAGGGGTTATGG
13703853 GTTA
1 GTTA
13703857 TGGATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.38
Consensus pattern (14 bp):
GTTAGGGGTTATGG
Found at i:13703849 original size:21 final size:21
Alignment explanation
Indices: 13703791--13703871 Score: 83
Period size: 21 Copynumber: 3.8 Consensus size: 21
13703781 GGTTTACAGC
*
13703791 TTATGGTTTAAGGGTT-GGGG
1 TTATGGTTTAGGGGTTAGGGG
* *
13703811 TTTAAGGTTTAGGTGTTAGGGG
1 -TTATGGTTTAGGGGTTAGGGG
* *
13703833 TTATGGGTTAGGGGTTATGGG
1 TTATGGTTTAGGGGTTAGGGG
*
13703854 TTATGGATTTAAGGGTTA
1 TTATGG-TTTAGGGGTTA
13703872 TGTTGTATGA
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 36 0.73
22 13 0.27
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.41
Consensus pattern (21 bp):
TTATGGTTTAGGGGTTAGGGG
Found at i:13703857 original size:7 final size:7
Alignment explanation
Indices: 13703748--13703873 Score: 58
Period size: 7 Copynumber: 17.7 Consensus size: 7
13703738 ATTTTAAGGT
*
13703748 TTATGGA
1 TTATGGG
*
13703755 TTATGGA
1 TTATGGG
13703762 TTATGGG
1 TTATGGG
*
13703769 TTTATGGA
1 -TTATGGG
*
13703777 TTATGGT
1 TTATGGG
** *
13703784 TTACAGC
1 TTATGGG
*
13703791 TTATGGT
1 TTATGGG
*
13703798 TTAAGGG
1 TTATGGG
*
13703805 TT-GGGG
1 TTATGGG
* *
13703811 TTTAAGGT
1 -TTATGGG
13703819 TTA-GGTG
1 TTATGG-G
*
13703826 TTAGGGG
1 TTATGGG
13703833 TTATGGG
1 TTATGGG
*
13703840 TTAGGGG
1 TTATGGG
13703847 TTATGGG
1 TTATGGG
*
13703854 TTATGGAT
1 TTATGG-G
*
13703862 TTAAGGG
1 TTATGGG
13703869 TTATG
1 TTATG
13703874 TTGTATGATT
Statistics
Matches: 91, Mismatches: 22, Indels: 12
0.73 0.18 0.10
Matches are distributed among these distances:
6 5 0.05
7 71 0.78
8 15 0.16
ACGTcount: A:0.20, C:0.02, G:0.37, T:0.42
Consensus pattern (7 bp):
TTATGGG
Found at i:13704033 original size:14 final size:14
Alignment explanation
Indices: 13704014--13704080 Score: 89
Period size: 14 Copynumber: 4.7 Consensus size: 14
13704004 GTTTGCAGGT
*
13704014 AAAATGTTTTCTGG
1 AAAATGATTTCTGG
13704028 AAAATGATTTCTGG
1 AAAATGATTTCTGG
* *
13704042 AAAATAATTTCTTGA
1 AAAATGATTTC-TGG
*
13704057 AAAATGATTTATGG
1 AAAATGATTTCTGG
13704071 AAAATGATTT
1 AAAATGATTT
13704081 ACTTTTCTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 35 0.76
15 11 0.24
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.39
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:13704677 original size:22 final size:21
Alignment explanation
Indices: 13704635--13704692 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
13704625 AATTTTTTAA
*
13704635 AAAAATTATTTAAAATTAATAT
1 AAAAATTA-TAAAAATTAATAT
13704657 AAAAGA-TATAAAAATTCAATAT
1 AAAA-ATTATAAAAATT-AATAT
13704679 AAAAATTATAAAAA
1 AAAAATTATAAAAA
13704693 AGTCAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 8 0.25
22 23 0.72
23 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAAATTATAAAAATTAATAT
Found at i:13704771 original size:38 final size:40
Alignment explanation
Indices: 13704703--13704811 Score: 186
Period size: 38 Copynumber: 2.8 Consensus size: 40
13704693 AGTCAAAAAT
13704703 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
* *
13704743 TAGCGGCGTTTAT-AT-AAAACGCCGCAAAAGGCAATCAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
13704781 TAGCGGCGTTTATGATAAAAACGCCGCAAAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAA
13704812 AGTAATTTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
38 34 0.52
39 4 0.06
40 27 0.42
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.17
Consensus pattern (40 bp):
TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
Found at i:13705118 original size:35 final size:36
Alignment explanation
Indices: 13705036--13705119 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 36
13705026 TGACTAAGCC
* * **
13705036 ATTTGCCTAAATCATAGTTCCCCCGAAACCCTCATT
1 ATTTCCCTAAATCATAGTTCCCCCAAAACCCTCAAA
*
13705072 TTTTCCC-AAATCATAGTTCCCCCAAAACCCT-AAA
1 ATTTCCCTAAATCATAGTTCCCCCAAAACCCTCAAA
13705106 ATTTCCCTAAATCA
1 ATTTCCCTAAATCA
13705120 AACCTATTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
34 7 0.17
35 29 0.71
36 5 0.12
ACGTcount: A:0.32, C:0.33, G:0.05, T:0.30
Consensus pattern (36 bp):
ATTTCCCTAAATCATAGTTCCCCCAAAACCCTCAAA
Found at i:13707817 original size:241 final size:241
Alignment explanation
Indices: 13707389--13707823 Score: 836
Period size: 241 Copynumber: 1.8 Consensus size: 241
13707379 GTATGAATTA
13707389 ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
1 ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
13707454 TTTTTTTAAATATTTTAAAGATTCAAAGTATTAGGCTGGAAACCTGACGGGTTGCCTTATATCGA
66 TTTTTTTAAATATTTTAAAGATTCAAAGTATTAGGCTGGAAACCTGACGGGTTGCCTTATATCGA
13707519 GCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
131 GCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
13707584 CAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAAT
196 CAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAAT
13707630 ATTTT-TTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
1 ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
*
13707694 TTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGATGGGTTGCCTTATATCG
66 TTTTTTTAAATATTTTAAAGATTCAAAGTAT-TAGGCTGGAAACCTGACGGGTTGCCTTATATCG
*
13707759 AGCTGTAAGATATAATGGATCTTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
130 AGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
13707824 AACTTACATA
Statistics
Matches: 191, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
240 90 0.47
241 101 0.53
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (241 bp):
ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
TTTTTTTAAATATTTTAAAGATTCAAAGTATTAGGCTGGAAACCTGACGGGTTGCCTTATATCGA
GCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
CAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAAT
Found at i:13707836 original size:9 final size:9
Alignment explanation
Indices: 13707822--13707880 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
13707812 ATCTTAAAAA
13707822 ATAACTTAC
1 ATAACTTAC
*
13707831 ATAACTCAC
1 ATAACTTAC
13707840 ATAACTTAC
1 ATAACTTAC
*
13707849 ATAATTTAC
1 ATAACTTAC
*
13707858 ATAACTCAC
1 ATAACTTAC
*
13707867 ATAACGTAC
1 ATAACTTAC
13707876 ATAAC
1 ATAAC
13707881 AACTTACGGA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:13707860 original size:27 final size:27
Alignment explanation
Indices: 13707822--13707880 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
13707812 ATCTTAAAAA
*
13707822 ATAACTTACATAACTCACATAACTTAC
1 ATAACTTACATAACTCACATAACGTAC
*
13707849 ATAATTTACATAACTCACATAACGTAC
1 ATAACTTACATAACTCACATAACGTAC
13707876 ATAAC
1 ATAAC
13707881 AACTTACGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (27 bp):
ATAACTTACATAACTCACATAACGTAC
Found at i:13708438 original size:40 final size:40
Alignment explanation
Indices: 13708393--13708473 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
13708383 CATGGAAGGT
13708393 ATGTTGCGGGATGCATTTAATATGCACAGTCATGGTGAGC
1 ATGTTGCGGGATGCATTTAATATGCACAGTCATGGTGAGC
13708433 ATGTTGCGGGATGCATTTAATATGCACAGTCATGGTGAGC
1 ATGTTGCGGGATGCATTTAATATGCACAGTCATGGTGAGC
13708473 A
1 A
13708474 ATCGTTTCCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (40 bp):
ATGTTGCGGGATGCATTTAATATGCACAGTCATGGTGAGC
Done.