Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 50 of 311
Found at i:14363164 original size:20 final size:22
Alignment explanation
Indices: 14363141--14363183 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14363131 TATTATACAT
14363141 TATAAGATTA-T-TTTATTATA
1 TATAAGATTATTATTTATTATA
**
14363161 TATATTATTATTATTTATTATA
1 TATAAGATTATTATTTATTATA
14363183 T
1 T
14363184 CTTATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 1 0.05
22 10 0.53
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TATAAGATTATTATTTATTATA
Found at i:14363188 original size:20 final size:17
Alignment explanation
Indices: 14363147--14363315 Score: 55
Period size: 19 Copynumber: 9.3 Consensus size: 17
14363137 ACATTATAAG
14363147 ATTATTTTATTATATAT
1 ATTATTTTATTATATAT
14363164 ATTATTATTATTTATTATAT
1 ATTATT-TTA-TTA-TATAT
* *
14363184 CTTATTTT-TTCACAAATTATT
1 ATTATTTTATT---ATA-TA-T
14363205 ATTATTTTACATTAT-TATT
1 ATTATTTT--ATTATATA-T
* *
14363224 TTTATATTATTATTATAT
1 ATTATTTTATTA-TATAT
* *
14363242 CTTACTTGTATTATATAT
1 ATTA-TTTTATTATATAT
14363260 -TTATTAATTATTTATATAT
1 ATTATT--TTA-TTATATAT
* *
14363279 ATTGTTCTTA-CATATAT
1 ATTATT-TTATTATATAT
14363296 ATT-TTGTTATT-T-TAT
1 ATTATT-TTATTATATAT
14363311 ATTAT
1 ATTAT
14363316 ATATTTCTTA
Statistics
Matches: 117, Mismatches: 15, Indels: 41
0.68 0.09 0.24
Matches are distributed among these distances:
15 6 0.05
16 9 0.08
17 24 0.21
18 15 0.13
19 35 0.30
20 17 0.15
21 9 0.08
24 2 0.02
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (17 bp):
ATTATTTTATTATATAT
Found at i:14363232 original size:14 final size:14
Alignment explanation
Indices: 14363201--14363237 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
14363191 TTTCACAAAT
14363201 TATTATTA-TTTTA
1 TATTATTATTTTTA
*
14363214 CATTATTATTTTTA
1 TATTATTATTTTTA
14363228 TATTATTATT
1 TATTATTATT
14363238 ATATCTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATTATTTTTA
Found at i:14363367 original size:16 final size:16
Alignment explanation
Indices: 14363342--14363393 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
14363332 ACATATTTAA
*
14363342 ATTATATTTATTGTAT
1 ATTATTTTTATTGTAT
* *
14363358 TTTATTTTTATTCTAT
1 ATTATTTTTATTGTAT
*
14363374 ATTACTTTTTTTTGTCAT
1 ATTA-TTTTTATTGT-AT
14363392 AT
1 AT
14363394 ATATATGATA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
16 16 0.57
17 8 0.29
18 4 0.14
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.67
Consensus pattern (16 bp):
ATTATTTTTATTGTAT
Found at i:14363806 original size:12 final size:13
Alignment explanation
Indices: 14363791--14363819 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
14363781 ATATCATGTG
14363791 TTATATA-TTATT
1 TTATATATTTATT
14363803 TTATATATTTATT
1 TTATATATTTATT
14363816 TTAT
1 TTAT
14363820 GAACATGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TTATATATTTATT
Found at i:14374462 original size:30 final size:30
Alignment explanation
Indices: 14374343--14374448 Score: 142
Period size: 30 Copynumber: 3.6 Consensus size: 30
14374333 TTAGCCCGGA
* *
14374343 TGAG-AAATCTATTATACTGTCAGCTTGTG
1 TGAGCAAATCTATTATAATGACAGCTTGTG
* *
14374372 TGAGCAAATCTATTATAAGGACAACTTGTG
1 TGAGCAAATCTATTATAATGACAGCTTGTG
*
14374402 TGAGCAAATCTATTATAATGAAAGCTTGTG
1 TGAGCAAATCTATTATAATGACAGCTTGTG
* *
14374432 TGAGCAATTTTATTATA
1 TGAGCAAATCTATTATA
14374449 CTGTTATCTT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
29 4 0.06
30 63 0.94
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (30 bp):
TGAGCAAATCTATTATAATGACAGCTTGTG
Found at i:14389199 original size:2 final size:2
Alignment explanation
Indices: 14389194--14389225 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
14389184 AGATAGATAC
*
14389194 AG AG AG AG AG AG AG AG AG AG AA AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14389226 GGGGGAAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14389238 original size:7 final size:7
Alignment explanation
Indices: 14389226--14389256 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
14389216 AGAGAGAGAG
14389226 GGGGGAA
1 GGGGGAA
14389233 GGGGGAA
1 GGGGGAA
14389240 GGGGGAA
1 GGGGGAA
14389247 GGGGGAA
1 GGGGGAA
14389254 GGG
1 GGG
14389257 AATCCACTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.74, T:0.00
Consensus pattern (7 bp):
GGGGGAA
Found at i:14400494 original size:30 final size:30
Alignment explanation
Indices: 14400451--14400558 Score: 94
Period size: 30 Copynumber: 3.5 Consensus size: 30
14400441 TTTTCCTCTG
14400451 AAATTTTTAGAAAATTTTAATTAAACCCTTC
1 AAATTTTT-GAAAATTTTAATTAAACCCTTC
* * * * *
14400482 AAATATTTGAAAATCCTT-ATTATACCTTTT
1 AAATTTTTGAAAAT-TTTAATTAAACCCTTC
* *
14400512 ATATTTTTGAAAATTTTAATTAAGCTCTCTT-
1 AAATTTTTGAAAATTTTAATTAAAC-C-CTTC
14400543 AAATTTTTTGAAAATT
1 AAA-TTTTTGAAAATT
14400559 CTCATTAATC
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
29 2 0.03
30 32 0.53
31 12 0.20
32 14 0.23
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (30 bp):
AAATTTTTGAAAATTTTAATTAAACCCTTC
Found at i:14404015 original size:42 final size:42
Alignment explanation
Indices: 14403951--14404058 Score: 128
Period size: 42 Copynumber: 2.6 Consensus size: 42
14403941 TCATATGAGT
* * * * * *
14403951 TTTCATTTAACCCTAATGGGTTTCCGTTCAGCTCTTTTGAGC
1 TTTCGTTTAACCCTTATGGGTTTCCATTCAGCTCCTATGAAC
14403993 -TTCTGTTTAACCCTTATGGGTTTCCATTCAGCTCCTATGAAC
1 TTTC-GTTTAACCCTTATGGGTTTCCATTCAGCTCCTATGAAC
* *
14404035 TTTCGTTCAACCCTTATAGGTTTC
1 TTTCGTTTAACCCTTATGGGTTTC
14404059 TGTTAGCACT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 3 0.05
42 50 0.89
43 3 0.05
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.43
Consensus pattern (42 bp):
TTTCGTTTAACCCTTATGGGTTTCCATTCAGCTCCTATGAAC
Found at i:14407633 original size:5 final size:5
Alignment explanation
Indices: 14407623--14407700 Score: 63
Period size: 5 Copynumber: 15.4 Consensus size: 5
14407613 GCAACCCAAT
* *
14407623 TTTTA TTTTA TTTT- TATTTA TTTTA TTTATTA TTTTA TTTTG TTTTC
1 TTTTA TTTTA TTTTA T-TTTA TTTTA -TT-TTA TTTTA TTTTA TTTTA
* *
14407670 TTTT- TTATT- TATTA CTTTA TTTTA TTTTA TT
1 TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TT
14407701 ATTTATTACT
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
4 5 0.08
5 48 0.79
6 5 0.08
7 3 0.05
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:14407688 original size:29 final size:29
Alignment explanation
Indices: 14407624--14407707 Score: 105
Period size: 29 Copynumber: 2.8 Consensus size: 29
14407614 CAACCCAATT
*
14407624 TTTATTTTATTTTTATTTATTTTATTTATTAT
1 TTTATTTTA-TTTTA-TT-TTTTATTTATTAC
* *
14407656 TTTATTTTGTTTTCTTTTTTATTTATTAC
1 TTTATTTTATTTTATTTTTTATTTATTAC
*
14407685 TTTATTTTATTTTATTATTTATT
1 TTTATTTTATTTTATTTTTTATT
14407708 ACTTTATTTG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
29 32 0.70
30 2 0.04
31 4 0.09
32 8 0.17
ACGTcount: A:0.19, C:0.02, G:0.01, T:0.77
Consensus pattern (29 bp):
TTTATTTTATTTTATTTTTTATTTATTAC
Found at i:14407702 original size:25 final size:24
Alignment explanation
Indices: 14407630--14407716 Score: 101
Period size: 25 Copynumber: 3.7 Consensus size: 24
14407620 AATTTTTATT
14407630 TTATTTTTA-TTTATTTTA-TTTA
1 TTATTTTTACTTTATTTTATTTTA
* * *
14407652 TTA-TTTTATTTTGTTTTCTTTT-
1 TTATTTTTACTTTATTTTATTTTA
14407674 TTATTTATTACTTTATTTTATTTTA
1 TTATTT-TTACTTTATTTTATTTTA
14407699 TTATTTATTACTTTATTT
1 TTATTT-TTACTTTATTT
14407717 GGATATTAAC
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
21 5 0.09
22 13 0.24
23 5 0.09
24 14 0.25
25 18 0.33
ACGTcount: A:0.20, C:0.03, G:0.01, T:0.76
Consensus pattern (24 bp):
TTATTTTTACTTTATTTTATTTTA
Found at i:14409614 original size:10 final size:10
Alignment explanation
Indices: 14409599--14409658 Score: 77
Period size: 10 Copynumber: 6.0 Consensus size: 10
14409589 TAAATTTAGG
*
14409599 ATTTATTTTT
1 ATTTATCTTT
14409609 ATTTATCTTT
1 ATTTATCTTT
*
14409619 AATTATCTTT
1 ATTTATCTTT
*
14409629 AATTATCTTT
1 ATTTATCTTT
14409639 ATTTAT-TTGT
1 ATTTATCTT-T
14409649 ATTTATCTTT
1 ATTTATCTTT
14409659 TAGAATTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
9 2 0.04
10 41 0.91
11 2 0.04
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:14418983 original size:21 final size:21
Alignment explanation
Indices: 14418957--14419008 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
14418947 TTTATTTTTC
* *
14418957 TTTATTATTTTATTTTAATTA
1 TTTATTATTTTATCTTAATGA
14418978 TTTATTATTTTATCTTAATGA
1 TTTATTATTTTATCTTAATGA
14418999 TTTATTATTT
1 TTTATTATTT
14419009 AATTATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (21 bp):
TTTATTATTTTATCTTAATGA
Found at i:14418986 original size:7 final size:7
Alignment explanation
Indices: 14418944--14419019 Score: 54
Period size: 7 Copynumber: 11.0 Consensus size: 7
14418934 AGGCAACCCA
14418944 ATTT-TT
1 ATTTATT
14418950 ATTT-TT
1 ATTTATT
*
14418956 CTTTATT
1 ATTTATT
14418963 ATTTTATT
1 A-TTTATT
*
14418971 -TTAATT
1 ATTTATT
14418977 ATTTATT
1 ATTTATT
14418984 A-TT-TT
1 ATTTATT
*
14418989 ATCTTAATG
1 AT-TT-ATT
14418998 ATTTATT
1 ATTTATT
14419005 ATTTAATT
1 ATTT-ATT
14419013 ATTTATT
1 ATTTATT
14419020 TTATTTTGGA
Statistics
Matches: 56, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
5 3 0.05
6 16 0.29
7 19 0.34
8 15 0.27
9 3 0.05
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (7 bp):
ATTTATT
Found at i:14420675 original size:10 final size:10
Alignment explanation
Indices: 14420660--14420709 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
14420650 TAATTTTAGG
14420660 ATTTAT-TTT
1 ATTTATCTTT
14420669 CATTTATCTTT
1 -ATTTATCTTT
14420680 ATTTATCTTT
1 ATTTATCTTT
14420690 ATTTAT-TTGT
1 ATTTATCTT-T
14420700 ATTTATCTTT
1 ATTTATCTTT
14420710 GAGAATTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:14422246 original size:12 final size:12
Alignment explanation
Indices: 14422229--14422267 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
14422219 AAAAATTTTG
14422229 AAATTTTGGGAA
1 AAATTTTGGGAA
14422241 AAATTTT--G--
1 AAATTTTGGGAA
14422249 AAATTTTGGGAA
1 AAATTTTGGGAA
14422261 AAATTTT
1 AAATTTT
14422268 TTGAGTTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
8 7 0.30
10 2 0.09
12 14 0.61
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (12 bp):
AAATTTTGGGAA
Found at i:14422268 original size:21 final size:20
Alignment explanation
Indices: 14422218--14422267 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
14422208 CTGCACCTAA
14422218 GAAAAATTTTGAAATTTTGG
1 GAAAAATTTTGAAATTTTGG
14422238 GAAAAATTTTGAAATTTTGG
1 GAAAAATTTTGAAATTTTGG
14422258 GAAAAATTTT
1 GAAAAATTTT
14422268 TTGAGTTTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (20 bp):
GAAAAATTTTGAAATTTTGG
Found at i:14424578 original size:47 final size:47
Alignment explanation
Indices: 14424426--14424602 Score: 211
Period size: 47 Copynumber: 3.8 Consensus size: 47
14424416 TGTAACCCGC
* * * *
14424426 CCATAAGTGAACTGGGACTCAACTCAACGAGCTCGG-CCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
14424472 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-AGTTCACAT
* * * *
14424522 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
14424566 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
14424603 TGTTCAACCA
Statistics
Matches: 111, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
43 3 0.03
44 5 0.05
46 36 0.32
47 58 0.52
48 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
Found at i:14424594 original size:94 final size:93
Alignment explanation
Indices: 14424434--14424604 Score: 288
Period size: 94 Copynumber: 1.8 Consensus size: 93
14424424 GCCCATAAGT
* * *
14424434 GAACTGGGACTCAACTCAACGAGCTCGGCCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGCAGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
14424499 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
14424527 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CAGTTCACATCCATAAGTGAACTCGGACTCAACTCA
14424592 ACGAGTTCGGATG
65 ACGAGTTCGGATG
14424605 TTCAACCATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
93 26 0.36
94 46 0.64
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCAGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:14425058 original size:30 final size:30
Alignment explanation
Indices: 14425024--14425083 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
14425014 CCTTAATACG
14425024 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
14425054 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
14425084 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:14429119 original size:42 final size:43
Alignment explanation
Indices: 14429065--14429186 Score: 124
Period size: 43 Copynumber: 2.8 Consensus size: 43
14429055 CATCGACTTA
14429065 TGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCG-TATT
1 TGATTT-CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATT
* * * *
14429108 TGATTTCGTGTAAAACC-CTATTTAGGACAG-TGGCATCGATATT
1 TGATTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATT
* * * *
14429151 TGATTACATGTAAGACTACGCCTGGGACGTTGGCAT
1 TGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
14429187 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.40
43 35 0.56
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATT
Found at i:14444176 original size:23 final size:22
Alignment explanation
Indices: 14444125--14444176 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
14444115 CCTCGTCTTT
*
14444125 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
14444147 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
14444170 TTCTTTT
1 TTCTTTT
14444177 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:14444185 original size:12 final size:12
Alignment explanation
Indices: 14444134--14444189 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
14444124 TTTCTTTTGT
14444134 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
14444147 -TCATTTTC-TC
1 TTCTTTTTCAAC
14444157 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
14444170 TTCTTTTTCAAT
1 TTCTTTTTCAAC
14444182 TTCTTTTT
1 TTCTTTTT
14444190 GTTTCACATT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.11
12 23 0.66
13 7 0.20
ACGTcount: A:0.12, C:0.23, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:14447082 original size:23 final size:22
Alignment explanation
Indices: 14447031--14447082 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
14447021 CCTCGTCTTT
*
14447031 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
14447053 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
14447076 TTCTTTT
1 TTCTTTT
14447083 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:14448802 original size:108 final size:108
Alignment explanation
Indices: 14448621--14448834 Score: 419
Period size: 108 Copynumber: 2.0 Consensus size: 108
14448611 CCAAAATCTG
*
14448621 ATACCAAATGATACGGGGTTGCGCGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTAT
1 ATACCAAATGATACGGGGTTGCGCGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTAC
14448686 GAAAACCCTAAACAATTAGATCTGAAACGAAACAGAAAATTCA
66 GAAAACCCTAAACAATTAGATCTGAAACGAAACAGAAAATTCA
14448729 ATACCAAATGATACGGGGTTGCGCGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTAC
1 ATACCAAATGATACGGGGTTGCGCGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTAC
14448794 GAAAACCCTAAACAATTAGATCTGAAACGAAACAGAAAATT
66 GAAAACCCTAAACAATTAGATCTGAAACGAAACAGAAAATT
14448835 AAAAGATTAG
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 105 1.00
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.17
Consensus pattern (108 bp):
ATACCAAATGATACGGGGTTGCGCGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTAC
GAAAACCCTAAACAATTAGATCTGAAACGAAACAGAAAATTCA
Found at i:14453496 original size:15 final size:17
Alignment explanation
Indices: 14453470--14453502 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14453460 ATTTATTATT
14453470 AATTATTTTTTC-TATA
1 AATTATTTTTTCATATA
14453486 AATTA-TTTTTCATATA
1 AATTATTTTTTCATATA
14453502 A
1 A
14453503 TAATCTAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
AATTATTTTTTCATATA
Found at i:14454826 original size:28 final size:28
Alignment explanation
Indices: 14454786--14454842 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
14454776 CTTTTTCTTG
14454786 ATTTACTCTGGATTCACTGAAAAGTTTA
1 ATTTACTCTGGATTCACTGAAAAGTTTA
14454814 ATTTACTCTGGATTCACTGAAAAGTTTA
1 ATTTACTCTGGATTCACTGAAAAGTTTA
14454842 A
1 A
14454843 GTCCAGAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (28 bp):
ATTTACTCTGGATTCACTGAAAAGTTTA
Found at i:14458481 original size:23 final size:23
Alignment explanation
Indices: 14458455--14458500 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14458445 CTTCTTTTAA
*
14458455 GTCTGTTGGTTGGCACGAGTTTT
1 GTCTGCTGGTTGGCACGAGTTTT
* *
14458478 GTCTGCTGTTTGGCACGTGTTTT
1 GTCTGCTGGTTGGCACGAGTTTT
14458501 TCAATAGTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.07, C:0.15, G:0.33, T:0.46
Consensus pattern (23 bp):
GTCTGCTGGTTGGCACGAGTTTT
Found at i:14461395 original size:13 final size:14
Alignment explanation
Indices: 14461377--14461410 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14461367 GTTTTATTAC
*
14461377 TTTTTTCTTT-CTT
1 TTTTTTATTTACTT
14461390 TTTTTTATTTACTT
1 TTTTTTATTTACTT
14461404 TTTTTTA
1 TTTTTTA
14461411 AGTTTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTATTTACTT
Found at i:14461405 original size:24 final size:25
Alignment explanation
Indices: 14461356--14461424 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
14461346 TTCCGTCAGA
*
14461356 TTCTTTGTTTTGTTTTA-TTACTTTT
1 TTCTTTATTTT-TTTTATTTACTTTT
*
14461381 TTCTTTCTTTTTTTTATTTACTTTT
1 TTCTTTATTTTTTTTATTTACTTTT
* *
14461406 TT-TTAAGTTTTTTTATTTA
1 TTCTTTATTTTTTTTATTTA
14461425 TCCTTATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 19 0.49
25 20 0.51
ACGTcount: A:0.12, C:0.07, G:0.04, T:0.77
Consensus pattern (25 bp):
TTCTTTATTTTTTTTATTTACTTTT
Found at i:14461434 original size:24 final size:24
Alignment explanation
Indices: 14461389--14461434 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
14461379 TTTTCTTTCT
* *
14461389 TTTTTTTATTTACTTTTTTTTAAG
1 TTTTTTTATTTACTCTTATTTAAG
14461413 TTTTTTTATTTA-TCCTTATTTA
1 TTTTTTTATTTACT-CTTATTTA
14461435 TTTTATTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (24 bp):
TTTTTTTATTTACTCTTATTTAAG
Found at i:14461557 original size:23 final size:21
Alignment explanation
Indices: 14461517--14461577 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
14461507 ATATATATAT
*
14461517 ATTTGAAAT-TATTTTTTAAA
1 ATTTTAAATATATTTTTTAAA
14461537 ATTTTAAATATTAATTTTTT--A
1 ATTTTAAATA-T-ATTTTTTAAA
14461558 ATTTTAAATATATTTTTTAA
1 ATTTTAAATATATTTTTTAA
14461578 TAATATAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
19 7 0.20
20 9 0.26
21 11 0.31
22 1 0.03
23 7 0.20
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTTAAATATATTTTTTAAA
Found at i:14461586 original size:21 final size:21
Alignment explanation
Indices: 14461517--14461586 Score: 67
Period size: 21 Copynumber: 3.3 Consensus size: 21
14461507 ATATATATAT
14461517 ATTTGAAAT-TATTTTTTAA-A
1 ATTT-AAATATATTTTTTAATA
14461537 ATTTTAAATATTAATTTTTTAAT-
1 A-TTTAAATA-T-ATTTTTTAATA
14461560 -TTTAAATATATTTTTTAATA
1 ATTTAAATATATTTTTTAATA
*
14461580 ATATAAA
1 ATTTAAA
14461587 ACATTTAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
19 10 0.24
20 6 0.14
21 16 0.38
22 1 0.02
23 9 0.21
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (21 bp):
ATTTAAATATATTTTTTAATA
Found at i:14461628 original size:100 final size:98
Alignment explanation
Indices: 14461524--14461762 Score: 292
Period size: 100 Copynumber: 2.4 Consensus size: 98
14461514 TATATTTGAA
* *
14461524 ATTATT-TTTTA-AA-ATTTTAAATAT-TAATTTTTTAATTTTAAATATATTT-TTTAATAATAT
1 ATTATTGTTTTATAATATTTTAAATGTAT-A-TTTTAAATTTTAAATATATTTATTT-AT--TAT
14461584 AAAACAT-TTAAATATTTTAAAGATATGACCTTTCAAATTT
61 AAAACATATT--AT-TTTTAAAGATATGACCTTTCAAATTT
* *
14461624 ATTATTAGTTTTATAATATTTTAAATGTATATTTTAAATTTTAAATATGTTTAATTTATTTTAAA
1 ATTATT-GTTTTATAATATTTTAAATGTATATTTTAAATTTTAAATATATTT-ATTTATTATAAA
*
14461689 ATATATTATTTTTAAAGATATGACCTTTCAAATTT
64 ACATATTATTTTTAAAGATATGACCTTTCAAATTT
14461724 ATTATTTGTTTTATAATATTTTAAATGTATATTTTAAAT
1 ATTA-TTGTTTTATAATATTTTAAATGTATATTTTAAAT
14461763 ATTTTTAAAA
Statistics
Matches: 125, Mismatches: 5, Indels: 18
0.84 0.03 0.12
Matches are distributed among these distances:
100 68 0.54
101 4 0.03
102 13 0.10
103 23 0.18
104 13 0.10
105 4 0.03
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (98 bp):
ATTATTGTTTTATAATATTTTAAATGTATATTTTAAATTTTAAATATATTTATTTATTATAAAAC
ATATTATTTTTAAAGATATGACCTTTCAAATTT
Found at i:14461671 original size:29 final size:28
Alignment explanation
Indices: 14461619--14461688 Score: 74
Period size: 30 Copynumber: 2.5 Consensus size: 28
14461609 TGACCTTTCA
*
14461619 AATTTATTATT-AGTTTTATAATAT-TTT
1 AATTTATT-TTAAATTTTATAATATGTTT
14461646 AAATGTATATTTTAAATTTTA-AATATGTTT
1 -AAT-T-TATTTTAAATTTTATAATATGTTT
14461676 AATTTATTTTAAA
1 AATTTATTTTAAA
14461689 ATATATTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
27 9 0.24
28 4 0.11
29 11 0.30
30 13 0.35
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (28 bp):
AATTTATTTTAAATTTTATAATATGTTT
Found at i:14461736 original size:50 final size:50
Alignment explanation
Indices: 14461597--14461747 Score: 128
Period size: 50 Copynumber: 3.0 Consensus size: 50
14461587 ACATTTAAAT
* *
14461597 ATTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTA
1 ATTTTAAAGATATGACCTTTCAAATTTATTATTTGTTTTATAATATATTA
* * * * * ** * * *
14461647 AATGT--ATATTTTAAATTTTAAATATGT-TTAATTTATTTTAAAATATATTA
1 ATTTTAAAGATATGACCTTTCAAAT-T-TATT-ATTTGTTTTATAATATATTA
* *
14461697 TTTTTAAAGATATGACCTTTCAAATTTATTATTTGTTTTATAATATTTTA
1 ATTTTAAAGATATGACCTTTCAAATTTATTATTTGTTTTATAATATATTA
14461747 A
1 A
14461748 ATGTATATTT
Statistics
Matches: 70, Mismatches: 25, Indels: 12
0.65 0.23 0.11
Matches are distributed among these distances:
48 12 0.17
49 3 0.04
50 40 0.57
51 3 0.04
52 12 0.17
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.54
Consensus pattern (50 bp):
ATTTTAAAGATATGACCTTTCAAATTTATTATTTGTTTTATAATATATTA
Found at i:14461794 original size:16 final size:16
Alignment explanation
Indices: 14461773--14461805 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14461763 ATTTTTAAAA
14461773 TTTTAATTATTAATTT
1 TTTTAATTATTAATTT
14461789 TTTTAATTATTAATTT
1 TTTTAATTATTAATTT
14461805 T
1 T
14461806 GAAATTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTAATTATTAATTT
Found at i:14461861 original size:8 final size:8
Alignment explanation
Indices: 14461848--14461882 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
14461838 TTAAATTAAA
14461848 TTTAAAAT
1 TTTAAAAT
14461856 TTTAAAAT
1 TTTAAAAT
14461864 TTTAAAA-
1 TTTAAAAT
*
14461871 TTTAATAT
1 TTTAAAAT
14461879 TTTA
1 TTTA
14461883 TTTGGTGGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (8 bp):
TTTAAAAT
Found at i:14461865 original size:15 final size:16
Alignment explanation
Indices: 14461848--14461882 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
14461838 TTAAATTAAA
14461848 TTTAAAATTTTAAAAT
1 TTTAAAATTTTAAAAT
*
14461864 TTTAAAA-TTTAATAT
1 TTTAAAATTTTAAAAT
14461879 TTTA
1 TTTA
14461883 TTTGGTGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TTTAAAATTTTAAAAT
Found at i:14465223 original size:30 final size:30
Alignment explanation
Indices: 14465183--14465285 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
14465173 GGTTGCTCTA
* * * *
14465183 GGTGAAATGAACTCGAACCGCCTATGTTCG
1 GGTGATATGAACTTGAACCGCCAATGTCCG
* *
14465213 GGTGATATGAACTTGAACTGCCCATGTCCG
1 GGTGATATGAACTTGAACCGCCAATGTCCG
*
14465243 GGTGATATGAACTTGAACCGCCAATGTCCA
1 GGTGATATGAACTTGAACCGCCAATGTCCG
*
14465273 GGTGACATGAACT
1 GGTGATATGAACT
14465286 GCTCTGCGAC
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (30 bp):
GGTGATATGAACTTGAACCGCCAATGTCCG
Found at i:14468121 original size:18 final size:18
Alignment explanation
Indices: 14468081--14468123 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
14468071 TAAAGTCATA
14468081 TTTTTTTAACAAATAAAT
1 TTTTTTTAACAAATAAAT
* *
14468099 ATTTTTTAACAAAT-ATT
1 TTTTTTTAACAAATAAAT
14468116 TTTTTTTA
1 TTTTTTTA
14468124 TTTTTTTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTTTTAACAAATAAAT
Found at i:14468261 original size:19 final size:19
Alignment explanation
Indices: 14468237--14468282 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
14468227 AAGTCATAAT
*
14468237 TTAAAAATTATATGTAAAA
1 TTAAAAATAATATGTAAAA
*
14468256 TTAAAAA-AATATTTAAAA
1 TTAAAAATAATATGTAAAA
*
14468274 TTTAAAATA
1 TTAAAAATA
14468283 TACATCTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
TTAAAAATAATATGTAAAA
Found at i:14468372 original size:22 final size:21
Alignment explanation
Indices: 14468345--14468411 Score: 54
Period size: 21 Copynumber: 3.3 Consensus size: 21
14468335 AAATATTTAA
14468345 ATATTTTATATTATTAAAAAAT
1 ATATTTTA-ATTATTAAAAAAT
*
14468367 ATA-TTTAA-AATT-AAAAAT
1 ATATTTTAATTATTAAAAAAT
*
14468385 AATATTTAAAATT-TTAAAAAAT
1 -ATATTT-TAATTATTAAAAAAT
14468407 A-ATTT
1 ATATTT
14468412 CAAATATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
18 6 0.16
19 6 0.16
20 7 0.19
21 9 0.24
22 9 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATTTTAATTATTAAAAAAT
Found at i:14468381 original size:19 final size:19
Alignment explanation
Indices: 14468237--14468434 Score: 79
Period size: 19 Copynumber: 10.1 Consensus size: 19
14468227 AAGTCATAAT
* *
14468237 TTAAAAATTATATGTAAAA
1 TTAAAAAATATATTTAAAA
14468256 TTAAAAAA-ATATTTAAAA
1 TTAAAAAATATATTTAAAA
* * *
14468274 TTTAAAATATACATCTAAAATA
1 -TTAAAAAATATAT-TTAAA-A
* *
14468296 TTATAAAAT-TAATAATAAAA
1 TTAAAAAATAT-AT-TTAAAA
* *
14468316 TTGAAAGGTAATATCTTTAAAA
1 TT-AAA--AAATATATTTAAAA
** *
14468338 -TATTTAAATAT-TTTATATTA
1 TTA-AAAAATATATTTA-A-AA
14468358 TTAAAAAATATATTTAAAA
1 TTAAAAAATATATTTAAAA
14468377 TT-AAAAATAATATTTAAAA
1 TTAAAAAAT-ATATTTAAAA
*
14468396 TTTTAAAAAATA-ATTTCAAA
1 --TTAAAAAATATATTTAAAA
* *
14468416 -T-ATATATATATTTAAAA
1 TTAAAAAATATATTTAAAA
14468433 TT
1 TT
14468435 TTTAAAAAAT
Statistics
Matches: 133, Mismatches: 26, Indels: 41
0.67 0.13 0.20
Matches are distributed among these distances:
16 5 0.04
17 8 0.06
18 20 0.15
19 33 0.25
20 22 0.17
21 28 0.21
22 12 0.09
23 4 0.03
24 1 0.01
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
TTAAAAAATATATTTAAAA
Found at i:14468465 original size:19 final size:19
Alignment explanation
Indices: 14468331--14468457 Score: 73
Period size: 20 Copynumber: 6.6 Consensus size: 19
14468321 AGGTAATATC
* *
14468331 TTTAAAATATTTAAATAT-
1 TTTAAAATATTAAAAAATA
* *
14468349 TTTATATTATTAAAAAATATA
1 TTTAAAATATT-AAAAA-ATA
*
14468370 TTTAAAAT-TAAAAATAATA
1 TTTAAAATATTAAAA-AATA
*
14468389 TTTAAAATTTTAAAAAATAA
1 TTTAAAATATTAAAAAAT-A
* * *
14468409 TTTCAAATA-T-ATATATA
1 TTTAAAATATTAAAAAATA
*
14468426 TTTAAAATTTTTAAAAAATA
1 TTTAAAA-TATTAAAAAATA
*
14468446 TTAAAAAATATT
1 TT-TAAAATATT
14468458 TCAAATATAC
Statistics
Matches: 81, Mismatches: 18, Indels: 18
0.69 0.15 0.15
Matches are distributed among these distances:
17 7 0.09
18 14 0.17
19 23 0.28
20 27 0.33
21 10 0.12
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (19 bp):
TTTAAAATATTAAAAAATA
Found at i:14476994 original size:56 final size:58
Alignment explanation
Indices: 14476885--14477007 Score: 189
Period size: 56 Copynumber: 2.2 Consensus size: 58
14476875 GAATAGAAAT
** *
14476885 AATGAAAATGGAGAAATGAGAAATATTTGGAAATGATTATAGTTTTCTTCAAAATGAA
1 AATGAAAATAAAGAAATGAGAAATATTTGGAAATGATTATAGTTTTCTCCAAAATGAA
14476943 AATGAAAATAAAGAAAT--GAAATAATTTGGAAATGATTAT-GTTTTCTCCAAAATGAA
1 AATGAAAATAAAGAAATGAGAAAT-ATTTGGAAATGATTATAGTTTTCTCCAAAATGAA
14476999 AATGAAAAT
1 AATGAAAAT
14477008 GACCTGCAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
56 30 0.49
57 16 0.26
58 15 0.25
ACGTcount: A:0.50, C:0.04, G:0.16, T:0.30
Consensus pattern (58 bp):
AATGAAAATAAAGAAATGAGAAATATTTGGAAATGATTATAGTTTTCTCCAAAATGAA
Found at i:14484077 original size:3 final size:3
Alignment explanation
Indices: 14484069--14484096 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
14484059 CCTTTGTTAC
14484069 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14484097 AAACCCGCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:14492305 original size:91 final size:91
Alignment explanation
Indices: 14492167--14492374 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
14492157 TTGATTTTAG
* *
14492167 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
14492232 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
14492259 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
14492324 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
14492350 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
14492375 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:14492343 original size:26 final size:28
Alignment explanation
Indices: 14492289--14492349 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
14492279 TATTATCAAG
* *
14492289 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
14492317 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
14492343 AATTATA
1 AATTATA
14492350 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:14492349 original size:44 final size:43
Alignment explanation
Indices: 14492207--14492349 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
14492197 GAATTTTATG
* *
14492207 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
14492251 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
14492298 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
14492342 AAATTATA
1 AAATTATA
14492350 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:14492467 original size:59 final size:57
Alignment explanation
Indices: 14492401--14492589 Score: 152
Period size: 59 Copynumber: 3.2 Consensus size: 57
14492391 ATTTTATTAA
14492401 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * *
14492460 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
14492521 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
14492580 ATCATATATT
1 ATCATATATT
14492590 ATGATTTGAG
Statistics
Matches: 99, Mismatches: 17, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
59 20 0.20
60 8 0.08
61 10 0.10
63 4 0.04
64 5 0.05
65 6 0.06
66 17 0.17
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:14492498 original size:66 final size:64
Alignment explanation
Indices: 14492428--14492626 Score: 186
Period size: 66 Copynumber: 3.2 Consensus size: 64
14492418 AAATATATTT
14492428 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
14492493 G
64 G
* * * * * **
14492494 AATATTAATTATTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
14492548 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
14492613 G
64 G
*
14492614 AATATTGATTATT
1 AATATTAATTATT
14492627 AAGAATTTTA
Statistics
Matches: 101, Mismatches: 18, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 27 0.27
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:14492514 original size:120 final size:120
Alignment explanation
Indices: 14492390--14492687 Score: 517
Period size: 120 Copynumber: 2.5 Consensus size: 120
14492380 AATTATTTTA
* * *
14492390 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
14492454 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
14492510 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
14492575 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
14492630 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
14492688 ATGATTAAAT
Statistics
Matches: 168, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
120 161 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:14492530 original size:61 final size:61
Alignment explanation
Indices: 14492463--14492650 Score: 192
Period size: 61 Copynumber: 3.1 Consensus size: 61
14492453 TTATAGTATC
14492463 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * *
14492524 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
14492582 C
61 T
*
14492583 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
14492644 ATATATT
1 ATATATT
14492651 TTAATTAAAA
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
57 11 0.11
58 8 0.08
59 18 0.19
60 16 0.17
61 25 0.26
62 7 0.07
63 11 0.11
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:14492550 original size:15 final size:15
Alignment explanation
Indices: 14492515--14492566 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14492505 TTAAGAATTT
*
14492515 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14492529 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14492543 TATTTAATAATAAT-
1 TATTTAATTATAATA
14492557 TATGTTAATT
1 TAT-TTAATT
14492567 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14492659 original size:18 final size:17
Alignment explanation
Indices: 14492631--14492665 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14492621 ATTATTAAGA
*
14492631 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14492648 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14492666 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14492921 original size:16 final size:16
Alignment explanation
Indices: 14492900--14492969 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
14492890 TTGATTTGCT
* *
14492900 ATTACACATCTATTCC
1 ATTACACCTCTAATCC
*
14492916 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
14492932 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
14492948 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
14492964 AATACA
1 ATTACA
14492970 GTGAACCAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:14499394 original size:25 final size:25
Alignment explanation
Indices: 14499364--14499411 Score: 80
Period size: 24 Copynumber: 1.9 Consensus size: 25
14499354 ACCATTATCC
14499364 TTCCTTCTTTTTTTTTCTT-TTTCTT
1 TTCCTTC-TTTTTTTTCTTCTTTCTT
14499389 TTCCTTCTTTTTTTTCTTCTTTC
1 TTCCTTCTTTTTTTTCTTCTTTC
14499412 AAGGATTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (25 bp):
TTCCTTCTTTTTTTTCTTCTTTCTT
Found at i:14499402 original size:12 final size:12
Alignment explanation
Indices: 14499364--14499410 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
14499354 ACCATTATCC
14499364 TTCCTTCTTTTTT
1 TTCCTTC-TTTTT
*
14499377 TTTCTT-TTTCTT
1 TTCCTTCTTT-TT
14499389 TTCCTTCTTTTT
1 TTCCTTCTTTTT
*
14499401 TTTCTTCTTT
1 TTCCTTCTTT
14499411 CAAGGATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 3 0.10
12 18 0.62
13 8 0.28
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (12 bp):
TTCCTTCTTTTT
Found at i:14503840 original size:37 final size:37
Alignment explanation
Indices: 14503790--14503898 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
14503780 CTTTAGCTCA
* *
14503790 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
14503827 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
14503864 GACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACC
14503899 TGGAATATAT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:14504108 original size:50 final size:48
Alignment explanation
Indices: 14504048--14504191 Score: 191
Period size: 50 Copynumber: 2.9 Consensus size: 48
14504038 GCACATCGCC
*
14504048 TACATGTTTCACACTAGCCATTCGGCTTTACCACATATA-CATATCTCATA
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATAGCATATCTC--A
* *
14504098 TATATATTTCACATTGACCATTCGGCTTTACCACATATATGCATATCTCA
1 TACATATTTCACATAG-CCATTCGGCTTTACCACATATA-GCATATCTCA
14504148 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCAT
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATA-GCAT
14504192 GTTCATATTC
Statistics
Matches: 85, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
49 2 0.02
50 73 0.86
51 2 0.02
52 8 0.09
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATAGCCATTCGGCTTTACCACATATAGCATATCTCA
Found at i:14504177 original size:100 final size:96
Alignment explanation
Indices: 14504048--14504238 Score: 258
Period size: 100 Copynumber: 1.9 Consensus size: 96
14504038 GCACATCGCC
* *
14504048 TACATGTTTCACACTAGCCATTCGGCTTTACCACATATA-CATATCTCATATATATATTTCACAT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATAGCATAT-TCATAT-T-CA--TCACAT
*
14504112 TGACCATTCGGCTTTACCACATATATGCATATCTCA
61 TGACCATTCGGCCTTACCACATATATGCATATCTCA
* * *
14504148 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCATCACATTGGC
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA-GCATATTCATATTCATCACATTGAC
*
14504213 CATTCGGCCTTATCACATATATGCAT
65 CATTCGGCCTTACCACATATATGCAT
14504239 GTTCACATTC
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
97 33 0.40
99 1 0.01
100 38 0.46
101 6 0.07
102 4 0.05
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.36
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATAGCATATTCATATTCATCACATTGACC
ATTCGGCCTTACCACATATATGCATATCTCA
Found at i:14504228 original size:22 final size:22
Alignment explanation
Indices: 14504202--14504273 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
14504192 GTTCATATTC
14504202 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
14504224 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
14504248 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
14504271 ATC
1 ATC
14504274 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:14504230 original size:47 final size:47
Alignment explanation
Indices: 14504106--14504302 Score: 234
Period size: 47 Copynumber: 4.1 Consensus size: 47
14504096 TATATATATT
* * *
14504106 TCACATTGACCATTCGGCTTTACCACATATATGCATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATAT-TC--ACAT-TCA
* * * *
14504156 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
* *
14504203 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
* * * *
14504250 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
14504297 TCACAT
1 TCACAT
14504303 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 95 0.71
49 2 0.02
50 35 0.26
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
Found at i:14506988 original size:47 final size:47
Alignment explanation
Indices: 14506945--14507040 Score: 167
Period size: 47 Copynumber: 2.0 Consensus size: 47
14506935 TTTAATTATT
14506945 AATTTATTATTTTACCCTTTAAAAAT-CATTAAAAGCTCCTAATTAAC
1 AATTTATTATTTTACCCTTT-AAAATCCATTAAAAGCTCCTAATTAAC
*
14506992 AATTTATTATTTTACCCTTTAAAATCCATTAAAAGTTCCTAATTAAC
1 AATTTATTATTTTACCCTTTAAAATCCATTAAAAGCTCCTAATTAAC
14507039 AA
1 AA
14507041 GCCTTCCACT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 5 0.11
47 42 0.89
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.41
Consensus pattern (47 bp):
AATTTATTATTTTACCCTTTAAAATCCATTAAAAGCTCCTAATTAAC
Found at i:14518297 original size:27 final size:27
Alignment explanation
Indices: 14518267--14518320 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
14518257 TCATACAACC
* *
14518267 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
*
14518294 CATGTAACAATAATTTACCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
14518321 TCACATGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:14524024 original size:15 final size:17
Alignment explanation
Indices: 14523991--14524030 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
14523981 AAAATATTTT
14523991 AAATAATT-TAATATAA
1 AAATAATTATAATATAA
14524007 AAATAATTAT-AT-TAA
1 AAATAATTATAATATAA
14524022 AAAT-ATTAT
1 AAATAATTAT
14524031 TAAATTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 5 0.22
15 7 0.30
16 10 0.43
17 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATAATTATAATATAA
Found at i:14524256 original size:16 final size:16
Alignment explanation
Indices: 14524235--14524301 Score: 98
Period size: 16 Copynumber: 4.2 Consensus size: 16
14524225 TGAATTTCTG
*
14524235 ATTACAGCTCTATTAC
1 ATTACAGCTCTATTCC
* *
14524251 ATTACAACTTTATTCC
1 ATTACAGCTCTATTCC
14524267 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
14524283 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
14524299 ATT
1 ATT
14524302 CCAGTGAGCC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.28, C:0.25, G:0.04, T:0.42
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:14535927 original size:5 final size:5
Alignment explanation
Indices: 14535917--14535948 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
14535907 TAGTGTGTTC
14535917 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
14535949 TCATAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:14535931 original size:9 final size:9
Alignment explanation
Indices: 14535917--14535947 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
14535907 TAGTGTGTTC
14535917 TTTATTTTA
1 TTTATTTTA
14535926 TTTATTTTA
1 TTTATTTTA
14535935 TTTTATTTTA
1 -TTTATTTTA
14535945 TTT
1 TTT
14535948 TTCATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:14540379 original size:5 final size:5
Alignment explanation
Indices: 14540369--14540400 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
14540359 TTGCGTGTTC
14540369 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
14540401 TCACACTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:14540383 original size:9 final size:9
Alignment explanation
Indices: 14540369--14540399 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
14540359 TTGCGTGTTC
14540369 TTTATTTTA
1 TTTATTTTA
14540378 TTTATTTTA
1 TTTATTTTA
14540387 TTTTATTTTA
1 -TTTATTTTA
14540397 TTT
1 TTT
14540400 TTCACACTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:14543791 original size:18 final size:18
Alignment explanation
Indices: 14543768--14543802 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14543758 GGATGCGATA
*
14543768 TTGTCCAGAGTGACTAAG
1 TTGTCCAGAGTCACTAAG
*
14543786 TTGTCCATAGTCACTAA
1 TTGTCCAGAGTCACTAA
14543803 AGAAGTTGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (18 bp):
TTGTCCAGAGTCACTAAG
Found at i:14553384 original size:47 final size:47
Alignment explanation
Indices: 14553326--14553441 Score: 115
Period size: 47 Copynumber: 2.4 Consensus size: 47
14553316 GAGAGCCAAC
* * *
14553326 GTAAGACCATGTCTGGCATATGGAATCGACATTCAGACGAGTGCTAGT
1 GTAAGA-CATGTCTGGCACATGGAATCGACATTCAAACGAGTGCTAAT
* * * * * * *
14553374 GTATGACATGTTTGGGACATGGCATTGGCATTGAAACGAGTGCTAAT
1 GTAAGACATGTCTGGCACATGGAATCGACATTCAAACGAGTGCTAAT
* *
14553421 GTAAGACATGTTTGGGACATG
1 GTAAGACATGTCTGGCACATG
14553442 CTTCGGCCTC
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
47 52 0.91
48 5 0.09
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (47 bp):
GTAAGACATGTCTGGCACATGGAATCGACATTCAAACGAGTGCTAAT
Found at i:14553501 original size:46 final size:47
Alignment explanation
Indices: 14553420--14553590 Score: 140
Period size: 46 Copynumber: 3.6 Consensus size: 47
14553410 CGAGTGCTAA
* *
14553420 TGTAAGA-CATGTTTGGGACATGCTTCGGCCT-CGAGATGTAAGCCAG
1 TGTAAGACCATGTCTGGGACATGCATCGG-CTACGAGATGTAAGCCAG
* *
14553466 TGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGAGGT--GTCAG
1 TGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTAAGCCAG
* * * **
14553510 TGTAAGACCATATCTGAGG-CATGACATCGACATA-GATATGCTAGAGCTTG
1 TGTAAGACCATGTCTG-GGACATG-CATCGGC-TACGAGATG-TA-AGCCAG
*
14553560 TGTAAGACCATGTCGGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACAT-GCATCGGC
14553591 ACTTGACCCC
Statistics
Matches: 100, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
44 11 0.11
45 13 0.13
46 45 0.45
47 3 0.03
49 2 0.02
50 25 0.25
51 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTAAGCCAG
Found at i:14554680 original size:21 final size:20
Alignment explanation
Indices: 14554654--14554694 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
14554644 TTAGAATTAA
14554654 TTCCACACGGGCGTGTTGCCC
1 TTCCACACGGGCGTG-TGCCC
14554675 TTCCACACGGGCGTGTGCCC
1 TTCCACACGGGCGTGTGCCC
14554695 CATTTCAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.10, C:0.39, G:0.29, T:0.22
Consensus pattern (20 bp):
TTCCACACGGGCGTGTGCCC
Found at i:14555010 original size:8 final size:8
Alignment explanation
Indices: 14554997--14555021 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14554987 AAATTAGCCC
14554997 TCACATTT
1 TCACATTT
14555005 TCACATTT
1 TCACATTT
14555013 TCACATTT
1 TCACATTT
14555021 T
1 T
14555022 AGTCCATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:14557091 original size:22 final size:22
Alignment explanation
Indices: 14557066--14557110 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
14557056 CTTCAATCAT
*
14557066 TCAAGCATTAT-AAGCCAAGATA
1 TCAACCATTATAAAGCCAA-ATA
*
14557088 TCAACCATTTTAAAGCCAAATA
1 TCAACCATTATAAAGCCAAATA
14557110 T
1 T
14557111 ATACATGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (22 bp):
TCAACCATTATAAAGCCAAATA
Found at i:14560303 original size:12 final size:15
Alignment explanation
Indices: 14560269--14560304 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
14560259 TATTTTTCTT
14560269 TTTCTTCTTGTCCCC
1 TTTCTTCTTGTCCCC
*
14560284 TTTCTTCTTGTCCCT
1 TTTCTTCTTGTCCCC
14560299 TTTCTT
1 TTTCTT
14560305 TTTATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.33, G:0.06, T:0.61
Consensus pattern (15 bp):
TTTCTTCTTGTCCCC
Found at i:14562666 original size:13 final size:12
Alignment explanation
Indices: 14562631--14562680 Score: 59
Period size: 13 Copynumber: 4.2 Consensus size: 12
14562621 AAAATAGAAC
14562631 TAAA-TTAAAT-
1 TAAATTTAAATA
*
14562641 TAAATTAAAATA
1 TAAATTTAAATA
14562653 TAAATCTTAAATA
1 TAAAT-TTAAATA
14562666 TTAAATTTAAATA
1 -TAAATTTAAATA
14562679 TA
1 TA
14562681 GTAAAGAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 4 0.12
11 5 0.15
12 7 0.21
13 13 0.38
14 5 0.15
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:14565691 original size:23 final size:23
Alignment explanation
Indices: 14565658--14565711 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
14565648 GCGTACATTT
*
14565658 CCTGTAAAGCCAGGTCCCATCTA
1 CCTGTACAGCCAGGTCCCATCTA
14565681 CCTGTACAGCCAGGTCCCATCTA
1 CCTGTACAGCCAGGTCCCATCTA
*
14565704 CCTATACA
1 CCTGTACA
14565712 AGCGGCTTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.26, C:0.37, G:0.15, T:0.22
Consensus pattern (23 bp):
CCTGTACAGCCAGGTCCCATCTA
Found at i:14567148 original size:42 final size:43
Alignment explanation
Indices: 14567062--14567271 Score: 212
Period size: 43 Copynumber: 4.9 Consensus size: 43
14567052 ATCGAGATGT
** *
14567062 GATTACATGTAAGAAAATGTCTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTACTGA
*
14567105 GATTACATGTCAGACCATGTCTGGG-CATTGGCATTGTACTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTACTGA
* * * *
14567147 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TACTGA
* * * * * *
14567190 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATA-TGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TACTGA
* * * *
14567233 GATAACATGTAAGACCATATCTGGGATA-TGACATTGTAC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAC
14567272 GAGCTTATGT
Statistics
Matches: 141, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
41 2 0.01
42 46 0.33
43 90 0.64
44 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTACTGA
Found at i:14567205 original size:85 final size:86
Alignment explanation
Indices: 14567052--14567258 Score: 222
Period size: 85 Copynumber: 2.4 Consensus size: 86
14567042 ACATTAGGTT
* * ** * * *
14567052 ATCGAGATGTGATTACATGTAAGAAAATGTCTGGGACATTGGCATTGTATTGAGATTACATGTCA
1 ATCGATATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAATGAGATTACATGTAA
*
14567117 GACCATGTCTGGG-CATTGGC
66 GACCATGTCTGGGACAGTGGC
* * * * *
14567137 ATTG-TACTGAGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-CGATTTCGTGT
1 ATCGATA-TGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAATGAGATTACATGT
*
14567200 AAGACCCTGTCTGGGACAGTGGC
64 AAGACCATGTCTGGGACAGTGGC
* * *
14567223 ATCGATATGTGATAACATGTAAGACCATATCTGGGA
1 ATCGATATGAGATTACATGTAAGACCATGTCTGGGA
14567259 TATGACATTG
Statistics
Matches: 99, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
84 1 0.01
85 59 0.60
86 37 0.37
87 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (86 bp):
ATCGATATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAATGAGATTACATGTAA
GACCATGTCTGGGACAGTGGC
Found at i:14578372 original size:18 final size:18
Alignment explanation
Indices: 14578336--14578375 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14578326 AATTATAATA
* **
14578336 TTGAATTGAACATTCGAT
1 TTGAATTAAACATGAGAT
14578354 TTGAATTAAACATGAGAT
1 TTGAATTAAACATGAGAT
14578372 TTGA
1 TTGA
14578376 GTACATTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (18 bp):
TTGAATTAAACATGAGAT
Found at i:14578552 original size:21 final size:20
Alignment explanation
Indices: 14578526--14578603 Score: 86
Period size: 21 Copynumber: 3.9 Consensus size: 20
14578516 GTGGATCAGC
14578526 TCTTACGAGCTTCTGTTAAG
1 TCTTACGAGCTTCTGTTAAG
* *
14578546 ATCTTACGAGCTTTTGTTCAAC
1 -TCTTACGAGCTTCTGTT-AAG
* *
14578568 TCTTATGAGCTTCTGTTTAG
1 TCTTACGAGCTTCTGTTAAG
*
14578588 -CTTTCGAGCTTCTGTT
1 TCTTACGAGCTTCTGTT
14578604 GGTGTTTTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 14 0.29
20 1 0.02
21 31 0.65
22 2 0.04
ACGTcount: A:0.17, C:0.21, G:0.18, T:0.45
Consensus pattern (20 bp):
TCTTACGAGCTTCTGTTAAG
Found at i:14581034 original size:28 final size:28
Alignment explanation
Indices: 14580978--14581037 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
14580968 TCCTCAACAT
* * *
14580978 AATTCACAGGTGGCTTACTTTGAGCATC
1 AATTCACAAGTGGCTCACTTTAAGCATC
* *
14581006 AATTCACAAGTGGCTCATTTTAAGTATC
1 AATTCACAAGTGGCTCACTTTAAGCATC
14581034 AATT
1 AATT
14581038 TATCATTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (28 bp):
AATTCACAAGTGGCTCACTTTAAGCATC
Found at i:14581848 original size:2 final size:2
Alignment explanation
Indices: 14581843--14581874 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14581833 ATATTGGCTT
14581843 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14581875 AAAGTAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14583095 original size:42 final size:42
Alignment explanation
Indices: 14583021--14583164 Score: 137
Period size: 42 Copynumber: 3.3 Consensus size: 42
14583011 AGATGGTAAG
* *
14583021 CAAATATTATACGAA-TAAAATAAATATTCCTTAACATGATAAA
1 CAAATATTATAC-AAGTCAAA-AAATAATCCTTAACATGATAAA
* * *
14583064 TAAATATTATACAAGTCAAAAAATAATCCTTAAGATGGTAAA
1 CAAATATTATACAAGTCAAAAAATAATCCTTAACATGATAAA
* * * * * *
14583106 CAAATATTTTACAAGTACAAAAAAAATATTTCTTAAGATGCTAGA
1 CAAATATTATACAAGT-C--AAAAAATAATCCTTAACATGATAAA
14583151 CAAATATTATACAA
1 CAAATATTATACAA
14583165 ATACTAAAAC
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
42 35 0.41
43 16 0.19
45 34 0.40
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (42 bp):
CAAATATTATACAAGTCAAAAAATAATCCTTAACATGATAAA
Found at i:14583145 original size:45 final size:44
Alignment explanation
Indices: 14583011--14583505 Score: 269
Period size: 45 Copynumber: 11.4 Consensus size: 44
14583001 CCCTATGCTG
* * * *
14583011 AGATGGTAAGCAAATATTATACGAAT--AAAATAAATATTCCTTA
1 AGATGCTAAACAAATATTATAC-AATACAAAAAAAATATTTCTTA
* * * * *
14583054 ACATGATAAATAAATATTATACAAGT-C--AAAAAATAATCCTTA
1 AGATGCTAAACAAATATTATACAA-TACAAAAAAAATATTTCTTA
* *
14583096 AGATGGTAAACAAATATTTTACAAGTACAAAAAAAATATTTCTTA
1 AGATGCTAAACAAATATTATACAA-TACAAAAAAAATATTTCTTA
* * * *
14583141 AGATGCTAGACAAATATTATACAAATACTAAAACAATATTTCAT-
1 AGATGCTAAACAAATATTATAC-AATACAAAAAAAATATTTCTTA
* ** * * * *
14583185 CGACTAATAAACATATATTATACGAATAGAAACAAAATATTTCTTC
1 AGA-TGCTAAACAAATATTATAC-AATACAAAAAAAATATTTCTTA
* * * * *
14583231 ATATGCTAAACAAATATTTTACAAATACTAAAAAAAA-A-ATCATC
1 AGATGCTAAACAAATATTATAC-AATAC-AAAAAAAATATTTCTTA
* * *
14583275 AGCTGCTAAACAAAAATTATACGAAT--AAAAAAAATATTTCTTC
1 AGATGCTAAACAAATATTATAC-AATACAAAAAAAATATTTCTTA
* * * * *
14583318 ATATGCTAAACAAATATTTTAAGAATACTAAAAAAA-ATTTCATCA
1 AGATGCTAAACAAATATTAT-ACAATACAAAAAAAATATTTC-TTA
* * * * * *
14583363 A-CTGCTAAACAAA-A-GATATAAGA-ATAAAAAATATTTCTTT
1 AGATGCTAAACAAATATTATACAATACAAAAAAAATATTTCTTA
* * * *
14583403 ATATGCTAAACAAATATTTTACGAATACTGAAAAAAA-ATTTCATCA
1 AGATGCTAAACAAATATTATAC-AATAC-AAAAAAAATATTTC-TTA
* *
14583449 A-CTGCTAAACAAAAATTATACGAAT--AAAAAAAA-A-TTCTTCA
1 AGATGCTAAACAAATATTATAC-AATACAAAAAAAATATTTCTT-A
14583490 A-ATGCTAAACAAATAT
1 AGATGCTAAACAAATAT
14583506 GCTAGGAAAA
Statistics
Matches: 348, Mismatches: 80, Indels: 50
0.73 0.17 0.10
Matches are distributed among these distances:
40 9 0.03
41 46 0.13
42 48 0.14
43 46 0.13
44 47 0.14
45 134 0.39
46 18 0.05
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.29
Consensus pattern (44 bp):
AGATGCTAAACAAATATTATACAATACAAAAAAAATATTTCTTA
Found at i:14583328 original size:87 final size:87
Alignment explanation
Indices: 14583124--14583505 Score: 515
Period size: 87 Copynumber: 4.4 Consensus size: 87
14583114 TTACAAGTAC
* * * * * *
14583124 AAAAAAAATATTTCTTAAGATGCTAGACAAATATTATACAAATACTAAAACAATATTTCATCGAC
1 AAAAAAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACTAAAA-AAAATTTCATCAAC
** * *
14583189 TAATAAACATATATTATACGAAT
65 TGCTAAACAAAAATTATACGAAT
** *
14583212 AGAAACAAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACTAAAAAAAAAATCATCAG
1 A-AAA-AAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACTAAAAAAAATTTCATCAA
14583277 CTGCTAAACAAAAATTATACGAAT
64 CTGCTAAACAAAAATTATACGAAT
14583301 AAAAAAAATATTTCTTCATATGCTAAACAAATATTTTA-AGAATACTAAAAAAAATTTCATCAAC
1 AAAAAAAATATTTCTTCATATGCTAAACAAATATTTTACA-AATACTAAAAAAAATTTCATCAAC
*
14583365 TGCTAAACAAAAGA-TATAAGAAT
65 TGCTAAACAAAA-ATTATACGAAT
* *
14583388 --AAAAAATATTTCTTTATATGCTAAACAAATATTTTACGAATACTGAAAAAAAATTTCATCAAC
1 AAAAAAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACT-AAAAAAAATTTCATCAAC
14583451 TGCTAAACAAAAATTATACGAAT
65 TGCTAAACAAAAATTATACGAAT
*
14583474 AAAAAAAA-A-TTCTTCAAATGCTAAACAAATAT
1 AAAAAAAATATTTCTTCATATGCTAAACAAATAT
14583506 GCTAGGAAAA
Statistics
Matches: 263, Mismatches: 22, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
85 42 0.16
86 60 0.23
87 76 0.29
88 11 0.04
89 32 0.12
90 42 0.16
ACGTcount: A:0.53, C:0.13, G:0.05, T:0.29
Consensus pattern (87 bp):
AAAAAAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACTAAAAAAAATTTCATCAACT
GCTAAACAAAAATTATACGAAT
Found at i:14583391 original size:41 final size:40
Alignment explanation
Indices: 14583259--14583502 Score: 186
Period size: 41 Copynumber: 5.8 Consensus size: 40
14583249 TTACAAATAC
** *
14583259 TAAAAAAAAAATCATCAGCTGCTAAACAAAAATTATACGAA
1 TAAAAAAAATTTCATCAACTGCTAAACAAAAA-TATACGAA
* * * *
14583300 TAAAAAAAATATTTCTTCATA-TGCTAAACAAATATTTTAAGAATA
1 T-AAAAAAA-ATTTCATCA-ACTGCTAAACAAA-AATATACG-A-A
*
14583345 CTAAAAAAAATTTCATCAACTGCTAAACAAAAGATATAAGAA
1 -TAAAAAAAATTTCATCAACTGCTAAACAAAA-ATATACGAA
* * * * *
14583387 TAAAAAATATTTCTTTATA-TGCTAAACAAATATTTTACGAATA
1 TAAAAAAAATTTCATCA-ACTGCTAAACAAA-AATATACG-A-A
14583430 CTGAAAAAAAATTTCATCAACTGCTAAACAAAAATTATACGAA
1 -T-AAAAAAAATTTCATCAACTGCTAAACAAAAA-TATACGAA
* * *
14583473 TAAAAAAAAATTCTTCAAATGCTAAACAAA
1 TAAAAAAAATTTCATCAACTGCTAAACAAA
14583503 TATGCTAGGA
Statistics
Matches: 162, Mismatches: 24, Indels: 34
0.74 0.11 0.15
Matches are distributed among these distances:
41 56 0.35
42 12 0.07
43 26 0.16
44 30 0.19
45 37 0.23
46 1 0.01
ACGTcount: A:0.54, C:0.13, G:0.06, T:0.27
Consensus pattern (40 bp):
TAAAAAAAATTTCATCAACTGCTAAACAAAAATATACGAA
Found at i:14583523 original size:86 final size:87
Alignment explanation
Indices: 14583124--14583523 Score: 472
Period size: 86 Copynumber: 4.6 Consensus size: 87
14583114 TTACAAGTAC
* * * * * * * *
14583124 AAAAAAAATATTTCTTAAGATGCTAGACAAATATTATACAAATACTAAAACAATATTTCATCGAC
1 AAAAAAAATATTTCTTCATATGCTAAACAAATATTTTAGAAA-ACTAAAAAAAAATTTCATCAAC
** * *
14583189 TAATAAACATATATTATACGAAT
65 TGCTAAACAAAAATTATACGAAT
* *
14583212 AGAAACAAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACTAAAAAAAAA-ATCATCA
1 A-AAA-AAAATATTTCTTCATATGCTAAACAAATATTTTAGAAA-ACTAAAAAAAAATTTCATCA
*
14583276 GCTGCTAAACAAAAATTATACGAAT
63 ACTGCTAAACAAAAATTATACGAAT
*
14583301 AAAAAAAATATTTCTTCATATGCTAAACAAATATTTTAAGAATACT-AAAAAAAATTTCATCAAC
1 AAAAAAAATATTTCTTCATATGCTAAACAAATATTTT-AGAAAACTAAAAAAAAATTTCATCAAC
*
14583365 TGCTAAACAAAAGA-TATAAGAAT
65 TGCTAAACAAAA-ATTATACGAAT
* * *
14583388 --AAAAAATATTTCTTTATATGCTAAACAAATATTTTACGAATACTGAAAAAAAATTTCATCAAC
1 AAAAAAAATATTTCTTCATATGCTAAACAAATATTTTA-GAAAACTAAAAAAAAATTTCATCAAC
14583451 TGCTAAACAAAAATTATACGAAT
65 TGCTAAACAAAAATTATACGAAT
* **
14583474 AAAAAAAA-A-TTCTTCAAATGCTAAACAAATATGCTAGGAAAACTAAAAAA
1 AAAAAAAATATTTCTTCATATGCTAAACAAATATTTTA-GAAAACTAAAAAA
14583524 TACTAAAGAA
Statistics
Matches: 275, Mismatches: 27, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
84 1 0.00
85 42 0.15
86 80 0.29
87 64 0.23
88 14 0.05
89 29 0.11
90 45 0.16
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.28
Consensus pattern (87 bp):
AAAAAAAATATTTCTTCATATGCTAAACAAATATTTTAGAAAACTAAAAAAAAATTTCATCAACT
GCTAAACAAAAATTATACGAAT
Found at i:14585311 original size:56 final size:56
Alignment explanation
Indices: 14585236--14585368 Score: 160
Period size: 56 Copynumber: 2.4 Consensus size: 56
14585226 CATGTCCCAG
* * * **
14585236 CCCGTGT-CTATGCCTGTGTGAATATACTGACTTGGGACACACGGCCAAGCCACATG
1 CCCGTGTGCTAGGCC-GTGTGAATATACTGACTTAGGACACACGGCCAAACCACACA
* * *
14585292 CTCGTGTGCTAGGCCGTGTGAGTATACTGACTTAGGTCACACGGCCAAACCACACA
1 CCCGTGTGCTAGGCCGTGTGAATATACTGACTTAGGACACACGGCCAAACCACACA
* *
14585348 CCCGTATGCTAGGCCATGTGA
1 CCCGTGTGCTAGGCCGTGTGA
14585369 GCAATTTGAG
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
56 59 0.91
57 6 0.09
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (56 bp):
CCCGTGTGCTAGGCCGTGTGAATATACTGACTTAGGACACACGGCCAAACCACACA
Found at i:14586465 original size:25 final size:25
Alignment explanation
Indices: 14586437--14586500 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
14586427 TGAGCAGGTA
* * *
14586437 AATGGGAAGCTCTTCTGAGTTATAT
1 AATGGGAAGCTCATCTGAGCTAAAT
*
14586462 AATGGGAAGCTCATGTGAGCTAAAT
1 AATGGGAAGCTCATCTGAGCTAAAT
*
14586487 AACGGGAAGCTCAT
1 AATGGGAAGCTCAT
14586501 GCAAGTTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (25 bp):
AATGGGAAGCTCATCTGAGCTAAAT
Found at i:14588223 original size:25 final size:24
Alignment explanation
Indices: 14588189--14588274 Score: 95
Period size: 25 Copynumber: 3.5 Consensus size: 24
14588179 TACCGATTTT
* *
14588189 AGCTCTTATGAGCTTACCGATACTC
1 AGCTCGTATGAGCTTACCGTTA-TC
14588214 AGCTCGTATGAGCTTACCGTTATTC
1 AGCTCGTATGAGCTTACCGTTA-TC
*
14588239 AGCTCAG-AGGAGCTTACCGGTTAT-
1 AGCTC-GTATGAGCTTACC-GTTATC
14588263 AGCTCGTATGAG
1 AGCTCGTATGAG
14588275 TATACATGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
23 1 0.02
24 9 0.17
25 38 0.72
26 5 0.09
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (24 bp):
AGCTCGTATGAGCTTACCGTTATC
Found at i:14589474 original size:56 final size:56
Alignment explanation
Indices: 14589356--14589490 Score: 171
Period size: 56 Copynumber: 2.4 Consensus size: 56
14589346 TTTTAAAGAG
* ** *
14589356 CACAAGTCAGTATGCTCACACGGTTTAGCACACAGGCTTATGGCTTGGCCATGTGA
1 CACAAGTCAGTATACTCACACGGCCTAGCACACAGGCGTATGGCTTGGCCATGTGA
* * * * *
14589412 CCCAAGTCAGTATACTCACACGGCCTAGCACACGGGCGTATGGCTTGGTCGTGTGT
1 CACAAGTCAGTATACTCACACGGCCTAGCACACAGGCGTATGGCTTGGCCATGTGA
* *
14589468 CACAAGTTAGTATACCCACACGG
1 CACAAGTCAGTATACTCACACGG
14589491 GCACGGACAT
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (56 bp):
CACAAGTCAGTATACTCACACGGCCTAGCACACAGGCGTATGGCTTGGCCATGTGA
Found at i:14593570 original size:3 final size:3
Alignment explanation
Indices: 14593562--14593589 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
14593552 GTGGCCATAC
14593562 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
14593590 TAGAAGTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:14599748 original size:25 final size:24
Alignment explanation
Indices: 14599700--14599749 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
14599690 TCCCTAGATA
* *
14599700 TGTTTAATCTCATAATTTGATGGG
1 TGTTTAATCTCATAAATTAATGGG
*
14599724 TGTTTTATCTCATAAATTAACTGGG
1 TGTTTAATCTCATAAATTAA-TGGG
14599749 T
1 T
14599750 TGGAGTTATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.46
Consensus pattern (24 bp):
TGTTTAATCTCATAAATTAATGGG
Found at i:14606328 original size:20 final size:20
Alignment explanation
Indices: 14606286--14606324 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
14606276 TAGATGAGTT
14606286 TAAAATTATAAAAAAAATTA
1 TAAAATTATAAAAAAAATTA
*
14606306 TAAAA-TATAAAAAATATTA
1 TAAAATTATAAAAAAAATTA
14606325 ATAATTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAATTATAAAAAAAATTA
Found at i:14607873 original size:24 final size:22
Alignment explanation
Indices: 14607818--14607907 Score: 60
Period size: 23 Copynumber: 4.0 Consensus size: 22
14607808 AAATATGTAC
* * *
14607818 ATATATAAAAATAAATACGTGAT
1 ATATATAAAAAT-ATTACATAAT
14607841 A-ATATTAAAAATATGTACATAAT
1 ATATA-TAAAAATAT-TACATAAT
*
14607864 ATAGTGTAAAAA-A-TACATACAT
1 ATA-TATAAAAATATTACATA-AT
*
14607886 ATATATTAAAATATATACATAA
1 ATATATAAAAATAT-TACATAA
14607908 GATAACATGT
Statistics
Matches: 53, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
21 12 0.23
22 10 0.19
23 17 0.32
24 13 0.25
25 1 0.02
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.32
Consensus pattern (22 bp):
ATATATAAAAATATTACATAAT
Found at i:14607975 original size:23 final size:25
Alignment explanation
Indices: 14607846--14607988 Score: 95
Period size: 25 Copynumber: 5.9 Consensus size: 25
14607836 GTGATAATAT
* *
14607846 TAAAA-ATATGTACATAATATAGTG
1 TAAAATATATATACATAATATAGTA
* *
14607870 TAAAAAATACATACAT-ATATA-T-
1 TAAAATATATATACATAATATAGTA
* *
14607892 TAAAATATATACATAAGATAACAT-GTA
1 TAAAATATAT--AT-ACATAATATAGTA
* *
14607919 -AATATATATATAAATAATATAGTA
1 TAAAATATATATACATAATATAGTA
* * *
14607943 TTATAGATATATACATAA-A-AGTA
1 TAAAATATATATACATAATATAGTA
*
14607966 TAAAATATATATACGTAATATAG
1 TAAAATATATATACATAATATAG
14607989 AATTTAGAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 21
0.71 0.12 0.16
Matches are distributed among these distances:
22 8 0.09
23 26 0.28
24 19 0.21
25 27 0.29
26 12 0.13
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (25 bp):
TAAAATATATATACATAATATAGTA
Found at i:14608629 original size:30 final size:30
Alignment explanation
Indices: 14608536--14608631 Score: 147
Period size: 30 Copynumber: 3.2 Consensus size: 30
14608526 TAGGTACAAG
14608536 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
14608566 AGGTAGTGGAGCAAGTGTAGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
14608596 TGGTGGTGGAGCAATTGTGGCTAGTGGATT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
14608626 TGGTGG
1 TGGTGG
14608632 CGGCAAAGGC
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.19, C:0.06, G:0.47, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:14609428 original size:87 final size:87
Alignment explanation
Indices: 14609289--14609585 Score: 280
Period size: 87 Copynumber: 3.4 Consensus size: 87
14609279 GTGATCGTGA
* * * * * * *
14609289 GCTCAACTCATTTCTTGCAATATGAATTGACTCTTTAAAAACAGACA-T-TAAAATAGAAATTGA
1 GCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAAGCATAAATTGTAAAATAGAAATTGA
* * *
14609352 AAATAGCTCAGCACGTGAGCCAAG
65 AAATACCTCAG-ACGTGACCCGAG
* * **
14609376 GCTCAACTCACTTCTCGCAAAATGAGTTGATTTTTAAAA-CA-AAATTTGTAAAACAGATTTTGA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAGCATAAA-TTGTAAAATAGAAATTGA
* *
14609439 AAATACCTCGATATGTGACCCGAG
65 AAATACCTC-AGACGTGACCCGAG
* * * * **
14609463 GCTCAACTCATTTCTCGTAATATGAGTTGATTCTTGAAAAGCATAAATTGAAAAATCATTAATTG
1 GCTCAACTCACTTCTCGCAATATGAGTTGATT-TTTAAAAGCATAAATTGTAAAAT-AGAAATTG
*
14609528 AAAATACCTCAG-CGTGCCCCGAG
64 AAAATACCTCAGACGTGACCCGAG
* *
14609551 ACTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
14609586 TTGAAAAACA
Statistics
Matches: 170, Mismatches: 32, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
84 2 0.01
85 2 0.01
86 9 0.05
87 86 0.51
88 44 0.26
89 10 0.06
90 17 0.10
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.30
Consensus pattern (87 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAGCATAAATTGTAAAATAGAAATTGAA
AATACCTCAGACGTGACCCGAG
Found at i:14609567 original size:88 final size:86
Alignment explanation
Indices: 14609377--14609609 Score: 249
Period size: 88 Copynumber: 2.6 Consensus size: 86
14609367 TGAGCCAAGG
* * *
14609377 CTCAACTCACTTCTCGCAAAATGAGTTGATTTTTAAAACA-AAATTTGTAAAACAGATTTTGAAA
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACATAAA-TTG-AAAACACATTTTGAAA
* *
14609441 ATACCTCGATATGTGACCCGAGG
64 ATACCTCGATACGTGACCCGAGA
* *
14609464 CTCAACTCATTTCTCGTAATATGAGTTGATTCTTGAAAAGCATAAATTGAAAA-ATCATTAATTG
1 CTCAACTCACTTCTCGCAATATGAGTTGATT-TTGAAAA-CATAAATTGAAAACA-CATT--TTG
* *
14609528 AAAATACCTC-A-GCGTGCCCCGAGA
61 AAAATACCTCGATACGTGACCCGAGA
*
14609552 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAACAC
1 CTCAACTCACTTCTCGCAATATGAGTTGA---TTTTG-AAAACATAAATTGAAAACAC
14609610 CTCAGCGTGT
Statistics
Matches: 123, Mismatches: 12, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
87 29 0.24
88 48 0.39
89 6 0.05
90 33 0.27
91 7 0.06
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (86 bp):
CTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACATAAATTGAAAACACATTTTGAAAAT
ACCTCGATACGTGACCCGAGA
Found at i:14609642 original size:77 final size:76
Alignment explanation
Indices: 14609523--14610140 Score: 624
Period size: 77 Copynumber: 8.1 Consensus size: 76
14609513 AAAAATCATT
* * *
14609523 AATTGAAAATACCTCAGC--GTGCCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*
14609586 TTGAAAAACATA
65 TTGAAAAACAGA
14609598 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
**
14609663 TGATGAACAGA
66 TGAAAAACAGA
* * *
14609674 AATT-AAAACTACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTT
1 AATTGAAAAC-ACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
14609736 TTTGAAAAACAGA
64 TTTGAAAAACAGA
* *
14609749 AGTTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*
14609814 TTGACAAACAGA
65 TTGAAAAACAGA
* * * * * *
14609826 AATTGAAAAATACCTTAGCGTGTAAGCCAAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTT
1 AATTG-AAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
14609891 TTGAAAAATAGA
65 TTGAAAAACAGA
*
14609903 AATTGAAAACACCTCAGCATGT-----GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
14609962 TGAAAAACATAAATTGAGCAGA
66 TG------A-AAA---A-CAGA
* * * ** *
14609984 AATTGAAAATACCTCAACG-G-GTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
** *
14610047 TG---ATGATA
66 TGAAAAACAGA
* * ** *
14610055 AATTGAAAATACCTCA--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
14610118 TGAATTAAAATAGA
66 TG-A--AAAACAGA
14610132 AATTGAAAA
1 AATTGAAAA
14610141 TAGAAATGGA
Statistics
Matches: 463, Mismatches: 47, Indels: 64
0.81 0.08 0.11
Matches are distributed among these distances:
70 7 0.02
71 91 0.20
74 34 0.07
75 51 0.11
76 48 0.10
77 125 0.27
78 48 0.10
80 2 0.00
81 19 0.04
84 32 0.07
85 6 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (76 bp):
AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TGAAAAACAGA
Found at i:14609736 original size:151 final size:150
Alignment explanation
Indices: 14609523--14610120 Score: 689
Period size: 151 Copynumber: 3.9 Consensus size: 150
14609513 AAAAATCATT
* * * *
14609523 AATTGAAAATACCTCAGCGTGCCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* *
14609588 GAAAAACATAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
65 GAAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
14609653 GTTGATTTTTTGATGAACAGA
130 GTTGATTTTTTGATGAACAGA
*
14609674 AATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTT
1 AATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* * *
14609738 TGAAAAACAGAAGTTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCACAATATG
64 TGAAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
**
14609803 AGTTGATTTTTTTGACAAACAGA
129 AGTTGA-TTTTTTGATGAACAGA
* * * *
14609826 AATTGAAAAATACCTTAGCGTGTAAGCC-AAGGCTCAACTTACCTCTCGCAATATGAGTTGATTT
1 AATTG-AAAATACCTCAACGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
14609890 TTTGAAAAATAGAAATTGAAAACACCTCAGCATGT-----GAGGCTCAACTCACCTCTCGCAATA
62 TTTGAAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
* *
14609950 TGAGTTGATTTTTGAAAAACATAAATTGAGCAGA
127 TGAGTTGATTTTT--------T-GA-TGAACAGA
* * *
14609984 AATTGAAAATACCTCAACGGGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTG
1 AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
** * * ** *
14610049 ---ATGATAAATTGAAAATACCTCA--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAG
66 AAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
14610109 TTGATTTTTTGA
131 TTGATTTTTTGA
14610121 ATTAAAATAG
Statistics
Matches: 388, Mismatches: 36, Indels: 51
0.82 0.08 0.11
Matches are distributed among these distances:
146 1 0.00
147 1 0.00
148 5 0.01
149 32 0.08
150 8 0.02
151 122 0.31
152 36 0.09
153 11 0.03
154 40 0.10
155 104 0.27
156 3 0.01
157 15 0.04
158 10 0.03
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (150 bp):
AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGATGAACAGA
Found at i:14609906 original size:229 final size:221
Alignment explanation
Indices: 14609525--14609970 Score: 642
Period size: 229 Copynumber: 2.0 Consensus size: 221
14609515 AAATCATTAA
* * *
14609525 TTGAAAATACCTCAGCGTGCCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
1 TTGAAAACACCTCAGCGTGACCCGAGACTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGA
* * *
14609590 AAAACATAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
66 AAAACAGAAATTGAAAACACCTCAGCGTGTAACCCAAGGCTCAACTCACCTCTCGCAATATGAGT
** *
14609655 TGATTTTTTGATGAACAGAAATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
131 TGATTTTTTGAAAAACAGAAATTGAAAAC-ACCTCAACATG---TGAGGCTCAACTCACCTCTCG
14609719 CAACATGAGTTGATTTTTTTGAAAAACAGAAG
192 CAACATGAGTTGA--TTTTTGAAAAACAGAAG
*
14609751 TTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTT
1 TTGAAAACACCTCAGC--GTGACCCGAGACTCAACTCACCTCTCACAATATGAGTTGATTTTTTT
* * * * *
14609816 GACAAACAGAAATTGAAAAATACCTTAGCGTGTAAGCCAAGGCTCAACTTACCTCTCGCAATATG
64 GAAAAACAGAAATTG-AAAACACCTCAGCGTGTAACCCAAGGCTCAACTCACCTCTCGCAATATG
* *
14609881 AGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGC
128 AGTTGATTTTTTGAAAAACAGAAATTGAAAACACCTCAACATGTGAGGCTCAACTCACCTCTCGC
*
14609946 AATATGAGTTGATTTTTGAAAAACA
193 AACATGAGTTGATTTTTGAAAAACA
14609971 TAAATTGAGC
Statistics
Matches: 198, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
224 13 0.07
226 48 0.24
228 57 0.29
229 75 0.38
230 5 0.03
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (221 bp):
TTGAAAACACCTCAGCGTGACCCGAGACTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGA
AAAACAGAAATTGAAAACACCTCAGCGTGTAACCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACAGAAATTGAAAACACCTCAACATGTGAGGCTCAACTCACCTCTCGCAAC
ATGAGTTGATTTTTGAAAAACAGAAG
Found at i:14610014 original size:155 final size:155
Alignment explanation
Indices: 14609460--14610211 Score: 608
Period size: 151 Copynumber: 4.8 Consensus size: 155
14609450 TATGTGACCC
** * * * **
14609460 GAGGCTCAACTCATTTCTCGTAATATGAGTTGATTCTTGAAAAGCATAAATTGAAAAATCATTAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTG----A-CAGAAA
* * ** *
14609525 TTGAAAATACCTCAGCGTGCCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
61 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
* * *
14609590 AAAACATAAATTGAAAACACCTCAGCGTGT
126 AAAATAGAAATTGAAAACACCTCAGCATGT
*
14609620 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--------T-GA-TGAACAGAA
1 -----GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTG-ACAGAA
* *
14609675 ATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTT
60 ATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * *
14609739 GAAAAACAGAAGTTGAAAACACCTCAGCGTGT
124 GAAAAATAGAAATTGAAAACACCTCAGCATGT
* ***
14609771 GACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT--TTGAC---AA---ACAGAAA
1 -----GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGACAGAAA
* * ** *
14609828 TTGAAAAATACCTTAGCGTGTAAGC-CAAGGCTCAACTTACCTCTCGCAATATGAGTTGA-TTTT
61 TTG-AAAATACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
14609891 TTGAAAAATAGAAATTGAAAACACCTCAGCATGT
122 TTGAAAAATAGAAATTGAAAACACCTCAGCATGT
14609925 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAATTGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGA-CAGAAATTGA
* * **
14609990 AAATACCTCAACGGGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTTG-ATGA
65 AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
* *
14610053 T--AAATTGAAAATACCTCAATGTGACT-T
130 TAGAAATTGAAAACACCTC-A-G-CA-TGT
* *
14610080 GAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAATTAAA-ATAGAAATTGAAAATAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA--AAACAT--AAATTG---ACAG
* * * * *
14610144 AAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
58 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
14610207 TGAAA
123 TGAAA
14610212 CACATAAATT
Statistics
Matches: 503, Mismatches: 49, Indels: 74
0.80 0.08 0.12
Matches are distributed among these distances:
149 37 0.07
150 4 0.01
151 131 0.26
152 26 0.05
153 12 0.02
154 46 0.09
155 104 0.21
156 11 0.02
157 18 0.04
158 12 0.02
159 42 0.08
160 8 0.02
161 17 0.03
162 1 0.00
165 34 0.07
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (155 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGACAGAAATTGAA
AATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAT
AGAAATTGAAAACACCTCAGCATGT
Found at i:14610142 original size:13 final size:13
Alignment explanation
Indices: 14610120--14610153 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
14610110 TGATTTTTTG
14610120 AATT-AAAATAGA
1 AATTGAAAATAGA
14610132 AATTGAAAATAGA
1 AATTGAAAATAGA
*
14610145 AATGGAAAA
1 AATTGAAAA
14610154 CACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.21
Consensus pattern (13 bp):
AATTGAAAATAGA
Found at i:14610363 original size:75 final size:74
Alignment explanation
Indices: 14610237--14610554 Score: 349
Period size: 77 Copynumber: 4.3 Consensus size: 74
14610227 AAAAAAGAAA
* ** * *
14610237 TTAAAAACAGAATTTGAAAGGACTTC-GACGTGTGGCCCGAGACTCAACTCACCTCTCGCAATAT
1 TTAAAAACAGAAATTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATAT
*
14610301 GAGTTGATTCTT
63 GAGTTGATTTTT
14610313 TTAAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTAAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
14610378 GTTGATTTTTT
65 GTTGA-TTTTT
* * * * *
14610389 TGATAAAAATAGAATTTGAAAATATCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 T--TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
14610454 AGTTGA-TTTT
64 AGTTGATTTTT
* * * * ** *
14610464 TGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
14610527 TTGATTTTT
66 TTGATTTTT
* * *
14610536 TT-GAAACATAAATTAAAAA
1 TTAAAAACAGAAATTGAAAA
14610555 AACGAAAATT
Statistics
Matches: 210, Mismatches: 26, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
71 49 0.23
72 5 0.02
73 20 0.10
75 40 0.19
76 12 0.06
77 77 0.37
78 7 0.03
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
TTAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:14610441 original size:77 final size:76
Alignment explanation
Indices: 14610279--14610621 Score: 394
Period size: 77 Copynumber: 4.4 Consensus size: 76
14610269 TGGCCCGAGA
* * *
14610279 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTT-A-AAAAGCAGAAATTGAAAATACCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAA-AAGAAATTGAAAATACCTCAA
*
14610342 CGTGTCCCGAGG
65 CGTGTCCTGAGG
* *
14610354 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATATCTCAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAA-AGAAATTGAAAATACCTCAA
14610419 CGTGTCCTGAGG
65 CGTGTCCTGAGG
* * *
14610431 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAA-AAATTGAAATTACCTC-A-
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAAAGAAATTGAAAATACCTCAAC
* *
14610491 GCGTCTTGAGG
66 GTGTCCTGAGG
*
14610502 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAAACGAAAATTGA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG--------A-T-AAAAAA-G-AAATTGA
*
14610567 AAATACCTCAGCGTGTCCTGAGG
54 AAATACCTCAACGTGTCCTGAGG
14610590 CTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTT
14610622 GAAAAGCAGA
Statistics
Matches: 227, Mismatches: 21, Indels: 27
0.83 0.08 0.10
Matches are distributed among these distances:
71 37 0.16
72 1 0.00
73 19 0.08
74 1 0.00
75 46 0.20
76 1 0.00
77 61 0.27
81 1 0.00
83 5 0.02
86 15 0.07
88 40 0.18
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (76 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAAAGAAATTGAAAATACCTCAAC
GTGTCCTGAGG
Found at i:14610543 original size:71 final size:71
Alignment explanation
Indices: 14610279--14610554 Score: 327
Period size: 71 Copynumber: 3.7 Consensus size: 71
14610269 TGGCCCGAGA
* *
14610279 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTAAAAAGCAGAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTAGAAA-CAAAAATTGAAAATACCTCAGC-
*
14610344 TGTCCCGAGG
63 -GTCCTGAGG
* * *
14610354 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATATCTCAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAGA-AACAA-A-AA-TTGAAAATACCTC-A
*
14610419 CGTGTCCTGAGG
61 -GCGTCCTGAGG
* * *
14610431 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAGAAACAAAAATTGAAAATACCTCAGCGTC
*
14610496 TTGAGG
66 CTGAGG
* * * *
14610502 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAGAAACAAAAATTGAAAA
14610555 AACGAAAATT
Statistics
Matches: 173, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
71 55 0.32
72 1 0.01
73 11 0.06
74 8 0.05
75 35 0.20
76 6 0.03
77 55 0.32
78 1 0.01
79 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (71 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAGAAACAAAAATTGAAAATACCTCAGCGTC
CTGAGG
Found at i:14610755 original size:14 final size:13
Alignment explanation
Indices: 14610725--14610769 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
14610715 TGATTTTTAA
*
14610725 AAAAATAGAAATT
1 AAAAACAGAAATT
*
14610738 AAAAGCAGAAATT
1 AAAAACAGAAATT
14610751 GAAAAACAGAAATT
1 -AAAAACAGAAATT
14610765 AAAAA
1 AAAAA
14610770 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:14610790 original size:101 final size:101
Alignment explanation
Indices: 14610552--14610841 Score: 381
Period size: 101 Copynumber: 2.9 Consensus size: 101
14610542 CATAAATTAA
*
14610552 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * *
14610616 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTAAAAAACAGAAATTGAAAAGCAAAAATTG
*
14610651 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
14610716 GATTTTTAAAAAAATAGAAATT-AAAAGCAGAAATTG
66 GATTTTT-AAAAAACAGAAATTGAAAAGCAAAAATTG
* * * **
14610752 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGTTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
14610817 GATTTTTGAAAAGCATAAATTGAAA
66 GATTTTTAAAAAACAGAAATTGAAA
14610842 TTACCTCAGC
Statistics
Matches: 167, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
99 63 0.38
100 11 0.07
101 83 0.50
102 10 0.06
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTAAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:14610873 original size:73 final size:74
Alignment explanation
Indices: 14610749--14610917 Score: 241
Period size: 73 Copynumber: 2.3 Consensus size: 74
14610739 AAAGCAGAAA
* * * * **
14610749 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGTTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
14610814 GTTGA-TTT
66 GTTGATTTT
* * *
14610822 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
14610887 GTTGATTTTT
66 GTTGA-TTTT
14610897 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAGCATAAATTGAAAA
14610918 AACGGAAATT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
73 61 0.73
75 23 0.27
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:14620965 original size:16 final size:15
Alignment explanation
Indices: 14620939--14620973 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
14620929 TGATGTGAAT
14620939 AATATAAAATATTAA
1 AATATAAAATATTAA
*
14620954 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
14620970 AATA
1 AATA
14620974 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:14621144 original size:20 final size:20
Alignment explanation
Indices: 14621087--14621146 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
14621077 AATACTACAT
14621087 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
14621106 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
14621129 AAATATGTACATAATATA
1 AAATATGTACATAATATA
14621147 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:14621155 original size:25 final size:25
Alignment explanation
Indices: 14621100--14621333 Score: 117
Period size: 25 Copynumber: 9.5 Consensus size: 25
14621090 TATGTACATA
* * *
14621100 TATAAAAAATAAATACGTGATA-A-
1 TATAAAAAATATATACATAATATAG
* *
14621123 TATTAAAAATATGTACATAATATAG
1 TATAAAAAATATATACATAATATAG
* *
14621148 TGTAAAAAATACATACATAATATA-
1 TATAAAAAATATATACATAATATAG
* * *
14621172 -AT-TAAAATATATACATAAGATAACA
1 TATAAAAAATATATACATAATAT-A-G
* * *
14621197 TGTAAATATATATATAAATAATATAG
1 TATAAA-AAATATATACATAATATAG
* * * *
14621223 TATTATAGATATATACATAAAATAG
1 TATAAAAAATATATACATAATATAG
* *
14621248 TATAAAATATATATACGTAATATAG
1 TATAAAAAATATATACATAATATAG
* ** * *
14621273 AAT-TTAGA-ATATACCTAATATA-
1 TATAAAAAATATATACATAATATAG
* *
14621295 T-TAAAAGAATATATATATAATATAA
1 TATAAAA-AATATATACATAATATAG
*
14621320 TATTAAGAAATATA
1 TA-TAAAAAATATA
14621334 ATAATAACAA
Statistics
Matches: 155, Mismatches: 42, Indels: 25
0.70 0.19 0.11
Matches are distributed among these distances:
21 1 0.01
22 17 0.11
23 33 0.21
24 15 0.10
25 59 0.38
26 10 0.06
27 6 0.04
28 14 0.09
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
TATAAAAAATATATACATAATATAG
Done.