Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 51 of 311
Found at i:14621176 original size:48 final size:49
Alignment explanation
Indices: 14621102--14621333 Score: 154
Period size: 50 Copynumber: 4.7 Consensus size: 49
14621092 TGTACATATA
* * * * *
14621102 TAAAAAATAAATACGTGATA-ATATTAAAAATATGTACATAATATAGTG
1 TAAAAAATATATACATAATATATATTAAAAATATATACATAAAATAGTG
* * *
14621150 TAAAAAATACATACATAATATA-ATT-AAAATATATACATAAGATAACATG
1 TAAAAAATATATACATAATATATATTAAAAATATATACATAAAAT-A-GTG
* * * * *
14621199 TAAATATATATATAAATAATATAGTATTATAGATATATACATAAAATAGTA
1 TAAA-AAATATATACATAATATA-TATTAAAAATATATACATAAAATAGTG
* * * * * * *
14621250 TAAAATATATATACGTAATATAGAATT-TAGA-ATATACCTAATATA-T-
1 TAAAAAATATATACATAATATA-TATTAAAAATATATACATAAAATAGTG
*
14621296 TAAAAGAATATATATATAATATAATATTAAGAAATATA
1 TAAAA-AATATATACATAATAT-ATATTAA-AAATATA
14621334 ATAATAACAA
Statistics
Matches: 147, Mismatches: 25, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
46 5 0.03
47 33 0.22
48 34 0.23
49 13 0.09
50 38 0.26
51 5 0.03
52 4 0.03
53 15 0.10
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (49 bp):
TAAAAAATATATACATAATATATATTAAAAATATATACATAAAATAGTG
Found at i:14621315 original size:24 final size:23
Alignment explanation
Indices: 14621288--14621339 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
14621278 AGAATATACC
*
14621288 TAATATATTA-AAAGAATATATATA
1 TAATATAATATAAAGAA-ATATA-A
*
14621312 TAATATAATATTAAGAAATATAA
1 TAATATAATATAAAGAAATATAA
14621335 TAATA
1 TAATA
14621340 ACAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
TAATATAATATAAAGAAATATAA
Found at i:14621850 original size:18 final size:18
Alignment explanation
Indices: 14621827--14621880 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
14621817 ACAAGTGGTG
14621827 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
14621845 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
14621857 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
14621875 GTGGAG
1 GTGGAG
14621881 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:14621910 original size:18 final size:17
Alignment explanation
Indices: 14621827--14621910 Score: 53
Period size: 18 Copynumber: 5.4 Consensus size: 17
14621817 ACAAGTGGTG
14621827 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAA-TGTGGCTA
*
14621845 GTGGAG---T-AGG-TA
1 GTGGAGCAATGTGGCTA
14621857 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAA-TGTGGCTA
*
14621875 GTGGAG---T-TGG-TG
1 GTGGAGCAATGTGGCTA
14621887 GTGGAGCAATTGTGGCTA
1 GTGGAGCAA-TGTGGCTA
14621905 GTGGAG
1 GTGGAG
14621911 TTGGTGGCGG
Statistics
Matches: 50, Mismatches: 4, Indels: 24
0.64 0.05 0.31
Matches are distributed among these distances:
12 15 0.30
13 5 0.10
14 2 0.04
16 2 0.04
17 5 0.10
18 21 0.42
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.25
Consensus pattern (17 bp):
GTGGAGCAATGTGGCTA
Found at i:14621912 original size:30 final size:30
Alignment explanation
Indices: 14621822--14621917 Score: 165
Period size: 30 Copynumber: 3.2 Consensus size: 30
14621812 TAGGTACAAG
14621822 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
14621852 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
14621882 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
14621912 TGGTGG
1 TGGTGG
14621918 CGGCAAAGGC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:14622654 original size:19 final size:20
Alignment explanation
Indices: 14622617--14622655 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14622607 AAAACAAAGG
14622617 CAGAAAAGAGAGATAGAGAA
1 CAGAAAAGAGAGATAGAGAA
14622637 CAGAAACAGA-AG-TAGAGAA
1 CAGAAA-AGAGAGATAGAGAA
14622656 AAAAGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 8 0.44
21 3 0.17
ACGTcount: A:0.59, C:0.08, G:0.28, T:0.05
Consensus pattern (20 bp):
CAGAAAAGAGAGATAGAGAA
Found at i:14626096 original size:100 final size:100
Alignment explanation
Indices: 14625806--14626096 Score: 305
Period size: 100 Copynumber: 2.9 Consensus size: 100
14625796 AATAACTCCT
* * * * * * * *
14625806 ATATCCCTGGAGTTGCAGTGGAATGGATCAAAACTGCAGTAGCAAATCTCATGTCCATGTAGATG
1 ATATCCCTGAAGATGCAGTGGATTGGATTAAAACTACAGTAGCAAATCTCATCTTCATGAAGATG
* * * ** *
14625871 TAGTGGGGCTAGATGAAGTTATAAGCTCAAATCCT
66 TAGTGGGGCAAGATGAAGCTACAAATTCAAATCCC
** * ** * *
14625906 ATATCCCTGAAGATTTAATGGATCAGATTAAAACTTCAGTAGCAGATCTCATC-TCAATGAAGAT
1 ATATCCCTGAAGATGCAGTGGATTGGATTAAAACTACAGTAGCAAATCTCATCTTC-ATGAAGAT
* *
14625970 GCAGTGGGGCAAGATGAAGCTACAAATTGAAATCCC
65 GTAGTGGGGCAAGATGAAGCTACAAATTCAAATCCC
* * * *
14626006 GTATCCCTGAAGATGCAGTGGATTGGATTGAAACTACAGTAACAAATCTCATCTTCATAAAGATG
1 ATATCCCTGAAGATGCAGTGGATTGGATTAAAACTACAGTAGCAAATCTCATCTTCATGAAGATG
* *
14626071 TTGTGGAGCAAGATGAAGCTACAAAT
66 TAGTGGGGCAAGATGAAGCTACAAAT
14626097 CCTAAGTCCC
Statistics
Matches: 153, Mismatches: 36, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
99 1 0.01
100 150 0.98
101 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (100 bp):
ATATCCCTGAAGATGCAGTGGATTGGATTAAAACTACAGTAGCAAATCTCATCTTCATGAAGATG
TAGTGGGGCAAGATGAAGCTACAAATTCAAATCCC
Found at i:14628535 original size:47 final size:47
Alignment explanation
Indices: 14628471--14628583 Score: 217
Period size: 47 Copynumber: 2.4 Consensus size: 47
14628461 ATCCATAAGT
14628471 GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
*
14628518 GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTATATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
14628565 GAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAA
14628584 GGAGTTCGGA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
Found at i:14629049 original size:30 final size:30
Alignment explanation
Indices: 14629014--14629071 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
14629004 CCCTAGTATG
*
14629014 AACTTTGACAAAATTACTA-TTTTGCCCCTA
1 AACTTTCACAAAATTAC-ACTTTTGCCCCTA
* *
14629044 AACTTTCACATATTTACACTTTTGCCCC
1 AACTTTCACAAAATTACACTTTTGCCCC
14629072 AAGGCTCGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.29, C:0.28, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTCACAAAATTACACTTTTGCCCCTA
Found at i:14642518 original size:7 final size:7
Alignment explanation
Indices: 14642420--14642516 Score: 167
Period size: 7 Copynumber: 13.9 Consensus size: 7
14642410 TTGAAATTTC
14642420 TCAAGAT
1 TCAAGAT
14642427 TCAAGAT
1 TCAAGAT
14642434 TCAAGAT
1 TCAAGAT
14642441 TCAAGAT
1 TCAAGAT
14642448 TCAAGAT
1 TCAAGAT
14642455 TCAAGAT
1 TCAAGAT
14642462 TCAAGAT
1 TCAAGAT
14642469 TCAAGAT
1 TCAAGAT
*
14642476 TCAATAT
1 TCAAGAT
14642483 TCAAGAT
1 TCAAGAT
14642490 TCAAGAT
1 TCAAGAT
*
14642497 TCAAGAA
1 TCAAGAT
*
14642504 TCAAGAA
1 TCAAGAT
14642511 TCAAGA
1 TCAAGA
14642517 ATTTATTTTA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 87 1.00
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.27
Consensus pattern (7 bp):
TCAAGAT
Found at i:14644900 original size:22 final size:22
Alignment explanation
Indices: 14644890--14644943 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
14644880 TAAAATTACA
14644890 AAATCATATCTTCTAAGATTGC
1 AAATCATATCTTCTAAGATTGC
*
14644912 ATATCATATCTTCTAAGATTGC
1 AAATCATATCTTCTAAGATTGC
14644934 -AATCATATCT
1 AAATCATATCT
14644944 AAGATTGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 9 0.30
22 21 0.70
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (22 bp):
AAATCATATCTTCTAAGATTGC
Found at i:14644916 original size:17 final size:19
Alignment explanation
Indices: 14644901--14644992 Score: 122
Period size: 17 Copynumber: 4.9 Consensus size: 19
14644891 AATCATATCT
14644901 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14644920 TCTTCTAAGATTGCA-ATCATA
1 ---TCTAAGATTGCATATCATA
14644941 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
14644958 TCTAAGATTGCATATC--A
1 TCTAAGATTGCATATCATA
14644975 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
14644993 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 0, Indels: 13
0.83 0.00 0.17
Matches are distributed among these distances:
17 33 0.51
18 10 0.15
19 4 0.06
21 6 0.09
22 12 0.18
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14645144 original size:21 final size:20
Alignment explanation
Indices: 14645107--14645145 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
14645097 GAACTTGGAC
**
14645107 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
14645127 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
14645146 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:14645393 original size:45 final size:45
Alignment explanation
Indices: 14645338--14645668 Score: 441
Period size: 45 Copynumber: 7.4 Consensus size: 45
14645328 GGAAAGCGAT
* * ** * *
14645338 ATCTGCTATCTTTGATCTGCTCCCTATCTAATACAGAGATGCTAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
14645383 ATCTGTTATCTTCGATCTGCTCCCCGTCTAAAACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
14645428 ATCTGTTATCTTCGATCTGCTCCCCGTCTAAAACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
14645473 ATCTGCT-TCTTCAATCTGCTCCCTGTCTAATACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
14645517 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
14645562 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * **
14645606 ATCCGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
14645651 ATCTGTCATCTTGGATCT
1 ATCTGTTATCTTCGATCT
14645669 ACTTCGATGT
Statistics
Matches: 252, Mismatches: 32, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
44 79 0.31
45 173 0.69
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:14645522 original size:89 final size:89
Alignment explanation
Indices: 14645338--14645655 Score: 465
Period size: 89 Copynumber: 3.6 Consensus size: 89
14645328 GGAAAGCGAT
* * ** * * * *
14645338 ATCTGCTATCTTTGATCTGCTCCCTATCTAATACAGAGATGCTAAATCTGTTATCTTCGATCTGC
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCT-TCTTCAATCTGC
*
14645403 TCCCCGTCTAAAACAGAGACACCAA
65 TCCCCGTCTAATACAGAGACACCAA
*
14645428 ATCTGTTATCTTCGATCTGCTCCCCGTCTAAAACAGAGACGCCAAATCTGCTTCTTCAATCTGCT
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTTCTTCAATCTGCT
*
14645493 CCCTGTCTAATACAGAGACACCAA
66 CCCCGTCTAATACAGAGACACCAA
14645517 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTTCTTCAATCTGCT
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTTCTTCAATCTGCT
**
14645582 CCCCGTCTAATACAGAGATGCCAA
66 CCCCGTCTAATACAGAGACACCAA
* * * **
14645606 ATCCGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATACCAAATCTG
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
14645656 TCATCTTGGA
Statistics
Matches: 208, Mismatches: 20, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
89 164 0.79
90 44 0.21
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (89 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTTCTTCAATCTGCT
CCCCGTCTAATACAGAGACACCAA
Found at i:14645553 original size:134 final size:134
Alignment explanation
Indices: 14645338--14645668 Score: 475
Period size: 134 Copynumber: 2.5 Consensus size: 134
14645328 GGAAAGCGAT
* * * *
14645338 ATCTGCTATCTTTGATCTGCTCCCTATCTAATACAGAGATGCTAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCGATCTGCTCCCTGTCTAATACAGAGATACCAAATCTGTTATCTTCGATCTGC
* *
14645403 TCCCCGTCTAAAACAGAGACACCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAAAACAGAGAC
66 TCCCCGTCTAAAACAGAGACACCAAATCTGCT-TCTTCAATCTGCTCCCCGTCTAAAACAGAGAC
14645468 GCCAA
130 GCCAA
* *
14645473 ATCTGCT-TCTTCAATCTGCTCCCTGTCTAATACAGAGACACCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCGATCTGCTCCCTGTCTAATACAGAGATACCAAATCTGTTATCTTCGATCTGC
* * * *
14645537 TCCCCGTCTAATACAGAGACGCCAAATCTGCTTCTTCAATCTGCTCCCCGTCTAATACAGAGATG
66 TCCCCGTCTAAAACAGAGACACCAAATCTGCTTCTTCAATCTGCTCCCCGTCTAAAACAGAGACG
14645602 CCAA
131 CCAA
* * * * * * *
14645606 ATCCGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATACCAAATCTGTCATCTTGGATCT
1 ATCTGCTATCTTCGATCTGCTCCCTGTCTAATACAGAGATACCAAATCTGTTATCTTCGATCT
14645669 ACTTCGATGT
Statistics
Matches: 174, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
133 39 0.22
134 128 0.74
135 7 0.04
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (134 bp):
ATCTGCTATCTTCGATCTGCTCCCTGTCTAATACAGAGATACCAAATCTGTTATCTTCGATCTGC
TCCCCGTCTAAAACAGAGACACCAAATCTGCTTCTTCAATCTGCTCCCCGTCTAAAACAGAGACG
CCAA
Found at i:14645817 original size:78 final size:78
Alignment explanation
Indices: 14645685--14646213 Score: 803
Period size: 78 Copynumber: 6.8 Consensus size: 78
14645675 ATGTAAACAC
* * *
14645685 ATGAAGGT-CAGATCTGCTATGTCTTCGATTTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
14645749 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
14645763 ATAAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATGT
1 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
14645828 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * *
14645841 ATGAAGGTCTAATCTGTTATGTCTTTGATCTACTCCCTGTCTAATATAGAGATGCCAAATTATCT
1 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
14645906 TGGATCTGCTTCA
66 TGGATCTGCTTCA
14645919 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
14645984 TGGATCTGCTTCA
66 TGGATCTGCTTCA
14645997 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
14646062 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
14646075 ATGAAGGT-TAGATCTGCTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
14646139 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * * **
14646153 ATGAAGGT-CAGATCTGCTACGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
14646214 TGTTTCTTCG
Statistics
Matches: 415, Mismatches: 34, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
77 1 0.00
78 412 0.99
79 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:14646571 original size:121 final size:127
Alignment explanation
Indices: 14646415--14646690 Score: 348
Period size: 131 Copynumber: 2.2 Consensus size: 127
14646405 TTCCCCATCT
** * * * *
14646415 AATACAGAGATGCCAAATCATCTTGGATATCCTTCA-AT-GA-A-GGT-CC-AATCTATTATGTC
1 AATACAGAGATGTTAAATCATCTTAGATATCCTTCACATAAACACGGTACCAAATCCACTATGTC
* * *
14646474 TTTGATCTTCTCTCCGTCGAATATGGAGATGTCAAATCTGTTTCTTCGATTTGTTCTCTGAC
66 TTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGAC
* * * *
14646536 AATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCATAAACACGTTAAAGCCAAATCCGCTA
1 AATACAGAGATGTTAAATCATCTTAGATATCCTTCA-CATAAACACGGT--A-CCAAATCCACTA
14646601 TGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGA
62 TGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGA
14646666 C
127 C
*
14646667 AATACTGAGATGTTAAATCATCTT
1 AATACAGAGATGTTAAATCATCTT
14646691 GGATTCGCTT
Statistics
Matches: 131, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
121 31 0.24
123 2 0.02
124 1 0.01
125 1 0.01
126 2 0.02
130 2 0.02
131 92 0.70
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (127 bp):
AATACAGAGATGTTAAATCATCTTAGATATCCTTCACATAAACACGGTACCAAATCCACTATGTC
TTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGAC
Found at i:14646614 original size:298 final size:298
Alignment explanation
Indices: 14646077--14646616 Score: 893
Period size: 298 Copynumber: 1.8 Consensus size: 298
14646067 CTGCTTCAAT
* * * *
14646077 GAAGGTTAGATCTGCTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTTAGATCTACTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTG
* * *
14646142 GATCTGCTTCAATGAAGGTCAGATCTGCTACGTCTTCGATCTACTCTCCGTCGAATATGGAGATG
66 GATATCCTTCAATGAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGATG
14646207 CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTACTT
131 CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTACTT
* * *
14646272 CAGCATAAACACGTGAAAGCTAAATCTGCTATGTCTTTGATCTGCTCCTTGTCAACGCAAGGATG
196 CAGCATAAACACGTGAAAGCCAAATCCGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATG
14646337 CCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
261 CCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
* *
14646375 GAAGGTTAGATCTACTATGTCTTCGATTTGTTCCCCATCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTTAGATCTACTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTG
* * * *
14646440 GATATCCTTCAATGAAGGTCCA-ATCTATTATGTCTTTGATCTTCTCTCCGTCGAATATGGAGAT
66 GATATCCTTCAATGAAGGT-CAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGAT
* *
14646504 GTCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCT
130 GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTACT
*
14646569 TCAGCATAAACACGTTAAAGCCAAATCCGCTATGTCTTCGATCTGCTC
195 TCAGCATAAACACGTGAAAGCCAAATCCGCTATGTCTTCGATCTGCTC
14646617 TCCGTCGAAT
Statistics
Matches: 222, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
298 220 0.99
299 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (298 bp):
GAAGGTTAGATCTACTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTG
GATATCCTTCAATGAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGATG
CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTACTT
CAGCATAAACACGTGAAAGCCAAATCCGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATG
CCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
Found at i:14646710 original size:131 final size:131
Alignment explanation
Indices: 14646468--14646712 Score: 411
Period size: 131 Copynumber: 1.9 Consensus size: 131
14646458 TCCAATCTAT
* * *
14646468 TATGTCTTTGATCTTCTCTCCGTCGAATATGGAGATGTCAAATCTGTTTCTTCGATTTGTTCTCT
1 TATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCT
14646533 GACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCATAAACACGTTAAAGCCAAATCCG
66 GACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCATAAACACGTTAAAGCCAAATCCG
14646598 C
131 C
14646599 TATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCT
1 TATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCT
* * * *
14646664 GACAATACTGAGATGTTAAATCATCTTGGAT-TCGCTTTAGCTTAAACAC
66 GACAATACAGAGATGTTAAATCATCTTAGATCT-GCTTCAGCATAAACAC
14646713 CTGAAGGTTA
Statistics
Matches: 106, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
130 1 0.01
131 105 0.99
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (131 bp):
TATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCT
GACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCATAAACACGTTAAAGCCAAATCCG
C
Found at i:14656683 original size:47 final size:47
Alignment explanation
Indices: 14656605--14657158 Score: 925
Period size: 47 Copynumber: 11.7 Consensus size: 47
14656595 CCCTTCGGGA
* * * * * *
14656605 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14656652 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14656699 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14656748 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14656794 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14656840 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14656887 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14656934 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14656983 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14657030 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14657077 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
14657124 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
14657159 AGAATCCTAA
Statistics
Matches: 483, Mismatches: 17, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
45 39 0.08
46 13 0.03
47 338 0.70
49 93 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14657198 original size:143 final size:141
Alignment explanation
Indices: 14656605--14657158 Score: 925
Period size: 143 Copynumber: 3.9 Consensus size: 141
14656595 CCCTTCGGGA
* * * * * * * *
14656605 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
14656670 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
14656735 TCGGCCATTAGGC
129 TCGGCCATTAGGC
14656748 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TAGGCC-TATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
14656811 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
14656876 GGCCATTAGGC
131 GGCCATTAGGC
*
14656887 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
14656952 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
14657017 TCGGCCATTAGGC
129 TCGGCCATTAGGC
14657030 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
14657095 TTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-TGTTCACATCCATCACAT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACAT
14657159 AGAATCCTAA
Statistics
Matches: 393, Mismatches: 13, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
139 78 0.20
140 7 0.02
141 127 0.32
142 5 0.01
143 176 0.45
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:14661182 original size:40 final size:40
Alignment explanation
Indices: 14660977--14661182 Score: 241
Period size: 40 Copynumber: 5.2 Consensus size: 40
14660967 CCGAATACAC
* * * *
14660977 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * ** *
14661017 AACACCAGCATAAATGCTCTTCGGGATTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * *
14661057 ATAACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
14661097 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
14661137 ATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGACAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
14661177 TTCACT
1 ATCACT
14661183 CTCAATTCTC
Statistics
Matches: 145, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:14662710 original size:47 final size:47
Alignment explanation
Indices: 14662632--14663137 Score: 811
Period size: 47 Copynumber: 10.7 Consensus size: 47
14662622 CCCTTCGGGA
* * * *
14662632 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
14662679 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14662726 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14662775 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14662822 CTTATCACATATATACACTTTCACATTCAT-ACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14662868 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14662917 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14662964 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14663013 CTTATCACATATATACACTTTCACATTCATGACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14663060 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
14663107 CTTATCTCATATATGCA-TGTTCACATCCATC
1 CTTATCACATATATACACT-TTCACATTCATC
14663138 CCATAGAATC
Statistics
Matches: 433, Mismatches: 17, Indels: 18
0.93 0.04 0.04
Matches are distributed among these distances:
46 26 0.06
47 269 0.62
48 22 0.05
49 116 0.27
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14662794 original size:96 final size:94
Alignment explanation
Indices: 14662632--14663137 Score: 811
Period size: 96 Copynumber: 5.3 Consensus size: 94
14662622 CCCTTCGGGA
* * * * * *
14662632 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTT-GGCCCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATACA
14662696 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
14662726 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
14662791 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
14662822 CTTATCACATATATACACTTTCACATTCAT-ACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
14662886 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
14662917 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
14662982 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
14663013 CTTATCACATATATACACTTTCACATTCATGACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
14663078 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
14663107 CTTATCTCATATATGCA-TGTTCACATCCATC
1 CTTATCACATATATACACT-TTCACATTCATC
14663138 CCATAGAATC
Statistics
Matches: 392, Mismatches: 13, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
93 24 0.06
94 94 0.24
95 71 0.18
96 203 0.52
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:14663061 original size:238 final size:239
Alignment explanation
Indices: 14662632--14663120 Score: 860
Period size: 238 Copynumber: 2.1 Consensus size: 239
14662622 CCCTTCGGGA
* * *
14662632 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTTGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTTGGCCCTATCACATATATAC
14662695 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
14662760 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
131 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
14662825 ATCACATATATACACTTTCACATTCAT-ACATCGGCTATTAGGC
196 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14662868 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATA
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTT-GGCCCTATCACATATATA
*
14662932 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATC
65 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
*
14662997 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATGACATCGGCCATTAGGCCT
130 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
14663062 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
195 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14663107 CTTATCTCATATAT
1 CTTATCACATATAT
14663121 GCATGTTCAC
Statistics
Matches: 240, Mismatches: 9, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
236 10 0.04
237 3 0.01
238 199 0.83
239 28 0.12
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (239 bp):
CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTTGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14668811 original size:22 final size:21
Alignment explanation
Indices: 14668776--14668851 Score: 59
Period size: 22 Copynumber: 3.7 Consensus size: 21
14668766 AAAAGATATC
* *
14668776 TACAAATTAAATCTCAAAGAT
1 TACAAATCATATCTCAAAGAT
*
14668797 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCAAAGAT
* *
14668820 TGCATATCATATCT--AAGAT
1 TACAAATCATATCTCAAAGAT
*
14668839 TGC-AATCATATCT
1 TACAAATCATATCT
14668852 AAGATTGTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
18 9 0.19
19 8 0.17
21 4 0.09
22 17 0.36
23 9 0.19
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.34
Consensus pattern (21 bp):
TACAAATCATATCTCAAAGAT
Found at i:14668868 original size:35 final size:37
Alignment explanation
Indices: 14668805--14668902 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
14668795 ATTACAAAAT
14668805 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
14668841 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
14668876 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
14668903 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:14668910 original size:17 final size:19
Alignment explanation
Indices: 14668812--14668902 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
14668802 AATCATATCT
14668812 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14668831 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
14668849 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
14668866 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14668885 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
14668903 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14669054 original size:21 final size:20
Alignment explanation
Indices: 14669017--14669055 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
14669007 GAACTTGGAC
**
14669017 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
14669037 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
14669056 TCTAGGACCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:14683079 original size:48 final size:48
Alignment explanation
Indices: 14683040--14683258 Score: 339
Period size: 48 Copynumber: 4.6 Consensus size: 48
14683030 TGATCCCGTA
* * *
14683040 TAAGACCATGTATGGGACATGGCATCGGCATTGTTATGTGAACCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* *
14683088 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTAAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* *
14683136 TAAGACCATGTCTAGGACATAGCATCGGCATCGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* *
14683184 TAAGACCATGTCTGGGACATGGCATCGGCATCATTATTTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* *
14683232 TAAGACCATGTTTGGGACATGGAATCG
1 TAAGACCATGTCTGGGACATGGCATCG
14683259 ACATGAGGCA
Statistics
Matches: 158, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 158 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
Found at i:14683155 original size:96 final size:95
Alignment explanation
Indices: 14682985--14683258 Score: 337
Period size: 96 Copynumber: 2.9 Consensus size: 95
14682975 ACCATGGCAA
* * * * *
14682985 TATGTGTAACCA-TGTAAGACCATATCT-GGATATGGCATCGGCA-TG---TG-ATCCCGTATAA
1 TATGTG-AACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTAGCCAGTGTAA
*
14683043 GACCATGTATGGGACATGGCATCGGCATTGT
65 GACCATGTATGGGACATGGCATCGGCATCGT
14683074 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTAAGCCAGTGTAA
1 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGT-AGCCAGTGTAA
* * *
14683139 GACCATGTCTAGGACATAGCATCGGCATCGT
65 GACCATGTATGGGACATGGCATCGGCATCGT
* ** *
14683170 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCATTATTTGAGCCAGTGTAA
1 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGT-AGCCAGTGTAA
* *
14683235 GACCATGTTTGGGACATGGAATCG
65 GACCATGTATGGGACATGGCATCG
14683259 ACATGAGGCA
Statistics
Matches: 159, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
88 5 0.03
89 20 0.13
90 15 0.09
91 2 0.01
94 2 0.01
96 115 0.72
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (95 bp):
TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTAGCCAGTGTAAG
ACCATGTATGGGACATGGCATCGGCATCGT
Found at i:14688152 original size:4 final size:4
Alignment explanation
Indices: 14688143--14688177 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
14688133 GAATTATTAT
*
14688143 TTTA TTTA TTTA TTTA TTCA TTTA TTTA TATTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TT
14688178 ATGGTATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:14695241 original size:58 final size:58
Alignment explanation
Indices: 14695151--14695264 Score: 219
Period size: 58 Copynumber: 2.0 Consensus size: 58
14695141 ACCCAAATAT
*
14695151 ATAACCCTAGACCCAATCTGCTAACCCAAAACCTTAAAACCCAATAACCTGAAGCCCG
1 ATAACCCTAGACCCAATCTGCTAACACAAAACCTTAAAACCCAATAACCTGAAGCCCG
14695209 ATAACCCTAGACCCAATCTGCTAACACAAAACCTTAAAACCCAATAACCTGAAGCC
1 ATAACCCTAGACCCAATCTGCTAACACAAAACCTTAAAACCCAATAACCTGAAGCC
14695265 TAAAGGCCAC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.41, C:0.35, G:0.08, T:0.16
Consensus pattern (58 bp):
ATAACCCTAGACCCAATCTGCTAACACAAAACCTTAAAACCCAATAACCTGAAGCCCG
Found at i:14701822 original size:24 final size:24
Alignment explanation
Indices: 14701790--14701836 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
14701780 ACGAGGTAAT
**
14701790 CCTCGGATCTCTATCCAAAATAAA
1 CCTCGGATCTCTATAAAAAATAAA
14701814 CCTCGGATCTCTATAAAAAATAA
1 CCTCGGATCTCTATAAAAAATAA
14701837 TCGATAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.26
Consensus pattern (24 bp):
CCTCGGATCTCTATAAAAAATAAA
Found at i:14703826 original size:49 final size:50
Alignment explanation
Indices: 14703746--14703992 Score: 282
Period size: 49 Copynumber: 5.0 Consensus size: 50
14703736 AGCTATTGCA
* * *
14703746 AGGTCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
14703796 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * *
14703846 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
14703896 AGGTCACGTGTGTAGCACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * *
14703946 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
14703993 CTTCCGCTAC
Statistics
Matches: 162, Mismatches: 33, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
49 78 0.48
50 46 0.28
51 38 0.23
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:14707187 original size:49 final size:50
Alignment explanation
Indices: 14707107--14707353 Score: 291
Period size: 49 Copynumber: 5.0 Consensus size: 50
14707097 AGCTATTATG
* *
14707107 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
14707157 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * *
14707207 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
14707257 AGGTCACGTGTGTAGCACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * *
14707307 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
14707354 CTTCCGCTAC
Statistics
Matches: 163, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 79 0.48
50 46 0.28
51 38 0.23
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:14711864 original size:20 final size:21
Alignment explanation
Indices: 14711839--14711878 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14711829 CTCTTGAAAC
14711839 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
14711859 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
14711879 CCACTATGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.30, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:14713125 original size:49 final size:46
Alignment explanation
Indices: 14713003--14713221 Score: 151
Period size: 47 Copynumber: 4.7 Consensus size: 46
14712993 TGGTATAATA
* * * *
14713003 CCGATGCCATATCCCAGACATAGTCTTACACTGGCTCATCCATCA-A-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACAT--AT-AGAGG
** * * * * * *
14713050 TTGATGCCCTGTTCCAAACATTGTCTTACACTGACTATCAAAATTGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGAC-A-C-ATATAGAGG
* * * *
14713099 CCGATGCCATGTCCCAGACATGGTCTTACACTAACACCTCTATACATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACA-C-ATATAGAGG
* *
14713147 -CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATATAGAGG
* *
14713192 CCAATG-CATGTCCTAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
14713222 TCCTTACAAA
Statistics
Matches: 133, Mismatches: 33, Indels: 15
0.73 0.18 0.08
Matches are distributed among these distances:
44 10 0.08
45 17 0.13
46 5 0.04
47 61 0.46
48 9 0.07
49 30 0.23
50 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (46 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATATAGAGG
Found at i:14713172 original size:96 final size:92
Alignment explanation
Indices: 14713003--14713221 Score: 217
Period size: 96 Copynumber: 2.3 Consensus size: 92
14712993 TGGTATAATA
* ** * * * *
14713003 CCGATGCCATATCCCAGACATAGTCTTACACTGGCTCATCCATCAAGTTGATGCCCTGTTCCAAA
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAACACATCCATCAAGTCGATGCCATGTCCCAAA
* *
14713068 CATTGTCTTACACTGACTATCAAAATTGAGG
65 CATGGTCTTACACTGAC-A-C-AAATCGAGG
* * * *
14713099 CCGATGCCATGTCCCAGACATGGTCTTACACTAACACCTCTATACATG-CGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAACACATCCAT-CAAGTCGATGCCATGTCCCAA
**
14713163 ACATGGTCTTACACTGACACATCTCGAGG
64 ACATGGTCTTACACTGACACAAATCGAGG
* *
14713192 CCAATG-CATGTCCTAGACATGTCTTACACT
1 CCGATGCCATGTCCCAGACATGTCTTACACT
14713222 TCCTTACAAA
Statistics
Matches: 104, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
91 10 0.10
92 13 0.12
93 11 0.11
94 1 0.01
95 1 0.01
96 65 0.62
97 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (92 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTAACACATCCATCAAGTCGATGCCATGTCCCAAAC
ATGGTCTTACACTGACACAAATCGAGG
Found at i:14716103 original size:192 final size:192
Alignment explanation
Indices: 14715761--14716128 Score: 469
Period size: 192 Copynumber: 1.9 Consensus size: 192
14715751 GGGACACCTT
* *
14715761 ATGATAAACCGTAATATATACATATTTTTACCTCATGCTTGGCATATTTATGAATTATTTTTCCT
1 ATGATAAACCGTAATATATACATATTTTTACCTCATGCTTGACATATTTATGAATGATTTTTCCT
**** *
14715826 TGGTTTTAGTGAAATTGATGCTCCTAATCCTTTAATTTCATGTTTTATACTTAGGAGAGCTTAGG
66 TAAAATTAGTGAAATTGATGCTCCTAATCCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGG
* * * * *
14715891 ATAGCAAAAAGAGAGAGAAACGGGCTAAAAATGGACAAATTGGGCCTAAATTAGTATTTCAC
131 AGAGCAAAAAGAGAGAGAAACGGGCAAAAAACGGAAAAAATGGGCCTAAATTAGTATTTCAC
* *
14715953 ATGATAAACCGTAATTTATGCATATTTCTGT-CC-CATGCTTAGACAT-TTTAT-AGATGATTTT
1 ATGATAAACCGTAATATATACATATTT-T-TACCTCATGCTT-GACATATTTATGA-ATGATTTT
* *
14716014 TCCTTAAAATTAGTGAATTTGATGCTCCTAATGCC-TTAATTTCATGTTTTATACTTAGGTGAGC
62 TCCTTAAAATTAGTGAAATTGATGCTCCTAAT-CCTTTAATTTCATGTTTTATACTTAGGAGAGC
** *
14716078 ATAGGAGAGTGAAAGGA-ACGAGAAACGGGCAAAAAACGGAAAAAATGGGCC
126 ATAGGAGAGCAAAAAGAGA-GAGAAACGGGCAAAAAACGGAAAAAATGGGCC
14716129 AACGTACGAA
Statistics
Matches: 151, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
191 2 0.01
192 139 0.92
193 9 0.06
194 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (192 bp):
ATGATAAACCGTAATATATACATATTTTTACCTCATGCTTGACATATTTATGAATGATTTTTCCT
TAAAATTAGTGAAATTGATGCTCCTAATCCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGG
AGAGCAAAAAGAGAGAGAAACGGGCAAAAAACGGAAAAAATGGGCCTAAATTAGTATTTCAC
Found at i:14724527 original size:79 final size:81
Alignment explanation
Indices: 14724403--14724586 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
14724393 GCTACTCGTT
* *
14724403 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
14724466 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
14724482 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
14724545 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
14724562 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14724587 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:14724586 original size:40 final size:40
Alignment explanation
Indices: 14724384--14724586 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
14724374 CGGAATTTAA
** *
14724384 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
14724424 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
14724463 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
14724502 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
14724542 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
14724582 CCGGA
1 CCGGA
14724587 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:14732362 original size:39 final size:40
Alignment explanation
Indices: 14732245--14732429 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
14732235 GCTACTCGTT
14732245 CAAATGCCTTCGGGACATT-GCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TTAGCCCGGATT-TAGTAACTCGCA
* *
14732285 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
14732325 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*** * * * *
14732364 CAAATGCCTTC-GGATCTTAGTTTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
14732405 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14732430 AATCATTCAA
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.02
39 35 0.29
40 71 0.59
41 12 0.10
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:14734616 original size:14 final size:13
Alignment explanation
Indices: 14734599--14734632 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
14734589 CTCCCTCTCT
14734599 TCTTTTTTCCCTTC
1 TCTTTTTT-CCTTC
14734613 TCTTTCTTTCCTTC
1 TCTTT-TTTCCTTC
14734627 TCTTTT
1 TCTTTT
14734633 CTTTCTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 15 0.79
15 3 0.16
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (13 bp):
TCTTTTTTCCTTC
Found at i:14734633 original size:15 final size:15
Alignment explanation
Indices: 14734599--14734662 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
14734589 CTCCCTCTCT
*
14734599 TCTTTT-TTCCCTTC
1 TCTTTTCTTTCCTTC
14734613 TC-TTTCTTTCCTTC
1 TCTTTTCTTTCCTTC
*
14734627 TCTTTTCTTTCTTTC
1 TCTTTTCTTTCCTTC
14734642 T-TTCTTCTTTCCTTC
1 TCTT-TTCTTTCCTTC
*
14734657 ACTTTT
1 TCTTTT
14734663 TCCCCTCTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
13 3 0.07
14 13 0.31
15 24 0.57
16 2 0.05
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (15 bp):
TCTTTTCTTTCCTTC
Found at i:14734637 original size:19 final size:20
Alignment explanation
Indices: 14734613--14734651 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
14734603 TTTTCCCTTC
14734613 TCTTTCTTTCCTTC-TCTTT
1 TCTTTCTTTCCTTCTTCTTT
*
14734632 TCTTTCTTTCTTTCTTCTTT
1 TCTTTCTTTCCTTCTTCTTT
14734652 CCTTCACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (20 bp):
TCTTTCTTTCCTTCTTCTTT
Found at i:14734857 original size:3 final size:3
Alignment explanation
Indices: 14734849--14734888 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
14734839 TTTTACCCTA
* * *
14734849 ATT ATT ATT ATT GTT ATT ATT ATT AGT ATT AGT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
14734889 GAATTATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:14734889 original size:15 final size:15
Alignment explanation
Indices: 14734851--14734894 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14734841 TTACCCTAAT
* * *
14734851 TATTATTATTGTTAT
1 TATTATTAGTATTAG
14734866 TATTATTAGTATTAG
1 TATTATTAGTATTAG
*
14734881 TATTATTAGAATTA
1 TATTATTAGTATTA
14734895 TTTTTATGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (15 bp):
TATTATTAGTATTAG
Found at i:14742547 original size:16 final size:15
Alignment explanation
Indices: 14742526--14742569 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
14742516 TGTACACCAC
*
14742526 TTCTCTTCTTTTCTTT
1 TTCTCTTCTTTT-TCT
14742542 TTCTCTTCTTTTTCT
1 TTCTCTTCTTTTTCT
14742557 TTCTCCTTCTTTT
1 TTCT-CTTCTTTT
14742570 AGTAAGAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 6 0.23
16 20 0.77
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (15 bp):
TTCTCTTCTTTTTCT
Found at i:14744849 original size:24 final size:21
Alignment explanation
Indices: 14744798--14744838 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14744788 TCCCTCTTGG
*
14744798 AAGGTGGATATCGTGATACCT
1 AAGGTGGATATCGCGATACCT
*
14744819 AAGGTGGATTTCGCGATACC
1 AAGGTGGATATCGCGATACC
14744839 ACTATAGGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (21 bp):
AAGGTGGATATCGCGATACCT
Found at i:14748220 original size:22 final size:22
Alignment explanation
Indices: 14748195--14748246 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
14748185 AAAAACCAGG
*
14748195 AAAATA-CGAAGAAAATAATAAA
1 AAAATAGC-AAGAAAACAATAAA
*
14748217 AAAATAGCAAGAAAGCAAT-AA
1 AAAATAGCAAGAAAACAATAAA
14748238 AAAATAGCA
1 AAAATAGCA
14748247 GTTTTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 11 0.41
22 15 0.56
23 1 0.04
ACGTcount: A:0.69, C:0.08, G:0.12, T:0.12
Consensus pattern (22 bp):
AAAATAGCAAGAAAACAATAAA
Found at i:14748966 original size:4 final size:4
Alignment explanation
Indices: 14748957--14749013 Score: 114
Period size: 4 Copynumber: 14.2 Consensus size: 4
14748947 TTTACTTCAG
14748957 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
14749005 GTAT GTAT G
1 GTAT GTAT G
14749014 CTGTGATTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 53 1.00
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:14752933 original size:22 final size:23
Alignment explanation
Indices: 14752895--14752943 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
14752885 ACATTAAATA
*
14752895 AAAAGAAAATAATAAAG-AAAAG
1 AAAAGAAAATAATAAAGCAAAAC
14752917 AAAAGAAAATACA-AAAGCAAAAC
1 AAAAGAAAATA-ATAAAGCAAAAC
14752940 AAAA
1 AAAA
14752944 CTAAAGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.78, C:0.06, G:0.10, T:0.06
Consensus pattern (23 bp):
AAAAGAAAATAATAAAGCAAAAC
Found at i:14753388 original size:10 final size:10
Alignment explanation
Indices: 14753373--14753429 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
14753363 GTTAACATCC
14753373 ATTAATTTTA
1 ATTAATTTTA
*
14753383 AGTAATTATT-
1 ATTAATT-TTA
*
14753393 ATTAAGTTTA
1 ATTAATTTTA
*
14753403 ATTAATTTTG
1 ATTAATTTTA
14753413 ATTAA-TTTA
1 ATTAATTTTA
14753422 AGTTAATT
1 A-TTAATT
14753430 AGGTGATTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
9 6 0.16
10 28 0.76
11 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (10 bp):
ATTAATTTTA
Found at i:14753402 original size:20 final size:20
Alignment explanation
Indices: 14753373--14753430 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
14753363 GTTAACATCC
14753373 ATTAATTTTAAGTAATTATT-
1 ATTAA-TTTAAGTAATTATTG
*
14753393 ATTAAGTTTAATTAATT-TTG
1 ATTAA-TTTAAGTAATTATTG
14753413 ATTAATTTAAGTTAATTA
1 ATTAATTTAAG-TAATTA
14753431 GGTGATTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 7 0.22
20 25 0.78
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (20 bp):
ATTAATTTAAGTAATTATTG
Found at i:14753901 original size:20 final size:21
Alignment explanation
Indices: 14753876--14753921 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
14753866 TGAAATTTGT
14753876 TTTAAAACCAAAGCTCAAAA-
1 TTTAAAACCAAAGCTCAAAAC
*
14753896 TTTAAAACCAGAGCTCAAAAC
1 TTTAAAACCAAAGCTCAAAAC
14753917 TTTAA
1 TTTAA
14753922 GGGCATCGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.50, C:0.20, G:0.07, T:0.24
Consensus pattern (21 bp):
TTTAAAACCAAAGCTCAAAAC
Found at i:14768242 original size:20 final size:17
Alignment explanation
Indices: 14768202--14768250 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 17
14768192 TCTTTGAGCA
14768202 TTAAATA-TAAAATAAT
1 TTAAATATTAAAATAAT
14768218 TTAAATATTAAAATCAGATT
1 TTAAATATTAAAAT-A-A-T
14768238 TTAAATATTAAAA
1 TTAAATATTAAAA
14768251 ATTTTAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.24
17 6 0.21
18 1 0.03
19 1 0.03
20 14 0.48
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (17 bp):
TTAAATATTAAAATAAT
Found at i:14768256 original size:16 final size:17
Alignment explanation
Indices: 14768202--14768258 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 17
14768192 TCTTTGAGCA
* *
14768202 TTAAATA-TAAAATAAT
1 TTAAATATTAAAAGATT
14768218 TTAAATATTAAAATCAGATT
1 TTAAATATT-AAA--AGATT
14768238 TTAAATATTAAAA-ATT
1 TTAAATATTAAAAGATT
14768254 TTAAA
1 TTAAA
14768259 AATCTATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
16 15 0.43
17 2 0.06
18 3 0.09
19 3 0.09
20 12 0.34
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
TTAAATATTAAAAGATT
Found at i:14768563 original size:17 final size:17
Alignment explanation
Indices: 14768517--14768581 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 17
14768507 ACATAAATTC
* *
14768517 AATTAATAATTGAAAACA
1 AATTTATAATTTAAAA-A
14768535 AATTTACT--TTTAAAAA
1 AATTTA-TAATTTAAAAA
*
14768551 AATTTATAATTTATAAA
1 AATTTATAATTTAAAAA
*
14768568 AA-TTCTAATTTAAA
1 AATTTATAATTTAAA
14768582 TTATTTTCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
15 1 0.03
16 17 0.44
17 15 0.38
18 5 0.13
19 1 0.03
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.40
Consensus pattern (17 bp):
AATTTATAATTTAAAAA
Found at i:14773035 original size:45 final size:45
Alignment explanation
Indices: 14772931--14773044 Score: 142
Period size: 45 Copynumber: 2.5 Consensus size: 45
14772921 GGGCTGGTGG
* * *
14772931 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCAT
1 CTTCAATCTGCTCCACTGCAACTTAAGGAAGATAAGATCTGACAA
* *
14772976 CTTCGATCTACTCCACTGCAAACTTCAAGG-AGATAAGATCT-ACAA
1 CTTCAATCTGCTCCACTGC-AACTT-AAGGAAGATAAGATCTGACAA
*
14773021 CTTCAATCTGCTCCACTGCTACTT
1 CTTCAATCTGCTCCACTGCAACTT
14773045 CAGGGAAATG
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
44 4 0.07
45 36 0.61
46 16 0.27
47 3 0.05
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTAAGGAAGATAAGATCTGACAA
Found at i:14773465 original size:46 final size:46
Alignment explanation
Indices: 14773409--14773512 Score: 163
Period size: 46 Copynumber: 2.3 Consensus size: 46
14773399 ATTTTTGGTT
* *
14773409 TCTTCCATCCATCCCACTGTAACTCAAGGGTATAGGATTTGTATCA
1 TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
* * *
14773455 TCTTCAATCCATCCCACTGCAACTTAGGGGTATAGGATTTGTATCT
1 TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
14773501 TCTTCAATCCAT
1 TCTTCAATCCAT
14773513 TCCGCTACAG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 53 1.00
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (46 bp):
TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
Found at i:14773538 original size:46 final size:46
Alignment explanation
Indices: 14773409--14773542 Score: 135
Period size: 46 Copynumber: 2.9 Consensus size: 46
14773399 ATTTTTGGTT
* ** *
14773409 TCTTCCATCCATCCCACTGTAACTCAAGG-GTATAGGATTTGTATCA
1 TCTTCAATCCATCCCACTACAACTC-AGGAGTACAGGATTTGTATCA
* * * * *
14773455 TCTTCAATCCATCCCACTGCAACTTAGGGGTATAGGATTTGTATCT
1 TCTTCAATCCATCCCACTACAACTCAGGAGTACAGGATTTGTATCA
* * * *
14773501 TCTTCAATCCATTCCGCTACAGCTCAGTAGTACAGGATTTGT
1 TCTTCAATCCATCCCACTACAACTCAGGAGTACAGGATTTGT
14773543 GGCTTTTTCA
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
45 3 0.04
46 72 0.96
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (46 bp):
TCTTCAATCCATCCCACTACAACTCAGGAGTACAGGATTTGTATCA
Found at i:14778065 original size:5 final size:5
Alignment explanation
Indices: 14778057--14778081 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14778047 ATGCAATCAT
14778057 AAACA AAACA AAACA AAACA AAACA
1 AAACA AAACA AAACA AAACA AAACA
14778082 CGTCAGTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:14781360 original size:51 final size:52
Alignment explanation
Indices: 14781287--14781391 Score: 126
Period size: 51 Copynumber: 2.0 Consensus size: 52
14781277 CCATTGAATT
* * *
14781287 TATTTAATTTAATTTTAAAAATTTTACT-TTAAATGAATTAACTT-ATATAAA
1 TATTTAATCTAATTTTAAAAATTTTA-TGGTAAATAAATTAACTTAATATAAA
* *
14781338 TATTT-ATCTAATATTTGAAAATTTTATGGTAAATAAATTAACTTAATTTAAA
1 TATTTAATCTAAT-TTTAAAAATTTTATGGTAAATAAATTAACTTAATATAAA
14781390 TA
1 TA
14781392 AACTAACTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
50 7 0.15
51 31 0.67
52 8 0.17
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (52 bp):
TATTTAATCTAATTTTAAAAATTTTATGGTAAATAAATTAACTTAATATAAA
Found at i:14781676 original size:33 final size:33
Alignment explanation
Indices: 14781636--14781713 Score: 129
Period size: 33 Copynumber: 2.3 Consensus size: 33
14781626 AATTTACATT
14781636 TGAAAATTAAAAATTTATTTAATTTAAACTGAA
1 TGAAAATTAAAAATTTATTTAATTTAAACTGAA
*
14781669 TGAAAATTAAAAATTTATTTAATTTAAATTGAA
1 TGAAAATTAAAAATTTATTTAATTTAAACTGAA
14781702 TGGATAAATTAA
1 T-GA-AAATTAA
14781714 CTTTTTCAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
33 33 0.79
34 2 0.05
35 7 0.17
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.40
Consensus pattern (33 bp):
TGAAAATTAAAAATTTATTTAATTTAAACTGAA
Found at i:14787468 original size:29 final size:29
Alignment explanation
Indices: 14787409--14787470 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
14787399 CGATCTTGGC
* * *
14787409 ACTTAAACTTTTTTTTTGTCACAAATGGT
1 ACTTAAACTCTTTTTTTCTCACAAATAGT
*
14787438 ACTTAAACTACTTTTTTTCTCA-AATTAGT
1 ACTTAAACT-CTTTTTTTCTCACAAATAGT
14787467 ACTT
1 ACTT
14787471 CCGTTAGTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.29, C:0.16, G:0.06, T:0.48
Consensus pattern (29 bp):
ACTTAAACTCTTTTTTTCTCACAAATAGT
Found at i:14795195 original size:23 final size:23
Alignment explanation
Indices: 14795153--14795196 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
14795143 TCAATATTAT
*
14795153 TTTATTAATATTTTGCTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
14795176 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
14795197 AAAATGGTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:14799628 original size:21 final size:22
Alignment explanation
Indices: 14799577--14799621 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
14799567 TCAAATGGAT
*
14799577 ACCAAAACTAGGTTGAGATGTACC
1 ACCAAAACTAAGTTGAGATGT--C
14799601 ACCAAAACTAAGTTGAGATGT
1 ACCAAAACTAAGTTGAGATGT
14799622 GCCAAAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (22 bp):
ACCAAAACTAAGTTGAGATGTC
Found at i:14799838 original size:37 final size:37
Alignment explanation
Indices: 14799788--14799863 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
14799778 AAACTAAGTT
14799788 GATGGATACTCAATATACACATGGGTGATGTTTGTTA
1 GATGGATACTCAATATACACATGGGTGATGTTTGTTA
14799825 GATGGATACTCAATATACACATGGGTGATGTTTGTTA
1 GATGGATACTCAATATACACATGGGTGATGTTTGTTA
14799862 GA
1 GA
14799864 GACAAGGTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (37 bp):
GATGGATACTCAATATACACATGGGTGATGTTTGTTA
Found at i:14801709 original size:51 final size:51
Alignment explanation
Indices: 14801649--14801753 Score: 201
Period size: 51 Copynumber: 2.1 Consensus size: 51
14801639 TTTTCAGTGA
*
14801649 GTTACTTTGTATTTACTTAGATTTTATGTTAGCAAGCTAAATTTGATATAT
1 GTTACTTTGTATTTACTTAGATTCTATGTTAGCAAGCTAAATTTGATATAT
14801700 GTTACTTTGTATTTACTTAGATTCTATGTTAGCAAGCTAAATTTGATATAT
1 GTTACTTTGTATTTACTTAGATTCTATGTTAGCAAGCTAAATTTGATATAT
14801751 GTT
1 GTT
14801754 TTAAAGCTTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.49
Consensus pattern (51 bp):
GTTACTTTGTATTTACTTAGATTCTATGTTAGCAAGCTAAATTTGATATAT
Found at i:14803174 original size:2 final size:2
Alignment explanation
Indices: 14803167--14803211 Score: 67
Period size: 2 Copynumber: 23.5 Consensus size: 2
14803157 CTTAAAAATT
*
14803167 TA TA TA TA TA TA TA -A AA TA TA TA -A TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14803207 TA TA T
1 TA TA T
14803212 TGTGAAAGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
1 2 0.05
2 38 0.95
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:14804502 original size:21 final size:21
Alignment explanation
Indices: 14804468--14804508 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14804458 TGTTTATGAT
* *
14804468 TTGATTCTACTGTTTATAAAC
1 TTGATCCTACTGTTCATAAAC
*
14804489 TTGATCCTATTGTTCATAAA
1 TTGATCCTACTGTTCATAAA
14804509 ACTAACATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.46
Consensus pattern (21 bp):
TTGATCCTACTGTTCATAAAC
Found at i:14804994 original size:9 final size:8
Alignment explanation
Indices: 14804978--14805002 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14804968 CTGCTTAATA
14804978 TCTTTTTT
1 TCTTTTTT
14804986 TCTTTTTT
1 TCTTTTTT
14804994 TCTTTTTT
1 TCTTTTTT
14805002 T
1 T
14805003 ATTTCAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TCTTTTTT
Found at i:14805328 original size:6 final size:6
Alignment explanation
Indices: 14805319--14805358 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
14805309 AAACTCAGAG
* *
14805319 TCCGGT TCCGGT TCCGGC TCCGGC TCCGGC TCCGGC TCCG
1 TCCGGC TCCGGC TCCGGC TCCGGC TCCGGC TCCGGC TCCG
14805359 TTTCTTCACT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.45, G:0.33, T:0.23
Consensus pattern (6 bp):
TCCGGC
Found at i:14808071 original size:3 final size:3
Alignment explanation
Indices: 14808055--14808108 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
14808045 TTCATTTCGG
* *
14808055 GAA GAA -AA -AA GAA GAA GAA GGA -AA GAA GGA GAA G-A GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
14808099 GAA GGA GAA G
1 GAA GAA GAA G
14808109 GAGGTGGCAC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
2 7 0.17
3 35 0.83
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:14808081 original size:14 final size:14
Alignment explanation
Indices: 14808062--14808104 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
14808052 CGGGAAGAAA
14808062 AAAGAAGAAGAAGG
1 AAAGAAGAAGAAGG
*
14808076 AAAGAAGGAGAA-G
1 AAAGAAGAAGAAGG
14808089 AGAAGAAGAAGAAGG
1 A-AAGAAGAAGAAGG
14808104 A
1 A
14808105 GAAGGAGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 2 0.08
14 21 0.84
15 2 0.08
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (14 bp):
AAAGAAGAAGAAGG
Found at i:14808087 original size:20 final size:20
Alignment explanation
Indices: 14808067--14808108 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
14808057 AGAAAAAAGA
14808067 AGAAGAAGGAAAGAAGGAGAAG
1 AGAAGAA-G-AAGAAGGAGAAG
14808089 AGAAGAAGAAGAAGGAGAAG
1 AGAAGAAGAAGAAGGAGAAG
14808109 GAGGTGGCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 12 0.60
21 1 0.05
22 7 0.35
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (20 bp):
AGAAGAAGAAGAAGGAGAAG
Found at i:14808147 original size:5 final size:6
Alignment explanation
Indices: 14808132--14808156 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14808122 TGAAGGAAGA
14808132 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
14808157 GAAGGAGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:14808633 original size:16 final size:15
Alignment explanation
Indices: 14808612--14808689 Score: 57
Period size: 16 Copynumber: 4.9 Consensus size: 15
14808602 ACCTTTTATA
*
14808612 AAAATAGTATAAAAAT
1 AAAATACTA-AAAAAT
14808628 AAAATACTAAAAAAT
1 AAAATACTAAAAAAT
*** *
14808643 ATCTTAATGAAAAAAT
1 AAAATACT-AAAAAAT
*
14808659 AAAATACAAAAAGAAAT
1 AAAATAC-TAAA-AAAT
*
14808676 AAAATACGAAAAAA
1 AAAATACTAAAAAA
14808690 ACTTTTTTGG
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
15 13 0.27
16 24 0.50
17 11 0.23
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.19
Consensus pattern (15 bp):
AAAATACTAAAAAAT
Found at i:14808675 original size:17 final size:18
Alignment explanation
Indices: 14808655--14808688 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14808645 CTTAATGAAA
14808655 AAATAAAATAC-AAAAAG
1 AAATAAAATACGAAAAAG
14808672 AAATAAAATACGAAAAA
1 AAATAAAATACGAAAAA
14808689 AACTTTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (18 bp):
AAATAAAATACGAAAAAG
Found at i:14808907 original size:150 final size:147
Alignment explanation
Indices: 14808724--14809259 Score: 767
Period size: 150 Copynumber: 3.6 Consensus size: 147
14808714 GCGGGTTTTT
* *
14808724 TACTAAAATAATAT---AAA-AAAATACAAAAATAGTATATTTTAAAAAATAAAATCTGAAAATT
1 TACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAA-T
**
14808785 TTAAAAATACAAACAAAAGGCCAAAATTAGGGTTATTTACTAAATTAATAAAATAATACTAAAAT
65 AAAAAAATACAAACAAAAGGCCAAAATTAGGGTTATTTACTAAATTAATAAAA-AA-ACTAAAAT
*
14808850 AATACATTTAAAACATTATG
128 AATACATTTGAAACATTATG
* *
14808870 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
1 TACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAA-T
* *
14808935 TAAAAAATACAAACAAAAGGCCAAAATCAGGGTTATTTACTAAATTAATAAAAAAACTAAAATAA
65 AAAAAAATACAAACAAAAGGCCAAAATTAGGGTTATTTACTAAATTAATAAAAAAACTAAAATAA
*
14809000 TACATTTGAAACATAATG
130 TACATTTGAAACATTATG
* * *
14809018 TACTAAAATAATATAAAAAAATAAAATACGAAAATATTATATATTAAAAAATAAAATCTGAAAAT
1 TACTAAAATAATAT-AAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAAT
* * * *
14809083 AAAAAAATACCAAC-GAAGTGCCAAAATTAGGGTTATTTATTAAATTAATATAAAAACACTTAAA
65 AAAAAAATACAAACAAAAG-GCCAAAATTAGGGTTATTTACTAAATTAATA-AAAAA-ACTAAAA
*
14809147 TAATACATTTGAAACATTATT
127 TAATACATTTGAAACATTATG
*
14809168 TACTAAAATAATATAAGAAAATAAAATACGAAAATAATATATTTTAAAAAATAAAATCCGAAAAT
1 TACTAAAATAATATAA-AAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAAT
* *
14809233 AAAAAAATACCAACAAAGGGCCAAAAT
65 AAAAAAATACAAACAAAAGGCCAAAAT
14809260 CACCGAACAA
Statistics
Matches: 354, Mismatches: 26, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
146 14 0.04
147 3 0.01
148 82 0.23
149 56 0.16
150 197 0.56
151 2 0.01
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (147 bp):
TACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
AAAAAATACAAACAAAAGGCCAAAATTAGGGTTATTTACTAAATTAATAAAAAAACTAAAATAAT
ACATTTGAAACATTATG
Found at i:14808951 original size:21 final size:21
Alignment explanation
Indices: 14808911--14808952 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
14808901 AATAGTATAT
14808911 TTTAAAAAATAAAATCCAAAAA
1 TTTAAAAAATAAAA-CCAAAAA
14808933 TTTAAAAAATACAAA-CAAAA
1 TTTAAAAAATA-AAACCAAAA
14808953 GGCCAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 11 0.58
23 3 0.16
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (21 bp):
TTTAAAAAATAAAACCAAAAA
Found at i:14809190 original size:13 final size:13
Alignment explanation
Indices: 14809172--14809208 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
14809162 ATTATTTACT
14809172 AAAATAATATAAG
1 AAAATAATATAAG
* *
14809185 AAAATAAAATACG
1 AAAATAATATAAG
14809198 AAAATAATATA
1 AAAATAATATA
14809209 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.22
Consensus pattern (13 bp):
AAAATAATATAAG
Found at i:14811587 original size:50 final size:50
Alignment explanation
Indices: 14811518--14811618 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
14811508 CACCACAGCA
*
14811518 TGACACTCCTCCCGGCTCAAGTTCATTGATGCAATTCGAGCCATATGACT
1 TGACACTCCTCCCGGCTCAAGTTCATCGATGCAATTCGAGCCATATGACT
* *
14811568 TGACACTCCTCCCGGCTCAAGTTTATCGATGCCATTCGAGCCATATGACT
1 TGACACTCCTCCCGGCTCAAGTTCATCGATGCAATTCGAGCCATATGACT
14811618 T
1 T
14811619 CTCTTCCATT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.29
Consensus pattern (50 bp):
TGACACTCCTCCCGGCTCAAGTTCATCGATGCAATTCGAGCCATATGACT
Found at i:14811917 original size:26 final size:26
Alignment explanation
Indices: 14811888--14811970 Score: 80
Period size: 26 Copynumber: 3.0 Consensus size: 26
14811878 ATTAAAACAC
14811888 TAAATACATTACAATATTAATCTAAT
1 TAAATACATTACAATATTAATCTAAT
*
14811914 TAAATACATTA-ATTTAATTGGAA-CATTAAT
1 TAAATACATTACA-AT-ATT--AATC--TAAT
*
14811944 TAAATACATTACAACATTAATCTAAT
1 TAAATACATTACAATATTAATCTAAT
14811970 T
1 T
14811971 GGAACAAACT
Statistics
Matches: 46, Mismatches: 3, Indels: 16
0.71 0.05 0.25
Matches are distributed among these distances:
25 1 0.02
26 17 0.37
27 5 0.11
28 2 0.04
29 5 0.11
30 15 0.33
31 1 0.02
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (26 bp):
TAAATACATTACAATATTAATCTAAT
Found at i:14811941 original size:17 final size:17
Alignment explanation
Indices: 14811919--14811976 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
14811909 CTAATTAAAT
14811919 ACATTAATTTAATTGGA
1 ACATTAATTTAATTGGA
**
14811936 ACATTAATTAAATACATTACA
1 ACATTAATT---TA-ATTGGA
*
14811957 ACATTAATCTAATTGGA
1 ACATTAATTTAATTGGA
14811974 ACA
1 ACA
14811977 AACTTTGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
17 16 0.50
18 2 0.06
20 2 0.06
21 12 0.38
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.34
Consensus pattern (17 bp):
ACATTAATTTAATTGGA
Found at i:14815312 original size:39 final size:39
Alignment explanation
Indices: 14815212--14815342 Score: 113
Period size: 39 Copynumber: 3.3 Consensus size: 39
14815202 TAAATCAACG
* *
14815212 ATAATAATAACTAACAATAATTAAGT-TTTTTTTACTAACA
1 ATAATAATAACTAAAAATAA-TAA-TAGTTTTTTACTAACA
* * ***
14815252 ATTATAACCAAC-AATCCTAATAATAGTTTTTTACTAACA
1 ATAATAA-TAACTAAAAATAATAATAGTTTTTTACTAACA
* *
14815291 ATGATAATAACTAAAAATAATAATAAGGGTTTTGTACTAACA
1 ATAATAATAACTAAAAATAATAAT-A--GTTTTTTACTAACA
14815333 ATAATAATAA
1 ATAATAATAA
14815343 GGTTTTTTAC
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
38 4 0.06
39 31 0.43
40 12 0.17
41 3 0.04
42 22 0.31
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (39 bp):
ATAATAATAACTAAAAATAATAATAGTTTTTTACTAACA
Found at i:14815315 original size:42 final size:40
Alignment explanation
Indices: 14815215--14815342 Score: 120
Period size: 42 Copynumber: 3.2 Consensus size: 40
14815205 ATCAACGATA
*
14815215 ATAATAACTAACAATAAT--TAAGTTTTTTTTACTAACAAT
1 ATAATAACTAACAATAATAATAA-TGTTTTTTACTAACAAT
* **
14815254 -T-ATAACCAACAATCCTAATAATAGTTTTTTACTAACAAT
1 ATAATAACTAACAATAATAATAAT-GTTTTTTACTAACAAT
* * *
14815293 GATAATAACTAAAAATAATAATAAGGGTTTTGTACTAACAAT
1 -ATAATAACTAACAATAATAATAA-TGTTTTTTACTAACAAT
14815335 AATAATAA
1 -ATAATAA
14815343 GGTTTTTTAC
Statistics
Matches: 71, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
37 12 0.17
38 2 0.03
39 18 0.25
41 1 0.01
42 38 0.54
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.35
Consensus pattern (40 bp):
ATAATAACTAACAATAATAATAATGTTTTTTACTAACAAT
Found at i:14815353 original size:25 final size:26
Alignment explanation
Indices: 14815300--14815367 Score: 111
Period size: 25 Copynumber: 2.7 Consensus size: 26
14815290 AATGATAATA
*
14815300 ACTAAAAATAATAATAAGGGTTTTGT
1 ACTAACAATAATAATAAGGGTTTTGT
*
14815326 ACTAACAATAATAATAA-GGTTTTTT
1 ACTAACAATAATAATAAGGGTTTTGT
14815351 ACTAACAATAATAATAA
1 ACTAACAATAATAATAA
14815368 CTAACAACAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
25 24 0.60
26 16 0.40
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (26 bp):
ACTAACAATAATAATAAGGGTTTTGT
Found at i:14815390 original size:23 final size:23
Alignment explanation
Indices: 14815360--14815407 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
14815350 TACTAACAAT
14815360 AATAATAACTAACAACAAAAA-AC
1 AATAATAA-TAACAACAAAAACAC
*
14815383 AATAATAATAACAGCAAAAACAC
1 AATAATAATAACAACAAAAACAC
14815406 AA
1 AA
14815408 GAACAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.69, C:0.17, G:0.02, T:0.12
Consensus pattern (23 bp):
AATAATAATAACAACAAAAACAC
Found at i:14815415 original size:23 final size:22
Alignment explanation
Indices: 14815369--14815415 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14815359 TAATAATAAC
* *
14815369 TAACAACAAAAAACAATAATAA
1 TAACAACAAAAAACAAGAACAA
*
14815391 TAACAGCAAAAACACAAGAACAA
1 TAACAACAAAAA-ACAAGAACAA
14815414 TA
1 TA
14815416 TAAAAAACCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.68, C:0.17, G:0.04, T:0.11
Consensus pattern (22 bp):
TAACAACAAAAAACAAGAACAA
Found at i:14815776 original size:18 final size:17
Alignment explanation
Indices: 14815753--14815786 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14815743 GGTACATAAT
14815753 TTTTTTGTATTATTTTAG
1 TTTTTTGTATT-TTTTAG
*
14815771 TTTTTTTTATTTTTTA
1 TTTTTTGTATTTTTTA
14815787 TCTTATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (17 bp):
TTTTTTGTATTTTTTAG
Found at i:14826581 original size:22 final size:21
Alignment explanation
Indices: 14826556--14826597 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
14826546 AATATAATGG
*
14826556 CAAAATGACAGTAAAACAATAT
1 CAAAATGACAAT-AAACAATAT
*
14826578 CAAAATGGCAATAAACAATA
1 CAAAATGACAATAAACAATA
14826598 GTGAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.60, C:0.14, G:0.10, T:0.17
Consensus pattern (21 bp):
CAAAATGACAATAAACAATAT
Found at i:14834582 original size:21 final size:21
Alignment explanation
Indices: 14834558--14834602 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14834548 ATACTATATA
*
14834558 TATACATATTATATATATTCT
1 TATACATATTATATATATTAT
** *
14834579 TATAGTTGTTATATATATTAT
1 TATACATATTATATATATTAT
14834600 TAT
1 TAT
14834603 TGTTGTTCCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (21 bp):
TATACATATTATATATATTAT
Found at i:14834607 original size:21 final size:21
Alignment explanation
Indices: 14834566--14834609 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
14834556 TATATACATA
*
14834566 TTATATATATTCTTATAGTTG
1 TTATATATATTATTATAGTTG
*
14834587 TTATATATATTATTATTGTTG
1 TTATATATATTATTATAGTTG
14834608 TT
1 TT
14834610 CCTAATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.02, G:0.09, T:0.61
Consensus pattern (21 bp):
TTATATATATTATTATAGTTG
Found at i:14839466 original size:18 final size:19
Alignment explanation
Indices: 14839429--14839471 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
14839419 TATATTATTT
*
14839429 TTAAAAAATATATAATACA
1 TTAAAAAATATATAAAACA
14839448 -TAAAAAATACTA-AAAACA
1 TTAAAAAATA-TATAAAACA
14839466 TTAAAA
1 TTAAAA
14839472 TAAATGTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (19 bp):
TTAAAAAATATATAAAACA
Found at i:14839710 original size:32 final size:34
Alignment explanation
Indices: 14839645--14839715 Score: 92
Period size: 32 Copynumber: 2.1 Consensus size: 34
14839635 GAAATGATAG
* *
14839645 CAAAATAGTGAAAAAAAAATAAAGAAAGTAGCAA
1 CAAAATAGTGAAAAAAAAAGAAAGAAAGAAGCAA
*
14839679 CAAAATAGT-AAAAAAAAAGCAA-AAAGAAGCAA
1 CAAAATAGTGAAAAAAAAAGAAAGAAAGAAGCAA
*
14839711 GAAAA
1 CAAAA
14839716 CAATAGTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 13 0.39
33 11 0.33
34 9 0.27
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.08
Consensus pattern (34 bp):
CAAAATAGTGAAAAAAAAAGAAAGAAAGAAGCAA
Found at i:14840161 original size:29 final size:30
Alignment explanation
Indices: 14840126--14840182 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
14840116 TTGTCTAATG
* *
14840126 TGCAATTTTATATAT-AAATTTTGATTTTA
1 TGCAATTTTATACATGAAAATTTGATTTTA
14840155 TGCAATTTTATACATGAAAATTTGATTT
1 TGCAATTTTATACATGAAAATTTGATTT
14840183 GATCAAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.35, C:0.05, G:0.09, T:0.51
Consensus pattern (30 bp):
TGCAATTTTATACATGAAAATTTGATTTTA
Found at i:14840640 original size:9 final size:9
Alignment explanation
Indices: 14840626--14840703 Score: 74
Period size: 9 Copynumber: 9.1 Consensus size: 9
14840616 CTAGCAACTC
14840626 ACATAATTT
1 ACATAATTT
14840635 ACATAATTT
1 ACATAATTT
14840644 ACATAA--T
1 ACATAATTT
*
14840651 ACATAACTT
1 ACATAATTT
14840660 ACATAATTT
1 ACATAATTT
* * *
14840669 AAAAAACTT
1 ACATAATTT
14840678 ACATAA--T
1 ACATAATTT
* *
14840685 ACATAACTA
1 ACATAATTT
14840694 ACATAATTT
1 ACATAATTT
14840703 A
1 A
14840704 AAGATCAAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
7 14 0.25
9 42 0.75
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (9 bp):
ACATAATTT
Found at i:14840655 original size:16 final size:16
Alignment explanation
Indices: 14840634--14840700 Score: 80
Period size: 16 Copynumber: 4.1 Consensus size: 16
14840624 TCACATAATT
*
14840634 TACATAATTTACATAA
1 TACATAACTTACATAA
14840650 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
14840666 TTTAAAAAACTTACATAA
1 --TACATAACTTACATAA
*
14840684 TACATAACTAACATAA
1 TACATAACTTACATAA
14840700 T
1 T
14840701 TTAAAGATCA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
16 29 0.67
18 14 0.33
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:14840669 original size:34 final size:34
Alignment explanation
Indices: 14840621--14840705 Score: 125
Period size: 34 Copynumber: 2.5 Consensus size: 34
14840611 GTTTACTAGC
* * * *
14840621 AACTCACATAATTTACATAATTTACATAATACAT
1 AACTAACATAATTTAAAAAACTTACATAATACAT
*
14840655 AACTTACATAATTTAAAAAACTTACATAATACAT
1 AACTAACATAATTTAAAAAACTTACATAATACAT
14840689 AACTAACATAATTTAAA
1 AACTAACATAATTTAAA
14840706 GATCAAATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 46 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (34 bp):
AACTAACATAATTTAAAAAACTTACATAATACAT
Found at i:14840687 original size:25 final size:24
Alignment explanation
Indices: 14840634--14840690 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
14840624 TCACATAATT
* *
14840634 TACATAATTTACATAATACATAAC
1 TACATAATTTAAAAAATACATAAC
14840658 TTACATAATTTAAAAAACTTACATAA-
1 -TACATAATTTAAAAAA--TACATAAC
14840684 TACATAA
1 TACATAA
14840691 CTAACATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 21 0.75
27 7 0.25
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (24 bp):
TACATAATTTAAAAAATACATAAC
Found at i:14840730 original size:31 final size:31
Alignment explanation
Indices: 14840686--14840795 Score: 197
Period size: 31 Copynumber: 3.6 Consensus size: 31
14840676 TTACATAATA
14840686 CATAAC-TAACATAATTTAAAGATCAAATTT
1 CATAACTTAACATAATTTAAAGATCAAATTT
*
14840716 CATAACTTAACATAATTTAAAGATGAAATTT
1 CATAACTTAACATAATTTAAAGATCAAATTT
14840747 CATAACTTAACATAATTTAAAGATCAAATTT
1 CATAACTTAACATAATTTAAAGATCAAATTT
14840778 CATAACTT-ACATAATTTA
1 CATAACTTAACATAATTTA
14840796 CGTAACTTAC
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
30 16 0.21
31 61 0.79
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (31 bp):
CATAACTTAACATAATTTAAAGATCAAATTT
Found at i:14847314 original size:28 final size:27
Alignment explanation
Indices: 14847251--14847315 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
14847241 CTATTCAGAA
* *
14847251 ATCAGTATTAACTGGGCCTTAGCCCAT
1 ATCAGTATTAACTGGGCCTAACCCCAT
* *
14847278 ATCAATATTAATCTGGGCCATAACCCCTT
1 ATCAGTATTAA-CTGGGCC-TAACCCCAT
14847307 A-CAGTATTA
1 ATCAGTATTA
14847316 GAGTATATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 10 0.32
28 14 0.45
29 7 0.23
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (27 bp):
ATCAGTATTAACTGGGCCTAACCCCAT
Found at i:14847767 original size:26 final size:27
Alignment explanation
Indices: 14847738--14847801 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
14847728 CAAAATTAAC
*
14847738 CCTAGGGGTATAACGGTCATTTT-ACA
1 CCTAGGGGTATAACGGTAATTTTCACA
* * *
14847764 CCTAGGAGTAAAATGGTAATTTTCACA
1 CCTAGGGGTATAACGGTAATTTTCACA
*
14847791 CTTAGGGGTAT
1 CCTAGGGGTAT
14847802 TTTAGTAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (27 bp):
CCTAGGGGTATAACGGTAATTTTCACA
Found at i:14849547 original size:274 final size:276
Alignment explanation
Indices: 14849052--14849607 Score: 1035
Period size: 274 Copynumber: 2.0 Consensus size: 276
14849042 CGAACTGCAG
14849052 CTCAAACCCTAGACCTCCGTCCACCTTACGCCCACGCCCATGCTACTGATCACTGCACCATGCTT
1 CTCAAACCCTAGACCTCCGTCCACCTTACGCCCA---CCA-GCTACTGATCACTGCACCATGCTT
14849117 CCTTCCTTACTAATATATGGTCACAATTAATTATAAACCTTACCTGCTTCAGTTCTGGCCCACTT
62 CCTTCCTTACTAATATATGGTCACAATTAATTATAAACCTTACCTGCTTCAGTTCTGGCCCACTT
* *
14849182 TAAAAATTAAACAGAATTCGCCCGCGTACGAACTCAAACCTGTGCCCTCTCCATATGCCTAGCAC
127 TAAAAATTAAACAGAATTCGCCCGCGTACGAACTCAAACCTGCGCCCTCTCCATATGCCCAGCAC
14849247 GCTGCTGCCACTGAGCCACAGACGCTTCTTGTGACATAGCTCGGTCGCAATTATTCTTAAACCTT
192 GCTGCTGCCACTGAGCCACAGACGCTTCTTGTGACATAGCTCGGTCGCAATTATTCTTAAACCTT
14849312 ACTTTAGTGCGATCTGGCTT
257 ACTTTAGTGCGATCTGGCTT
14849332 CTCAAACCCTAGACCTCCGTCCACCTTACGCCCA-C-GCTACTGATCACTGCACCATGCTTCCTT
1 CTCAAACCCTAGACCTCCGTCCACCTTACGCCCACCAGCTACTGATCACTGCACCATGCTTCCTT
14849395 CCTTACTAATATATGGTCACAATTAATTATAAACCTTACCTGCTTCAGTTCTGGCCCACTTTAAA
66 CCTTACTAATATATGGTCACAATTAATTATAAACCTTACCTGCTTCAGTTCTGGCCCACTTTAAA
14849460 AATTAAACAGAATTCGCCCGCGTACGAACTCAAACCTGCGCCCTCTCCATATGCCCAGCACGCTG
131 AATTAAACAGAATTCGCCCGCGTACGAACTCAAACCTGCGCCCTCTCCATATGCCCAGCACGCTG
*
14849525 CTGCCATTGAGCCACAGACGCTTCTTGTGACATAGCTCGGTCGCAATTATTCTTAAACCTTACTT
196 CTGCCACTGAGCCACAGACGCTTCTTGTGACATAGCTCGGTCGCAATTATTCTTAAACCTTACTT
14849590 TAGTGCGATCTGGCTT
261 TAGTGCGATCTGGCTT
14849606 CT
1 CT
14849608 TAAAATAAAA
Statistics
Matches: 273, Mismatches: 3, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
274 238 0.87
276 1 0.00
280 34 0.12
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.28
Consensus pattern (276 bp):
CTCAAACCCTAGACCTCCGTCCACCTTACGCCCACCAGCTACTGATCACTGCACCATGCTTCCTT
CCTTACTAATATATGGTCACAATTAATTATAAACCTTACCTGCTTCAGTTCTGGCCCACTTTAAA
AATTAAACAGAATTCGCCCGCGTACGAACTCAAACCTGCGCCCTCTCCATATGCCCAGCACGCTG
CTGCCACTGAGCCACAGACGCTTCTTGTGACATAGCTCGGTCGCAATTATTCTTAAACCTTACTT
TAGTGCGATCTGGCTT
Found at i:14855230 original size:43 final size:43
Alignment explanation
Indices: 14855155--14855261 Score: 142
Period size: 43 Copynumber: 2.5 Consensus size: 43
14855145 GGTTATGTTC
* * * * *
14855155 TATGAGAAAAGCGTCGTTAAATGTCATTCTTTTTAGCGGCGTT
1 TATGGGAAAAGTGTCGTTAAAGGTCATGCTTTTTAGCAGCGTT
* *
14855198 TATGGTAAAAGTGTCGTTAAAGGTTATGCTTTTTAGCAGCGTT
1 TATGGGAAAAGTGTCGTTAAAGGTCATGCTTTTTAGCAGCGTT
*
14855241 TATGGGAAAAGTGTCGCTAAA
1 TATGGGAAAAGTGTCGTTAAA
14855262 TTTCATGTTC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (43 bp):
TATGGGAAAAGTGTCGTTAAAGGTCATGCTTTTTAGCAGCGTT
Found at i:14856338 original size:36 final size:35
Alignment explanation
Indices: 14856270--14856338 Score: 104
Period size: 37 Copynumber: 1.9 Consensus size: 35
14856260 TTTTTATTTC
*
14856270 ATATTATTTCAATTTTTTATTTTTAATTAATAAAT
1 ATATTATTTCAATTTTTTATTTTTAATAAATAAAT
14856305 ATATTATTTTCAAATTTTTTATTTTT-ATAAATAA
1 ATATTA-TTTC-AATTTTTTATTTTTAATAAATAA
14856339 CTCTTTTATG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
35 6 0.19
36 11 0.35
37 14 0.45
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (35 bp):
ATATTATTTCAATTTTTTATTTTTAATAAATAAAT
Found at i:14856591 original size:18 final size:18
Alignment explanation
Indices: 14856531--14856592 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
14856521 AAAATGTAGA
* *
14856531 TGAAACAATAATGATATT
1 TGAAATAATAATTATATT
* *
14856549 TGAAAT-AT-TTTATATA
1 TGAAATAATAATTATATT
14856565 TGAAAATAATAATTATATT
1 TG-AAATAATAATTATATT
14856584 TGAAATAAT
1 TGAAATAAT
14856593 TACTTCATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
16 7 0.20
17 6 0.17
18 14 0.40
19 8 0.23
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (18 bp):
TGAAATAATAATTATATT
Found at i:14857952 original size:16 final size:17
Alignment explanation
Indices: 14857921--14857954 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14857911 TTTTTTTACA
*
14857921 AAAATAGTATAAAAAAT
1 AAAATACTATAAAAAAT
14857938 AAAATACTA-AAAAAAT
1 AAAATACTATAAAAAAT
14857954 A
1 A
14857955 TCTTAATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAATACTATAAAAAAT
Found at i:14858189 original size:11 final size:11
Alignment explanation
Indices: 14858173--14858206 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
14858163 ATTATGTACT
14858173 AAAATAATATA
1 AAAATAATATA
*
14858184 AAAATAAAATAA
1 AAAATAATAT-A
14858196 AAAATAATATA
1 AAAATAATATA
14858207 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATAATATA
Found at i:14858298 original size:153 final size:147
Alignment explanation
Indices: 14858022--14858415 Score: 576
Period size: 153 Copynumber: 2.6 Consensus size: 147
14858012 GGGTTTTTTT
*
14858022 TACTAAAATAATATAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCTAAAAT-A
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAAT-CTAAAATAA
* *
14858086 AAAAATACAAACAAAGGGCCAAATTCAAGGTTTTTTACTAAATTAATATAAAAACACTAAAATAA
65 AAAAATACAAACAAAGGGCCAAAATCAAGGTTTTTTACTAAATTAATATAAAAAAACTAAAATAA
*
14858151 TAAATTTGAAATATTATG
130 TAAATTTGAAACATTATG
* *
14858169 TACTAAAATAATATAAAAATAAAATA-AAAAATAATATATTTTAAAAAATAAAATCTGAAAATAA
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCT-AAAATAA
*
14858233 AAAAATACAAATAAAACAAAGGGCCAAAATCAGGGTTTTTTTACTAAATTAATATAAAAAAACTA
65 AAAAATAC-----AAACAAAGGGCCAAAATCAAGG-TTTTTTACTAAATTAATATAAAAAAACTA
*
14858298 AAATAATACATTTGAAACATTATG
124 AAATAATAAATTTGAAACATTATG
*
14858322 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCAAAAATA
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTT-AAAAAATAAAAT-CTAAAAT-
* *
14858387 AAAAAAATACCAACAAATGGCCAAAATCA
63 AAAAAAATACAAACAAAGGGCCAAAATCA
14858416 CCGAAAAAAA
Statistics
Matches: 223, Mismatches: 12, Indels: 20
0.87 0.05 0.08
Matches are distributed among these distances:
145 2 0.01
146 31 0.14
147 35 0.16
151 17 0.08
152 20 0.09
153 76 0.34
154 14 0.06
155 17 0.08
156 11 0.05
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.27
Consensus pattern (147 bp):
TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTAAAATAAA
AAAATACAAACAAAGGGCCAAAATCAAGGTTTTTTACTAAATTAATATAAAAAAACTAAAATAAT
AAATTTGAAACATTATG
Found at i:14858389 original size:18 final size:19
Alignment explanation
Indices: 14858368--14858404 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
14858358 ATATTTTAAA
14858368 AAAATAAAAT-CCAA-AAAT
1 AAAA-AAAATACCAACAAAT
14858386 AAAAAAAATACCAACAAAT
1 AAAAAAAATACCAACAAAT
14858405 GGCCAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.29
18 8 0.47
19 4 0.24
ACGTcount: A:0.73, C:0.14, G:0.00, T:0.14
Consensus pattern (19 bp):
AAAAAAAATACCAACAAAT
Found at i:14860728 original size:66 final size:66
Alignment explanation
Indices: 14860593--14860769 Score: 160
Period size: 66 Copynumber: 2.7 Consensus size: 66
14860583 CTTTGGGTCT
* ** * ** *
14860593 TATCCACTGCAGTACAGCACTTC-TCTCGGCTCGTATCCACCGTTGTACAGCACTACCCCCCGCC
1 TATCCACTACAGTACTCCACTCCTTC-CGGCTCGTATCCACCGCAGTACAGCACTACCCACCGCC
14860657 CG
65 CG
* * * ** *
14860659 TATCTACTACAGTACTCCACTCCTTCCGGCTCGTATCCACTGCAGTATAGCACTACCCATGGCCT
1 TATCCACTACAGTACTCCACTCCTTCCGGCTCGTATCCACCGCAGTACAGCACTACCCACCGCCC
14860724 G
66 G
** * * *
14860725 TATCCACTGTAGTACTCCATTCC-TCCTGGGTTGTATCCACCGCAG
1 TATCCACTACAGTACTCCACTCCTTCC-GGCTCGTATCCACCGCAG
14860770 CATGGTACTC
Statistics
Matches: 89, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
65 3 0.03
66 84 0.94
67 2 0.02
ACGTcount: A:0.19, C:0.38, G:0.16, T:0.27
Consensus pattern (66 bp):
TATCCACTACAGTACTCCACTCCTTCCGGCTCGTATCCACCGCAGTACAGCACTACCCACCGCCC
G
Found at i:14867541 original size:128 final size:128
Alignment explanation
Indices: 14867313--14867559 Score: 422
Period size: 128 Copynumber: 1.9 Consensus size: 128
14867303 GACAGTGTTC
**
14867313 GATGCAATAGTTGGTTCCACAAAATCAATTCCTGATGGGAAAAGATTGCTCCATGCTTCATTGAA
1 GATGCAATAGTTGGTTCCACAAAATCAATTCCCAATGGGAAAAGATTGCTCCATGCTTCATTGAA
*
14867378 GAAACATCTGTCAGGTGTTTCTTATATGAACTCATCGTTGAAACCATAGTTTGACCAGCGTTT
66 GAAACATCTGTCAGGTGTTTCTTATATGAACTCATCATTGAAACCATAGTTTGACCAGCGTTT
** * *
14867441 GATGCAATAGTTGGTTCCGTAAAATCAATTCCCAATGGGAAACGATTTCTCCATGCTTCATTGAA
1 GATGCAATAGTTGGTTCCACAAAATCAATTCCCAATGGGAAAAGATTGCTCCATGCTTCATTGAA
*
14867506 GAAACATCTGTTAGGTGTTTCTTATATGAACTCATCATTGAAACCATAGTTTGA
66 GAAACATCTGTCAGGTGTTTCTTATATGAACTCATCATTGAAACCATAGTTTGA
14867560 TCACGTGAAG
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
128 111 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (128 bp):
GATGCAATAGTTGGTTCCACAAAATCAATTCCCAATGGGAAAAGATTGCTCCATGCTTCATTGAA
GAAACATCTGTCAGGTGTTTCTTATATGAACTCATCATTGAAACCATAGTTTGACCAGCGTTT
Found at i:14873747 original size:20 final size:21
Alignment explanation
Indices: 14873719--14873760 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
14873709 TAATTTCAAG
14873719 TTTA-ATTT-TGTACTAACTAT
1 TTTATATTTATGT-CTAACTAT
*
14873739 TTTATTTTTATGTCTAACTAT
1 TTTATATTTATGTCTAACTAT
14873760 T
1 T
14873761 GTAATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 12 0.63
22 3 0.16
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.60
Consensus pattern (21 bp):
TTTATATTTATGTCTAACTAT
Found at i:14874094 original size:2 final size:2
Alignment explanation
Indices: 14874087--14874123 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
14874077 CCTAACTGTA
14874087 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14874124 AAAGTGCAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14874307 original size:44 final size:44
Alignment explanation
Indices: 14874253--14874343 Score: 128
Period size: 44 Copynumber: 2.1 Consensus size: 44
14874243 GTTGAAGTAA
* * * * *
14874253 AATAGAAGTTGTGATAGTTATACATTTAAAAGTAATTACAATTT
1 AATAAAAGTTGTGATAATTACACATCTAAAAATAATTACAATTT
*
14874297 AATAAAAGTTGTGATAATTACACATCTAAAAATAATTATAATTT
1 AATAAAAGTTGTGATAATTACACATCTAAAAATAATTACAATTT
14874341 AAT
1 AAT
14874344 TTACACCTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.37
Consensus pattern (44 bp):
AATAAAAGTTGTGATAATTACACATCTAAAAATAATTACAATTT
Found at i:14874609 original size:21 final size:23
Alignment explanation
Indices: 14874569--14874611 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
14874559 GTTGAATATG
*
14874569 TTAAAAATGTTTTAATTATAATT
1 TTAAAAATGTTCTAATTATAATT
14874592 TTAAAAAT-TTCT-ATTATAAT
1 TTAAAAATGTTCTAATTATAAT
14874612 ATTTGAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 3 0.16
23 8 0.42
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
TTAAAAATGTTCTAATTATAATT
Done.