Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 58 of 311
Found at i:17020474 original size:27 final size:26
Alignment explanation
Indices: 17020414--17020475 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
17020404 ATAAGACTCC
17020414 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * * *
17020440 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
17020468 ATTTTATT
1 ATTTTATT
17020476 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 14 0.48
28 13 0.45
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:17024446 original size:6 final size:6
Alignment explanation
Indices: 17024424--17024506 Score: 51
Period size: 6 Copynumber: 13.0 Consensus size: 6
17024414 CTAATTCTCC
* * * * *
17024424 TTCTTT TTGTTT CTCTTT TTCTTT CTTC-TT TTCTCCT TTCTAT TTCATCTG
1 TTCTTT TTCTTT TTCTTT TTCTTT -TTCTTT TTCT-TT TTCTTT TTC-T-TT
*
17024475 TTCTTT TTCTTT TTCTTT CTTTTATT TTCTTT
1 TTCTTT TTCTTT TTCTTT -TTCT-TT TTCTTT
17024507 GTTTATTCTT
Statistics
Matches: 59, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
5 3 0.05
6 35 0.59
7 16 0.27
8 5 0.08
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.73
Consensus pattern (6 bp):
TTCTTT
Found at i:17024469 original size:21 final size:20
Alignment explanation
Indices: 17024433--17024497 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 20
17024423 CTTCTTTTTG
* *
17024433 TTTCTCTTTTTCTTTCTTCT
1 TTTCTCTTTCTATTTCTTCT
*
17024453 TTTCTCCTTTCTATTTCATCT
1 TTTCT-CTTTCTATTTCTTCT
* * *
17024474 GTTCTTTTTCTTTTTCTTTCT
1 TTTCTCTTTCTATTTC-TTCT
17024495 TTT
1 TTT
17024498 ATTTTCTTTG
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
20 14 0.40
21 21 0.60
ACGTcount: A:0.03, C:0.23, G:0.02, T:0.72
Consensus pattern (20 bp):
TTTCTCTTTCTATTTCTTCT
Found at i:17024515 original size:21 final size:20
Alignment explanation
Indices: 17024479--17024522 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
17024469 CATCTGTTCT
*
17024479 TTTTCTTTTTCTTTCTTTTA
1 TTTTCTTTTTCTTTCTTTAA
17024499 TTTTCTTTGTT-TATTCTTTAA
1 TTTTCTTT-TTCT-TTCTTTAA
17024520 TTT
1 TTT
17024523 ATTATTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTCTTTTTCTTTCTTTAA
Found at i:17024598 original size:18 final size:19
Alignment explanation
Indices: 17024563--17024607 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
17024553 TTTAAACTTA
*
17024563 AATATTATGTATTATGTAT
1 AATATTATATATTATGTAT
*
17024582 ATTATTATATA-TATGTAT
1 AATATTATATATTATGTAT
17024600 AATATTAT
1 AATATTAT
17024608 TACACAAGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (19 bp):
AATATTATATATTATGTAT
Found at i:17025929 original size:11 final size:11
Alignment explanation
Indices: 17025913--17025967 Score: 76
Period size: 11 Copynumber: 5.0 Consensus size: 11
17025903 CACAATAGTC
17025913 CTCTCACAATT
1 CTCTCACAATT
17025924 CTCTCACAATT
1 CTCTCACAATT
*
17025935 CTCTTACAATT
1 CTCTCACAATT
17025946 CTCTC-CAAATT
1 CTCTCAC-AATT
*
17025957 CTCTCAAAATT
1 CTCTCACAATT
17025968 TTCAATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
10 1 0.03
11 38 0.97
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.38
Consensus pattern (11 bp):
CTCTCACAATT
Found at i:17027141 original size:7 final size:7
Alignment explanation
Indices: 17027131--17027176 Score: 83
Period size: 7 Copynumber: 6.6 Consensus size: 7
17027121 AATCATTTTT
17027131 TATTTAG
1 TATTTAG
17027138 TATTTAG
1 TATTTAG
*
17027145 TATTTAA
1 TATTTAG
17027152 TATTTAG
1 TATTTAG
17027159 TATTTAG
1 TATTTAG
17027166 TATTTAG
1 TATTTAG
17027173 TATT
1 TATT
17027177 ACCTATATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:17028357 original size:53 final size:53
Alignment explanation
Indices: 17028296--17028474 Score: 195
Period size: 53 Copynumber: 3.3 Consensus size: 53
17028286 TTTATTTTAT
*
17028296 TAAAATAAATGTTCTTTTAAATTTATATTTAATTTTTATATAGTTTCAATTAA
1 TAAAATAAAAGTTCTTTTAAATTTATATTTAATTTTTATATAGTTTCAATTAA
* * ** * *
17028349 TAAAATAAAAGTTGTTTTTAA--TAT-TTTAATTGTACTT-TACTTTTTTTAATTTTAT
1 TAAAATAAAAGTTCTTTTAAATTTATATTTAATT-T--TTATA-TAGTTTCAA--TTAA
*
17028404 TAAAATAAATGTTCTTTTAAATTTATATTTAATTTTTATATAGTTTCAATTAA
1 TAAAATAAAAGTTCTTTTAAATTTATATTTAATTTTTATATAGTTTCAATTAA
*
17028457 TAAAATAAAAGTTGTTTT
1 TAAAATAAAAGTTCTTTT
17028475 TAATATTTTA
Statistics
Matches: 100, Mismatches: 16, Indels: 20
0.74 0.12 0.15
Matches are distributed among these distances:
50 7 0.07
51 4 0.04
52 2 0.02
53 45 0.45
55 29 0.29
56 2 0.02
57 4 0.04
58 7 0.07
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (53 bp):
TAAAATAAAAGTTCTTTTAAATTTATATTTAATTTTTATATAGTTTCAATTAA
Found at i:17028409 original size:108 final size:108
Alignment explanation
Indices: 17028220--17028534 Score: 596
Period size: 108 Copynumber: 2.9 Consensus size: 108
17028210 TGTAGAAACT
*
17028220 TTTTTATATAGTTTC-ATATAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACTTTACTTT
1 TTTTTATATAGTTTCAAT-TAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTT
*
17028284 TTTTTATTTTATTAAAATAAATGTTCTTTTAAATTTATATTTAA
65 TTTTAATTTTATTAAAATAAATGTTCTTTTAAATTTATATTTAA
17028328 TTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTTT
1 TTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTTT
17028393 TTTAATTTTATTAAAATAAATGTTCTTTTAAATTTATATTTAA
66 TTTAATTTTATTAAAATAAATGTTCTTTTAAATTTATATTTAA
17028436 TTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTTT
1 TTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTTT
17028501 TTTAATTTTATTAAAATAAATGTTCTTTTAAATT
66 TTTAATTTTATTAAAATAAATGTTCTTTTAAATT
17028535 AGCCAATATT
Statistics
Matches: 204, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
108 202 0.99
109 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (108 bp):
TTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTTT
TTTAATTTTATTAAAATAAATGTTCTTTTAAATTTATATTTAA
Found at i:17028586 original size:131 final size:130
Alignment explanation
Indices: 17028425--17028811 Score: 697
Period size: 129 Copynumber: 3.0 Consensus size: 130
17028415 TTCTTTTAAA
*
17028425 TTTATATTTA-ATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTG
1 TTTATATTTATTTTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTG
17028489 TACTTTACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATT
66 TACTTTACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATT
17028554 TTTATATTTATTTATTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATT
1 TTTATATTTATTT-TTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATT
*
17028619 GTACTTTACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTTT
65 GTACTTTACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTAT
17028684 T
130 T
17028685 TTTA-ATTTATTTTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTG
1 TTTATATTTATTTTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTG
* * * *
17028749 TACTTTACTTTTTTTAATTTTAATACAATAAATGTTCATTTAAATTAGCCAATAATTTTATTA
66 TACTTTACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTA
17028812 AAATAAATGT
Statistics
Matches: 249, Mismatches: 7, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
129 120 0.48
130 9 0.04
131 120 0.48
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (130 bp):
TTTATATTTATTTTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTG
TACTTTACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATT
Found at i:17028840 original size:38 final size:38
Alignment explanation
Indices: 17028763--17028849 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 38
17028753 TTACTTTTTT
* *
17028763 TAATTTTAATACAATAAATGTTCATTTAAATTAGCCAA
1 TAATTTTAATAAAATAAATGTTCATTTAAATTAGACAA
* *
17028801 TAATTTTATTAAAATAAATGTT-ATTTTGAA-TACGACAA
1 TAATTTTAATAAAATAAATGTTCA-TTTAAATTA-GACAA
*
17028839 TATTTTTAATA
1 TAATTTTAATA
17028850 TTTTTAATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
37 3 0.07
38 38 0.93
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.44
Consensus pattern (38 bp):
TAATTTTAATAAAATAAATGTTCATTTAAATTAGACAA
Found at i:17032784 original size:49 final size:49
Alignment explanation
Indices: 17032712--17032940 Score: 248
Period size: 49 Copynumber: 4.6 Consensus size: 49
17032702 CTGATACGCA
* * *
17032712 TAGTAGCCTACACTTAGTACTACACATGTGACCAATAATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATTCGGTACACG
* * *
17032761 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAATTC-GGTACACG
* * *
17032811 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-ATT-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA--CAATTCG-GTACACG
* * * * * *
17032862 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCAGAACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATTCGGTACACG
17032911 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
17032941 TATTCACAAT
Statistics
Matches: 149, Mismatches: 22, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
48 1 0.01
49 66 0.44
50 45 0.30
51 35 0.23
52 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATTCGGTACACG
Found at i:17034712 original size:127 final size:126
Alignment explanation
Indices: 17034486--17034787 Score: 469
Period size: 127 Copynumber: 2.4 Consensus size: 126
17034476 AGTCTAAGGC
** * *
17034486 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACACAAGAGCTTTTTTCCATAATTTTGCTGAC
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTTCCATAATTTTACTGAC
* * * * *
17034551 AGTGCATCCTTTTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTATCAAAATTATT
66 AGTGCATCATTCTTGAAACGTTTTTGACACTATTTATTCAGAAACATCTTATCAAAATTA-T
*
17034613 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTAGGAGTTTTTTTCCATAATTTTACTGAC
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTTCCATAATTTTACTGAC
* *
17034678 AGTGTATCATTCTTGAAACGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTAT
66 AGTGCATCATTCTTGAAACGTTTTTGACACTATTTATTCAGAAACATCTTATCAAAATTAT
* *
17034739 TTTTTCAGATACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTT
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTT
17034788 GGTAATTAAT
Statistics
Matches: 160, Mismatches: 15, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
126 47 0.29
127 113 0.71
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (126 bp):
TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTTCCATAATTTTACTGAC
AGTGCATCATTCTTGAAACGTTTTTGACACTATTTATTCAGAAACATCTTATCAAAATTAT
Found at i:17035666 original size:16 final size:16
Alignment explanation
Indices: 17035622--17035667 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
17035612 TTACTTTATG
*
17035622 TAATTAATGTAAAATGA
1 TAATTAAT-TAAAATAA
17035639 -AATT-ATTCAAAATAA
1 TAATTAATT-AAAATAA
17035654 TAATTAATTAAAAT
1 TAATTAATTAAAAT
17035668 CATTAAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
14 1 0.04
15 8 0.32
16 13 0.52
17 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (16 bp):
TAATTAATTAAAATAA
Found at i:17037138 original size:31 final size:32
Alignment explanation
Indices: 17037097--17037217 Score: 138
Period size: 31 Copynumber: 3.6 Consensus size: 32
17037087 ATTTATCTAT
17037097 TTTTTAAATATAAAAATTAAAATATAATTTAA
1 TTTTTAAATATAAAAATTAAAATATAATTTAA
17037129 TTTTT-AATATAAAAATTTAACATACTCATAATTTATCTA
1 TTTTTAAATATAAAAA-TTAA-A-A-T-ATAATTTA---A
*
17037168 TTTTTTAAATATAAAAATTAAAATTTAATTTAA
1 -TTTTTAAATATAAAAATTAAAATATAATTTAA
17037201 TTTTT-AATATAAAAATT
1 TTTTTAAATATAAAAATT
17037218 TAACATACTC
Statistics
Matches: 78, Mismatches: 1, Indels: 21
0.78 0.01 0.21
Matches are distributed among these distances:
31 22 0.28
32 14 0.18
33 2 0.03
34 1 0.01
35 1 0.01
36 15 0.19
37 1 0.01
38 1 0.01
39 2 0.03
40 9 0.12
41 10 0.13
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (32 bp):
TTTTTAAATATAAAAATTAAAATATAATTTAA
Found at i:17037169 original size:72 final size:72
Alignment explanation
Indices: 17037085--17037230 Score: 283
Period size: 72 Copynumber: 2.0 Consensus size: 72
17037075 ATACAATGAG
17037085 TAATTTATCTATTTTTTAAATATAAAAATTAAAATATAATTTAATTTTTAATATAAAAATTTAAC
1 TAATTTATCTATTTTTTAAATATAAAAATTAAAATATAATTTAATTTTTAATATAAAAATTTAAC
17037150 ATACTCA
66 ATACTCA
*
17037157 TAATTTATCTATTTTTTAAATATAAAAATTAAAATTTAATTTAATTTTTAATATAAAAATTTAAC
1 TAATTTATCTATTTTTTAAATATAAAAATTAAAATATAATTTAATTTTTAATATAAAAATTTAAC
17037222 ATACTCA
66 ATACTCA
17037229 TA
1 TA
17037231 TTCAATACTC
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (72 bp):
TAATTTATCTATTTTTTAAATATAAAAATTAAAATATAATTTAATTTTTAATATAAAAATTTAAC
ATACTCA
Found at i:17041564 original size:42 final size:42
Alignment explanation
Indices: 17041439--17041565 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 42
17041429 TTTCGCCTTC
* * *
17041439 TAAAAGGGATGAAAGGTTAAAAACACCTATACATACCCCTAG
1 TAAAAGGGATGAAAGGTTAAAAACACCTGTACATACACCAAG
* * *
17041481 TATAAGGGATGAAAGGTTAAAAACACCAGTAAATACACCAAG
1 TAAAAGGGATGAAAGGTTAAAAACACCTGTACATACACCAAG
* * *
17041523 TAAAAAGGATGAAAGGTTAAAAACACCTGTGCATACTCCAAG
1 TAAAAGGGATGAAAGGTTAAAAACACCTGTACATACACCAAG
17041565 T
1 T
17041566 GGGCGATTTT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.46, C:0.17, G:0.18, T:0.19
Consensus pattern (42 bp):
TAAAAGGGATGAAAGGTTAAAAACACCTGTACATACACCAAG
Found at i:17048447 original size:28 final size:28
Alignment explanation
Indices: 17048407--17048465 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
17048397 TGATGATTAA
17048407 GAAAACTTGGGTTTGGTGGCTTTGTTTT
1 GAAAACTTGGGTTTGGTGGCTTTGTTTT
17048435 GAAAACTTGGGTTTGGTGGCTTTGTTTT
1 GAAAACTTGGGTTTGGTGGCTTTGTTTT
17048463 GAA
1 GAA
17048466 CTTTATCAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.07, G:0.32, T:0.44
Consensus pattern (28 bp):
GAAAACTTGGGTTTGGTGGCTTTGTTTT
Found at i:17051163 original size:19 final size:18
Alignment explanation
Indices: 17051122--17051165 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
17051112 TGATTTATTT
* *
17051122 ATTTTTATTTAATCAGTT
1 ATTTTTATTTAATCAATA
*
17051140 GTTTTTATTCTAATCAATA
1 ATTTTTATT-TAATCAATA
17051159 ATTTTTA
1 ATTTTTA
17051166 CTTGTATTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.59
Consensus pattern (18 bp):
ATTTTTATTTAATCAATA
Found at i:17052770 original size:17 final size:19
Alignment explanation
Indices: 17052737--17052779 Score: 72
Period size: 17 Copynumber: 2.4 Consensus size: 19
17052727 TATTTGTAAT
17052737 ATTATTAGTTATATTTTTC
1 ATTATTAGTTATATTTTTC
17052756 ATTATTA-TT-TATTTTTC
1 ATTATTAGTTATATTTTTC
17052773 ATTATTA
1 ATTATTA
17052780 CTTCTATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 15 0.62
18 2 0.08
19 7 0.29
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (19 bp):
ATTATTAGTTATATTTTTC
Found at i:17053152 original size:27 final size:27
Alignment explanation
Indices: 17053095--17053163 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 27
17053085 TCAGTACAAG
* * * **
17053095 TTATTTCATATATTGTTTATTTTGAGT
1 TTATTTTATATATTATTTATTTTAAAC
17053122 TTATTTTATATATTATTTATTTTAAAC
1 TTATTTTATATATTATTTATTTTAAAC
17053149 TTA---TATATATTATTT
1 TTATTTTATATATTATTT
17053164 TAAATTTTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 12 0.32
27 25 0.68
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (27 bp):
TTATTTTATATATTATTTATTTTAAAC
Found at i:17053153 original size:20 final size:20
Alignment explanation
Indices: 17053127--17053167 Score: 64
Period size: 20 Copynumber: 1.9 Consensus size: 20
17053117 TGAGTTTATT
17053127 TTATATATTATTTATTTTAAAC
1 TTATATA-TA-TTATTTTAAAC
17053149 TTATATATATTATTTTAAA
1 TTATATATATTATTTTAAA
17053168 TTTTGTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 2 0.11
22 7 0.37
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
TTATATATATTATTTTAAAC
Found at i:17056303 original size:102 final size:103
Alignment explanation
Indices: 17056074--17056338 Score: 444
Period size: 102 Copynumber: 2.6 Consensus size: 103
17056064 TTGTATATAA
** *
17056074 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
17056138 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAA-GTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
17056178 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
17056243 TGAAA-TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAAGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
17056280 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
17056339 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
102 88 0.58
104 64 0.42
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAAGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:17063301 original size:105 final size:105
Alignment explanation
Indices: 17063119--17063387 Score: 468
Period size: 105 Copynumber: 2.6 Consensus size: 105
17063109 TTGTATATAA
** *
17063119 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
17063183 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
17063224 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
17063289 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
17063329 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
17063388 ATAACGGTTA
Statistics
Matches: 156, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
105 155 0.99
106 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:17068355 original size:42 final size:43
Alignment explanation
Indices: 17068306--17068419 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 43
17068296 CTGAGATGTA
** *
17068306 GTGTAAGACCATGTCTGGGACATCGGCATCG-TATCTG-ATTTC
1 GTGTAAGACCATGTCTGGGACAGAGGCATCGATA-CTGAATTAC
*
17068348 GTGTAAGACCCTGTCTGGGACAGAGGCATCGATACTGAATTAC
1 GTGTAAGACCATGTCTGGGACAGAGGCATCGATACTGAATTAC
* * *
17068391 ATGTAAGACCACGTCTAGGAC-GTAGGCAT
1 GTGTAAGACCATGTCTGGGACAG-AGGCAT
17068420 TGTACTCGTT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 32 0.52
43 29 0.48
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGAGGCATCGATACTGAATTAC
Found at i:17073011 original size:21 final size:22
Alignment explanation
Indices: 17072948--17073017 Score: 133
Period size: 22 Copynumber: 3.2 Consensus size: 22
17072938 TTTACGTCTC
17072948 ATTCTGAGCAAATATTTCTTTT
1 ATTCTGAGCAAATATTTCTTTT
17072970 ATTCTGAGCAAATATTTCTTTT
1 ATTCTGAGCAAATATTTCTTTT
17072992 ATTCTGAGCAAATA-TTCTTTT
1 ATTCTGAGCAAATATTTCTTTT
17073013 ATTCT
1 ATTCT
17073018 TGTTTTTAGT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
21 12 0.25
22 36 0.75
ACGTcount: A:0.27, C:0.14, G:0.09, T:0.50
Consensus pattern (22 bp):
ATTCTGAGCAAATATTTCTTTT
Found at i:17075425 original size:25 final size:25
Alignment explanation
Indices: 17075391--17075440 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
17075381 TATGTCTTAA
17075391 ACGGAGAGATCCTGTATAAAAAGAG
1 ACGGAGAGATCCTGTATAAAAAGAG
17075416 ACGGAGAGATCCTGTATAAAAAGAG
1 ACGGAGAGATCCTGTATAAAAAGAG
17075441 GAAGGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (25 bp):
ACGGAGAGATCCTGTATAAAAAGAG
Found at i:17078043 original size:89 final size:89
Alignment explanation
Indices: 17077950--17078161 Score: 205
Period size: 89 Copynumber: 2.4 Consensus size: 89
17077940 AGATTGTAGA
** * *
17077950 TCTTATCTCCATGGGGTAGTAATAGAGTAGATTGAGGA-CAAAGAATCTTATCTCCATGAAGCAG
1 TCTTATCTCCATGAAGTAGCAATAGAGTAGATTGAAGATCAAAG-ATCTTATCTCCATGAAGCAG
17078014 CAATGGAGCAAATCTAAGCCACCAG
65 CAATGGAGCAAATCTAAGCCACCAG
* * * * ** * *
17078039 TCTTATCTCCCTGAAGTAGCAGTGGAGTATATTGAAGATCGTAGATCTTATCTCCATGAGGTAGC
1 TCTTATCTCCATGAAGTAGCAATAGAGTAGATTGAAGATCAAAGATCTTATCTCCATGAAGCAGC
* * *
17078104 AATGGAGCAGATC-AAG-GACAGAG
66 AATGGAGCAAATCTAAGCCAC-CAG
* * *
17078127 AATTTTATCTCCATGAAGTAGCAATGGAGCAGATT
1 --TCTTATCTCCATGAAGTAGCAATAGAGTAGATT
17078162 TAAGCCACCC
Statistics
Matches: 99, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
87 2 0.02
88 5 0.05
89 61 0.62
90 31 0.31
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (89 bp):
TCTTATCTCCATGAAGTAGCAATAGAGTAGATTGAAGATCAAAGATCTTATCTCCATGAAGCAGC
AATGGAGCAAATCTAAGCCACCAG
Found at i:17078044 original size:134 final size:134
Alignment explanation
Indices: 17077889--17078428 Score: 545
Period size: 134 Copynumber: 4.0 Consensus size: 134
17077879 GTAGAGAAGA
* * * * *
17077889 AGATTTAAGTCACAAGTCTTATCTCTCTGAAATAGCAGTGGAGCAGATTGAAGATTGTAGATCTT
1 AGATTTAAGCCACCAGTCTTATCTCCCTGAAGTAGCAGTGGAGTAGATTGAAGATTGTAGATCTT
* * * ** *
17077954 ATCTCCATGGGGTAGTAATAGAGTAGATTGAGGACAAAGAATCTTATCTCCATGAAGCAGCAATG
66 ATCTCCATGAGGTAGCAATGGAGTAGATCAAGGACAAAGAATCTTATCTCCATGAAGTAGCAATG
17078019 GAGC
131 GAGC
* * * *
17078023 AAATCTAAGCCACCAGTCTTATCTCCCTGAAGTAGCAGTGGAGTATATTGAAGATCGTAGATCTT
1 AGATTTAAGCCACCAGTCTTATCTCCCTGAAGTAGCAGTGGAGTAGATTGAAGATTGTAGATCTT
* * *
17078088 ATCTCCATGAGGTAGCAATGGAGCAGATCAAGGACAGAGAATTTTATCTCCATGAAGTAGCAATG
66 ATCTCCATGAGGTAGCAATGGAGTAGATCAAGGACAAAGAATCTTATCTCCATGAAGTAGCAATG
17078153 GAGC
131 GAGC
* * * * * * * *
17078157 AGATTTAAGCCACCCG-CATTATCTCCTTGGAGTAGTAAG-GGAGAAAATTAAAGATTGTAGATT
1 AGATTTAAGCCACCAGTC-TTATCTCCCTGAAGTAG-CAGTGGAGTAGATTGAAGATTGTAGATC
* * * ** * * * *
17078220 TTATCTTCC-CGAAGTAGCAGTGGAGTAGATCAAATACGACGAGTCTTATCTTCATGAAGTAGCA
64 TTATC-TCCATGAGGTAGCAATGGAGTAGATCAAGGACAAAGAATCTTATCTCCATGAAGTAGCA
17078284 ATGGAGC
128 ATGGAGC
* * * **
17078291 AGATTTAGGCCACCAGCCTTATCCCCCT-AAGGTAGCAGTGGAGTAGATTGAAGATTACAGATCT
1 AGATTTAAGCCACCAGTCTTATCTCCCTGAA-GTAGCAGTGGAGTAGATTGAAGATTGTAGATCT
* * * ** *
17078355 TATCTCTC-TGAGGTAGCAGTGGAGCAGATTGAA-GACTGTAG-ATCTTATCTCCCTGAAGTAGC
65 TATCTC-CATGAGGTAGCAATGGAGTAGA-TCAAGGAC-AAAGAATCTTATCTCCATGAAGTAGC
*
17078417 AGTGGAGC
127 AATGGAGC
17078425 AGAT
1 AGAT
17078429 CGAAAACTGC
Statistics
Matches: 333, Mismatches: 64, Indels: 18
0.80 0.15 0.04
Matches are distributed among these distances:
133 6 0.02
134 316 0.95
135 11 0.03
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (134 bp):
AGATTTAAGCCACCAGTCTTATCTCCCTGAAGTAGCAGTGGAGTAGATTGAAGATTGTAGATCTT
ATCTCCATGAGGTAGCAATGGAGTAGATCAAGGACAAAGAATCTTATCTCCATGAAGTAGCAATG
GAGC
Found at i:17078093 original size:45 final size:44
Alignment explanation
Indices: 17077905--17078474 Score: 254
Period size: 45 Copynumber: 12.8 Consensus size: 44
17077895 AAGTCACAAG
* * * *
17077905 TCTTATCTCTCTGAAATAGCAGTGGAGCAGATTGAAGATTGTAGA
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGA-CGCAGA
* ** * * * * * **
17077950 TCTTATCTCCATGGGGTAGTAATAGAGTAGATTGAGGACAAAGAA
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGACGCAG-A
* * * *
17077995 TCTTATCTCCATGAAGCAGCAATGGAGCAAATCT-AAGCCAC-CAG-
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGAT-TGAAG--ACGCAGA
* * *
17078039 TCTTATCTCCCTGAAGTAGCAGTGGAGTATATTGAAGATCGTAGA
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGA-CGCAGA
* * * *
17078084 TCTTATCTCCATGAGGTAGCAATGGAGCAGA-TCAAGGACAG-AGAA
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAA-GAC-GCAG-A
* * * * *
17078129 TTTTATCTCCATGAAGTAGCAATGGAGCAGATTTAAGCCAC-CCG-
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAG--ACGCAGA
* * * * * * * *
17078173 -CATTATCTCCTTGGAGTAGTAAG-GGAGAAAATTAAAGATTGTAGA
1 TC-TTATCTCCCTGAAGTAG-CAGTGGAGCAGATTGAAGA-CGCAGA
* * ** *
17078218 TTTTATCTTCCC-GAAGTAGCAGTGGAGTAGATCAAATACG-ACGA
1 TCTTATC-TCCCTGAAGTAGCAGTGGAGCAGATTGAAGACGCA-GA
* * * * *
17078262 GTCTTATCTTCATGAAGTAGCAATGGAGCAGATTTAGGCCAC-CAG-
1 -TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAG--ACGCAGA
* * * **
17078307 CCTTATCCCCCT-AAGGTAGCAGTGGAGTAGATTGAAGATTACAGA
1 TCTTATCTCCCTGAA-GTAGCAGTGGAGCAGATTGAAGA-CGCAGA
* * *
17078352 TCTTATCTCTCTGAGGTAGCAGTGGAGCAGATTGAAGACTGTAGA
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGAC-GCAGA
* *
17078397 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATCGAAAACTGC-GAA
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGAC-GCAG-A
* * *
17078442 TCTTATCTTCATAAAGTTA-CAGTGGAGCAGATT
1 TCTTATCTCCCTGAAG-TAGCAGTGGAGCAGATT
17078475 AAAGCCATCA
Statistics
Matches: 395, Mismatches: 93, Indels: 74
0.70 0.17 0.13
Matches are distributed among these distances:
42 3 0.01
43 5 0.01
44 104 0.26
45 262 0.66
46 14 0.04
47 7 0.02
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGACGCAGA
Found at i:17078313 original size:89 final size:88
Alignment explanation
Indices: 17078220--17078496 Score: 228
Period size: 89 Copynumber: 3.1 Consensus size: 88
17078210 ATTGTAGATT
*
17078220 TTATCTTCCCGAAGTAGCAGTGGAGTAGATCAAATACGACGAGTCTTATCTTCATGAAGTAGCAA
1 TTATC-TCCCGAAGTAGCAGTGGAGTAGATCAAATACGACGA-TCTTATCTTCATGAAGTAGCAG
* * *
17078285 TGGAGCAGATTTAGGCCACCAG-CC
64 TGGAGCAGATTGAAGACACCAGACC
* * * *
17078309 TTATCCCCCTAAGGTAGCAGTGGAGTAGATTGAAGATTAC-A-GATCTTATCTCTC-TGAGGTAG
1 TTATCTCCCGAA-GTAGCAGTGGAGTAGA-TCAA-A-TACGACGATCTTATCT-TCATGAAGTAG
*** *
17078371 CAGTGGAGCAGATTGAAGACTGTAGATC
61 CAGTGGAGCAGATTGAAGACACCAGACC
* *
17078399 TTATCTCCCTGAAGTAGCAGTGGAGCAGATCGAAA-ACTG-CGAATCTTATCTTCATAAAGTTA-
1 TTATCTCCC-GAAGTAGCAGTGGAGTAGATC-AAATAC-GACG-ATCTTATCTTCATGAAG-TAG
* * *
17078461 CAGTGGAGCAGATTAAAGCCATCA-ACC
61 CAGTGGAGCAGATTGAAGACACCAGACC
*
17078488 CTATCTCCC
1 TTATCTCCC
17078497 TAAAGTTGCA
Statistics
Matches: 149, Mismatches: 25, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
87 2 0.01
88 5 0.03
89 69 0.46
90 64 0.43
91 6 0.04
92 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (88 bp):
TTATCTCCCGAAGTAGCAGTGGAGTAGATCAAATACGACGATCTTATCTTCATGAAGTAGCAGTG
GAGCAGATTGAAGACACCAGACC
Found at i:17080741 original size:27 final size:27
Alignment explanation
Indices: 17080684--17080741 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
17080674 TCATTACAAA
* **
17080684 TTATTTCATATATTGTTTATTTTGAGT
1 TTATTTCATATATTGTTTATTTTAAAC
*
17080711 TTATTTTATATATTGTTTATTTTAAAC
1 TTATTTCATATATTGTTTATTTTAAAC
17080738 TTAT
1 TTAT
17080742 ATATATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.03, G:0.07, T:0.64
Consensus pattern (27 bp):
TTATTTCATATATTGTTTATTTTAAAC
Found at i:17080751 original size:27 final size:27
Alignment explanation
Indices: 17080691--17080747 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
17080681 AAATTATTTC
* ** *
17080691 ATATATTGTTTATTTTGAGTTTATTTT
1 ATATATTGTTTATTTTAAACTTATTAT
17080718 ATATATTGTTTATTTTAAACTTA-TAT
1 ATATATTGTTTATTTTAAACTTATTAT
17080744 ATAT
1 ATAT
17080748 TATTTTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (27 bp):
ATATATTGTTTATTTTAAACTTATTAT
Found at i:17087909 original size:17 final size:17
Alignment explanation
Indices: 17087883--17087917 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
17087873 ACAGATGTTT
17087883 ATATAATTTTTTAATAA
1 ATATAATTTTTTAATAA
* *
17087900 ATATATTTTTTTCATAA
1 ATATAATTTTTTAATAA
17087917 A
1 A
17087918 ATTTTCAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
ATATAATTTTTTAATAA
Found at i:17093343 original size:20 final size:20
Alignment explanation
Indices: 17093314--17093354 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
17093304 AGGTACAAGT
17093314 GGATAGGAATTA-GGATACA
1 GGATAGGAATTAGGGATACA
17093333 GGATAAGGAATTAGGGATACA
1 GGAT-AGGAATTAGGGATACA
17093354 G
1 G
17093355 TTCGAGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.20
20 8 0.40
21 8 0.40
ACGTcount: A:0.41, C:0.05, G:0.34, T:0.20
Consensus pattern (20 bp):
GGATAGGAATTAGGGATACA
Found at i:17096023 original size:168 final size:166
Alignment explanation
Indices: 17095739--17096238 Score: 644
Period size: 168 Copynumber: 3.0 Consensus size: 166
17095729 ATCAGAGATT
* **
17095739 GAATATCCATGCAAGAGCCATATTGAAGATCAGAAGAGTGATGATCAAATGTGTCTAAAACTTGT
1 GAATATCCATGCAAGAGCCATATTGAAGATC-CAAGAGTGATGATCAAATGTGTCTAAAACCCGT
* * *
17095804 CAAGGAAGAACCTAAAGATGATGTTTGTGATAAACCCTTGTATGGGACTCCTTCATGCAAGGAAA
65 CAAGGAAGAAGCTAAAGATGATGTTTGTGATAAA-CCTTGTATGAGACTCCTCCATGCAAGGAAA
* * *
17095869 CTAAGAGGAAGAAATCACGACCACTATGTTCTAACA-CA
129 CTAGGAGGAAGAAATCACAACCACAATGTTCTAA-AGCA
* * *
17095907 GAATATCTATGCAAGAGCTATATTGAAGATCCTAAGAGTGATGATCAATTGTGTCTAAAACCCGT
1 GAATATCCATGCAAGAGCCATATTGAAGATCC-AAGAGTGATGATCAAATGTGTCTAAAACCCGT
* * *
17095972 CAAGGAAGAAGCTAAAGATGGTGTTTATGATGAAAGCTTGTATGAGACTCCTCCATGCAA-GAAA
65 CAAGGAAGAAGCTAAAGATGATGTTTGTGAT-AAACCTTGTATGAGACTCCTCCATGCAAGGAAA
* * **
17096036 GCTAGGAGGAATAAATCACAATCACAATGTTCTAAAGTT
129 -CTAGGAGGAAGAAATCACAACCACAATGTTCTAAAGCA
* * * * *
17096075 GAATATCCATGCAAGAACCATATTGAAGATAACAAGAGTGAAGATCAAGTGAGTCTAAAACCCGT
1 GAATATCCATGCAAGAGCCATATTGAAGAT-CCAAGAGTGATGATCAAATGTGTCTAAAACCCGT
*
17096140 CAAAGAAGAAGCTAAAGATGATGTTTGTGATAAAACCTTGTATGAGACTCCTCCATGCAAGGAAA
65 CAAGGAAGAAGCTAAAGATGATGTTTGTGAT-AAACCTTGTATGAGACTCCTCCATGCAAGGAAA
* * * **
17096205 CTAGGAAGAAGAAACCGCAATAACAATGTTCTAA
129 CTAGGAGGAAGAAATCACAACCACAATGTTCTAA
17096239 GCCTCTAAAG
Statistics
Matches: 290, Mismatches: 36, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
167 5 0.02
168 277 0.96
169 8 0.03
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (166 bp):
GAATATCCATGCAAGAGCCATATTGAAGATCCAAGAGTGATGATCAAATGTGTCTAAAACCCGTC
AAGGAAGAAGCTAAAGATGATGTTTGTGATAAACCTTGTATGAGACTCCTCCATGCAAGGAAACT
AGGAGGAAGAAATCACAACCACAATGTTCTAAAGCA
Found at i:17098648 original size:21 final size:21
Alignment explanation
Indices: 17098618--17098659 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
17098608 TAAATTACAA
17098618 AATACAATCCTTCAATGCAAG
1 AATACAATCCTTCAATGCAAG
*
17098639 AATACCATCCTTCAATGCAAG
1 AATACAATCCTTCAATGCAAG
17098660 GGTATGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.26, G:0.10, T:0.24
Consensus pattern (21 bp):
AATACAATCCTTCAATGCAAG
Found at i:17099704 original size:22 final size:22
Alignment explanation
Indices: 17099670--17099712 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
17099660 GAGTTATGCA
17099670 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
17099692 ATAATAATGAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
17099713 AATAGTGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:17102027 original size:63 final size:63
Alignment explanation
Indices: 17101946--17102090 Score: 204
Period size: 63 Copynumber: 2.3 Consensus size: 63
17101936 CTCATACAGC
* * * *
17101946 CTGGACACATGCCTGTGTC-TTTGGCTCGTTTGACTTTAATGCACAAACAGTGAGTTACAC-AGT
1 CTGGACACATGCCCGTGTCTTTTGAC-CGTATGACTCTAATGCACAAACAGTGAGTTACACGA-T
*
17102009 TTGGACACATGCCCGTGTCTTTTGACCGTATGACTCTAATGCACAAACAGTGAGTTACACGAT
1 CTGGACACATGCCCGTGTCTTTTGACCGTATGACTCTAATGCACAAACAGTGAGTTACACGAT
*
17102072 CTGGATACATGCCCGTGTC
1 CTGGACACATGCCCGTGTC
17102091 CTTAGCCCAT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
63 67 0.92
64 6 0.08
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (63 bp):
CTGGACACATGCCCGTGTCTTTTGACCGTATGACTCTAATGCACAAACAGTGAGTTACACGAT
Found at i:17107253 original size:43 final size:42
Alignment explanation
Indices: 17107198--17107343 Score: 138
Period size: 43 Copynumber: 3.4 Consensus size: 42
17107188 TGCCAACGTC
*
17107198 CCAGACGTGGTCTTACA-TATAATCAAATATCGATGCCACTGT
1 CCAGACATGGTCTTACACTA-AATCAAATATCGATGCCACTGT
* * * * *
17107240 CTCAGACAAGGTCTTACACGAAATCATATA-CGATCCCAATGT
1 C-CAGACATGGTCTTACACTAAATCAAATATCGATGCCACTGT
*
17107282 CCTAGACATGGTCTTACACGTAAATCACAA-ATTGATGCCAAC-GT
1 CC-AGACATGGTCTTACAC-TAAATCA-AATATCGATGCC-ACTGT
17107326 CCCAGACATGGTCTTACA
1 -CCAGACATGGTCTTACA
17107344 TGATAACACA
Statistics
Matches: 84, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
41 1 0.01
42 27 0.32
43 29 0.35
44 24 0.29
45 3 0.04
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (42 bp):
CCAGACATGGTCTTACACTAAATCAAATATCGATGCCACTGT
Found at i:17126257 original size:12 final size:12
Alignment explanation
Indices: 17126240--17126270 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
17126230 GAATTAAAAG
17126240 AGTTGAAAGCTC
1 AGTTGAAAGCTC
17126252 AGTTGAAAGCTC
1 AGTTGAAAGCTC
17126264 AGCTTGA
1 AG-TTGA
17126271 TAGAGCTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (12 bp):
AGTTGAAAGCTC
Found at i:17126321 original size:23 final size:23
Alignment explanation
Indices: 17126270--17126328 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 23
17126260 GCTCAGCTTG
17126270 ATAGAGCTTACTGGTTCAGCTCA
1 ATAGAGCTTACTGGTTCAGCTCA
*
17126293 ATAGAGCTTACTGTTCATCAGCTCA
1 ATAGAGCTTACTGGT--TCAGCTCA
*
17126318 AGAGGAGCTTA
1 ATA-GAGCTTA
17126329 TTGATTATGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 14 0.45
25 10 0.32
26 7 0.23
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (23 bp):
ATAGAGCTTACTGGTTCAGCTCA
Found at i:17131188 original size:20 final size:20
Alignment explanation
Indices: 17131163--17131214 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
17131153 CGAGTTAGGG
17131163 ACACGGGCGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
17131183 ACACGGGCGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
17131203 ACACGGGCGTGT
1 ACACGGGCGTGT
17131215 GCATTGTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.12
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAAGC
Found at i:17132014 original size:30 final size:30
Alignment explanation
Indices: 17131979--17132035 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
17131969 TAAGTTTGGC
17131979 AAGTAAGTGATAA-TTGA-AAAGTTTATATTA
1 AAGTAAGTGA-AAGTTGATAAA-TTTATATTA
17132009 AAGTAAGTGAAAGTTGATAAATTTATA
1 AAGTAAGTGAAAGTTGATAAATTTATA
17132036 CATGATACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 2 0.08
30 20 0.80
31 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (30 bp):
AAGTAAGTGAAAGTTGATAAATTTATATTA
Found at i:17133654 original size:25 final size:25
Alignment explanation
Indices: 17133602--17133655 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
17133592 GCACTCTCTC
* * **
17133602 GAGCCATGTAACAGGATGCTTATGT
1 GAGCCATGTAACAGAAAGCTTACCT
*
17133627 GAGCCATGTACCAGAAAGCTTACCT
1 GAGCCATGTAACAGAAAGCTTACCT
17133652 GAGC
1 GAGC
17133656 TAAACATGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (25 bp):
GAGCCATGTAACAGAAAGCTTACCT
Found at i:17136066 original size:13 final size:13
Alignment explanation
Indices: 17136044--17136076 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
17136034 AAGGGTTTGT
17136044 TTAT-TAAACTAA
1 TTATCTAAACTAA
17136056 TTATCTAAACTAA
1 TTATCTAAACTAA
*
17136069 TTAACTAA
1 TTATCTAA
17136077 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:17138633 original size:53 final size:53
Alignment explanation
Indices: 17138508--17138689 Score: 161
Period size: 54 Copynumber: 3.4 Consensus size: 53
17138498 GCGTACCTGA
* * * * * *
17138508 ACCCTCATGTGATAAAATGA-AAGTTTT-ACCCTTATGTGATAAAATGATGATTTT
1 ACCCTTATATGATAAAATGACAA-TTTTGA-CCTCATATGATAAAATGA-CAATTT
** * *
17138562 ACCCTTATATGATAAAATGATGATTTTGCCCTCATATGATATAATGACAATTT
1 ACCCTTATATGATAAAATGACAATTTTGACCTCATATGATAAAATGACAATTT
* * **
17138615 ACCCTTATTTGATAAAATGACAATTTTGACCTTATATGATAAAATGACCAAAAT
1 ACCCTTATATGATAAAATGACAATTTTGACCTCATATGATAAAATGA-CAATTT
* * *
17138669 ACTCTCATAGGATAAAATGAC
1 ACCCTTATATGATAAAATGAC
17138690 CTAAATACCC
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
53 45 0.43
54 58 0.56
55 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (53 bp):
ACCCTTATATGATAAAATGACAATTTTGACCTCATATGATAAAATGACAATTT
Found at i:17138648 original size:80 final size:80
Alignment explanation
Indices: 17138509--17138661 Score: 220
Period size: 80 Copynumber: 1.9 Consensus size: 80
17138499 CGTACCTGAA
* **
17138509 CCCTCATGTGATAAAATGAAAGTTTTACCCTTATGTGATAAAATGATGATTTTACCCTTATATGA
1 CCCTCATATGATAAAATGAAAG-TTTACCCTTATGTGATAAAATGACAATTTTACCCTTATATGA
17138574 TAAAATGATGATTTTG
65 TAAAATGATGATTTTG
* *
17138590 CCCTCATATGATATAATGACAA-TTTACCCTTATTTGATAAAATGACAATTTTGA-CCTTATATG
1 CCCTCATATGATAAAATGA-AAGTTTACCCTTATGTGATAAAATGACAATTTT-ACCCTTATATG
17138653 ATAAAATGA
64 ATAAAATGA
17138662 CCAAAATACT
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
80 45 0.69
81 18 0.28
82 2 0.03
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (80 bp):
CCCTCATATGATAAAATGAAAGTTTACCCTTATGTGATAAAATGACAATTTTACCCTTATATGAT
AAAATGATGATTTTG
Found at i:17138662 original size:27 final size:27
Alignment explanation
Indices: 17138508--17138662 Score: 172
Period size: 27 Copynumber: 5.8 Consensus size: 27
17138498 GCGTACCTGA
* *
17138508 ACCCTCATGTGATAAAATGA-AAGTTTT
1 ACCCTTATATGATAAAATGACAA-TTTT
* **
17138535 ACCCTTATGTGATAAAATGATGATTTT
1 ACCCTTATATGATAAAATGACAATTTT
**
17138562 ACCCTTATATGATAAAATGATGATTTT
1 ACCCTTATATGATAAAATGACAATTTT
* * *
17138589 GCCCTCATATGATATAATGACAA-TTT
1 ACCCTTATATGATAAAATGACAATTTT
*
17138615 ACCCTTATTTGATAAAATGACAATTTT
1 ACCCTTATATGATAAAATGACAATTTT
17138642 GA-CCTTATATGATAAAATGAC
1 -ACCCTTATATGATAAAATGAC
17138663 CAAAATACTC
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 22 0.20
27 88 0.79
28 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (27 bp):
ACCCTTATATGATAAAATGACAATTTT
Found at i:17138676 original size:80 final size:80
Alignment explanation
Indices: 17138508--17138689 Score: 199
Period size: 80 Copynumber: 2.3 Consensus size: 80
17138498 GCGTACCTGA
**
17138508 ACCCTCAT-GTGATAAAATGA-AAGTTTTACCCTTATGTGATAAAATGATGATTTTACCCTTATA
1 ACCCTCATAG-GATAAAATGACAA--TTTACCCTTATGTGATAAAATGACAATTTTACCCTTATA
** ***
17138571 TGATAAAATGATGATTTT
63 TGATAAAATGACCAAAAT
* * * *
17138589 GCCCTCATATGATATAATGACAATTTACCCTTATTTGATAAAATGACAATTTTGA-CCTTATATG
1 ACCCTCATAGGATAAAATGACAATTTACCCTTATGTGATAAAATGACAATTTT-ACCCTTATATG
17138653 ATAAAATGACCAAAAT
65 ATAAAATGACCAAAAT
*
17138669 ACTCTCATAGGATAAAATGAC
1 ACCCTCATAGGATAAAATGAC
17138690 CTAAATACCC
Statistics
Matches: 83, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
80 64 0.77
81 17 0.20
82 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (80 bp):
ACCCTCATAGGATAAAATGACAATTTACCCTTATGTGATAAAATGACAATTTTACCCTTATATGA
TAAAATGACCAAAAT
Found at i:17138682 original size:27 final size:26
Alignment explanation
Indices: 17138652--17138743 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 26
17138642 GACCTTATAT
*
17138652 GATAAAATGACCAAAATACTCTCATAG
1 GATAAAATGACCAAAATAC-CCCATAG
*
17138679 GATAAAATGACCTAAATACCCCCATAG
1 GATAAAATGACCAAAATA-CCCCATAG
* * *
17138706 GGTAGAATGACCGAAATACCCCTATAG
1 GATAAAATGACCAAAATACCCC-ATAG
*
17138733 GGTAAAATGAC
1 GATAAAATGAC
17138744 TGTAATACCT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.07
27 52 0.91
28 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (26 bp):
GATAAAATGACCAAAATACCCCATAG
Found at i:17145659 original size:43 final size:43
Alignment explanation
Indices: 17145499--17145657 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
17145489 GGTTATCGAG
* *
17145499 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
1 TTGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTA
* ** * *
17145542 TTGAGATTATGTGTAAGACCATGTCTGGGACATTGGTATCGTA
1 TTGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTA
* * * * * *
17145585 TTATGATTTCGTGTAAGACCCTATCTGGGATAGTGGCATCG-A
1 TTGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTA
*
17145627 TATGTGATAACATGTAAGACCATATCTGGGA
1 T-TGTGATTACATGTAAGACCATATCTGGGA
17145658 TATGACATTG
Statistics
Matches: 96, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 2 0.02
43 94 0.98
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (43 bp):
TTGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTA
Found at i:17147311 original size:24 final size:24
Alignment explanation
Indices: 17147278--17147334 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
17147268 TCAAAATCTC
17147278 AAAATTAAATGAAAAA-AAGTAATAT
1 AAAA-TAAATGAAAAATAAGTAA-AT
* *
17147303 AAAATAAATTAAAAATAATTAAAT
1 AAAATAAATGAAAAATAAGTAAAT
17147327 AAAATAAA
1 AAAATAAA
17147335 ATAAGATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 20 0.69
25 9 0.31
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (24 bp):
AAAATAAATGAAAAATAAGTAAAT
Found at i:17150799 original size:15 final size:15
Alignment explanation
Indices: 17150748--17150815 Score: 50
Period size: 15 Copynumber: 4.4 Consensus size: 15
17150738 TACGGTATCG
17150748 CATCTTGGATTTCTT
1 CATCTTGGATTTCTT
* *
17150763 TATTTTGGAATTT-TT
1 CATCTTGG-ATTTCTT
17150778 CGA-CTTGGATTTCTT
1 C-ATCTTGGATTTCTT
* *
17150793 CCTCTTGGTTTTCATGT
1 CATCTTGGATTTC-T-T
17150810 CATCTT
1 CATCTT
17150816 TATTTCATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
14 4 0.10
15 24 0.60
16 6 0.15
17 6 0.15
ACGTcount: A:0.13, C:0.18, G:0.15, T:0.54
Consensus pattern (15 bp):
CATCTTGGATTTCTT
Found at i:17153471 original size:48 final size:48
Alignment explanation
Indices: 17153401--17153566 Score: 226
Period size: 48 Copynumber: 3.5 Consensus size: 48
17153391 TAGGGTTATG
*
17153401 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATTA
** * * * * * *
17153449 TAAGAGCTAGTGTAAGATCATGTTTGGGACATGGCATCAGC-TCAATA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATTA
* *
17153496 TGTGAGCCAGTGTAAGATCATGTTTGGAACATGGCATCGACATTATTA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATTA
17153544 TGTGAGCCAGTGTAAGACCATGT
1 TGTGAGCCAGTGTAAGACCATGT
17153567 CTGGTTCAAC
Statistics
Matches: 99, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 38 0.38
48 61 0.62
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATTA
Found at i:17157728 original size:26 final size:26
Alignment explanation
Indices: 17157699--17157748 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17157689 AGGTCGAAGC
17157699 TGTCAAACAGCAGAATAGGGTTAAGT
1 TGTCAAACAGCAGAATAGGGTTAAGT
17157725 TGTCAAACAGCAGAATAGGGTTAA
1 TGTCAAACAGCAGAATAGGGTTAA
17157749 CTTTAAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22
Consensus pattern (26 bp):
TGTCAAACAGCAGAATAGGGTTAAGT
Found at i:17158888 original size:40 final size:40
Alignment explanation
Indices: 17158810--17159018 Score: 199
Period size: 40 Copynumber: 5.2 Consensus size: 40
17158800 CAGGTTTTTC
* * *
17158810 GCGGCGTTTTTGGTAACAAACGCCGCTATAAATCGAGCATTA
1 GCGGCGTTTTTAG-AA-AAGCGCCGCTATAGATCGAGCATTA
* * * *
17158852 GCGGCATTTTTATAAAAGCGCCACTATAGATTGAGCATTA
1 GCGGCGTTTTTAGAAAAGCGCCGCTATAGATCGAGCATTA
* * **
17158892 ACGGCGTTTTTAGAAAAGCGCTGCTATAGATCGATAATTA
1 GCGGCGTTTTTAGAAAAGCGCCGCTATAGATCGAGCATTA
* * *
17158932 GCGGCGCTTTTTGGAAAA-CGCCACTATAGATCGAGCTTTA
1 GCGGCG-TTTTTAGAAAAGCGCCGCTATAGATCGAGCATTA
** * *
17158972 GCTACGTTTTTTA-AAAAACGCCGCCATAGAT-GAGCATTA
1 GCGGCG-TTTTTAGAAAAGCGCCGCTATAGATCGAGCATTA
17159011 GCGGCGTT
1 GCGGCGTT
17159019 AAAAAATGCC
Statistics
Matches: 134, Mismatches: 31, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
38 2 0.01
39 15 0.11
40 95 0.71
41 12 0.09
42 10 0.07
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (40 bp):
GCGGCGTTTTTAGAAAAGCGCCGCTATAGATCGAGCATTA
Found at i:17159149 original size:40 final size:40
Alignment explanation
Indices: 17159089--17159181 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 40
17159079 TTAGCGGCGC
* * * * * *
17159089 TTTTTGGAAAACGCCGCTATATATTGAGCTTTAGC-AGCAT
1 TTTTTGAAAAACGACACTATAGATCGAGCATTAGCGA-CAT
*
17159129 TTTTTGAAAAACGACACTATAGATCGAGCATTAGCGACGT
1 TTTTTGAAAAACGACACTATAGATCGAGCATTAGCGACAT
*
17159169 TTTTTAAAAAACG
1 TTTTTGAAAAACG
17159182 TCACAAATTA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 43 0.98
41 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (40 bp):
TTTTTGAAAAACGACACTATAGATCGAGCATTAGCGACAT
Found at i:17159262 original size:154 final size:150
Alignment explanation
Indices: 17158928--17159272 Score: 417
Period size: 150 Copynumber: 2.3 Consensus size: 150
17158918 TAGATCGATA
* * * *
17158928 ATTAGCGGCGCTTTTTGGAAAACGCCACTATAGATCGAGCTTTAGCTACGTTTTTTAAAAAACGC
1 ATTAGCGGCGCTTTTTGGAAAACGCCGCTATAGATTGAGCTTTAGCTACATTTTTTAAAAAACGA
* * * * * *
17158993 CGCCATAGATGAGCATTAGCGGCGTTAAAAAATGCCGCAAATTATTTCATCAACACGCTGTCGTT
66 CACCATAGATGAGCATTAGCGACGTTAAAAAACGCCACAAATTAATTCATCAACACGCCGTCGTT
17159058 TTTTGTTGAGCCTTAGTGGC
131 TTTTGTTGAGCCTTAGTGGC
* *
17159078 ATTAGCGGCGCTTTTTGGAAAACGCCGCTATATATTGAGCTTTAGC-AGCATTTTTTGAAAAACG
1 ATTAGCGGCGCTTTTTGGAAAACGCCGCTATAGATTGAGCTTTAGCTA-CATTTTTTAAAAAACG
* * *
17159142 ACACTATAGATCGAGCATTAGCGACGTTTTTTAAAAAACGTCACAAATTAATTCATTAACACGCC
65 ACACCATAGAT-GAGCATTAGCGACG----TTAAAAAACGCCACAAATTAATTCATCAACACGCC
*
17159207 GTC-TTTTATT-TTTAGCCTTAGTGGC
125 GTCGTTTT-TTGTTGAGCCTTAGTGGC
** * **
17159232 ATTAGCGGCGCTTTTTAAAAAATGTTGCTATAGATTGAGCT
1 ATTAGCGGCGCTTTTTGGAAAACGCCGCTATAGATTGAGCT
17159273 ATTGCGGCGC
Statistics
Matches: 166, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
149 1 0.01
150 65 0.39
151 13 0.08
154 53 0.32
155 34 0.20
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (150 bp):
ATTAGCGGCGCTTTTTGGAAAACGCCGCTATAGATTGAGCTTTAGCTACATTTTTTAAAAAACGA
CACCATAGATGAGCATTAGCGACGTTAAAAAACGCCACAAATTAATTCATCAACACGCCGTCGTT
TTTTGTTGAGCCTTAGTGGC
Found at i:17159687 original size:22 final size:22
Alignment explanation
Indices: 17159662--17159798 Score: 68
Period size: 22 Copynumber: 6.3 Consensus size: 22
17159652 GAGTTAATAT
17159662 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGGATTATGGG
* * * *
17159684 TTTAGGGTTTAAGGGTT-GGGG
1 TTTAAGGTTTATGGATTATGGG
* *
17159705 TTTAAGATTTATGGGTTTAT-GG
1 TTTAAGGTTTAT-GGATTATGGG
* * * *
17159727 TTTATGAGTTAAT--ATTTTAAGG
1 TTTAAG-GTTTATGGATTAT-GGG
* * *
17159749 TTTATGGATTATGAATTATGGG
1 TTTAAGGTTTATGGATTATGGG
* * *
17159771 TTTAGGGATTATGGTTTAT-GG
1 TTTAAGGTTTATGGATTATGGG
17159792 TTTAAGG
1 TTTAAGG
17159799 GTTGAGTTTA
Statistics
Matches: 86, Mismatches: 22, Indels: 15
0.70 0.18 0.12
Matches are distributed among these distances:
20 3 0.03
21 24 0.28
22 51 0.59
23 8 0.09
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (22 bp):
TTTAAGGTTTATGGATTATGGG
Found at i:17159694 original size:29 final size:29
Alignment explanation
Indices: 17159662--17159801 Score: 88
Period size: 29 Copynumber: 4.8 Consensus size: 29
17159652 GAGTTAATAT
*
17159662 TTTAAGGTTTATGGATTATGGGTTTAGGG
1 TTTATGGTTTATGGATTATGGGTTTAGGG
* * ** * * *
17159691 TTTAAGGGTTGGGGTTTA-AGATTTATGGG
1 TTTATGGTTTATGGATTATGGGTTTA-GGG
** *
17159720 TTTATGGTTTAT-GAGTTAAT-ATTTTAAGG
1 TTTATGGTTTATGGA-TT-ATGGGTTTAGGG
* *
17159749 TTTATGGATTATGAATTATGGGTTTAGGG
1 TTTATGGTTTATGGATTATGGGTTTAGGG
* * *
17159778 ATTATGGTTTATGGTTTAAGGGTT
1 TTTATGGTTTATGGATTATGGGTT
17159802 GAGTTTAGGG
Statistics
Matches: 81, Mismatches: 24, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
28 8 0.10
29 67 0.83
30 6 0.07
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (29 bp):
TTTATGGTTTATGGATTATGGGTTTAGGG
Found at i:17159699 original size:15 final size:14
Alignment explanation
Indices: 17159662--17159853 Score: 66
Period size: 14 Copynumber: 13.4 Consensus size: 14
17159652 GAGTTAATAT
*
17159662 TTTAAGGTTTATGG
1 TTTAAGGTTTAGGG
* *
17159676 ATTATGGGTTTAGGG
1 TTTA-AGGTTTAGGG
* *
17159691 TTTAAGGGTTGGGG
1 TTTAAGGTTTAGGG
*
17159705 TTTAAGATTTATGGG
1 TTTAAGGTTTA-GGG
* *
17159720 TTTATGGTTTATGAG
1 TTTAAGGTTTA-GGG
** *
17159735 -TTAATATTTTAAGG
1 TTTAA-GGTTTAGGG
* * * *
17159749 TTTATGGATTATGA
1 TTTAAGGTTTAGGG
* *
17159763 ATTATGGGTTTAGGG
1 TTTA-AGGTTTAGGG
* * *
17159778 ATTATGGTTTATGG
1 TTTAAGGTTTAGGG
* *
17159792 TTTAAGGGTT-GAG
1 TTTAAGGTTTAGGG
*
17159805 TTTAGGGGTTTAGGG
1 TTTA-AGGTTTAGGG
*
17159820 TTT-AGGAATTTATGG
1 TTTAAGG--TTTAGGG
*
17159835 TTTAAGATTTAGGG
1 TTTAAGGTTTAGGG
17159849 TTTAA
1 TTTAA
17159854 AAGTTAAAAT
Statistics
Matches: 125, Mismatches: 43, Indels: 20
0.66 0.23 0.11
Matches are distributed among these distances:
13 7 0.06
14 59 0.47
15 57 0.46
16 2 0.02
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.45
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:17159731 original size:7 final size:7
Alignment explanation
Indices: 17159599--17159795 Score: 81
Period size: 7 Copynumber: 27.4 Consensus size: 7
17159589 TTAATTATCA
*
17159599 TTATAGT
1 TTATGGT
*
17159606 TTAAGGT
1 TTATGGT
*
17159613 TTAGGGT
1 TTATGGT
*
17159620 ATATGGT
1 TTATGGT
*
17159627 ATATGGT
1 TTATGGT
* *
17159634 ATAGGGT
1 TTATGGT
17159641 TTATGAG-
1 TTATG-GT
17159648 TTATGAGT
1 TTATG-GT
* **
17159656 TAATATT
1 TTATGGT
*
17159663 TTAAGGT
1 TTATGGT
*
17159670 TTATGGA
1 TTATGGT
17159677 TTATGGGT
1 TTAT-GGT
*
17159685 TTAGGGT
1 TTATGGT
* *
17159692 TTAAGGG
1 TTATGGT
**
17159699 TTGGGGT
1 TTATGGT
* *
17159706 TTAAGAT
1 TTATGGT
17159713 TTATGGGT
1 TTAT-GGT
17159721 TTATGGT
1 TTATGGT
17159728 TTATGAGT
1 TTATG-GT
* **
17159736 TAATATT
1 TTATGGT
*
17159743 TTAAGGT
1 TTATGGT
*
17159750 TTATGGA
1 TTATGGT
**
17159757 TTATGAA
1 TTATGGT
17159764 TTATGGGT
1 TTAT-GGT
* *
17159772 TTAGGGA
1 TTATGGT
17159779 TTATGGT
1 TTATGGT
17159786 TTATGGT
1 TTATGGT
17159793 TTA
1 TTA
17159796 AGGGTTGAGT
Statistics
Matches: 139, Mismatches: 45, Indels: 12
0.71 0.23 0.06
Matches are distributed among these distances:
7 115 0.83
8 24 0.17
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (7 bp):
TTATGGT
Found at i:17159801 original size:80 final size:79
Alignment explanation
Indices: 17159605--17159801 Score: 238
Period size: 80 Copynumber: 2.5 Consensus size: 79
17159595 ATCATTATAG
* * *
17159605 TTTAAGGTTTAGGGTATATGGTATATGGTAT-AGGGTTTATGAGTTATGAGTTAATATTTTAAGG
1 TTTAGGGTTTAGGGT-TATGGTTTATGGTTTAAGGGTTTATGAGTTATGAGTTAATATTTTAAGG
**
17159669 TTTATGGATTATGGG
65 TTTATGGATTATGAA
** * * *
17159684 TTTAGGGTTTAAGGGTTGGGGTTTAAGATTTATGGGTTTATG-GTTTATGAGTTAATATTTTAAG
1 TTTAGGGTTT-AGGGTTATGGTTTATGGTTTAAGGGTTTATGAG-TTATGAGTTAATATTTTAAG
17159748 GTTTATGGATTATGAA
64 GTTTATGGATTATGAA
17159764 -TTATGGGTTTAGGGATTATGGTTTATGGTTTAAGGGTT
1 TTTA-GGGTTTAGGG-TTATGGTTTATGGTTTAAGGGTT
17159802 GAGTTTAGGG
Statistics
Matches: 98, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
79 26 0.27
80 72 0.73
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (79 bp):
TTTAGGGTTTAGGGTTATGGTTTATGGTTTAAGGGTTTATGAGTTATGAGTTAATATTTTAAGGT
TTATGGATTATGAA
Found at i:17159822 original size:7 final size:7
Alignment explanation
Indices: 17159768--17159852 Score: 57
Period size: 7 Copynumber: 12.0 Consensus size: 7
17159758 TATGAATTAT
17159768 GGGTTTA
1 GGGTTTA
*
17159775 GGGATTA
1 GGGTTTA
*
17159782 TGGTTTA
1 GGGTTTA
*
17159789 TGGTTTAA
1 GGGTTT-A
17159797 GGG-TT-
1 GGGTTTA
*
17159802 GAGTTTA
1 GGGTTTA
17159809 GGGGTTTA
1 -GGGTTTA
17159817 GGGTTTA
1 GGGTTTA
*
17159824 GGAATTTA
1 GG-GTTTA
*
17159832 TGGTTTA
1 GGGTTTA
* *
17159839 AGATTTA
1 GGGTTTA
17159846 GGGTTTA
1 GGGTTTA
17159853 AAAGTTAAAA
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
5 2 0.03
6 2 0.03
7 42 0.70
8 14 0.23
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44
Consensus pattern (7 bp):
GGGTTTA
Found at i:17160326 original size:22 final size:22
Alignment explanation
Indices: 17160263--17160326 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
17160253 AACTGATTGT
*
17160263 TTTTTAATTTATATTGTTTTTAA
1 TTTTTAATTTATATT-ATTTTAA
* * *
17160286 TTTTTAAATTAAATAATTTTAA
1 TTTTTAATTTATATTATTTTAA
17160308 TTTTTAATTTATATTATTT
1 TTTTTAATTTATATTATTT
17160327 AATCATTTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
22 22 0.65
23 12 0.35
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (22 bp):
TTTTTAATTTATATTATTTTAA
Found at i:17160841 original size:6 final size:6
Alignment explanation
Indices: 17160832--17160861 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
17160822 CCATTCACAT
*
17160832 TCCCAC TCCCAC TCTCAC TCCCAC TCCCAC
1 TCCCAC TCCCAC TCCCAC TCCCAC TCCCAC
17160862 ATACTCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.17, C:0.63, G:0.00, T:0.20
Consensus pattern (6 bp):
TCCCAC
Found at i:17164123 original size:19 final size:19
Alignment explanation
Indices: 17164069--17164123 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
17164059 ATTTAATCTA
17164069 ATTTTTATTATT--TATTTT
1 ATTTTTATT-TTAATATTTT
* *
17164087 AGTTTTGATTCTAA-ATTTT
1 A-TTTTTATTTTAATATTTT
17164106 ATTTTTATTTTAATATTT
1 ATTTTTATTTTAATATTT
17164124 AAGATAACTT
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
18 12 0.41
19 17 0.59
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (19 bp):
ATTTTTATTTTAATATTTT
Found at i:17164427 original size:43 final size:43
Alignment explanation
Indices: 17164379--17164599 Score: 284
Period size: 43 Copynumber: 5.2 Consensus size: 43
17164369 GGTTATAATT
* *
17164379 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTC
* * *
17164422 TTTAGCGGCGTTTGTGGGAAAAGTGCCACTAAAGGTC-TATTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTC
* * *
17164464 TTTAGCGGCGTTTGTGGGAAAAGCGCTGTTAAAGGCCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTC
**
17164507 TTTAGTTGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTC
* * * *
17164550 TTTAGTGGCGTTTGTGGTAAAAG-GATCGCTAAAGGCCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCG-CCGCTAAAGGTCATGTTC
*
17164593 TATAGCG
1 TTTAGCG
17164600 AAATTTTTTT
Statistics
Matches: 154, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
42 37 0.24
43 117 0.76
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:17164522 original size:85 final size:86
Alignment explanation
Indices: 17164365--17164599 Score: 296
Period size: 85 Copynumber: 2.7 Consensus size: 86
17164355 AATATTCTTT
* * * **
17164365 TAAAGGTTATAATT-TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGATCATGTTCTTTAGCG
1 TAAAGGTCAT-ATTCTTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGCCATGTTCTTTAGCG
*
17164429 GCGTTTGTGGGAAAAGTGCCAC
65 GCGTTTGTGGGAAAAGCGCCAC
* **
17164451 TAAAGGTC-TATTCTTTAGCGGCGTTTGTGGGAAAAGCGCTGTTAAAGGCCATGTTCTTTAGTTG
1 TAAAGGTCATATTCTTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGCCATGTTCTTTAGCGG
*
17164515 CGTTTGTGGGAAAAGCGCCGC
66 CGTTTGTGGGAAAAGCGCCAC
* * * * *
17164536 TAAAGGTCATGTTCTTTAGTGGCGTTTGTGGTAAAAG-GATCGCTAAAGGCCATGTTCTATAGCG
1 TAAAGGTCATATTCTTTAGCGGCGTTTGTGGGAAAAGCGCT-GCTAAAGGCCATGTTCTTTAGCG
17164600 AAATTTTTTT
Statistics
Matches: 128, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
84 3 0.02
85 74 0.58
86 51 0.40
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.31
Consensus pattern (86 bp):
TAAAGGTCATATTCTTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGCCATGTTCTTTAGCGG
CGTTTGTGGGAAAAGCGCCAC
Found at i:17164653 original size:15 final size:15
Alignment explanation
Indices: 17164629--17164681 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
17164619 TCGCAAAATG
*
17164629 TTAGCAGCGTTGTTT
1 TTAGCGGCGTTGTTT
**
17164644 TTAGCGGCGTTGCCT
1 TTAGCGGCGTTGTTT
*
17164659 TTAGCGGCATT-TTT
1 TTAGCGGCGTTGTTT
*
17164673 TTTGCGGCG
1 TTAGCGGCG
17164682 CCGCTATAGG
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
14 8 0.27
15 22 0.73
ACGTcount: A:0.09, C:0.19, G:0.30, T:0.42
Consensus pattern (15 bp):
TTAGCGGCGTTGTTT
Found at i:17168212 original size:39 final size:40
Alignment explanation
Indices: 17168167--17168391 Score: 215
Period size: 40 Copynumber: 5.7 Consensus size: 40
17168157 GCTCCTCGTT
* * * * *
17168167 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
17168207 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
17168246 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * * *
17168286 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCA
** * * * *
17168326 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
17168367 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
17168392 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 37 0.24
40 104 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:17168400 original size:41 final size:41
Alignment explanation
Indices: 17168323--17168400 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
17168313 CTTGTATCTC
* * *
17168323 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
17168364 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
17168401 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:17174394 original size:18 final size:17
Alignment explanation
Indices: 17174353--17174436 Score: 71
Period size: 17 Copynumber: 4.8 Consensus size: 17
17174343 TTTCTTCCCC
* *
17174353 CTTTCTTCTTCTTTATTT
1 CTTTTTTCTT-TTTTTTT
17174371 CATTTTTTCTCTTTTTTTT
1 C-TTTTTTCT-TTTTTTTT
17174390 C-TTTTTCTTTTTTTTT
1 CTTTTTTCTTTTTTTTT
* * *
17174406 GTTTCTTTGTTTTTTATT
1 CTTT-TTTCTTTTTTTTT
*
17174424 CTTCTTTCTTTTT
1 CTTTTTTCTTTTT
17174437 CTATTTTCTT
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
16 8 0.15
17 17 0.31
18 14 0.26
19 14 0.26
20 1 0.02
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.79
Consensus pattern (17 bp):
CTTTTTTCTTTTTTTTT
Found at i:17174396 original size:17 final size:16
Alignment explanation
Indices: 17174374--17174457 Score: 73
Period size: 17 Copynumber: 5.2 Consensus size: 16
17174364 TTTATTTCAT
17174374 TTTTTCTCTTTTTTTTC
1 TTTTTCT-TTTTTTTTC
17174391 TTTTTC-TTTTTTTT-
1 TTTTTCTTTTTTTTTC
* *
17174405 TGTTTCTTTGTTTTTTA
1 TTTTTCTTT-TTTTTTC
* *
17174422 TTCTTCTTTCTTTTTC
1 TTTTTCTTTTTTTTTC
* *
17174438 TATTTTCTTTCTTTTCC
1 T-TTTTCTTTTTTTTTC
17174455 TTT
1 TTT
17174458 CCCTTCCTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
14 5 0.09
15 10 0.18
16 14 0.25
17 27 0.48
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTC
Found at i:17174400 original size:13 final size:13
Alignment explanation
Indices: 17174384--17174447 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 13
17174374 TTTTTCTCTT
17174384 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
*
17174397 TTTTTTTTTGTTTC
1 TTTTTTCTT-TTTC
17174411 TTTGTTT-TTTATTC
1 TTT-TTTCTTT-TTC
*
17174425 TTCTTTCTTTTTC
1 TTTTTTCTTTTTC
*
17174438 TATTTTCTTT
1 TTTTTTCTTT
17174448 CTTTTCCTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
13 23 0.53
14 17 0.40
15 3 0.07
ACGTcount: A:0.03, C:0.12, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:17174445 original size:34 final size:33
Alignment explanation
Indices: 17174380--17174452 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 33
17174370 TCATTTTTTC
* *
17174380 TCTTTTTTTTCTTTTTCTTTTTTTTTGTTTCTT
1 TCTTTTTTTTCTTTTTCTTTTTCTATGTTTCTT
*
17174413 TGTTTTTTATTCTTCTTTCTTTTTCTAT-TTTCTT
1 TCTTTTTT-TTCTT-TTTCTTTTTCTATGTTTCTT
17174447 TCTTTT
1 TCTTTT
17174453 CCTTTCCCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 7 0.21
34 16 0.47
35 11 0.32
ACGTcount: A:0.03, C:0.14, G:0.03, T:0.81
Consensus pattern (33 bp):
TCTTTTTTTTCTTTTTCTTTTTCTATGTTTCTT
Found at i:17181559 original size:44 final size:44
Alignment explanation
Indices: 17181509--17181597 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
17181499 CAATAACATG
*
17181509 TGTCACATATATCATGAACTCATACCACAACTCATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
*
17181553 TGTCACATATATCATGAACTCAGACCATAACTCATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
17181597 T
1 T
17181598 CACATAGTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (44 bp):
TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
Found at i:17181575 original size:24 final size:24
Alignment explanation
Indices: 17181509--17181576 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 24
17181499 CAATAACATG
17181509 TGTCACATATATCATGAACTC--A
1 TGTCACATATATCATGAACTCAGA
** * **
17181531 TACCACA-A-CTCATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGA
17181553 TGTCACATATATCATGAACTCAGA
1 TGTCACATATATCATGAACTCAGA
17181577 CCATAACTCA
Statistics
Matches: 32, Mismatches: 10, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
20 8 0.25
21 1 0.03
22 11 0.34
23 1 0.03
24 11 0.34
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.28
Consensus pattern (24 bp):
TGTCACATATATCATGAACTCAGA
Found at i:17181595 original size:20 final size:20
Alignment explanation
Indices: 17181532--17181596 Score: 51
Period size: 20 Copynumber: 3.0 Consensus size: 20
17181522 ATGAACTCAT
*
17181532 ACCACAACTCATGAGTTCAG
1 ACCATAACTCATGAGTTCAG
**
17181552 ATGTCACATATA-TCATGAACTCAG
1 A---C-CATA-ACTCATGAGTTCAG
17181576 ACCATAACTCATGAGTTCAG
1 ACCATAACTCATGAGTTCAG
17181596 A
1 A
17181597 TCACATAGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 12
0.67 0.10 0.24
Matches are distributed among these distances:
19 1 0.03
20 16 0.47
21 1 0.03
23 1 0.03
24 14 0.41
25 1 0.03
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.25
Consensus pattern (20 bp):
ACCATAACTCATGAGTTCAG
Found at i:17183862 original size:21 final size:20
Alignment explanation
Indices: 17183830--17183868 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
17183820 ATTTAGCTCA
17183830 ATTTAATACAATTCATATTC
1 ATTTAATACAATTCATATTC
*
17183850 ATTTCAATCCAATTCATAT
1 ATTT-AATACAATTCATAT
17183869 CTTAGGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTTAATACAATTCATATTC
Found at i:17184050 original size:19 final size:20
Alignment explanation
Indices: 17184009--17184052 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
17183999 AGCTCATGTA
*
17184009 TTTCATAAAATTTAGAATTT
1 TTTCATAAAATTTAGAATCT
* *
17184029 TTTCATAAATTTTA-CATCT
1 TTTCATAAAATTTAGAATCT
17184048 TTTCA
1 TTTCA
17184053 ATTTAGTCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.52
Consensus pattern (20 bp):
TTTCATAAAATTTAGAATCT
Found at i:17189831 original size:38 final size:39
Alignment explanation
Indices: 17189780--17189857 Score: 149
Period size: 38 Copynumber: 2.0 Consensus size: 39
17189770 CAATGAAGGA
17189780 TCATAAAATAGCCAGATTTAGTAATATAAAAATTG-CAC
1 TCATAAAATAGCCAGATTTAGTAATATAAAAATTGACAC
17189818 TCATAAAATAGCCAGATTTAGTAATATAAAAATTGACAC
1 TCATAAAATAGCCAGATTTAGTAATATAAAAATTGACAC
17189857 T
1 T
17189858 TACTTTTGTC
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
38 35 0.90
39 4 0.10
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.29
Consensus pattern (39 bp):
TCATAAAATAGCCAGATTTAGTAATATAAAAATTGACAC
Found at i:17195792 original size:32 final size:32
Alignment explanation
Indices: 17195753--17195817 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
17195743 TACCCAAAGA
17195753 TAGTTTTCTAGAATTTCTTAAAGATTTAATCT
1 TAGTTTTCTAGAATTTCTTAAAGATTTAATCT
17195785 TAGTTTTCTAGAATTTCTTAAAGATTTAATCT
1 TAGTTTTCTAGAATTTCTTAAAGATTTAATCT
17195817 T
1 T
17195818 TTTTTTGTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (32 bp):
TAGTTTTCTAGAATTTCTTAAAGATTTAATCT
Found at i:17196360 original size:20 final size:20
Alignment explanation
Indices: 17196337--17196400 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 20
17196327 ATCATTTTAA
17196337 TATTAAATTTAATAGTAATT
1 TATTAAATTTAATAGTAATT
* *
17196357 TATTAAATTTGATAGTATTT
1 TATTAAATTTAATAGTAATT
*
17196377 TATT-AATTTAATATTAAATT
1 TATTAAATTTAATAGT-AATT
17196397 TATT
1 TATT
17196401 TAAAATAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
19 9 0.24
20 29 0.76
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TATTAAATTTAATAGTAATT
Found at i:17196502 original size:33 final size:33
Alignment explanation
Indices: 17196460--17196526 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
17196450 ACAGAGAGTG
17196460 TGATTCTTCCACTACTCAACTGCCGAAAAACCA
1 TGATTCTTCCACTACTCAACTGCCGAAAAACCA
* *
17196493 TGATTCTTCCACTGCTCAACTGTCGAAAAACCA
1 TGATTCTTCCACTACTCAACTGCCGAAAAACCA
17196526 T
1 T
17196527 TACCGTCAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.27
Consensus pattern (33 bp):
TGATTCTTCCACTACTCAACTGCCGAAAAACCA
Found at i:17199687 original size:30 final size:30
Alignment explanation
Indices: 17199648--17199716 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
17199638 CATGTCCTGA
*
17199648 GGCTATGTCCTTCACACGGCTGAGACACAC
1 GGCTGTGTCCTTCACACGGCTGAGACACAC
17199678 GGCTGTGTCCTTCACACGGCTGAGACACAC
1 GGCTGTGTCCTTCACACGGCTGAGACACAC
*
17199708 GGCCGTGTC
1 GGCTGTGTC
17199717 TCTGCCCGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (30 bp):
GGCTGTGTCCTTCACACGGCTGAGACACAC
Found at i:17200842 original size:48 final size:48
Alignment explanation
Indices: 17200785--17201012 Score: 198
Period size: 48 Copynumber: 4.9 Consensus size: 48
17200775 CACATGGCAA
* *
17200785 GATGCCAATGCCATATCCCGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATC
* * ** *
17200833 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATC
* **
17200881 GATGCCAATGTCATGTCCCAGACT-TGGTCTTACATGATATCACATATC
1 GATGCCAATGCCATGTCCCAGA-TATGGTCTTACATGGGATCACATATC
* * * * * ** * *
17200929 GATGTCGAT---A-G-CCCAGCTATGGTCTTATACGAAATTACATATT
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATC
* * * *
17200972 GATGCCAAAGCCATGTCTCAGACATGGTCTTAAATGGGATC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATC
17201013 GCACATAACC
Statistics
Matches: 139, Mismatches: 34, Indels: 14
0.74 0.18 0.07
Matches are distributed among these distances:
42 1 0.01
43 30 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 104 0.75
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATC
Found at i:17203392 original size:93 final size:93
Alignment explanation
Indices: 17203231--17203411 Score: 317
Period size: 93 Copynumber: 1.9 Consensus size: 93
17203221 GTGAGTTGGC
* **
17203231 TTTGTCAATCGATCTACAACAACCCATACATCATCTTTCTTTCTTGGTGTCAAAGGCAAACCCAT
1 TTTGTCAATCGATCTACAACAACCCATACAGCATCTTTCTTTCTCAGTGTCAAAGGCAAACCCAT
17203296 CACAAAATCCATAGTAATATGGTTCGAA
66 CACAAAATCCATAGTAATATGGTTCGAA
*
17203324 TTTGTCAATCGATCTACAACAACCCATACAGCATCTTTCTTTCTCAGTGTCAAAGGCAAACCCGT
1 TTTGTCAATCGATCTACAACAACCCATACAGCATCTTTCTTTCTCAGTGTCAAAGGCAAACCCAT
*
17203389 CACAAAATCCATAGTTATATGGT
66 CACAAAATCCATAGTAATATGGT
17203412 CCCATTTCCA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 83 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (93 bp):
TTTGTCAATCGATCTACAACAACCCATACAGCATCTTTCTTTCTCAGTGTCAAAGGCAAACCCAT
CACAAAATCCATAGTAATATGGTTCGAA
Found at i:17208798 original size:48 final size:48
Alignment explanation
Indices: 17208723--17208950 Score: 209
Period size: 48 Copynumber: 4.9 Consensus size: 48
17208713 CACATGGTAG
* *
17208723 GATGCCAATGCCATATCCTC-GATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCC-CAGACATGGTCTTACATGGGATCACATATC
* ** *
17208771 GTTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * *
17208819 GATGCCAATGTCATGTCCCAGACTTGGTCTTACATGGTATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * **** * *
17208867 GGTCCCGAT---A-G-CCCAG-CTATGGTCTTACACAAAATTATATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* *
17208910 GATGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
17208951 GTACATAACC
Statistics
Matches: 139, Mismatches: 33, Indels: 16
0.74 0.18 0.09
Matches are distributed among these distances:
42 1 0.01
43 28 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 104 0.75
49 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:17219342 original size:12 final size:13
Alignment explanation
Indices: 17219308--17219344 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
17219298 CCTTGAATTG
17219308 ATTTGTTTTTTTC
1 ATTTGTTTTTTTC
17219321 -TTTGTCTTTTTTC
1 ATTTGT-TTTTTTC
17219334 ATTT-TTTTTTT
1 ATTTGTTTTTTT
17219345 GCAAAAATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 11 0.50
13 8 0.36
14 3 0.14
ACGTcount: A:0.05, C:0.08, G:0.05, T:0.81
Consensus pattern (13 bp):
ATTTGTTTTTTTC
Found at i:17220959 original size:27 final size:27
Alignment explanation
Indices: 17220921--17220976 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
17220911 CCCACTAAAG
*
17220921 TTTTGACAATTTTACCCTCGGTAAAAT
1 TTTTGACAATTTTACCATCGGTAAAAT
* *
17220948 TTTTGACGATTTTACCATTGGTAAAAT
1 TTTTGACAATTTTACCATCGGTAAAAT
17220975 TT
1 TT
17220977 CAAGAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (27 bp):
TTTTGACAATTTTACCATCGGTAAAAT
Found at i:17231713 original size:43 final size:42
Alignment explanation
Indices: 17231642--17231758 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
17231632 AGGATTCCGT
* * *
17231642 TATCTGATTTCGTGTAAGACCACGTCTGGGACGTTGACATCAAC
1 TATCTGATTTCGTGTAAGACCATGTCTGGGACATCGACATC--C
*
17231686 T-TCTG-TTTACGTGTAAGACCATGTCTGGGACATCGACATCG
1 TATCTGATTT-CGTGTAAGACCATGTCTGGGACATCGACATCC
* *
17231727 TATCTGATTTCGTGTAAGACCCTGTCTAGGAC
1 TATCTGATTTCGTGTAAGACCATGTCTGGGAC
17231759 TGTGGCATCG
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.02
42 27 0.42
43 35 0.55
44 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (42 bp):
TATCTGATTTCGTGTAAGACCATGTCTGGGACATCGACATCC
Found at i:17231768 original size:42 final size:42
Alignment explanation
Indices: 17231642--17231768 Score: 120
Period size: 42 Copynumber: 3.0 Consensus size: 42
17231632 AGGATTCCGT
17231642 TATCTGATTTCGTGTAAGACCAC-GTCTGGGAC-GTTGACATC-
1 TATCTGATTTCGTGTAAGACC-CTGTCTGGGACTG-TGACATCG
* * *
17231683 AACTTCTG-TTTACGTGTAAGACCATGTCTGGGACAT-CGACATCG
1 TA--TCTGATTT-CGTGTAAGACCCTGTCTGGGAC-TGTGACATCG
* *
17231727 TATCTGATTTCGTGTAAGACCCTGTCTAGGACTGTGGCATCG
1 TATCTGATTTCGTGTAAGACCCTGTCTGGGACTGTGACATCG
17231769 ATGTTTCATT
Statistics
Matches: 69, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
41 2 0.03
42 33 0.48
43 33 0.48
44 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (42 bp):
TATCTGATTTCGTGTAAGACCCTGTCTGGGACTGTGACATCG
Found at i:17234010 original size:411 final size:411
Alignment explanation
Indices: 17233248--17234076 Score: 1541
Period size: 411 Copynumber: 2.0 Consensus size: 411
17233238 ATAGTGTGAC
*
17233248 GAATCCTAACAATTAAATGGGCTTTTATATAGCAAATGGGTCCCGATCGAGCTGTAGCGGATGAT
1 GAATCCTAACAATTAAATGGGCTTTTATATAGCAAAGGGGTCCCGATCGAGCTGTAGCGGATGAT
*
17233313 GTCAAAAGTAATGCGCCTACTCCCACACAAAGGACGACACCATCCCATTCTAGACCGGCTATGAG
66 GTCAAAAGTAATGCACCTACTCCCACACAAAGGACGACACCATCCCATTCTAGACCGGCTATGAG
17233378 TAGCCGTGATGGTGACACTAGACAAGCCTTCAATCAGATGATGAACGATTGGTTTAGCCAATATA
131 TAGCCGTGATGGTGACACTAGACAAGCCTTCAATCAGATGATGAACGATTGGTTTAGCCAATATA
* *
17233443 TTAGAATCAATCCGGCTGTTCAAAAACCTCTACCCCGGTTAATTCACCACAAGCTCCTGTTATGC
196 TTAAAATCAATCCGGCTGTTCAAAAACCTCTACCCCAGTTAATTCACCACAAGCTCCTGTTATGC
*
17233508 CATCAGTGAATCCGGTTCAGATAAGTAATCCTCCAGTAGATAAGATTAGAAAGTATGGGGCTGAA
261 CATCAGTGAATCCGGTTCAGATAAGTAACCCTCCAGTAGATAAGATTAGAAAGTATGGGGCTGAA
*
17233573 GAGTTCTGAGCTACAATGAACGATGATGCTGAAAAGGCCGAGTTCTGGTTAGAGAACATGATCAG
326 GAGTTCTGAGCTACAATGAACGATGATGCTGAAAAGGCCGAGTTCTGGTTAGAGAACACGATCAG
17233638 AGTGTTTGATGAATTGTCTTT
391 AGTGTTTGATGAATTGTCTTT
*
17233659 GAATCCTAACAATTAAATGTGCTTTTATATAGCAAAGGGGTCCCGATCGAGCTGTAGCGGATGAT
1 GAATCCTAACAATTAAATGGGCTTTTATATAGCAAAGGGGTCCCGATCGAGCTGTAGCGGATGAT
* * *
17233724 GTCAAAAGTAATGCACCTGCTCCCACGCAAGGGACGACACCATCCCATTCTAGACCGGCTATGAG
66 GTCAAAAGTAATGCACCTACTCCCACACAAAGGACGACACCATCCCATTCTAGACCGGCTATGAG
* * *
17233789 TAGCCGTGATGGTGACGCTAGACAAGCCTTCTATCAGATGATGAATGATTGGTTTAGCCAATATA
131 TAGCCGTGATGGTGACACTAGACAAGCCTTCAATCAGATGATGAACGATTGGTTTAGCCAATATA
17233854 TTAAAATCAATCCGGCTGTTCAAAAACCTCTACCCCAGTTAATTCACCACAAGCTCCTGTTATGC
196 TTAAAATCAATCCGGCTGTTCAAAAACCTCTACCCCAGTTAATTCACCACAAGCTCCTGTTATGC
17233919 CATCAGTGAATCCGGTTCAGATAAGTAACCCTCCAGTAGATAAGATTAGAAAGTATGGGGCTGAA
261 CATCAGTGAATCCGGTTCAGATAAGTAACCCTCCAGTAGATAAGATTAGAAAGTATGGGGCTGAA
17233984 GAGTTCTGAGCTACAATGAACGATGATGCTGAAAAGGCCGAGTTCTGGTTAGAGAACACGATCAG
326 GAGTTCTGAGCTACAATGAACGATGATGCTGAAAAGGCCGAGTTCTGGTTAGAGAACACGATCAG
17234049 AGTGTTTGATGAATTGTCTTT
391 AGTGTTTGATGAATTGTCTTT
17234070 GAATCCT
1 GAATCCT
17234077 GAGGAATGTA
Statistics
Matches: 405, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
411 405 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (411 bp):
GAATCCTAACAATTAAATGGGCTTTTATATAGCAAAGGGGTCCCGATCGAGCTGTAGCGGATGAT
GTCAAAAGTAATGCACCTACTCCCACACAAAGGACGACACCATCCCATTCTAGACCGGCTATGAG
TAGCCGTGATGGTGACACTAGACAAGCCTTCAATCAGATGATGAACGATTGGTTTAGCCAATATA
TTAAAATCAATCCGGCTGTTCAAAAACCTCTACCCCAGTTAATTCACCACAAGCTCCTGTTATGC
CATCAGTGAATCCGGTTCAGATAAGTAACCCTCCAGTAGATAAGATTAGAAAGTATGGGGCTGAA
GAGTTCTGAGCTACAATGAACGATGATGCTGAAAAGGCCGAGTTCTGGTTAGAGAACACGATCAG
AGTGTTTGATGAATTGTCTTT
Found at i:17236204 original size:35 final size:35
Alignment explanation
Indices: 17236158--17236225 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
17236148 TGCGAGAAGT
17236158 TGGTTTTCTAGGTCATATTGTATCAGCCTCTAGCA
1 TGGTTTTCTAGGTCATATTGTATCAGCCTCTAGCA
17236193 TGGTTTTCTAGGTCATATTGTATCAGCCTCTAG
1 TGGTTTTCTAGGTCATATTGTATCAGCCTCTAG
17236226 TATCCGTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (35 bp):
TGGTTTTCTAGGTCATATTGTATCAGCCTCTAGCA
Found at i:17242649 original size:27 final size:26
Alignment explanation
Indices: 17242615--17242680 Score: 123
Period size: 27 Copynumber: 2.5 Consensus size: 26
17242605 GAAATGACTG
17242615 TTATACCCCTATGAGGTAAATTACAA
1 TTATACCCCTATGAGGTAAATTACAA
17242641 TTATAACCCCTATGAGGTAAATTACAA
1 TTAT-ACCCCTATGAGGTAAATTACAA
17242668 TTATACCCCTATG
1 TTATACCCCTATG
17242681 TGATGTATGA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 13 0.33
27 26 0.67
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (26 bp):
TTATACCCCTATGAGGTAAATTACAA
Found at i:17245383 original size:8 final size:8
Alignment explanation
Indices: 17245365--17245394 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
17245355 AAGAAAATTA
17245365 TGTGTATTT
1 TGTG-ATTT
17245374 TGTGATTT
1 TGTGATTT
17245382 TGTGATTT
1 TGTGATTT
17245390 TGTGA
1 TGTGA
17245395 ATTAGGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (8 bp):
TGTGATTT
Found at i:17247050 original size:26 final size:26
Alignment explanation
Indices: 17247014--17247067 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
17247004 AGAAGGAAGG
*
17247014 TGATTAAACATTACTCATACTCTCTT
1 TGATGAAACATTACTCATACTCTCTT
17247040 TGATGAAACATTACTCATACTCTCTT
1 TGATGAAACATTACTCATACTCTCTT
17247066 TG
1 TG
17247068 CATGTAGATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (26 bp):
TGATGAAACATTACTCATACTCTCTT
Found at i:17256317 original size:4 final size:4
Alignment explanation
Indices: 17256308--17256333 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
17256298 CATATTTGAA
17256308 ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC AT
17256334 CACTTATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:17260777 original size:13 final size:13
Alignment explanation
Indices: 17260759--17260783 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17260749 TGGTCATCAT
17260759 GGTGTGAACACAA
1 GGTGTGAACACAA
17260772 GGTGTGAACACA
1 GGTGTGAACACA
17260784 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:17261352 original size:30 final size:30
Alignment explanation
Indices: 17261267--17261363 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 30
17261257 TAAACTAAAA
* * * *
17261267 TGAGCTAAGCTTTAGCTTGTGACCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * * *
17261297 CGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
*
17261327 TGAGCTAAGGTTTAGCTCGTGAGCTG-AGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
17261356 ATGAGCTA
1 -TGAGCTA
17261364 GGAGTGAGCT
Statistics
Matches: 49, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
29 3 0.06
30 46 0.94
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:17269695 original size:23 final size:22
Alignment explanation
Indices: 17269664--17269706 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
17269654 TATCCATCAA
*
17269664 AAACATCCAATATTTATTAATGG
1 AAACATCCAAAATTT-TTAATGG
*
17269687 AAACTTCCAAAATTTTTAAT
1 AAACATCCAAAATTTTTAAT
17269707 AAAATAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (22 bp):
AAACATCCAAAATTTTTAATGG
Found at i:17273071 original size:43 final size:42
Alignment explanation
Indices: 17272975--17273138 Score: 122
Period size: 43 Copynumber: 3.9 Consensus size: 42
17272965 ATCAAGATGT
* *
17272975 GATTACATGTAAGACCATGTCTAGGAAATTGGCATTATATTGA
1 GATTACGTGTAAGACCATGTCTGGGAAATTGGCATTATATT-A
*
17273018 GATTACGTGTAAGACCATGTCTGGGACATTGGCA-TAGTTAATT-
1 GATTACGTGTAAGACCATGTCTGGGAAATTGGCATTA--T-ATTA
** * * *
17273061 GATTTTGTGTAAGACCCTGTCTGGGATAA-TGGCGTCGATATGT-
1 GATTACGTGTAAGACCATGTCTGGGA-AATTGGCAT-TATAT-TA
* * * *
17273104 GATAACATGTAAGACCATATCTGGGATA-TGGCATT
1 GATTACGTGTAAGACCATGTCTGGGAAATTGGCATT
17273139 GTTCAAGCTT
Statistics
Matches: 96, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 10 0.10
43 80 0.83
44 2 0.02
45 4 0.04
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTACGTGTAAGACCATGTCTGGGAAATTGGCATTATATTA
Found at i:17277678 original size:47 final size:48
Alignment explanation
Indices: 17277609--17277734 Score: 164
Period size: 48 Copynumber: 2.6 Consensus size: 48
17277599 GTTACATGTT
*
17277609 TAACCGTGATATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * * * * *
17277656 TAACCGTGGCATATCCGCTTAGCATCACATTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* *
17277704 TAATCGTGGTATATCCACTTAGCAGCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
17277735 TTTTCATTCC
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 27 0.41
48 39 0.59
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:17285540 original size:46 final size:45
Alignment explanation
Indices: 17285487--17285662 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
17285477 GATATTGGCA
17285487 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
17285533 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
17285580 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
17285626 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
17285663 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:17285642 original size:93 final size:93
Alignment explanation
Indices: 17285483--17285654 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
17285473 CTAGGATATT
* *
17285483 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
17285548 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
17285576 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
17285641 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
17285655 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:17288623 original size:15 final size:15
Alignment explanation
Indices: 17288603--17288666 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
17288593 GTATCTTGGG
17288603 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
17288618 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
17288633 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
17288648 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
17288661 TTTCTT
1 TTTCTT
17288667 GTTATCTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.13
14 4 0.09
15 33 0.73
16 2 0.04
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:17291199 original size:46 final size:45
Alignment explanation
Indices: 17291040--17291213 Score: 206
Period size: 46 Copynumber: 3.8 Consensus size: 45
17291030 ATTTGGGCAT
* *
17291040 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
*** * * * *
17291085 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAACGC
*
17291130 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
*
17291178 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
17291214 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
45 31 0.29
46 46 0.43
47 28 0.26
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:17298471 original size:11 final size:10
Alignment explanation
Indices: 17298436--17298467 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
17298426 CCCCTTCTTG
17298436 ATAAATTTTT
1 ATAAATTTTT
*
17298446 ATAATTTTTT
1 ATAAATTTTT
17298456 ATAAATTTTT
1 ATAAATTTTT
17298466 AT
1 AT
17298468 TAAAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
ATAAATTTTT
Found at i:17299395 original size:2 final size:2
Alignment explanation
Indices: 17299351--17299381 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
17299341 GTTATGTGCT
17299351 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
17299382 TGTGAGGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:17306020 original size:68 final size:67
Alignment explanation
Indices: 17305956--17306091 Score: 159
Period size: 66 Copynumber: 2.0 Consensus size: 67
17305946 ATATATTTGC
* * * *
17305956 ATGTATATACAAAATAATATATTAA-AAATTAAAATTTAGATTATAAGTACATATTTG-AAAATA
1 ATGTATA-A-AAAATAATATATTAAGAAACTAAAA-TTAGACTATAAATACATATATGAAAAATA
17306019 TTTAA
63 TTTAA
* * * *
17306024 ATGTATAATATATAATTTATTAAGAAACTAAAATTAGACTATAAATATATATATGAAAAATATTT
1 ATGTATAAAAAATAATATATTAAGAAACTAAAATTAGACTATAAATACATATATGAAAAATATTT
17306089 AA
66 AA
17306091 A
1 A
17306092 AACATAGTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
66 30 0.52
67 21 0.36
68 7 0.12
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.38
Consensus pattern (67 bp):
ATGTATAAAAAATAATATATTAAGAAACTAAAATTAGACTATAAATACATATATGAAAAATATTT
AA
Found at i:17307975 original size:27 final size:28
Alignment explanation
Indices: 17307938--17308077 Score: 157
Period size: 27 Copynumber: 5.2 Consensus size: 28
17307928 AGCATGGCTG
* *
17307938 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
17307964 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
* *
17307992 CCAGA-ATAGATATGTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
17308019 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* * *
17308046 CCAGAT-CAAATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
17308073 CCAGA
1 CCAGA
17308078 ACGCTTCCTC
Statistics
Matches: 102, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
26 5 0.05
27 81 0.79
28 16 0.16
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:17308735 original size:26 final size:26
Alignment explanation
Indices: 17308699--17308834 Score: 245
Period size: 26 Copynumber: 5.2 Consensus size: 26
17308689 CATGATATTC
*
17308699 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
17308725 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
17308751 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
17308777 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
17308803 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
17308829 TTATCA
1 TTATCA
17308835 ATTTGTATCA
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 108 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:17314716 original size:25 final size:25
Alignment explanation
Indices: 17314682--17314731 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
17314672 GCCAATCTAA
*
17314682 AAATTATAATTGATTGATTAGATCC
1 AAATCATAATTGATTGATTAGATCC
17314707 AAATCATAATTGATTGATTAGATCC
1 AAATCATAATTGATTGATTAGATCC
17314732 CTGAGAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (25 bp):
AAATCATAATTGATTGATTAGATCC
Found at i:17320117 original size:4 final size:4
Alignment explanation
Indices: 17320103--17320142 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
17320093 GTAATGATTG
* * *
17320103 AATA CATA AATA AATA AATA AATT AATG AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
17320143 TAGAAAGTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (4 bp):
AATA
Found at i:17320495 original size:25 final size:22
Alignment explanation
Indices: 17320460--17320556 Score: 76
Period size: 25 Copynumber: 4.3 Consensus size: 22
17320450 GGATAAATAC
17320460 ATATA-AC-TAATAATACTAACGA
1 ATATATACATAAT-ATACTAAC-A
*
17320482 TATATATACATAATATACAAAACAAA
1 -ATATATACATAATATAC-TAAC--A
* *
17320508 ATATACACATAATATATTAA-A
1 ATATATACATAATATACTAACA
17320529 ATATATACATAATATACGTAA-A
1 ATATATACATAATATAC-TAACA
17320551 ATATAT
1 ATATAT
17320557 GTAATGTCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
21 16 0.26
22 10 0.16
23 5 0.08
24 8 0.13
25 22 0.35
26 1 0.02
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (22 bp):
ATATATACATAATATACTAACA
Found at i:17320531 original size:21 final size:22
Alignment explanation
Indices: 17320505--17320555 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 22
17320495 TATACAAAAC
*
17320505 AAAATATACACATAATATA-TT
1 AAAATATACACATAATATACGT
*
17320526 AAAATATATACATAATATACGT
1 AAAATATACACATAATATACGT
17320548 AAAATATA
1 AAAATATA
17320556 TGTAATGTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.59, C:0.08, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATATACACATAATATACGT
Found at i:17322510 original size:43 final size:44
Alignment explanation
Indices: 17322458--17322561 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 44
17322448 GATCTGTTTT
*
17322458 CCTACTGCTTAGGGGGTTT-AGATCTGTACATTCAACCTGTTAC
1 CCTACTGCTTAGGGGGTTTGAGATCTGTAAATTCAACCTGTTAC
* * *** *
17322501 CCTACTGCTTA-GGGATTTGAGGTCTGTAAATTTGGCTTGTTAC
1 CCTACTGCTTAGGGGGTTTGAGATCTGTAAATTCAACCTGTTAC
*
17322544 CCTATTGCTTAGGGGGTT
1 CCTACTGCTTAGGGGGTT
17322562 AAAGCTCATC
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
42 6 0.12
43 39 0.78
44 5 0.10
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (44 bp):
CCTACTGCTTAGGGGGTTTGAGATCTGTAAATTCAACCTGTTAC
Found at i:17322912 original size:86 final size:83
Alignment explanation
Indices: 17322711--17322904 Score: 221
Period size: 87 Copynumber: 2.3 Consensus size: 83
17322701 TGTAATTTTT
* * ** *
17322711 AGCCTATTACCCTACTGCTTAGGGGGTTAAGGCTCGTCTTTGATCTATTTCCCTACTGCTTAGGG
1 AGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCTCGTCTTCGATCTAGCTCCCTACTGCTTAAGG
* * *
17322776 TGATAAGATCTATAAATTC
65 AGATAAAATCTAGAAATTC
17322795 AGCCTGTTACCCTACTGCTTAGGCGGTTAAGGCCCTCCGTCTTCGATCT-GCTCCGCTACTGCTT
1 AGCCTGTTACCCTACTGCTTAGG-GGTTAAGG--CT-CGTCTTCGATCTAGCTCC-CTACTGCTT
*
17322859 AAGGAGATAAAATCT-GCAATTC
61 AAGGAGATAAAATCTAGAAATTC
* *
17322881 GGTCTGTTACCCTACTGCTTAGGG
1 AGCCTGTTACCCTACTGCTTAGGG
17322905 AGATAAGGTT
Statistics
Matches: 94, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
83 2 0.02
84 28 0.30
85 1 0.01
86 31 0.33
87 32 0.34
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (83 bp):
AGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTCGTCTTCGATCTAGCTCCCTACTGCTTAAGGA
GATAAAATCTAGAAATTC
Done.