Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 68 of 311
Found at i:20940191 original size:133 final size:133
Alignment explanation
Indices: 20940037--20940335 Score: 402
Period size: 133 Copynumber: 2.2 Consensus size: 133
20940027 AAATGGCGGG
* *
20940037 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCATTATCTCTCTGAAGTAGCA
* *
20940102 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAG-AAAGGAAACAGACTGAAAATTA
66 AGAGAGCAGGTTGAAGATAAAAGTCTTATCTTCCTGAGGTAGCAAA-GAAACAAACTGAAAATTA
*
20940166 TAGA
130 CAGA
** * * * *
20940170 TCTTATCTTTATGTATTGGCTATGGAGCAGATTTTAGCCCCCGGTATTATCTCTCTGAAGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCATTATCTCTCTGAAGTAGCA
* * * **
20940235 AGAGAGCAGGTTGAAGATAAAAGTCTTCTTTTCTTGAGGTAGCAAAGAAGTAAACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATAAAAGTCTTATCTTCCTGAGGTAGCAAAGAAACAAACTGAAAATTAC
20940300 AGA
131 AGA
* ** *
20940303 TCTTATCTCCTTGTATCAACTATGGAACAGATT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATT
20940336 GAAAATGGCG
Statistics
Matches: 142, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
133 139 0.98
134 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (133 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCATTATCTCTCTGAAGTAGCA
AGAGAGCAGGTTGAAGATAAAAGTCTTATCTTCCTGAGGTAGCAAAGAAACAAACTGAAAATTAC
AGA
Found at i:20940473 original size:44 final size:44
Alignment explanation
Indices: 20940391--20940474 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 44
20940381 TTAGCCACCG
* * *
20940391 GCCTTATCTTTTTAAGGTAGCAAGAGAGCAGGTCGAAAATACAA
1 GCCTTATCTTCTTAAGATAGCAAGAGAGCAGCTCGAAAATACAA
*
20940435 GCCTTATCTTCTTGAGATAGCAAG-GAAGCAGACT-GAAAAT
1 GCCTTATCTTCTTAAGATAGCAAGAG-AGCAG-CTCGAAAAT
20940475 TACAGATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.03
44 32 0.94
45 1 0.03
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (44 bp):
GCCTTATCTTCTTAAGATAGCAAGAGAGCAGCTCGAAAATACAA
Found at i:20940489 original size:178 final size:178
Alignment explanation
Indices: 20940170--20940490 Score: 446
Period size: 178 Copynumber: 1.8 Consensus size: 178
20940160 AAATTATAGA
** * * * *
20940170 TCTTATCTTTATGTATTGGCTATGGAGCAGATTTTAGCCCCCGGTATTATCTCTCTGAAGTAGCA
1 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCGGCATTATCTCTCTGAAGTAGCA
* * * * * * *
20940235 AGAGAGCAGGTTGAAGATAAAAGTCTTCTTTTCTTGAGGTAGCAAAGAAGTAAACTGAAAATTAC
66 AGAGAGCAGGTCGAAAATAAAAGCCTTATCTTCTTGAGATAGCAAAGAAGCAAACTGAAAATTAC
20940300 AGATCTTATCTCCTTGTATCAACTATGGAACAGATTGAAAATGGCGAG
131 AGATCTTATCTCCTTGTATCAACTATGGAACAGATTGAAAATGGCGAG
* * *
20940348 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCGGCCTTATCT-TTTTAAGGTAGC
1 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCGGCATTATCTCTCTGAA-GTAGC
* * *
20940412 AAGAGAGCAGGTCGAAAATACAAGCCTTATCTTCTTGAGATAGCAAGGAAGCAGACTGAAAATTA
65 AAGAGAGCAGGTCGAAAATAAAAGCCTTATCTTCTTGAGATAGCAAAGAAGCAAACTGAAAATTA
*
20940477 CAGATTTTATCTCC
130 CAGATCTTATCTCC
20940491 CTAAACAGTA
Statistics
Matches: 122, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
177 4 0.03
178 118 0.97
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (178 bp):
TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCGGCATTATCTCTCTGAAGTAGCA
AGAGAGCAGGTCGAAAATAAAAGCCTTATCTTCTTGAGATAGCAAAGAAGCAAACTGAAAATTAC
AGATCTTATCTCCTTGTATCAACTATGGAACAGATTGAAAATGGCGAG
Found at i:20940538 original size:44 final size:44
Alignment explanation
Indices: 20940487--20940808 Score: 162
Period size: 44 Copynumber: 7.3 Consensus size: 44
20940477 CAGATTTTAT
* * *
20940487 CTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAA
1 CTCCCTAAGCAGTAGTGGAACAGATCGAAGACAGTGAGCCTTAA
* * * * * * * *
20940531 CCCCCTAAGTAGTAG-GGTAATAG-GCTGAA-A-ATTACAGATCTTAT
1 CTCCCTAAGCAGTAGTGG-AACAGATC-GAAGACAGT-GAG-CCTTAA
* * *
20940575 CTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAA
1 CTCCCTAAGCAGTAGTGGAACAGATCGAAGACAGTGAGCCTTAA
* * * * ** *
20940619 CCCCCTAAGCAGTAG-GGTAACAG-GCTGAA-A-ATTATAGATATTAT
1 CTCCCTAAGCAGTAGTGG-AACAGATC-GAAGACAGT-GAG-CCTTAA
* * *
20940663 CTCCTTAAGCAGTAGTGGACCAGATCGAAGACGGTGAGCCTTAA
1 CTCCCTAAGCAGTAGTGGAACAGATCGAAGACAGTGAGCCTTAA
* * ** * * * *
20940707 CCCCCTAAGCAGTAG-GGTAACAG-GCGGGGA-ATTACAGATCTTAT
1 CTCCCTAAGCAGTAGTGG-AACAGATCGAAGACAGT-GAG-CCTTAA
* *
20940751 CTCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAA
1 CTCCCTAAGCAGTAGTGGAACAGATCGAAGACAGTGAGCCTTAA
20940795 CTCCCTAAGCAGTA
1 CTCCCTAAGCAGTA
20940809 AGGTAACAGG
Statistics
Matches: 192, Mismatches: 64, Indels: 44
0.64 0.21 0.15
Matches are distributed among these distances:
42 3 0.02
43 20 0.10
44 145 0.76
45 20 0.10
46 4 0.02
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (44 bp):
CTCCCTAAGCAGTAGTGGAACAGATCGAAGACAGTGAGCCTTAA
Found at i:20940853 original size:88 final size:88
Alignment explanation
Indices: 20940467--20940853 Score: 603
Period size: 88 Copynumber: 4.4 Consensus size: 88
20940457 AGGAAGCAGA
* *
20940467 CTGAAAATTACAGATTTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
1 CTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
* *
20940532 CCCCTAAGTAGTAGGGTAATAGG
66 CCCCTAAGCAGTAGGGTAACAGG
*
20940555 CTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAAC
1 CTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
20940620 CCCCTAAGCAGTAGGGTAACAGG
66 CCCCTAAGCAGTAGGGTAACAGG
* * * *
20940643 CTGAAAATTATAGATATTATCTCCTTAAGCAGTAGTGGACCAGATCGAAGACGGTGAGCCTTAAC
1 CTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
20940708 CCCCTAAGCAGTAGGGTAACAGG
66 CCCCTAAGCAGTAGGGTAACAGG
* ** * *
20940731 CGGGGAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAAC
1 CTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
* *
20940796 TCCCTAAGCAGTAAGGTAACAGG
66 CCCCTAAGCAGTAGGGTAACAGG
* * *
20940819 CTAAAAATTACAGATCTTATCCCCCTAAGTAGTAG
1 CTGAAAATTACAGATCTTATCTCCCTAAGCAGTAG
20940854 AGAAACTGAC
Statistics
Matches: 271, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 271 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.22
Consensus pattern (88 bp):
CTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
CCCCTAAGCAGTAGGGTAACAGG
Found at i:20941921 original size:15 final size:15
Alignment explanation
Indices: 20941889--20941934 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
20941879 ATTTATCTAT
20941889 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
20941906 TTATATTTCTATTTA
1 TTATATTTCTATTTA
* *
20941921 TTGTACTTCTATTT
1 TTATATTTCTATTT
20941935 CTATTCCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 15 0.56
16 1 0.04
17 11 0.41
ACGTcount: A:0.24, C:0.11, G:0.02, T:0.63
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:20941932 original size:29 final size:29
Alignment explanation
Indices: 20941869--20941962 Score: 83
Period size: 29 Copynumber: 3.3 Consensus size: 29
20941859 TGTCATTCAA
*
20941869 TACTATTATTATTTATCTATTTATATTTC
1 TACTATTATTATTTATCTATTTATATTAC
20941898 TACTATTATTATATT-TCTATTTAT-TGTAC
1 TACTATTATTAT-TTATCTATTTATAT-TAC
* *
20941927 TTCTATT-TCTA-TT-CCTATTTATA-TAC
1 TACTATTAT-TATTTATCTATTTATATTAC
*
20941953 TAATATTATT
1 TACTATTATT
20941963 TTCATTATTA
Statistics
Matches: 55, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
26 9 0.16
27 11 0.20
28 2 0.04
29 31 0.56
30 2 0.04
ACGTcount: A:0.28, C:0.12, G:0.01, T:0.60
Consensus pattern (29 bp):
TACTATTATTATTTATCTATTTATATTAC
Found at i:20942206 original size:26 final size:25
Alignment explanation
Indices: 20942176--20942235 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
20942166 TATATTATTT
*
20942176 ATTTTTATCGTTTTACCTATTTTAAA
1 ATTTTTATC-TATTACCTATTTTAAA
* * *
20942202 CTTTTATATCTATTACTTGTTTTAAA
1 ATTTT-TATCTATTACCTATTTTAAA
20942228 ATTTTTAT
1 ATTTTTAT
20942236 ATTGTTTGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 3 0.11
26 21 0.75
27 4 0.14
ACGTcount: A:0.27, C:0.10, G:0.03, T:0.60
Consensus pattern (25 bp):
ATTTTTATCTATTACCTATTTTAAA
Found at i:20944303 original size:14 final size:14
Alignment explanation
Indices: 20944265--20944307 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
20944255 CAAAATGTAC
20944265 AATATAATTAAA-T
1 AATATAATTAAATT
20944278 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
20944293 AA-ATAATTTAATT
1 AATATAATTAAATT
20944306 AA
1 AA
20944308 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:20948402 original size:12 final size:12
Alignment explanation
Indices: 20948385--20948411 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
20948375 TACTTATTCT
20948385 TTCTCTATGATA
1 TTCTCTATGATA
20948397 TTCTCTATGATA
1 TTCTCTATGATA
20948409 TTC
1 TTC
20948412 CAATCACCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.19, G:0.07, T:0.52
Consensus pattern (12 bp):
TTCTCTATGATA
Found at i:20949114 original size:7 final size:7
Alignment explanation
Indices: 20949097--20949166 Score: 54
Period size: 7 Copynumber: 9.7 Consensus size: 7
20949087 TAATCTATAC
20949097 ATAAT-A
1 ATAATAA
20949103 ATAATAA
1 ATAATAA
20949110 ATAATAA
1 ATAATAA
*
20949117 ATTATGAA
1 ATAAT-AA
*
20949125 AGTTATGAA
1 A-TAAT-AA
**
20949134 ATTTTAAA
1 ATAAT-AA
20949142 ATAAT-A
1 ATAATAA
20949148 ATAATAA
1 ATAATAA
20949155 ATAATAA
1 ATAATAA
20949162 ATAAT
1 ATAAT
20949167 TATCATTATA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
6 11 0.20
7 25 0.45
8 11 0.20
9 8 0.15
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.34
Consensus pattern (7 bp):
ATAATAA
Found at i:20950602 original size:20 final size:19
Alignment explanation
Indices: 20950567--20950616 Score: 82
Period size: 20 Copynumber: 2.6 Consensus size: 19
20950557 TTTGTGATCT
20950567 AAACTCTATCATCCTCTCA
1 AAACTCTATCATCCTCTCA
*
20950586 AAACTCATATTATCCTCTCA
1 AAACTC-TATCATCCTCTCA
20950606 AAACTCTATCA
1 AAACTCTATCA
20950617 AATTCTTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (19 bp):
AAACTCTATCATCCTCTCA
Found at i:20970546 original size:48 final size:48
Alignment explanation
Indices: 20970474--20970791 Score: 397
Period size: 48 Copynumber: 6.6 Consensus size: 48
20970464 TATGTGTGTT
* * *
20970474 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATTATGAGAGCC
* * * *
20970522 AGTGTAAGACCATCTTTGGAACATGGCATCGACAATATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATTATGAGAGCC
* * *
20970570 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATTATGAGAGCC
*
20970618 AGTGTAAGACCATGTTTGGAACATGGCATCAG-CA-ATGTAATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACAT-T-ATGAGAGCC
* ** *
20970666 AGTGTAAGACTATGCCTGGAACATGACATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATTATGAGAGCC
* ** *
20970714 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTACGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATTATGAGAGCC
** * *
20970762 AGACTAAGACCATGTTTGGGACATTGCATC
1 AGTGTAAGACCATGTTTGGAACATGGCATC
20970792 AACATTGAGA
Statistics
Matches: 233, Mismatches: 33, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
46 2 0.01
47 3 0.01
48 223 0.96
49 3 0.01
50 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATTATGAGAGCC
Found at i:20970638 original size:96 final size:96
Alignment explanation
Indices: 20970474--20970791 Score: 485
Period size: 96 Copynumber: 3.3 Consensus size: 96
20970464 TATGTGTGTT
* *
20970474 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCCAGTGTAAGACCATCTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTT
*
20970539 GGAACATGGCATCGACAATATTATGAGAGCC
66 GGAACATGGCATCGACAATGTTATGAGAGCC
*
20970570 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTT
*
20970635 GGAACATGGCATC-AGCAATGTAATGAGAGCC
66 GGAACATGGCATCGA-CAATGTTATGAGAGCC
* * * *
20970666 AGTGTAAGACTATGCCTGGAACATGACATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTT
* *
20970731 GGAACATGGCATCGGCAATGTTACGAGAGCC
66 GGAACATGGCATCGACAATGTTATGAGAGCC
** * *
20970762 AGACTAAGACCATGTTTGGGACATTGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
20970792 AACATTGAGA
Statistics
Matches: 199, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
95 1 0.01
96 198 0.99
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTT
GGAACATGGCATCGACAATGTTATGAGAGCC
Found at i:20970805 original size:48 final size:47
Alignment explanation
Indices: 20970515--20970825 Score: 175
Period size: 48 Copynumber: 6.5 Consensus size: 47
20970505 GCCACATTAT
* * * * *
20970515 GAGAGCCAGTGTAAGACCATCTTTGGAACATGGCATCGACAAT-ATTAT
1 GAGAGCCAG-ATAAGACCATGTTTGGAACATGGCATCAACAATGA-GAC
* * * * * *
20970563 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAT--TAT
1 GAGAGCCAG-ATAAGACCATGTTTGGAACATGGCATC-AACA-ATGAGAC
* * *
20970611 GAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTA-AT
1 GAGAGCCAG-ATAAGACCATGTTTGGAACATGGCATCAACAATG-AGAC
* * ** * ** * *
20970659 GAGAGCCAGTGTAAGACTATGCCTGGAACATGACATCGGCCACAT--TAT
1 GAGAGCCAG-ATAAGACCATGTTTGGAACATGGCATC-AACA-ATGAGAC
* ** **
20970707 GAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTAC
1 GAGAGCCAG-ATAAGACCATGTTTGGAACATGGCATCAACAATGAGAC
* * *
20970755 GAGAGCCAGACTAAGACCATGTTTGGGACATTGCATCAACATTGAGAC
1 GAGAGCCAGA-TAAGACCATGTTTGGAACATGGCATCAACAATGAGAC
*
20970803 GAGAGCTAGTATAAGACCATGTT
1 GAGAGCCAG-ATAAGACCATGTT
20970826 AGAGATATGA
Statistics
Matches: 222, Mismatches: 29, Indels: 24
0.81 0.11 0.09
Matches are distributed among these distances:
46 4 0.02
47 6 0.03
48 203 0.91
49 5 0.02
50 4 0.02
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (47 bp):
GAGAGCCAGATAAGACCATGTTTGGAACATGGCATCAACAATGAGAC
Found at i:20970807 original size:144 final size:144
Alignment explanation
Indices: 20970515--20970822 Score: 386
Period size: 144 Copynumber: 2.1 Consensus size: 144
20970505 GCCACATTAT
* * *
20970515 GAGAGCCAGTGTAAGACCATCTTTGGAACATGGCATCGACAATATTATGAGAGCCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACCATCTCTGGAACATGACATCGACAACATTATGAGAGCCAGTGTAAGAC
* * * **
20970580 CATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGC
66 CATGTCTGGAACATGGCATCGACAACATTACGAGAGCCAGACTAAGACCATGTTTGGAACATGGC
* *
20970645 ATCAGCAATGTAAT
131 ATCAACAATGTAAC
* * *
20970659 GAGAGCCAGTGTAAGACTATGC-CTGGAACATGACATCGGCCACATTATGAGAGCCAGTGTAAGA
1 GAGAGCCAGTGTAAGACCAT-CTCTGGAACATGACATCGACAACATTATGAGAGCCAGTGTAAGA
* * ** * *
20970723 CCATGTTTGGAACATGGCATCGGCAATGTTACGAGAGCCAGACTAAGACCATGTTTGGGACATTG
65 CCATGTCTGGAACATGGCATCGACAACATTACGAGAGCCAGACTAAGACCATGTTTGGAACATGG
*
20970788 CATCAACATTG-AGAC
130 CATCAACAATGTA-AC
* *
20970803 GAGAGCTAGTATAAGACCAT
1 GAGAGCCAGTGTAAGACCAT
20970823 GTTAGAGATA
Statistics
Matches: 139, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
143 1 0.01
144 137 0.99
145 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (144 bp):
GAGAGCCAGTGTAAGACCATCTCTGGAACATGACATCGACAACATTATGAGAGCCAGTGTAAGAC
CATGTCTGGAACATGGCATCGACAACATTACGAGAGCCAGACTAAGACCATGTTTGGAACATGGC
ATCAACAATGTAAC
Found at i:20970836 original size:144 final size:144
Alignment explanation
Indices: 20970515--20970897 Score: 370
Period size: 144 Copynumber: 2.7 Consensus size: 144
20970505 GCCACATTAT
* * * * * **
20970515 GAGAGCCAGTGTAAGACCAT-CTTTGGAACATGGCATC-GACAATATTATGAGAGCCAGTGTAAG
1 GAGAGCCAGTATAAGACCATGC-CTAGAACATGACATCGGCCACGATTATGAGAGCCAGTGTAAG
* * * **
20970578 ACCATGTCTGGGACATGGCATCGACCACA-TTATGAGAGCCAGTGTAAGACCATGTTTGGAACAT
65 ACCATGTCTGGAACATGGCATCG-GCA-ATTTACGAGAGCCAGACTAAGACCATGTTTGGAACAT
* *
20970642 GGCATCAGCAATGTAAT
128 GGCATCAACAATGTAAC
* * *
20970659 GAGAGCCAGTGTAAGACTATGCCTGGAACATGACATCGGCCAC-ATTATGAGAGCCAGTGTAAGA
1 GAGAGCCAGTATAAGACCATGCCTAGAACATGACATCGGCCACGATTATGAGAGCCAGTGTAAGA
* * *
20970723 CCATGTTTGGAACATGGCATCGGCAATGTTACGAGAGCCAGACTAAGACCATGTTTGGGACATTG
66 CCATGTCTGGAACATGGCATCGGCAAT-TTACGAGAGCCAGACTAAGACCATGTTTGGAACATGG
*
20970788 CATCAACATTG-AGAC
130 CATCAACAATGTA-AC
* * * * * *
20970803 GAGAGCTAGTATAAGACCATG-TTAGAGATATGACATTGGCCTCGA-CATGTA-AGCCAGTGTAA
1 GAGAGCCAGTATAAGACCATGCCTAGA-ACATGACATCGGCCACGATTATG-AGAGCCAGTGTAA
* *
20970865 GACCATGCCT-GAGACATGTCATCGGCAATTTAC
64 GACCATGTCTGGA-ACATGGCATCGGCAATTTAC
20970898 CCTCTTGTGT
Statistics
Matches: 202, Mismatches: 28, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
142 1 0.00
143 12 0.06
144 183 0.91
145 6 0.03
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (144 bp):
GAGAGCCAGTATAAGACCATGCCTAGAACATGACATCGGCCACGATTATGAGAGCCAGTGTAAGA
CCATGTCTGGAACATGGCATCGGCAATTTACGAGAGCCAGACTAAGACCATGTTTGGAACATGGC
ATCAACAATGTAAC
Found at i:20978427 original size:49 final size:48
Alignment explanation
Indices: 20978317--20978447 Score: 120
Period size: 49 Copynumber: 2.7 Consensus size: 48
20978307 TGGAATTATA
* * ****
20978317 AGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTTTG
1 AGAGCTAGTGTAAGACCATATTTGGGACATGGCATCAGCAATGAGACG
* ** *
20978365 AGAGCGAAAGTAAGACCATATCTTGGGACATGGCATC-GACATTGAGACG
1 AGAGCTAGTGTAAGACCATAT-TTGGGACATGGCATCAG-CAATGAGACG
* * *
20978414 AGAGCTAGTGTAAGACTATGTATGGGACATGGCA
1 AGAGCTAGTGTAAGACCATATTTGGGACATGGCA
20978448 ACTCAACATG
Statistics
Matches: 65, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
48 30 0.46
49 35 0.54
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (48 bp):
AGAGCTAGTGTAAGACCATATTTGGGACATGGCATCAGCAATGAGACG
Found at i:20984369 original size:26 final size:25
Alignment explanation
Indices: 20984320--20984374 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
20984310 AAATATGCAT
**
20984320 ACAATATTACAAAATATATGTAACTA
1 ACAATATTACAAAATATACATAAC-A
20984346 ACAATATTA-AAATATATACATAACA
1 ACAATATTACAAA-ATATACATAACA
20984371 ACAA
1 ACAA
20984375 AAGTATGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (25 bp):
ACAATATTACAAAATATACATAACA
Found at i:20986862 original size:2 final size:2
Alignment explanation
Indices: 20986855--20986887 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
20986845 TCGCTCTTTT
20986855 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20986888 TAGTTTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20993692 original size:17 final size:17
Alignment explanation
Indices: 20993670--20993710 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
20993660 GCTATTTGGT
20993670 AATTTTCCATTCTTCTC
1 AATTTTCCATTCTTCTC
*
20993687 AATTTTCGATTCTTCTC
1 AATTTTCCATTCTTCTC
20993704 AATTTTC
1 AATTTTC
20993711 ACTCGATCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.20, C:0.24, G:0.02, T:0.54
Consensus pattern (17 bp):
AATTTTCCATTCTTCTC
Found at i:20996091 original size:48 final size:48
Alignment explanation
Indices: 20996027--20996404 Score: 350
Period size: 48 Copynumber: 7.9 Consensus size: 48
20996017 TAAATTGCCA
* * * *
20996027 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAACGCCG
* * * * ***
20996075 ATGACATGTCCTAGACATGGTCTTAAACTAGCTCTCATAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAACGCCG
* * * *
20996123 TTGCCGTGTCCCAGACATGGTCTTACACTAGCAT-ACATATCGACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC-TCACATATCAACGCCG
* * * *
20996171 ATGCCATCTCCCAGACATGGTTTTACACTAGCGCACCTATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAACGCCG
* ** *
20996219 ATGCCATGTCCC-GAACATGGTCTTACACTAGCGCACATATTGACACCG
1 ATGCCATGTCCCAG-ACATGGTCTTACACTAGCTCACATATCAACGCCG
* * * *
20996267 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACCTATCAACACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAACGCCG
* * * * * **
20996315 ATGCCGTTTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAACGCCG
* * * *
20996363 ATACCATGTTCCAAACATGGTCTTACACTGGCAT-ACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC-TCACATATCA
20996405 CCCAATGTCA
Statistics
Matches: 269, Mismatches: 54, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
47 3 0.01
48 262 0.97
49 4 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAACGCCG
Found at i:20996287 original size:144 final size:143
Alignment explanation
Indices: 20996024--20996391 Score: 439
Period size: 144 Copynumber: 2.6 Consensus size: 143
20996014 AGGTAAATTG
* * * * *
20996024 CCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGACATGTCCTAG
1 CCAATGCCATCTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTCC-AA
* * * *** * *
20996089 ACATGGTCTTAAACTAGCTCTCATAATGTGGCCGTTGCCGTGTCCCAGACATGGTCTTACACTAG
65 ACATGGTCTTACACTAGCGCACATAATGACACCGATGCCATGTCCCAGACATGGTCTTACACTAG
* *
20996154 CATACATATCGACA
130 CACACATATCAACA
* * * * * * *
20996168 CCGATGCCATCTCCCAGACATGGTTTTACACTAGCGCACCTATCAACGCCGATGCCATGTCCCGA
1 CCAATGCCATCTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGT-CCAA
*
20996233 ACATGGTCTTACACTAGCGCACATATTGACACCGATGCCATGTCCCAGACATGGTCTTACACTAG
65 ACATGGTCTTACACTAGCGCACATAATGACACCGATGCCATGTCCCAGACATGGTCTTACACTAG
*
20996298 CACACCTATCAACA
130 CACACATATCAACA
* * * * * *
20996312 CCAATGCCGTTTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATACCATGTTCCAA
1 CCAATGCCATCTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATG-TCCAA
20996377 ACATGGTCTTACACT
65 ACATGGTCTTACACT
20996392 GGCATACATA
Statistics
Matches: 186, Mismatches: 36, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
144 183 0.98
145 3 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (143 bp):
CCAATGCCATCTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTCCAAA
CATGGTCTTACACTAGCGCACATAATGACACCGATGCCATGTCCCAGACATGGTCTTACACTAGC
ACACATATCAACA
Found at i:21003919 original size:48 final size:48
Alignment explanation
Indices: 21003865--21004132 Score: 211
Period size: 48 Copynumber: 5.6 Consensus size: 48
21003855 AAATTGCTGG
* * *
21003865 TGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAATGTCGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCGCTCATATCAATGTCGA
* **
21003913 TGCCATGTCCCAGACATGGTCTTACA-TTG-GCTC-TCAT-AATGTGGCCTT
1 TGCCATGTCCCAGACATGGTCTTACACTAGCGCTCAT-ATCAATGT---CGA
* * * * * * * * *
21003961 TACCGTGTCCCAGACATAGTCCTGCACTAGCGCACATATCGACGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCGCTCATATCAATGTCGA
* * * *
21004009 TACCATGTCCCAGACATGATCTTACACTAGCGCACTTATCAATGTCGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCGCTCATATCAATGTCGA
* * * * * * * *
21004057 TGCCATGTCCCGGACATGGTCTTACAATGGCTCTCATAACATTGCCAA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCGCTCATATCAATGTCGA
* *
21004105 TGCCATGTTCCAAACATGGTCTTACACT
1 TGCCATGTCCCAGACATGGTCTTACACT
21004133 GGCACACATA
Statistics
Matches: 170, Mismatches: 42, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
45 6 0.04
46 4 0.02
47 2 0.01
48 148 0.87
49 2 0.01
50 5 0.03
51 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTAGCGCTCATATCAATGTCGA
Found at i:21004141 original size:144 final size:144
Alignment explanation
Indices: 21003867--21004144 Score: 367
Period size: 144 Copynumber: 1.9 Consensus size: 144
21003857 ATTGCTGGTG
* * *
21003867 CCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAATGTCGATGCCATGTCCCAGACATGG
1 CCATGTCCCAGACATGATCTTACACTAGCACACGTATCAATGTCGATGCCATGTCCCAGACATGG
* ** ** * * * *
21003932 TCTTACATTGGCTCTCATAATGTGGCCTTTACCGTGTCCCAGACATAGTCCTGCACTAGCGCACA
66 TCTTACAATGGCTCTCATAACATGGCCAATACCATGTCCCAAACATAGTCCTACACTAGCACACA
21003997 TATCGACGCCGATA
131 TATCGACGCCGATA
* * *
21004011 CCATGTCCCAGACATGATCTTACACTAGCGCACTTATCAATGTCGATGCCATGTCCCGGACATGG
1 CCATGTCCCAGACATGATCTTACACTAGCACACGTATCAATGTCGATGCCATGTCCCAGACATGG
* * * * * *
21004076 TCTTACAATGGCTCTCATAACATTGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCACACA
66 TCTTACAATGGCTCTCATAACATGGCCAATACCATGTCCCAAACATAGTCCTACACTAGCACACA
21004141 TATC
131 TATC
21004145 ACCCAATGTC
Statistics
Matches: 113, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
144 113 1.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (144 bp):
CCATGTCCCAGACATGATCTTACACTAGCACACGTATCAATGTCGATGCCATGTCCCAGACATGG
TCTTACAATGGCTCTCATAACATGGCCAATACCATGTCCCAAACATAGTCCTACACTAGCACACA
TATCGACGCCGATA
Found at i:21007677 original size:29 final size:30
Alignment explanation
Indices: 21007617--21007678 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
21007607 GATTTAATAT
*
21007617 CTATTATTTTACCAAACGCAACAATTACCA
1 CTATTATTTTACCAAACGCAACAACTACCA
* * *
21007647 CTATT-TTTTACTAAACGCAACTACTATCA
1 CTATTATTTTACCAAACGCAACAACTACCA
21007676 CTA
1 CTA
21007679 CTCTGATGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 23 0.82
30 5 0.18
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.34
Consensus pattern (30 bp):
CTATTATTTTACCAAACGCAACAACTACCA
Found at i:21014194 original size:30 final size:31
Alignment explanation
Indices: 21014132--21014195 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
21014122 AGTTTGAAAA
* *
21014132 TTTCCTAATTACAATTGAACTATAGCTTTCT
1 TTTCCAAATTACAATTGAACTATAGCTCTCT
* * *
21014163 TTTCCAAATTA-AATTGAATTTTTGCTCTCT
1 TTTCCAAATTACAATTGAACTATAGCTCTCT
21014193 TTT
1 TTT
21014196 TCCCTATTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 18 0.64
31 10 0.36
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.50
Consensus pattern (31 bp):
TTTCCAAATTACAATTGAACTATAGCTCTCT
Found at i:21017854 original size:26 final size:26
Alignment explanation
Indices: 21017818--21017899 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
21017808 TAAAATTCCA
21017818 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21017844 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21017870 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21017896 ATCA
1 ATCA
21017900 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:21021055 original size:25 final size:25
Alignment explanation
Indices: 21020997--21021049 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
21020987 AAATATTTTC
** *
21020997 TAAAATTAAATATTTTAATTAATAA
1 TAAAATTAAATATAATAATAAATAA
21021022 TAAAATTAAATATAATAATAAATAA
1 TAAAATTAAATATAATAATAAATAA
21021047 TAA
1 TAA
21021050 GTTTAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
TAAAATTAAATATAATAATAAATAA
Found at i:21022595 original size:10 final size:10
Alignment explanation
Indices: 21022582--21022651 Score: 51
Period size: 10 Copynumber: 7.0 Consensus size: 10
21022572 TTTAAAAAAA
21022582 ATAAAATATT
1 ATAAAATATT
21022592 ATAAAATATT
1 ATAAAATATT
*
21022602 ATAAAGATCATG
1 ATAAA-AT-ATT
21022614 A-AAAATA-T
1 ATAAAATATT
21022622 A-AAAAT-TT
1 ATAAAATATT
21022630 -TAAAATTCATT
1 ATAAAA-T-ATT
21022641 ATCAAAATATT
1 AT-AAAATATT
21022652 GAGAAGAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
8 11 0.22
9 2 0.04
10 17 0.35
11 10 0.20
12 5 0.10
13 4 0.08
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.36
Consensus pattern (10 bp):
ATAAAATATT
Found at i:21027247 original size:154 final size:154
Alignment explanation
Indices: 21026967--21027274 Score: 562
Period size: 154 Copynumber: 2.0 Consensus size: 154
21026957 AATCATCCCC
21026967 ATTCTGCAGAAAATAAGATAAAATAAAAACTATACAACACAGAATGCTATCAAAGGTATCAATGT
1 ATTCTGCAGAAAATAAGATAAAATAAAAACTATACAACACAGAATGCTATCAAAGGTATCAATGT
* * * *
21027032 CTGCTACCATATAAAATGACAGTTGATGAAGGAAGCAAATTTTTTCTTTGAAGAATGTAAAATTC
66 CTACTACCATATAAAATGACAGTTGATGAAGGAAGCAAACTTTTTCTTTGAAAAACGTAAAATTC
21027097 AAGCCTAAAATCAGTGAAATCAAT
131 AAGCCTAAAATCAGTGAAATCAAT
* *
21027121 ATTCTGCAGAATATAAGATAAAATAAAAACTATACACCACAGAATGCTATCAAAGGTATCAATGT
1 ATTCTGCAGAAAATAAGATAAAATAAAAACTATACAACACAGAATGCTATCAAAGGTATCAATGT
21027186 CTACTACCATATAAAATGACAGTTGATGAAGGAAGCAAACTTTTTCTTTGAAAAACGTAAAATTC
66 CTACTACCATATAAAATGACAGTTGATGAAGGAAGCAAACTTTTTCTTTGAAAAACGTAAAATTC
21027251 AAGCCTAAAATCAGTGAAATCAAT
131 AAGCCTAAAATCAGTGAAATCAAT
21027275 CTATCTTACT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
154 148 1.00
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (154 bp):
ATTCTGCAGAAAATAAGATAAAATAAAAACTATACAACACAGAATGCTATCAAAGGTATCAATGT
CTACTACCATATAAAATGACAGTTGATGAAGGAAGCAAACTTTTTCTTTGAAAAACGTAAAATTC
AAGCCTAAAATCAGTGAAATCAAT
Found at i:21028325 original size:8 final size:8
Alignment explanation
Indices: 21028314--21028395 Score: 94
Period size: 8 Copynumber: 9.9 Consensus size: 8
21028304 ATATTAAATA
21028314 TTAAATTT
1 TTAAATTT
*
21028322 TTAAGTTT
1 TTAAATTT
*
21028330 TTAAGTTT
1 TTAAATTT
21028338 TT-AATTT
1 TTAAATTT
21028345 TTAAATTT
1 TTAAATTT
21028353 TTAAATTT
1 TTAAATTT
*
21028361 TTAATTTTT
1 TTAA-ATTT
21028370 TTAAAGATTT
1 TT-AA-ATTT
21028380 TTATAATTT
1 TTA-AATTT
21028389 TTAAATT
1 TTAAATT
21028396 AACATATAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
7 6 0.09
8 38 0.58
9 13 0.20
10 8 0.12
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (8 bp):
TTAAATTT
Found at i:21028333 original size:23 final size:23
Alignment explanation
Indices: 21028314--21028395 Score: 76
Period size: 23 Copynumber: 3.3 Consensus size: 23
21028304 ATATTAAATA
*
21028314 TTAAATTTTTAAGTTTTTAAGTTT
1 TTAAATTTTTAA-TTTTTAAATTT
21028338 TT-AATTTTTAAATTTTTAAATTT
1 TTAAATTTTT-AATTTTTAAATTT
*
21028361 TTAATTTTTTTAAAGATTTTTATAATTT
1 TTAA-ATTTTT--A-ATTTTTA-AATTT
21028389 TTAAATT
1 TTAAATT
21028396 AACATATAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
23 19 0.39
24 5 0.10
25 5 0.10
26 2 0.04
27 9 0.18
28 9 0.18
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TTAAATTTTTAATTTTTAAATTT
Found at i:21028338 original size:16 final size:15
Alignment explanation
Indices: 21028314--21028369 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
21028304 ATATTAAATA
21028314 TTAAATTTTTAAGTTT
1 TTAAATTTTTAA-TTT
*
21028330 TTAAGTTTTTAATTT
1 TTAAATTTTTAATTT
21028345 TTAAATTTTTAAATTT
1 TTAAATTTTT-AATTT
21028361 TT-AATTTTT
1 TTAAATTTTT
21028370 TTAAAGATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
15 19 0.51
16 18 0.49
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (15 bp):
TTAAATTTTTAATTT
Found at i:21028601 original size:28 final size:28
Alignment explanation
Indices: 21028544--21028603 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
21028534 ATTTTTAGAT
* * * *
21028544 TTTAGGGTTTATGATTTATGGGTTATAG
1 TTTAAGGTTTAGGATTTATGGATTACAG
21028572 TTTAAGGTTTAGGATTTAT-GATCTACAG
1 TTTAAGGTTTAGGATTTATGGAT-TACAG
21028600 TTTA
1 TTTA
21028604 TGGGTTTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 2 0.07
28 25 0.93
ACGTcount: A:0.25, C:0.03, G:0.23, T:0.48
Consensus pattern (28 bp):
TTTAAGGTTTAGGATTTATGGATTACAG
Found at i:21028646 original size:14 final size:14
Alignment explanation
Indices: 21028618--21028679 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
21028608 TTTAAAAGTT
*
21028618 AGTTTTAGGGCTTGG
1 AGTTTAAGGG-TTGG
*
21028633 AGTTTAAGGATTGG
1 AGTTTAAGGGTTGG
* *
21028647 GGTTT-GGGTGTTGG
1 AGTTTAAGG-GTTGG
*
21028661 GGTTTAAGGGTTGG
1 AGTTTAAGGGTTGG
21028675 AGTTT
1 AGTTT
21028680 TAAAGGTTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
13 2 0.05
14 26 0.68
15 10 0.26
ACGTcount: A:0.15, C:0.02, G:0.44, T:0.40
Consensus pattern (14 bp):
AGTTTAAGGGTTGG
Found at i:21028768 original size:22 final size:22
Alignment explanation
Indices: 21028678--21028768 Score: 64
Period size: 22 Copynumber: 4.2 Consensus size: 22
21028668 GGGTTGGAGT
*
21028678 TTTAAAGGTTTATGATTTGAGA
1 TTTAAGGGTTTATGATTTGAGA
* * *
21028700 TTT-AGGGTTTAGGGTGTTGGGA
1 TTTAAGGGTTTATGAT-TTGAGA
* * *
21028722 -TGAA-GGTTTATCG-TTTATAGT
1 TTTAAGGGTTTAT-GATTT-GAGA
21028743 TTTAAGGGTTTATGATTTGAGA
1 TTTAAGGGTTTATGATTTGAGA
21028765 TTTA
1 TTTA
21028769 CGGTCTGGTG
Statistics
Matches: 50, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
20 2 0.04
21 18 0.36
22 20 0.40
23 10 0.20
ACGTcount: A:0.24, C:0.01, G:0.29, T:0.46
Consensus pattern (22 bp):
TTTAAGGGTTTATGATTTGAGA
Found at i:21028821 original size:66 final size:66
Alignment explanation
Indices: 21028734--21028858 Score: 180
Period size: 66 Copynumber: 1.9 Consensus size: 66
21028724 AAGGTTTATC
** * * *
21028734 GTTTATAGTTTTAAGGGTTTATGATTTGAGATTTACGG-TCTGGTGTTTAAAGAGTTATTAATTA
1 GTTTATAGTTTTAAAAGTTTATGATTAGAGATTTA-GGATCTGGGGGTTAAAGAGTTATTAATTA
21028798 GT
65 GT
*
21028800 GTTTATAGTTTTAAAAGTTTATGATTAGAGATTTAGGATCTGGGGGTTAAAGGGTTATT
1 GTTTATAGTTTTAAAAGTTTATGATTAGAGATTTAGGATCTGGGGGTTAAAGAGTTATT
21028859 GATTTAAGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
65 2 0.04
66 50 0.96
ACGTcount: A:0.27, C:0.02, G:0.26, T:0.45
Consensus pattern (66 bp):
GTTTATAGTTTTAAAAGTTTATGATTAGAGATTTAGGATCTGGGGGTTAAAGAGTTATTAATTAG
T
Found at i:21029478 original size:40 final size:40
Alignment explanation
Indices: 21029428--21029619 Score: 267
Period size: 41 Copynumber: 4.7 Consensus size: 40
21029418 GGCATTTTTA
21029428 AAAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTT
1 AAAAA-CGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTT
*
21029469 AAAAACGCCGCTAATGCTCAGATCTTTAGCTGCGCTTTCTT
1 AAAAACGCCGCTAATGCTC-GATCTTTAGCGGCGCTTTCTT
* * * * *
21029510 AAAAACGTCGCTAGTGCTCAATCTTTAGCAGCGCTTTCTC
1 AAAAACGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTT
* *
21029550 AAAAACACCGCTAATGCTTAGATCTTTAGCGGCGCTTTCTT
1 AAAAACGCCGCTAATGC-TCGATCTTTAGCGGCGCTTTCTT
* *
21029591 AAAAACGCCGCTAATACTCAATCTTTAGC
1 AAAAACGCCGCTAATGCTCGATCTTTAGC
21029620 AGCTTTTTTT
Statistics
Matches: 132, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
40 56 0.42
41 76 0.58
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30
Consensus pattern (40 bp):
AAAAACGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTT
Found at i:21029544 original size:81 final size:81
Alignment explanation
Indices: 21029428--21029654 Score: 303
Period size: 81 Copynumber: 2.8 Consensus size: 81
21029418 GGCATTTTTA
* *
21029428 AAAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATC
1 AAAAA-CGCCGCTAATGCTCAATCTTTAGCAGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATC
*
21029493 TTTAGCTGCGCTTTCTT
65 TTTAGCGGCGCTTTCTT
* * * * *
21029510 AAAAACGTCGCTAGTGCTCAATCTTTAGCAGCGCTTTCTCAAAAACACCGCTAATGCTTAGATCT
1 AAAAACGCCGCTAATGCTCAATCTTTAGCAGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATCT
21029575 TTAGCGGCGCTTTCTT
66 TTAGCGGCGCTTTCTT
* ** * * * *
21029591 AAAAACGCCGCTAATACTCAATCTTTAGCAGCTTTTTTTTAAAAGCGCCACTAATACTCA-ATCT
1 AAAAACGCCGCTAATGCTCAATCTTTAGCAGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATCT
21029655 ATTCAATTTT
Statistics
Matches: 125, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
80 4 0.03
81 116 0.93
82 5 0.04
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (81 bp):
AAAAACGCCGCTAATGCTCAATCTTTAGCAGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATCT
TTAGCGGCGCTTTCTT
Found at i:21029633 original size:40 final size:40
Alignment explanation
Indices: 21029428--21029654 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
21029418 GGCATTTTTA
* *
21029428 AAAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTT
1 AAAAA-CGCCGCTAATGCTCAATCTTTAGCAGCGCTTTCTT
*
21029469 AAAAACGCCGCTAATGCTCAGATCTTTAGCTGCGCTTTCTT
1 AAAAACGCCGCTAATGCTCA-ATCTTTAGCAGCGCTTTCTT
* * *
21029510 AAAAACGTCGCTAGTGCTCAATCTTTAGCAGCGCTTTCTC
1 AAAAACGCCGCTAATGCTCAATCTTTAGCAGCGCTTTCTT
* * *
21029550 AAAAACACCGCTAATGCTTAGATCTTTAGCGGCGCTTTCTT
1 AAAAACGCCGCTAATGCTCA-ATCTTTAGCAGCGCTTTCTT
* ** *
21029591 AAAAACGCCGCTAATACTCAATCTTTAGCAGCTTTTTTTT
1 AAAAACGCCGCTAATGCTCAATCTTTAGCAGCGCTTTCTT
* * *
21029631 AAAAGCGCCACTAATACTCAATCT
1 AAAAACGCCGCTAATGCTCAATCT
21029655 ATTCAATTTT
Statistics
Matches: 163, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
40 86 0.53
41 77 0.47
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (40 bp):
AAAAACGCCGCTAATGCTCAATCTTTAGCAGCGCTTTCTT
Found at i:21030539 original size:2 final size:2
Alignment explanation
Indices: 21030534--21030563 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
21030524 GGGTACATTG
21030534 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
21030564 TTTCTTTGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:21031306 original size:26 final size:24
Alignment explanation
Indices: 21031276--21031325 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
21031266 AAATAAAAAA
*
21031276 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
21031302 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
21031326 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:21031345 original size:21 final size:21
Alignment explanation
Indices: 21031296--21031354 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
21031286 ATAATAAATC
*
21031296 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
21031316 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
21031338 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
21031355 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:21034656 original size:25 final size:25
Alignment explanation
Indices: 21034628--21034679 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
21034618 CTCAACTTAC
21034628 ATGAGC-TTCCCATTATTCAGCTCGT
1 ATGAGCTTTCCCA-TATTCAGCTCGT
*
21034653 ATGAGCTTTCCGATATTCAGCTCGT
1 ATGAGCTTTCCCATATTCAGCTCGT
21034678 AT
1 AT
21034680 TAGCATACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (25 bp):
ATGAGCTTTCCCATATTCAGCTCGT
Found at i:21034853 original size:37 final size:38
Alignment explanation
Indices: 21034803--21034884 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 38
21034793 ATATGAGTTC
21034803 AATATGAACTATTAATGGTATTTACATGAAATACATG-
1 AATATGAACTATTAATGGTATTTACATGAAATACATGA
* *
21034840 AATATGAACTATTACTGGTATTTACATGATATACATGA
1 AATATGAACTATTAATGGTATTTACATGAAATACATGA
21034878 AATATGA
1 AATATGA
21034885 TTATTTGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
37 35 0.83
38 7 0.17
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (38 bp):
AATATGAACTATTAATGGTATTTACATGAAATACATGA
Found at i:21053387 original size:15 final size:15
Alignment explanation
Indices: 21053353--21053383 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
21053343 TGCCACTGTC
21053353 TTATTTTTTATATAT
1 TTATTTTTTATATAT
21053368 TTATTTTTTA-ATAT
1 TTATTTTTTATATAT
21053382 TT
1 TT
21053384 TATTGTATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
TTATTTTTTATATAT
Found at i:21056502 original size:26 final size:25
Alignment explanation
Indices: 21056468--21056521 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
21056458 TGTGTAACGA
*
21056468 AATTATAATATTAAACATTAACATTT
1 AATTATAATATTAAACACTAA-ATTT
* *
21056494 AATTCTAATATTAAATACTAAATTT
1 AATTATAATATTAAACACTAAATTT
21056519 AAT
1 AAT
21056522 CCTCAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (25 bp):
AATTATAATATTAAACACTAAATTT
Found at i:21058689 original size:19 final size:19
Alignment explanation
Indices: 21058665--21058702 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
21058655 GAAATGAATA
*
21058665 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
21058684 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
21058703 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:21059049 original size:13 final size:13
Alignment explanation
Indices: 21059031--21059055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21059021 ATCGTAAAAT
21059031 AAATAAAAAATAA
1 AAATAAAAAATAA
21059044 AAATAAAAAATA
1 AAATAAAAAATA
21059056 CATAAAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAATAAAAAATAA
Found at i:21059620 original size:19 final size:20
Alignment explanation
Indices: 21059587--21059626 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
21059577 GTATATATAT
21059587 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
21059606 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
21059626 A
1 A
21059627 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:21060025 original size:44 final size:44
Alignment explanation
Indices: 21059965--21061233 Score: 1724
Period size: 44 Copynumber: 29.4 Consensus size: 44
21059955 CACCGTCTAA
* *
21059965 TACAGAGACGTCAAATCCGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
21060009 TACAGAGACACCAAATCTGTTATCTTTGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
21060053 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * * * *
21060097 TACGGAGATGCCAAATATGTTATCTTCGATTTGCTTTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
21060141 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
21060185 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
21060225 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
21060269 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
21060313 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
21060353 TACAGAAATGCCAAATC----ATCTTCGATCTGCTCTCCGCCTC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
21060393 TACAGAGACGCCAAATCTGTTATCTTCTATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
** * *
21060437 TACAGAGACGCCAAATCTGTTATCTTATATCTACTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
21060481 TACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * **
21060525 TACAGAGACGCCAAATTTGCTATCTTCGATCTGCTCTCTACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
21060569 TACCGAGATGCCAAATCTGTTATCTTCGATATGTTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
21060613 TACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
21060657 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
21060701 TATAGAGACTCTAAATCTGTTATCTTCAATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * * **
21060745 TACAGAGATGTCAAATCTGTTATCTTCAATCTGCTTTCCGCAAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
21060789 TACAGAGATGCCAAATC----ATCTTCAATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * * * **
21060829 TATAGAAATGTCAAATC----ATCTTCGATCTACTCTTTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
21060869 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
21060913 TACAGAGACGCCAAATCTGTTATCTGT-GATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCT-TCGATCTGCTCTCCGCCGC
*
21060957 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
21061001 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
** * *
21061041 TACAGAGATACCAAATCTGTTATCTTCAATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
21061085 TACAGAGACGCCAAATCTGTTATCTTTGACCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
21061129 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
21061173 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
21061217 TACAGAGACGCCAAATC
1 TACAGAGACGCCAAATC
21061234 ATCTTGGATT
Statistics
Matches: 1096, Mismatches: 111, Indels: 36
0.88 0.09 0.03
Matches are distributed among these distances:
40 216 0.20
43 1 0.00
44 878 0.80
45 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:21061132 original size:604 final size:598
Alignment explanation
Indices: 21059965--21061233 Score: 1846
Period size: 604 Copynumber: 2.1 Consensus size: 598
21059955 CACCGTCTAA
* *
21059965 TACAGAGACGTCAAATCCGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTT
*
21060030 ATCTTTGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
66 ATCTTCGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * * *
21060095 GCTACGGAGATGCCAAATATGTTATCTTCGATTTGCTTTCTGCCGCTACAGAGACGCCAAATCTG
131 GCTACAGAGATGCCAAATATGTTATCTTCAATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTG
* * ** * *
21060160 TTATCTTCGATCTGCTCTCTGCCGCTACAGAGATGCCAAATCATCTTCGATCTGCTCTTCGCCGC
196 TTATCTTCAATCTGCTCTCCGCAACTACAGAGATGCCAAATCATCTTCAATCTGCTCTCCGCCGC
* * *
21060225 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGCTACAGAGACGCCAAATCTGTT
261 TACAGAAACGCCAAATC---TATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* *
21060290 ATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCGATCTGCTCTTCGCCGCTA
323 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCATCTTCGATCTGCTCTCCGCCGCTA
*
21060355 CAGAAATGCCAAATCATCTTCGATCTGCTCTCCGCCTCTACAGAGACGCCAAATCTGTTATCTTC
388 CAGAAATGCCAAATCATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC---TATCTTC
* *
21060420 TATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTATATCTACTCTCTGCCGCTACA
450 GATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTTATCTTATATCTACTCTCTGCCGCTACA
* * *
21060485 AAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGCTACAGAGACGCCAAATTTGCTATCT
515 AAGACGCCAAATCTGTTATCTTCGACCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCT
*
21060550 TCGATCTGCTCTCTACCGC
580 TCGATCTGCTCTCCACCGC
* * * *
21060569 TACCGAGATGCCAAATCTGTTATCTTCGATATGTTCTCCGCCGCTACAGAGACACCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTT
**
21060634 ATCTTCGATCTGCTCTCCGTCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
66 ATCTTCGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * * *
21060699 GCTATAGAGACT-CTAAATCTGTTATCTTCAATCTGCTCTCCGCCGCTACAGAGATGTCAAATCT
131 GCTACAGAGA-TGCCAAATATGTTATCTTCAATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
*
21060763 GTTATCTTCAATCTGCTTTCCGCAACTACAGAGATGCCAAATCATCTTCAATCTGCTCTCCGCCG
195 GTTATCTTCAATCTGCTCTCCGCAACTACAGAGATGCCAAATCATCTTCAATCTGCTCTCCGCCG
* * * ** *
21060828 CTATAGAAATGTCAAATC-ATCTTCGATCTACTCTTTGCCGCTACAGAGATGCCAAATCTGTTAT
260 CTACAGAAACGCCAAATCTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTTAT
21060892 CTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTGT-GATCTGCTCTCCGCCG
325 CTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC----ATCT-TCGATCTGCTCTCCGCCG
* *
21060956 CTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC-AT
385 CTACAGAAATGCCAAATC----ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTAT
* * *
21061020 CTTCGATCTGCTCTCTGCCGCTACAGAGATACCAAATCTGTTATCTTCA-ATCTGCTCTCTGCCG
446 CTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTTATCTT-ATATCTACTCTCTGCCG
* * * *
21061084 CTACAGAGACGCCAAATCTGTTATCTTTGACCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGT
510 CTACAAAGACGCCAAATCTGTTATCTTCGACCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGC
*
21061149 TATCTTCGATCTGCTCTCCGCCGC
575 TATCTTCGATCTGCTCTCCACCGC
* *
21061173 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATC
21061234 ATCTTGGATT
Statistics
Matches: 594, Mismatches: 60, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
600 78 0.13
604 475 0.80
605 3 0.01
608 38 0.06
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (598 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTT
ATCTTCGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
GCTACAGAGATGCCAAATATGTTATCTTCAATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTG
TTATCTTCAATCTGCTCTCCGCAACTACAGAGATGCCAAATCATCTTCAATCTGCTCTCCGCCGC
TACAGAAACGCCAAATCTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTTATC
TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCATCTTCGATCTGCTCTCCGCCGCTACAG
AAATGCCAAATCATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATCTTCGATCTG
CTCTCCGCCGCTACAGAGACACCAAATCTGTTATCTTATATCTACTCTCTGCCGCTACAAAGACG
CCAAATCTGTTATCTTCGACCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATC
TGCTCTCCACCGC
Found at i:21061312 original size:88 final size:88
Alignment explanation
Indices: 21061197--21061418 Score: 320
Period size: 88 Copynumber: 2.5 Consensus size: 88
21061187 ATCTGTTATC
* * * * * *
21061197 TTCGATCTGCTCTCTGCC-GCTACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAACAC
1 TTCGATCTGCTCCCTGCCTGATAAAGAGATGCCAAATCATCTTGGATCTACTTCAACGTAAACAC
*
21061261 ATGAAAGCCAAATCAGCTATGTA
66 ATGAAAGCCAAATCAACTATGTA
* *
21061284 TTCGATCTGCTCCCCGCCTGATATAGAGATGCCAAATCATCTTGGATCTACTTCAACGTAAACAC
1 TTCGATCTGCTCCCTGCCTGATAAAGAGATGCCAAATCATCTTGGATCTACTTCAACGTAAACAC
* *
21061349 GTGAAAGCCAAATCAACTATGTC
66 ATGAAAGCCAAATCAACTATGTA
* *
21061372 TTCGATCTACTCCCTGCCTGATAAAGAAATGCCAAATCATCTTGGAT
1 TTCGATCTGCTCCCTGCCTGATAAAGAGATGCCAAATCATCTTGGAT
21061419 ATCTTCAGCT
Statistics
Matches: 120, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
87 16 0.13
88 104 0.87
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (88 bp):
TTCGATCTGCTCCCTGCCTGATAAAGAGATGCCAAATCATCTTGGATCTACTTCAACGTAAACAC
ATGAAAGCCAAATCAACTATGTA
Found at i:21061314 original size:516 final size:504
Alignment explanation
Indices: 21059985--21061326 Score: 1745
Period size: 516 Copynumber: 2.6 Consensus size: 504
21059975 TCAAATCCGT
* *
21059985 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTTATCTTTGATCTGCTCTCCAC
1 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCTAC
* * *
21060050 CGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACGGAGATGCCAAATAT
66 CGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
* * *
21060115 GTTATCTTCGATTTGCTTTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCT
131 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCT
* * *
21060180 GCCGCTACAGAGATGCCAAATCATCTTCGATCTGCTCTTCGCCGCTACAGAG-ACGCCAAATCTG
196 GCCGCTACAGAGACGCCAAATCATCTTCGATCTG--CTT--CCG-TACACAGAAAGCCAAATCTG
* * *
21060244 TTATCTTCGATCTGCTCTCCGTCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCG
256 TTATCTTCGATCTGCTCTCCG-CGATACAGAGATGCCAAATC----ATCTTCAATCTGCTCTCCG
* *
21060309 CCGCTACAGAGATGCCAAATCATCTTCGATCTGCTCTTCGCCGCTACAGAAATGCCAAATCATCT
316 CCGCTACAGAAATGCCAAATCATCTTCGATCTACTCTTCGCCGCTACAGAAATGCCAAATCATCT
* *
21060374 TCGATCTGCTCTCCGCCTCTACAGAGACGCCAAATCTGTTATCTTCTATCTGCTCTCCGCCGCTA
381 TCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTA
* *
21060439 CAGAGACGCCAAATCTGTTATCTTATATCTACTCTCTGCCGCTACAAAGACGCCAAATC
446 CAGAGACGCCAAATCTGTTATCTTAGATCTACTCTCCGCCGCTACAAAGACGCCAAATC
* * * *
21060498 TGTTATCTTCGATCTGCTCTCCGTCGCTACAGAGACGCCAAATTTGCTATCTTCGATCTGCTCTC
1 ---TATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTC
* * * *
21060563 TACCGCTACCGAGATGCCAAATCTGTTATCTTCGATATGTTCTCCGCCGCTACAGAGACACCAAA
63 TACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAA
* *
21060628 TCTGTTATCTTCGATCTGCTCTCCGTCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTC
128 TCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC
* * * * * ** * *
21060693 TCCGCCGCTATAGAGACTCTAAATCTGTTATCTTCAATCTGCTCTCCGCCGCTACAGAGATGTCA
193 TCTGCCGCTACAGAGACGCCAAATC----ATCTTCGATCTGCT-TCCG-TAC-ACAGA-AAGCCA
* * *
21060758 AATCTGTTATCTTCAATCTGCTTTCCGCAACTACAGAGATGCCAAATCATCTTCAATCTGCTCTC
250 AATCTGTTATCTTCGATCTGCTCTCCGCGA-TACAGAGATGCCAAATCATCTTCAATCTGCTCTC
* * * *
21060823 CGCCGCTATAGAAATGTCAAATCATCTTCGATCTACTCTTTGCCGCTACAGAGATGCCAAATCTG
314 CGCCGCTACAGAAATGCCAAATCATCTTCGATCTACTCTTCGCCGCTACAGAAATGCCAAATC--
21060888 TTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTGT-GATCTGCTCTCC
377 --ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCT-TCGATCTGCTCTCC
* * * * *
21060952 GCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAAT
439 GCCGCTACAGAGACGCCAAATCTGTTATCTTAGATCTACTCTCCGCCGCTACAAAGACGCCAAAT
21061017 C
504 C
* * * *
21061018 -ATCTTCGATCTGCTCTCTGCCGCTACAGAGATACCAAATCTGTTATCTTCAATCTGCTCTCTGC
1 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCTAC
* * * *
21061082 CGCTACAGAGACGCCAAATCTGTTATCTTTGACCTGCTCTCTGCCGCTACAGAGACGCCAAATCT
66 CGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
21061147 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCT
131 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCT
* * *
21061212 GCCGCTACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAG
196 GCCGCTACAGAGACGCCAAATCATCTTCGATCTGCTTC--CGT--ACACA-GAAAGCCAAATCTG
* * * *
21061277 CTATGTATTCGATCTGCTCCCCGCCTGATATAGAGATGCCAAATCATCTT
256 -T-TATCTTCGATCTGCTCTCCG-C-GATACAGAGATGCCAAATCATCTT
21061327 GGATCTACTT
Statistics
Matches: 716, Mismatches: 87, Indels: 46
0.84 0.10 0.05
Matches are distributed among these distances:
511 2 0.00
512 11 0.02
513 14 0.02
514 4 0.01
515 15 0.02
516 483 0.67
517 6 0.01
518 5 0.01
519 2 0.00
520 173 0.24
521 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.30
Consensus pattern (504 bp):
TATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCTAC
CGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCT
GCCGCTACAGAGACGCCAAATCATCTTCGATCTGCTTCCGTACACAGAAAGCCAAATCTGTTATC
TTCGATCTGCTCTCCGCGATACAGAGATGCCAAATCATCTTCAATCTGCTCTCCGCCGCTACAGA
AATGCCAAATCATCTTCGATCTACTCTTCGCCGCTACAGAAATGCCAAATCATCTTCGATCTGCT
CTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCC
AAATCTGTTATCTTAGATCTACTCTCCGCCGCTACAAAGACGCCAAATC
Found at i:21061646 original size:61 final size:64
Alignment explanation
Indices: 21061528--21061650 Score: 191
Period size: 61 Copynumber: 2.0 Consensus size: 64
21061518 TCATGTATCC
21061528 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
21061592 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGTTCCTAACTAAATG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATG
21061651 AATGGTTATG
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 29 0.52
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.36
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:21073552 original size:19 final size:19
Alignment explanation
Indices: 21073528--21073565 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
21073518 GAAATGAATA
*
21073528 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
21073547 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
21073566 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:21074482 original size:19 final size:20
Alignment explanation
Indices: 21074449--21074488 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
21074439 GTATATATAT
21074449 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
21074468 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
21074488 A
1 A
21074489 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:21076336 original size:23 final size:25
Alignment explanation
Indices: 21076290--21076347 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
21076280 TGACTTTTTT
21076290 AAAAAAATTAAAAATTAAATTTAA-C
1 AAAAAAA-TAAAAATTAAATTTAAGC
* *
21076315 TAAAAAATAAGAATTAAA-TTAAGC
1 AAAAAAATAAAAATTAAATTTAAGC
21076339 AAAAAAATA
1 AAAAAAATA
21076348 TATACATTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.14
24 19 0.66
25 6 0.21
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.24
Consensus pattern (25 bp):
AAAAAAATAAAAATTAAATTTAAGC
Found at i:21083576 original size:23 final size:23
Alignment explanation
Indices: 21083546--21083597 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
21083536 GAACTCACCA
*
21083546 CAGCTCGTATGAGCTTACTGATT
1 CAGCTCGTAAGAGCTTACTGATT
*
21083569 CAGCTCGTAAGAGCTTACTGTTT
1 CAGCTCGTAAGAGCTTACTGATT
21083592 CAGCTC
1 CAGCTC
21083598 ATTGGAGCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (23 bp):
CAGCTCGTAAGAGCTTACTGATT
Found at i:21083605 original size:23 final size:23
Alignment explanation
Indices: 21083546--21083609 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 23
21083536 GAACTCACCA
* *
21083546 CAGCTCGTATGAGCTTACTGATT
1 CAGCTCATAAGAGCTTACTGATT
* *
21083569 CAGCTCGTAAGAGCTTACTGTTT
1 CAGCTCATAAGAGCTTACTGATT
**
21083592 CAGCTCATTGGAGCTTAC
1 CAGCTCATAAGAGCTTAC
21083610 CTTTTAGCTC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (23 bp):
CAGCTCATAAGAGCTTACTGATT
Found at i:21091182 original size:20 final size:20
Alignment explanation
Indices: 21091142--21091215 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
21091132 AAACTTTTAT
*
21091142 AAAAACTTATAAAATTCATA
1 AAAAACTTATAAAAATCATA
21091162 AAAAACTTATAAATAAT-AT-
1 AAAAACTTATAAA-AATCATA
**
21091181 AAAATTTTCATAAAAATC-TA
1 AAAAACTT-ATAAAAATCATA
*
21091201 ATAAA-TTATAAAAAT
1 AAAAACTTATAAAAAT
21091216 TTATAGAATA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
18 8 0.18
19 12 0.27
20 23 0.51
21 2 0.04
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAACTTATAAAAATCATA
Found at i:21091184 original size:50 final size:49
Alignment explanation
Indices: 21091108--21091228 Score: 126
Period size: 50 Copynumber: 2.4 Consensus size: 49
21091098 TAATAAAACA
* *
21091108 TATAAAACATACTTA-AAAT-ATTTAAAACTTTT-ATAAAAA-CTTATAAAAT
1 TATAAAA-A-ACTTATAAATAATATAAAA-TTTTCATAAAAATCTAAT-AAAT
21091157 TCATAAAAAACTTATAAATAATATAAAATTTTCATAAAAATCTAATAAAT
1 T-ATAAAAAACTTATAAATAATATAAAATTTTCATAAAAATCTAATAAAT
*
21091207 TAT-AAAAATTTATAGAATAATA
1 TATAAAAAACTTATA-AATAATA
21091229 AAATAAATAT
Statistics
Matches: 63, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
48 15 0.24
49 19 0.30
50 25 0.40
51 4 0.06
ACGTcount: A:0.57, C:0.07, G:0.01, T:0.36
Consensus pattern (49 bp):
TATAAAAAACTTATAAATAATATAAAATTTTCATAAAAATCTAATAAAT
Found at i:21091184 original size:59 final size:59
Alignment explanation
Indices: 21091035--21091213 Score: 153
Period size: 59 Copynumber: 3.1 Consensus size: 59
21091025 AGACTTGTAA
*
21091035 AAAATTCAT-AAAAACTTATAAAT-ATGATAAACA-ATTATAATATTTTTAAATAAATTAT
1 AAAATTCATAAAAAACTTATAAATAAT-ATAAA-ATATTATAAAATTTTTAAATAAATTAT
* * *
21091093 AAAATT-A-ATAAAACATATAAA-ACATACTTAAAATATT-TAAAACTTTTATAAA-AACTTAT
1 AAAATTCATAAAAAACTTATAAATA-ATA--TAAAATATTATAAAA-TTTT-TAAATAAATTAT
* * *
21091152 AAAATTCATAAAAAACTTATAAATAATATAAAATTTTCATAAAA-ATCT-AATAAATTAT
1 AAAATTCATAAAAAACTTATAAATAATATAAAATATT-ATAAAATTTTTAAATAAATTAT
21091210 AAAA
1 AAAA
21091214 ATTTATAGAA
Statistics
Matches: 97, Mismatches: 10, Indels: 28
0.72 0.07 0.21
Matches are distributed among these distances:
57 15 0.15
58 24 0.25
59 32 0.33
60 5 0.05
61 20 0.21
62 1 0.01
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.35
Consensus pattern (59 bp):
AAAATTCATAAAAAACTTATAAATAATATAAAATATTATAAAATTTTTAAATAAATTAT
Found at i:21091215 original size:9 final size:9
Alignment explanation
Indices: 21091011--21091216 Score: 57
Period size: 9 Copynumber: 21.2 Consensus size: 9
21091001 TGGTATAATT
21091011 TTATAAAAA
1 TTATAAAAA
* * *
21091020 TTGTAAGAC
1 TTATAAAAA
*
21091029 TTGTAAAAAA
1 TTAT-AAAAA
21091039 TTCATAAAAA
1 TT-ATAAAAA
*
21091049 CTTATAAATA
1 -TTATAAAAA
*
21091059 TGATAAACAA
1 TTATAAA-AA
* *
21091069 TTATAATAT
1 TTATAAAAA
*
21091078 TTTTAAATAAA
1 TTAT-AA-AAA
21091089 TTAT-AAAA
1 TTATAAAAA
21091097 TTAATAAAACA
1 TT-ATAAAA-A
21091108 -TATAAAACA
1 TTATAAAA-A
21091117 -TACTTAAAATA
1 TTA--TAAAA-A
*
21091128 TT-TAAAACTT
1 TTATAAAA--A
21091138 TTATAAAAA
1 TTATAAAAA
21091147 CTTAT-AAAA
1 -TTATAAAAA
21091156 TTCATAAAAAA
1 TT-AT-AAAAA
21091167 CTTATAAATAA
1 -TTATAAA-AA
*
21091178 -TATAAAATT
1 TTATAAAA-A
21091187 TTCATAAAAA
1 TT-ATAAAAA
*
21091197 TCTA-ATAAA
1 T-TATAAAAA
21091206 TTATAAAAA
1 TTATAAAAA
21091215 TT
1 TT
21091217 TATAGAATAA
Statistics
Matches: 149, Mismatches: 23, Indels: 50
0.67 0.10 0.23
Matches are distributed among these distances:
8 10 0.07
9 61 0.41
10 41 0.28
11 34 0.23
12 3 0.02
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (9 bp):
TTATAAAAA
Found at i:21091215 original size:30 final size:31
Alignment explanation
Indices: 21091149--21091217 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
21091139 TATAAAAACT
*
21091149 TATAAAA--TTCATAAAAAACTTATAAATAA
1 TATAAAATTTTCATAAAAAACTAATAAATAA
* *
21091178 TATAAAATTTTCATAAAAATCTAATAAATTA
1 TATAAAATTTTCATAAAAAACTAATAAATAA
21091209 TA-AAAATTT
1 TATAAAATTT
21091218 ATAGAATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 7 0.20
30 7 0.20
31 21 0.60
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (31 bp):
TATAAAATTTTCATAAAAAACTAATAAATAA
Found at i:21091229 original size:18 final size:18
Alignment explanation
Indices: 21091190--21091231 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
21091180 TAAAATTTTC
*
21091190 ATAAAAATCTAATAAATT
1 ATAAAAATCTAATAAATA
*
21091208 ATAAAAAT-TTATAGAATA
1 ATAAAAATCTAATA-AATA
21091226 ATAAAA
1 ATAAAA
21091232 TAAATATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (18 bp):
ATAAAAATCTAATAAATA
Found at i:21091250 original size:20 final size:21
Alignment explanation
Indices: 21091212--21091250 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
21091202 TAAATTATAA
21091212 AAATTTATAGAATAATAAAAT
1 AAATTTATAGAATAATAAAAT
21091233 AAATATTAT-GAA-AATAAA
1 AAAT-TTATAGAATAATAAA
21091251 GTATTTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 7 0.41
22 4 0.24
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (21 bp):
AAATTTATAGAATAATAAAAT
Found at i:21091807 original size:38 final size:37
Alignment explanation
Indices: 21091765--21091839 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
21091755 TATTAGAAAT
* *
21091765 TTTTAT-TTTTTAATAAGTTTTTATGCTGTTTTTATAAG
1 TTTTATATTATTAATAAGTTTTTA-G-AGTTTTTATAAG
*
21091803 TTTTATAATTATTAATAATTTTTTAGAGTTTTTATAA
1 TTTTAT-ATTATTAATAAGTTTTTAGAGTTTTTATAA
21091840 TATTTATCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 16 0.50
39 1 0.03
40 15 0.47
ACGTcount: A:0.29, C:0.01, G:0.08, T:0.61
Consensus pattern (37 bp):
TTTTATATTATTAATAAGTTTTTAGAGTTTTTATAAG
Found at i:21091825 original size:29 final size:29
Alignment explanation
Indices: 21091793--21091874 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 29
21091783 TTTTATGCTG
21091793 TTTTTATAAGTTTTATAATTATTAAT-AAT
1 TTTTTATAAGTTTTATAA-TATTAATCAAT
* * *
21091822 TTTTTA-GAGTTTTTATAATATTTATCCAT
1 TTTTTATAAG-TTTTATAATATTAATCAAT
*
21091851 TTTTTATAA-TATTTATAAAATTAA
1 TTTTTATAAGT-TTTATAATATTAA
21091875 AGAAATTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
28 9 0.21
29 33 0.77
30 1 0.02
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (29 bp):
TTTTTATAAGTTTTATAATATTAATCAAT
Found at i:21091939 original size:19 final size:20
Alignment explanation
Indices: 21091917--21092016 Score: 88
Period size: 18 Copynumber: 5.2 Consensus size: 20
21091907 TTTTATAATT
21091917 ATTTTTAT-AGTTTATTATA
1 ATTTTTATAAGTTTATTATA
*
21091936 A-TTTTATAAGTAT-TTATA
1 ATTTTTATAAGTTTATTATA
*
21091954 ATATTTATAAG-TTATTAT-
1 ATTTTTATAAGTTTATTATA
* *
21091972 -TTTTT-TCAATTTTTTTATA
1 ATTTTTAT-AAGTTTATTATA
*
21091991 ATTTTTATAAGTTTATATAAA
1 ATTTTTATAAGTTTAT-TATA
21092012 ATTTT
1 ATTTT
21092017 AATATTTTAA
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
16 1 0.02
17 6 0.10
18 19 0.30
19 17 0.27
20 11 0.17
21 9 0.14
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (20 bp):
ATTTTTATAAGTTTATTATA
Found at i:21091951 original size:10 final size:10
Alignment explanation
Indices: 21091908--21091965 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 10
21091898 ATCTTTATCT
*
21091908 TTTATAATTA
1 TTTATAAGTA
* *
21091918 TTTTTATAGTT
1 TTTATA-AGTA
21091929 TATTATAA-T-
1 T-TTATAAGTA
21091938 TTTATAAGTA
1 TTTATAAGTA
21091948 TTTATAA-TA
1 TTTATAAGTA
21091957 TTTATAAGT
1 TTTATAAGT
21091966 TATTATTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
8 6 0.15
9 11 0.28
10 14 0.36
11 4 0.10
12 4 0.10
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (10 bp):
TTTATAAGTA
Found at i:21091960 original size:9 final size:9
Alignment explanation
Indices: 21091931--21091963 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
21091921 TTATAGTTTA
21091931 TTATAAT-T
1 TTATAATAT
21091939 TTATAAGTAT
1 TTATAA-TAT
21091949 TTATAATAT
1 TTATAATAT
21091958 TTATAA
1 TTATAA
21091964 GTTATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 6 0.26
9 10 0.43
10 7 0.30
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (9 bp):
TTATAATAT
Found at i:21092025 original size:37 final size:36
Alignment explanation
Indices: 21091907--21092047 Score: 108
Period size: 37 Copynumber: 3.7 Consensus size: 36
21091897 TATCTTTATC
*
21091907 TTTTATAATTATTTTTATAGTTTATTATAATTTT-ATAA
1 TTTTATAATT-TTTATA-AGTTTATTATAATTTTAAT-A
* ** *
21091945 GTATTTATAATATTTATAAG-TTATTATTTTTTTCAATTT
1 -T-TTTATAATTTTTATAAGTTTATTATAATTTT-AA-TA
*
21091984 TTTTATAATTTTTATAAGTTTATATAAAATTTTAATA
1 TTTTATAATTTTTATAAGTTTAT-TATAATTTTAATA
*
21092021 TTTTAATAATTTTAATAATGTTT-TTAT
1 TTTT-ATAATTTTTATAA-GTTTATTAT
21092048 TTTTTGTTTA
Statistics
Matches: 82, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
37 34 0.41
38 22 0.27
39 17 0.21
40 9 0.11
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.61
Consensus pattern (36 bp):
TTTTATAATTTTTATAAGTTTATTATAATTTTAATA
Found at i:21113331 original size:55 final size:55
Alignment explanation
Indices: 21113208--21113335 Score: 143
Period size: 55 Copynumber: 2.3 Consensus size: 55
21113198 TGCGACATGG
* ** * * *
21113208 CCGTGGTCAAACTTGCCAAAATAACACAGGCGTACGACACGCCCGTGTGGAAGAT
1 CCGTGGTCAAACCTGTTAAAACAACACAGGCGTACGACACGCCCGTGTGCAAGAC
* * *
21113263 CCGTGGGT-GAACCTGTTAAAACAACACAGGCGTGCGACACGCCCGTGT-CTAGTAC
1 CCGT-GGTCAAACCTGTTAAAACAACACAGGCGTACGACACGCCCGTGTGCAAG-AC
21113318 CCGTGGTCAAACCTGTTA
1 CCGTGGTCAAACCTGTTA
21113336 GATTGACACG
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
54 5 0.08
55 52 0.87
56 3 0.05
ACGTcount: A:0.27, C:0.28, G:0.26, T:0.19
Consensus pattern (55 bp):
CCGTGGTCAAACCTGTTAAAACAACACAGGCGTACGACACGCCCGTGTGCAAGAC
Found at i:21117749 original size:13 final size:13
Alignment explanation
Indices: 21117731--21117771 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
21117721 CTACCAAAGG
21117731 GACACGACCGTGT
1 GACACGACCGTGT
21117744 GACACGACCGTGT
1 GACACGACCGTGT
* *
21117757 GACATGCCCGTGT
1 GACACGACCGTGT
21117770 GA
1 GA
21117772 GGAAGTCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:21122162 original size:13 final size:13
Alignment explanation
Indices: 21122144--21122184 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
21122134 CTACCAAAGG
21122144 GACACGACCGTGT
1 GACACGACCGTGT
21122157 GACACGACCGTGT
1 GACACGACCGTGT
* *
21122170 GACATGCCCGTGT
1 GACACGACCGTGT
21122183 GA
1 GA
21122185 GGAAGTCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:21126577 original size:13 final size:13
Alignment explanation
Indices: 21126559--21126599 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
21126549 CTACCAAAGG
21126559 GACACGACCGTGT
1 GACACGACCGTGT
21126572 GACACGACCGTGT
1 GACACGACCGTGT
* *
21126585 GACATGCCCGTGT
1 GACACGACCGTGT
21126598 GA
1 GA
21126600 GGAAGTCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:21130991 original size:13 final size:13
Alignment explanation
Indices: 21130973--21131013 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
21130963 CTACCAAAGG
21130973 GACACGACCGTGT
1 GACACGACCGTGT
21130986 GACACGACCGTGT
1 GACACGACCGTGT
* *
21130999 GACATGCCCGTGT
1 GACACGACCGTGT
21131012 GA
1 GA
21131014 GGAAGTCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:21135406 original size:13 final size:13
Alignment explanation
Indices: 21135388--21135428 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
21135378 CTACCAAAGG
21135388 GACACGACCGTGT
1 GACACGACCGTGT
21135401 GACACGACCGTGT
1 GACACGACCGTGT
* *
21135414 GACATGCCCGTGT
1 GACACGACCGTGT
21135427 GA
1 GA
21135429 GGAAGTCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:21141391 original size:22 final size:22
Alignment explanation
Indices: 21141349--21141392 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
21141339 TCTATAGATC
* *
21141349 GAATATTTATATATATGTATAA
1 GAATATTTAAATATATATATAA
21141371 GAATAATTTAAATA-ATATATAA
1 GAAT-ATTTAAATATATATATAA
21141393 AACATGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (22 bp):
GAATATTTAAATATATATATAA
Found at i:21143360 original size:103 final size:103
Alignment explanation
Indices: 21143249--21143451 Score: 343
Period size: 103 Copynumber: 2.0 Consensus size: 103
21143239 TCCTCAACTG
* *
21143249 CAACTTCAGAGAGATAAGGATTGTGGCTTTGATCTGCTCCACTGCAACTTCAGGGAGACAAGATC
1 CAACTTCAGAGAGATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTCAGGGAGACAAGATC
*
21143314 TGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGCTA
66 TGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGCTA
* * * *
21143352 CAACTTCAGAGAGATAAGGTTTGTGGCTTCGATCTACTTCACTGTAACTTCAGGGAGGCAAGATC
1 CAACTTCAGAGAGATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTCAGGGAGACAAGATC
21143417 TGCTATCTTCAGTCTGCTCCACTACAACTTCAGGG
66 TGCTATCTTCAGTCTGCTCCACTACAACTTCAGGG
21143452 AGATAAGACT
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 93 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (103 bp):
CAACTTCAGAGAGATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTCAGGGAGACAAGATC
TGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGCTA
Found at i:21144806 original size:56 final size:55
Alignment explanation
Indices: 21144699--21144807 Score: 139
Period size: 56 Copynumber: 1.9 Consensus size: 55
21144689 AATCCCCTTT
* * *
21144699 GGTCTCAAGGCGCCCTTTGCGGGTTTTCACCTTGGCCTTTCCTTTTTTTTAAGGAA
1 GGTCTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCTTTCC-TCTCTTTAAGGAA
* *
21144755 GGTCTCAAAGTGCCCTTTGCGGGTTTTCACTTTGGCCTCTTTCC-CTCTTTAAG
1 GGTCTCAAAGCGCCCTTTGCGGGTTTTCACCTTGG-C-CTTTCCTCTCTTTAAG
21144808 TGTAATACTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
56 39 0.85
57 1 0.02
58 6 0.13
ACGTcount: A:0.12, C:0.27, G:0.22, T:0.39
Consensus pattern (55 bp):
GGTCTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCTTTCCTCTCTTTAAGGAA
Found at i:21161361 original size:44 final size:44
Alignment explanation
Indices: 21161280--21161402 Score: 160
Period size: 44 Copynumber: 2.8 Consensus size: 44
21161270 CAAATTCATC
*
21161280 CACTGGCATT-TCGCCTGCTAGGCTCGAA-GCCCGATATCATTT
1 CACTGGCATTATAGCCTGCTAGGCTCGAAGGCCCGATATCATTT
* *
21161322 CACTGGCATTATAGCCTACTAGGCTTGAAGGCCCGATATCATTT
1 CACTGGCATTATAGCCTGCTAGGCTCGAAGGCCCGATATCATTT
** * * *
21161366 CACCAGCATTATAACATGCTAGGCTCAAAGGCCCGAT
1 CACTGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAT
21161403 TAGTACCGTA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 10 0.14
43 15 0.22
44 44 0.64
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (44 bp):
CACTGGCATTATAGCCTGCTAGGCTCGAAGGCCCGATATCATTT
Found at i:21169351 original size:22 final size:22
Alignment explanation
Indices: 21169309--21169352 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
21169299 TCTATAGATC
* *
21169309 GAATATTTATATATATGTATAA
1 GAATATTTAAATATATATATAA
21169331 GAATAATTTAAATA-ATATATAA
1 GAAT-ATTTAAATATATATATAA
21169353 AAGATGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (22 bp):
GAATATTTAAATATATATATAA
Found at i:21179891 original size:15 final size:14
Alignment explanation
Indices: 21179867--21179897 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
21179857 GAGCTCGGAA
21179867 AGCTTGGAAACCCT
1 AGCTTGGAAACCCT
21179881 AGCTATGGAAACCCT
1 AGCT-TGGAAACCCT
21179896 AG
1 AG
21179898 AAATTTCAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (14 bp):
AGCTTGGAAACCCT
Found at i:21183627 original size:42 final size:43
Alignment explanation
Indices: 21183547--21183629 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 43
21183537 AAATCGTACA
* **
21183547 ATGCCAACGTCCTAGACGTGGTCTTACATGTAGCCACATATCG
1 ATGCCAACGTCCTAGACGAGGTCTTACATGTAAACACATATCG
21183590 ATGCC-ACTGTCCTAGAC-AGGTCTTAC-TCGTAAACACATAT
1 ATGCCAAC-GTCCTAGACGAGGTCTTACAT-GTAAACACATAT
21183630 TGGAACCACA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
41 1 0.03
42 20 0.57
43 14 0.40
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCTAGACGAGGTCTTACATGTAAACACATATCG
Found at i:21186375 original size:38 final size:38
Alignment explanation
Indices: 21186324--21186396 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
21186314 TTCGTGTAAG
*
21186324 ACCATAGTTGGGATATTGCCATCGATATGAGATTCCAT
1 ACCATAGTTGGGATATTGCCACCGATATGAGATTCCAT
*
21186362 ACCATTGTTGGGATATTGCCACCGATATGAGATTC
1 ACCATAGTTGGGATATTGCCACCGATATGAGATTC
21186397 TATGTAATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (38 bp):
ACCATAGTTGGGATATTGCCACCGATATGAGATTCCAT
Found at i:21187208 original size:20 final size:20
Alignment explanation
Indices: 21187185--21187223 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
21187175 CACATGGGTG
21187185 TGTCCCAAGCCACACGGGCC
1 TGTCCCAAGCCACACGGGCC
*
21187205 TGTCCCAAGCCACATGGGC
1 TGTCCCAAGCCACACGGGC
21187224 GTGTGGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.41, G:0.26, T:0.13
Consensus pattern (20 bp):
TGTCCCAAGCCACACGGGCC
Found at i:21196711 original size:48 final size:48
Alignment explanation
Indices: 21196656--21196829 Score: 147
Period size: 48 Copynumber: 3.6 Consensus size: 48
21196646 TGATATGTGT
*
21196656 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGATATACAA
* ** * * * ** ** *
21196704 GAC-AGTGTAAGATATGTCTGTAACATGTATTGGTATTGAGA-GGA-GA
1 G-CTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGATATACAA
* * * * *
21196750 GCTAGTGTAATACATGTCTGGGACGTGCATCAGCTTCTAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGATATACAA
*
21196798 GCTAGTGTAAGACCTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
21196830 AGCTTGTTAT
Statistics
Matches: 91, Mismatches: 30, Indels: 9
0.70 0.23 0.07
Matches are distributed among these distances:
45 1 0.01
46 28 0.31
47 2 0.02
48 54 0.59
49 6 0.07
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGATATACAA
Found at i:21196913 original size:49 final size:49
Alignment explanation
Indices: 21196845--21196970 Score: 146
Period size: 49 Copynumber: 2.6 Consensus size: 49
21196835 GTTATGTATT
*
21196845 AGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAAATGAGA-GCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAAATGA-ACGCC
* *** * ** * *
21196894 AGTGTAAGACCTATCTGGGACACAACATCGGCTTCGATATATGAACGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAAATGAACGCC
21196943 AGTGTAAGACCTGTCTGGGACATGGCAT
1 AGTGTAAGACCTGTCTGGGACATGGCAT
21196971 TGACTTTGAT
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
48 1 0.02
49 61 0.98
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAAATGAACGCC
Found at i:21198195 original size:28 final size:29
Alignment explanation
Indices: 21198155--21198209 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
21198145 CACGGGCTGT
*
21198155 GACACGGGAGTGT-CATGGCTGTGTGAGG
1 GACACGGGAGTGTGCATGGCCGTGTGAGG
* *
21198183 GACACGGGTGTGTGCCTGGCCGTGTGA
1 GACACGGGAGTGTGCATGGCCGTGTGA
21198210 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.15, C:0.18, G:0.45, T:0.22
Consensus pattern (29 bp):
GACACGGGAGTGTGCATGGCCGTGTGAGG
Found at i:21200525 original size:42 final size:42
Alignment explanation
Indices: 21200462--21200625 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
21200452 CTTCGTTTTC
** *
21200462 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACAT-A
* *
21200505 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
21200546 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TCACATA
* *
21200595 TCGATGCCATAGCCTAGCTATGGTCGTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
21200626 GAATCACATA
Statistics
Matches: 104, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
41 2 0.02
42 63 0.61
43 1 0.01
45 2 0.02
48 1 0.01
49 35 0.34
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
Found at i:21200605 original size:49 final size:49
Alignment explanation
Indices: 21200532--21200715 Score: 175
Period size: 49 Copynumber: 3.8 Consensus size: 49
21200522 TATGGTCTTA
* *
21200532 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
* * *
21200582 CACATATCACATATCGATGCCATAGCCTAGCTATGGTCGTACACG-AAT
1 CACATATCACATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
* * * *
21200630 CACATAT--CTTA-CTGATGCCATATCCCAGATATGGTCTTATACAGT-AG
1 CACATATCACATATC-GATGCCATAGCCCAGATATGGTCTTACAC-GTAAT
* * * *
21200677 CATATATCAC--ACCGATGCCATATCCCAAATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGATATGGTCTTA
21200716 TACGGAAATC
Statistics
Matches: 116, Mismatches: 12, Indels: 15
0.81 0.08 0.10
Matches are distributed among these distances:
45 1 0.01
46 27 0.23
47 34 0.29
48 11 0.09
49 37 0.32
50 6 0.05
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
Found at i:21200772 original size:31 final size:31
Alignment explanation
Indices: 21200737--21200885 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
21200727 CTTGTCACTT
* *
21200737 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
21200768 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
21200799 GTAACCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
21200830 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
21200861 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
21200886 TGTCATTTGT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:21200966 original size:50 final size:51
Alignment explanation
Indices: 21200861--21200989 Score: 215
Period size: 50 Copynumber: 2.5 Consensus size: 51
21200851 CACTGATCAG
* * *
21200861 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
*
21200912 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
21200962 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
21200990 TGCCATGGTC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 48 0.66
51 25 0.34
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:21205888 original size:20 final size:20
Alignment explanation
Indices: 21205865--21205902 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
21205855 TAAAAGTTTT
* *
21205865 AATTTTAATTTTAATTTCGC
1 AATTTAAATTTAAATTTCGC
21205885 AATTTAAATTTAAATTTC
1 AATTTAAATTTAAATTTC
21205903 TTTATATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.53
Consensus pattern (20 bp):
AATTTAAATTTAAATTTCGC
Found at i:21207542 original size:72 final size:72
Alignment explanation
Indices: 21207425--21207573 Score: 217
Period size: 72 Copynumber: 2.1 Consensus size: 72
21207415 CAAAAAGTCG
* * * * * * *
21207425 ATGTCGTGACACACCAACACCTGTGTCGCGACGTAGCTACCAGTATGCTCTTTTGTAGCCATCTT
1 ATGTCGCGAAACACCAACACCTATGTCGCGACGTAGCAACCAGTATGCTCCTCTGCAGCCATCTT
21207490 CAGGGGT
66 CAGGGGT
* *
21207497 ATGTCGCGAAACACCAACACCTATTTCGTGACGTAGCAACCAGTATGCTCCTCTGCAGCCATCTT
1 ATGTCGCGAAACACCAACACCTATGTCGCGACGTAGCAACCAGTATGCTCCTCTGCAGCCATCTT
21207562 CAGGGGT
66 CAGGGGT
21207569 ATGTC
1 ATGTC
21207574 ATGACACCCT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (72 bp):
ATGTCGCGAAACACCAACACCTATGTCGCGACGTAGCAACCAGTATGCTCCTCTGCAGCCATCTT
CAGGGGT
Found at i:21212484 original size:17 final size:17
Alignment explanation
Indices: 21212458--21212504 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
21212448 ACTTAACAGA
* **
21212458 AGAGTCTGCCAATCCCT
1 AGAGTTTGCCAAAACCT
21212475 AGAGTTTGCCAAAACCT
1 AGAGTTTGCCAAAACCT
21212492 AGAGTTTGCCAAA
1 AGAGTTTGCCAAA
21212505 TGGAAAATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (17 bp):
AGAGTTTGCCAAAACCT
Found at i:21214513 original size:49 final size:49
Alignment explanation
Indices: 21214449--21214665 Score: 227
Period size: 49 Copynumber: 4.4 Consensus size: 49
21214439 CTGGTACGCA
*
21214449 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** ** * *
21214498 TAGTAGCTTGCACTTAGTACTACACACGTAACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * ** * *
21214548 TAATAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* * * * *
21214599 TAGTAGCCTGCTCTTAGTATTACACATGCGACCAATAATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
21214648 TAGTAGCCTGCACTTAGT
1 TAGTAGCCTGCACTTAGT
21214666 CATAGGAGAG
Statistics
Matches: 133, Mismatches: 32, Indels: 6
0.78 0.19 0.04
Matches are distributed among these distances:
49 54 0.41
50 45 0.34
51 34 0.26
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:21214565 original size:50 final size:49
Alignment explanation
Indices: 21214452--21214576 Score: 160
Period size: 50 Copynumber: 2.5 Consensus size: 49
21214442 GTACGCATAG
* ** ** * *
21214452 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTAACCAACCATCCGATACACGTAA
* *
21214501 TAGCTTGCACTTAGTACTACACACGTAACCTAACCATCTGATACACGTAA
1 TAGCCTGCACTTAGTACTACACACGTAACC-AACCATCCGATACACGTAA
21214551 TAGCCTGCACTTAGTACTACACACGT
1 TAGCCTGCACTTAGTACTACACACGT
21214577 GATCGAAGTT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 26 0.40
50 39 0.60
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACACGTAACCAACCATCCGATACACGTAA
Found at i:21220041 original size:48 final size:48
Alignment explanation
Indices: 21219977--21220073 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
21219967 TTTGTTTTAG
21219977 TATCAGAGCATAGGTTTAGTCGATTCTAGTTTATAAGCAAGTTTAGCA
1 TATCAGAGCATAGGTTTAGTCGATTCTAGTTTATAAGCAAGTTTAGCA
21220025 TATCAGAGCATAGGTTTAGTCGATTCTAGTTTATAAGCAAGTTTAGCA
1 TATCAGAGCATAGGTTTAGTCGATTCTAGTTTATAAGCAAGTTTAGCA
21220073 T
1 T
21220074 TTCATGTTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (48 bp):
TATCAGAGCATAGGTTTAGTCGATTCTAGTTTATAAGCAAGTTTAGCA
Found at i:21225914 original size:18 final size:16
Alignment explanation
Indices: 21225883--21225920 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 16
21225873 TTCTATATAG
21225883 ATTTTACTTTTATTTT
1 ATTTTACTTTTATTTT
21225899 ATTTTACTACTTTATTTT
1 ATTTTACT--TTTATTTT
21225917 ATTT
1 ATTT
21225921 AAATAACAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
18 12 0.60
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTACTTTTATTTT
Found at i:21230087 original size:18 final size:17
Alignment explanation
Indices: 21230060--21230106 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
21230050 TTAGCATAAA
*
21230060 AATAACAATAATATTCAC
1 AATAAAAATAATATTC-C
* *
21230078 AATAAAAATAATGTTCT
1 AATAAAAATAATATTCC
21230095 AAT-AAAATAATA
1 AATAAAAATAATA
21230107 AAATAAATAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 8 0.32
17 3 0.12
18 14 0.56
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.30
Consensus pattern (17 bp):
AATAAAAATAATATTCC
Found at i:21230532 original size:3 final size:3
Alignment explanation
Indices: 21230517--21230638 Score: 63
Period size: 3 Copynumber: 41.0 Consensus size: 3
21230507 ACAATAAAGG
* * * *
21230517 ATA ATA GTA ATA ATA ATA ATA ATA ATGA A-A ATA AGA GTA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
* * * * ** * *
21230562 ATA TTA CATTA A-A AT- ACA ATA GTA A-A GTA ATA GGA ATA GTG ATA
1 ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
21230606 ATA ATA ATA ATA ATA ACA ATA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
21230639 TTGAAATACA
Statistics
Matches: 84, Mismatches: 28, Indels: 14
0.67 0.22 0.11
Matches are distributed among these distances:
2 6 0.07
3 73 0.87
4 3 0.04
5 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:21230752 original size:3 final size:3
Alignment explanation
Indices: 21230746--21230922 Score: 61
Period size: 3 Copynumber: 59.7 Consensus size: 3
21230736 AAATATACAC
* * * * *
21230746 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA AAA CAA CAA AAA GCAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
** * * * * *
21230792 GCA TAA T-A TAA TAA AAA TAT TAA -AA TAA -AG TAA TTA GAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
21230836 TAC T-A TGTA TAA -AA TATA TACA T-A TACA TATA TAA TAA -AA -AA
1 TAA TAA T-AA TAA TAA TA-A TA-A TAA TA-A TA-A TAA TAA TAA TAA
*
21230878 T-A TACA CTAT TAA TAA TAA TAA TAA TAA TAA -ATA TAA TAA TAA TA
1 TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA
21230923 TCAATAACAA
Statistics
Matches: 133, Mismatches: 24, Indels: 34
0.70 0.13 0.18
Matches are distributed among these distances:
2 19 0.14
3 95 0.71
4 17 0.13
5 2 0.02
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:21230756 original size:145 final size:141
Alignment explanation
Indices: 21230603--21231473 Score: 678
Period size: 145 Copynumber: 6.2 Consensus size: 141
21230593 AGGAATAGTG
* * *
21230603 ATAATAATAATAATAATAACAATAATAGTAATAATATTGAAATACAAAAAGCAATTGTAGTATAA
1 ATAATAATAATAATAATAA-AATAATAATAATAATATTGAAATACAAAAAGCAA-TATAATATAA
* *
21230668 TAAAAATAAAGTAATTAAAAAAATAATAGTATGTATAAATATA-AGTATATATACATATATAATA
64 TAAAAATAAAGTAATTAAAAAAATAATACTATATATAAATATATA-TATATATACATATATAAT-
21230732 AAAAAAATATACACTA
127 -AAAAAATATACACTA
* * * ** * *
21230748 ATAATAATAATAATAATAATAATAATAAAAACAACA---AAA-AGCAAGCA-TAATATAATAAAA
1 ATAATAATAATAATAATAA-AATAATAATAATAATATTGAAATA-CAAAAAGCAATATAAT-ATA
* * *
21230808 ATATTAAAATAAAGTAATT-AGAAAATAATACTATGTATAAA-ATATATACATATACATATATAA
63 ATA--AAAATAAAGTAATTAAAAAAATAATACTATATATAAATATATATATATATACATATATAA
21230871 TAAAAAATATACACTA
126 TAAAAAATATACACTA
* * *
21230887 TTAATAATAATAATAATAATAA-ATATAATAATAATA-T-CAATAACAAAAAGCAAGCATAATAT
1 ATAATAATAATAATAATAA-AATA-ATAATAATAATATTGAAAT-ACAAAAAGCAA-TATAATAT
* * * * *
21230949 AATAAAAATATTAAAATAAAGTAATTAGAAAATAATACTATGTATAAA-ATATATACATATACAC
62 AAT-AAAA-A-TAAAGT-AATTAA--A-AAAATAATACTATATATAAATATATATATATATACAT
*
21231013 GTATAATAAAAAATATACACTA
120 ATATAATAAAAAATATACACTA
*
21231035 TTAATAATAATAATAAT-AAAT-ATAATAATAATATT--AATAACAAAAAGCGAATATAATATAA
1 ATAATAATAATAATAATAAAATAATAATAATAATATTGAAAT-ACAAAAAGC-AATATAATATAA
* * * * *
21231096 TAAAAATATTAAAATAAAGTAATTAAAATAATGCTATATAT-AA-AGATATATATATACATATAT
64 T-AAAA-A-TAAAGT-AATTAA-AAAAATAATACTATATATAAATATATATATATATACATATAT
21231159 AAT-AAAAATATACACTA
124 AATAAAAAATATACACTA
*
21231176 AT-AT-ATAATAATAAT--AATAATAATAATAATATTGAAATACAAAAA--AGTA-AATATAATA
1 ATAATAATAATAATAATAAAATAATAATAATAATATTGAAATACAAAAAGCAATATAATATAATA
* * * * *
21231234 AAAAT--ATTAA--AAATAAATAATA--AAAAATAATACTATATATATACGTATACATATACAAT
66 AAAATAAAGTAATTAAAAAAATAATACTATATATAA-A-TATATATATA--TATACATATATAAT
21231293 -AAAAATATACAC--
127 AAAAAATATACACTA
*
21231305 ----TAAT-AT-ATGAT--AATAATAATAATAATATTGAAATACAAAAAGC-ATATAATATAATA
1 ATAATAATAATAATAATAAAATAATAATAATAATATTGAAATACAAAAAGCAATATAATATAAT-
* * * *
21231361 AAAATATTAAAATAAGGTAATAAAATAATACTATATATAAATATGTATACATATACATACATATA
65 AAAA-A-TAAAGTAA-TTAAAAAAATAATACTATATATAAATA--TAT--ATATATATACATATA
21231426 TAATAAAAATAATATACACTA
123 TAAT-AAAA-AATATACACTA
21231447 ATAATAATAATAATAATAATAATAATA
1 ATAATAATAATAATAATAA-AATAATA
21231474 TGAAAAAAAG
Statistics
Matches: 606, Mismatches: 57, Indels: 120
0.77 0.07 0.15
Matches are distributed among these distances:
125 38 0.06
126 6 0.01
127 18 0.03
128 6 0.01
129 9 0.01
130 3 0.00
131 27 0.04
132 4 0.01
133 1 0.00
134 1 0.00
135 16 0.03
136 9 0.01
137 24 0.04
138 4 0.01
139 78 0.13
140 24 0.04
141 53 0.09
142 57 0.09
143 40 0.07
144 4 0.01
145 88 0.15
146 9 0.01
147 3 0.00
148 77 0.13
151 7 0.01
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (141 bp):
ATAATAATAATAATAATAAAATAATAATAATAATATTGAAATACAAAAAGCAATATAATATAATA
AAAATAAAGTAATTAAAAAAATAATACTATATATAAATATATATATATATACATATATAATAAAA
AATATACACTA
Found at i:21230952 original size:148 final size:142
Alignment explanation
Indices: 21230606--21231479 Score: 940
Period size: 148 Copynumber: 6.3 Consensus size: 142
21230596 AATAGTGATA
* * * * *
21230606 ATAATAATAATAATAACAATAATAGTAATAATATTGAAATACAAAAAGCAATTGTAGTATAAT-A
1 ATAATAATAATAATAATAATAATAATAATAATA-TGAAA-ACAAAAAGCAAGTATAATATAATAA
* * * *
21230670 AAA-A-TAAAGT-AATTAA--AAAAATAATAGTATGTAT-AAATATAAGTATATATACATATATA
64 AAATATTAAAATAAAGTAATTAAAAATAATACTATGTATAAAATAT-A-TACATATACATATATA
21230729 ATAAAAAAAATATACAC-
127 AT--AAAAAATATACACT
*
21230746 -TAATAATAATAATAATAATAATAATAATAA-A--AACAACAAAAAGCAAGCATAATATAATAAA
1 ATAATAATAATAATAATAATAATAATAATAATATGAA-AACAAAAAGCAAGTATAATATAATAAA
21230807 AATATTAAAATAAAGTAATTAGAAAATAATACTATGTATAAAATATATACATATACATATATAAT
65 AATATTAAAATAAAGTAATTA-AAAATAATACTATGTATAAAATATATACATATACATATATAAT
21230872 AAAAAATATACACT
129 AAAAAATATACACT
* *
21230886 ATTAATAATAATAATAATAATAAATATAATAATAATATCAATAACAAAAAGCAAGCATAATATAA
1 A-TAATAATAATAATAATAAT--A-ATAATAATAATATGAA-AACAAAAAGCAAGTATAATATAA
**
21230951 TAAAAATATTAAAATAAAGTAATTAGAAAATAATACTATGTATAAAATATATACATATACACGTA
61 TAAAAATATTAAAATAAAGTAATTA-AAAATAATACTATGTATAAAATATATACATATACATATA
21231016 TAATAAAAAATATACACT
125 TAATAAAAAATATACACT
*
21231034 ATTAATAATAATAATAATAA-ATATAATAATAATATTAATAACAAAAAGCGAA-TATAATATAAT
1 A-TAATAATAATAATAATAATA-ATAATAATAATATGAA-AACAAAAAGC-AAGTATAATATAAT
* *
21231097 AAAAATATTAAAATAAAGTAATT-AAAATAATGCTATATATAAAGATATAT--ATATACATATAT
62 AAAAATATTAAAATAAAGTAATTAAAAATAATACTATGTATAAA-ATATATACATATACATATAT
21231159 AAT-AAAAATATACAC-
126 AATAAAAAATATACACT
21231174 -TAATATATAATAATAATAATAATAATAATAATATTGAAATAC-AAAA--AAGTA-AATATAATA
1 ATAATA-ATAATAATAATAATAATAATAATAATA-TGAAA-ACAAAAAGCAAGTATAATATAATA
* * *
21231234 AAAATATTAAAAATAAA-TAATAAAAAATAATAC----TAT---ATATATACGTATACATATACA
63 AAAATATT-AAAATAAAGTAATTAAAAATAATACTATGTATAAAATATATACATATACATATATA
21231291 AT-AAAAATATACAC-
127 ATAAAAAATATACACT
*
21231305 -TAAT-AT-ATGATAATAATAATAATAAT-AT-TGAAATACAAAAAGC-A-TATAATATAATAAA
1 ATAATAATAATAATAATAATAATAATAATAATATGAAA-ACAAAAAGCAAGTATAATATAATAAA
* * * *
21231363 AATATTAAAATAAGGTAA-T-AAAATAATACTATATATAAATATGTATACATATACATACATATA
65 AATATTAAAATAAAGTAATTAAAAATAATACTATGTATAAA-ATATATACATATACATATATA-A
21231426 TAATAAAA-ATA-A-T
128 TAA-AAAATATACACT
21231439 ATACACTAATAATAATAATAATAATAATAATAATATGAAAA
1 ATA-A-TAATAATAATAATAATAATAATAATAATATGAAAA
21231480 AAAGAATAAT
Statistics
Matches: 649, Mismatches: 32, Indels: 106
0.82 0.04 0.13
Matches are distributed among these distances:
125 18 0.03
126 13 0.02
127 23 0.04
128 19 0.03
129 11 0.02
131 29 0.04
133 20 0.03
134 3 0.00
135 27 0.04
136 33 0.05
137 21 0.03
138 13 0.02
139 95 0.15
140 9 0.01
141 35 0.05
142 49 0.08
143 24 0.04
144 7 0.01
145 71 0.11
146 3 0.00
148 126 0.19
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (142 bp):
ATAATAATAATAATAATAATAATAATAATAATATGAAAACAAAAAGCAAGTATAATATAATAAAA
ATATTAAAATAAAGTAATTAAAAATAATACTATGTATAAAATATATACATATACATATATAATAA
AAAATATACACT
Found at i:21231044 original size:3 final size:3
Alignment explanation
Indices: 21231036--21231508 Score: 104
Period size: 3 Copynumber: 154.7 Consensus size: 3
21231026 TATACACTAT
* * *
21231036 TAA TAA TAA TAA TAA TAA -ATA TAA TAA TAA TAT TAA TAA CAA AAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
21231081 GCGAA T-A TAA T-A TAA TAA AAA TAT TAA -AA TAA -AG TAA TTAA -AA
1 --TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
** *
21231124 TAA TGC T-A TATA TAA -AGA TATA TATA TACA TATA TAA TAA AAA T-A
1 TAA TAA TAA TA-A TAA TA-A TA-A TA-A TA-A TA-A TAA TAA TAA TAA
* *
21231169 TACA CTAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAT TGA -AA TACA
1 TA-A -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * * *
21231217 -AA AAA GTAA -ATA TAA TAA AAA TAT TAA AAA TAAA TAA TAA -AA -AA
1 TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
* * * *
21231261 TAA TAC TATA TATA TACG T-A TACA TATA CAA TAA AAA T-A TACA CTAA
1 TAA TAA TA-A TA-A TA-A TAA TA-A TA-A TAA TAA TAA TAA TA-A -TAA
* * * **
21231308 TATA TGA TAA TAA TAA TAA TAA TAT TGA -AA TACA -AA -AA GCA T-A
1 TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * *
21231351 TAA T-A TAA TAA AAA TAT TAA -AA TAA GGTAA TAA -AA TAA TAC T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA --TAA TAA TAA TAA TAA TAA
* *
21231394 TATA TAA -ATA TGTA TACA T-A TACA TACA TATA TAA TAA AAA TAA T-A
1 TA-A TAA TA-A T-AA TA-A TAA TA-A TA-A TA-A TAA TAA TAA TAA TAA
* *
21231440 TACA CTAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TGAA -AA AAA GAA
1 TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
*
21231486 TAA TAA TAA TAA TAA TAA CAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
21231509 GTGTTTAGAC
Statistics
Matches: 350, Mismatches: 64, Indels: 112
0.67 0.12 0.21
Matches are distributed among these distances:
2 46 0.13
3 223 0.64
4 70 0.20
5 11 0.03
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:21231238 original size:25 final size:25
Alignment explanation
Indices: 21231210--21231266 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
21231200 AATAATATTG
*
21231210 AAATACAAAAAAGTAAAT-ATAATAA
1 AAATACAAAAAA-TAAATAATAAAAA
**
21231235 AAATATTAAAAATAAATAATAAAAA
1 AAATACAAAAAATAAATAATAAAAA
21231260 ATAATAC
1 A-AATAC
21231267 TATATATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 5 0.19
25 17 0.65
26 4 0.15
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.23
Consensus pattern (25 bp):
AAATACAAAAAATAAATAATAAAAA
Found at i:21231272 original size:127 final size:130
Alignment explanation
Indices: 21230996--21231502 Score: 438
Period size: 136 Copynumber: 3.8 Consensus size: 130
21230986 CTATGTATAA
* ** *
21230996 AATATATACATATACACGTATAATAAAAAATATACACTATTA-ATAATAATAATAATAAATATAA
1 AATATATATATATACATATATAAT-AAAAATATACACTAATATATAATAATAATAAT--A-ATAA
21231060 TAATAATATT--AATAACAAAAAGCGAATATAATATAATAAAAATATTAAAATAA-AGTAATTAA
62 TAATAATATTGAAAT-ACAAAAA--G-ATATAATATAATAAAAATATTAAAATAAGA-TAA-TAA
*
21231122 AATAATGCTAT
121 AATAATAC-AT
21231133 ATATAAAGATATATATATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATA
1 A-AT----ATATATATATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATA
21231198 ATAATAATATTGAAATACAAAAA-AGTA-AATATAATAAAAATATTAAAAATAA-ATAATAAAA-
61 ATAATAATATTGAAATACAAAAAGA-TATAATATAATAAAAATATT-AAAATAAGATAATAAAAT
21231259 AATA-AT
124 AATACAT
* *
21231265 ACTATATATATACGTATACATATACAATAAAAATATACAC---TA-AT-AT-ATGATAATAATAA
1 A--ATATATATA--TATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATAA
*
21231324 TAATAATATTGAAATACAAAAAGCATATAATATAATAAAAATATTAAAATAAGGTAATAAAATAA
62 TAATAATATTGAAATACAAAAAG-ATATAATATAATAAAAATATTAAAATAAGATAATAAAATAA
21231389 TACTAT
126 TAC-AT
* * * * * * *
21231395 ATATAAATATGTATACATATACATACATATATAATA-AAAATAATATACACTAATAATAATAATA
1 A-ATATATATATATACATAT--ATA-ATA-AAAATATACACTAATATATAATAATAATAATAATA
* * *
21231459 ATAATAATAAT-AATATGAAAAAAAGA-ATAATAATAATAATAATA
61 ATAATAATATTGAA-AT-ACAAAAAGATATAAT-ATAATAAAAATA
21231503 ACAATAGTGT
Statistics
Matches: 317, Mismatches: 20, Indels: 67
0.78 0.05 0.17
Matches are distributed among these distances:
125 34 0.11
126 11 0.03
127 37 0.12
128 6 0.02
129 17 0.05
130 8 0.03
131 30 0.09
132 3 0.01
133 5 0.02
134 4 0.01
135 13 0.04
136 56 0.18
137 18 0.06
138 2 0.01
139 14 0.04
140 8 0.03
141 19 0.06
142 32 0.10
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (130 bp):
AATATATATATATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATAATAAT
AATATTGAAATACAAAAAGATATAATATAATAAAAATATTAAAATAAGATAATAAAATAATACAT
Found at i:21231389 original size:125 final size:127
Alignment explanation
Indices: 21231141--21231467 Score: 384
Period size: 125 Copynumber: 2.5 Consensus size: 127
21231131 ATATATAAAG
*
21231141 ATATATA-TATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATAATAATAA
1 ATATATAGTATACATATACAATAAAAATATACAC--ATATATAATAATAATAATAATAATAATAA
21231205 TATTGAAATACAAAAAAGTAAATATAATAAAAATATTAAAAATAAATAATAAAAAATAATACTAT
64 TATTGAAATACAAAAAAGTAAATATAATAAAAATATTAAAAATAAATAAT-AAAAATAATACTAT
*
21231270 ATATATACGTATACATATACAATAAAAATATACAC-TA-AT-AT-ATGATAATAATAATAATAAT
1 ATATATA-GTATACATATACAATAAAAATATACACATATATAATAATAATAATAATAATAATAAT
*
21231331 ATTGAAATAC-AAAAAGCATATAATATAATAAAAATATT-AAAATAAGGTAAT-AAAATAATACT
65 ATTGAAATACAAAAAAG--TA-AATATAATAAAAATATTAAAAATAA-ATAATAAAAATAATACT
21231393 AT
126 AT
* * *
21231395 ATATAAATATGTATACATATAC-ATACATATATAATAAAAATAATATACACTAATAATAATAATA
1 ATAT--ATA-GTATACATATACAATA-A-AAAT-ATACACAT-ATATA-A-TAATAATAATAATA
21231459 ATAATAATA
57 ATAATAATA
21231468 ATAATATGAA
Statistics
Matches: 172, Mismatches: 8, Indels: 29
0.82 0.04 0.14
Matches are distributed among these distances:
124 6 0.03
125 46 0.27
126 14 0.08
127 39 0.23
128 5 0.03
129 11 0.06
130 1 0.01
131 26 0.15
132 2 0.01
134 1 0.01
135 1 0.01
136 20 0.12
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (127 bp):
ATATATAGTATACATATACAATAAAAATATACACATATATAATAATAATAATAATAATAATAATA
TTGAAATACAAAAAAGTAAATATAATAAAAATATTAAAAATAAATAATAAAAATAATACTAT
Found at i:21234176 original size:86 final size:86
Alignment explanation
Indices: 21234026--21234187 Score: 279
Period size: 86 Copynumber: 1.9 Consensus size: 86
21234016 GTTATTTTGA
21234026 TGAAAAACAGAAATTAAAAATACCTCAGCGTATCCTGAGACTCAACTCACCTCTCGCAATATGAG
1 TGAAAAACAGAAATTAAAAATACCTCAGCGTATCCTGAGACTCAACTCACCTCTCGCAATATGAG
21234091 CTGATTTTTTTTTAAATAAAT
66 CTGATTTTTTTTTAAATAAAT
* * * *
21234112 TGAAGAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TGAAAAACAGAAATTAAAAATACCTCAGCGTATCCTGAGACTCAACTCACCTCTCGCAATATGAG
*
21234177 TTGATTTTTTT
66 CTGATTTTTTT
21234188 GATGAACAGA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 71 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (86 bp):
TGAAAAACAGAAATTAAAAATACCTCAGCGTATCCTGAGACTCAACTCACCTCTCGCAATATGAG
CTGATTTTTTTTTAAATAAAT
Found at i:21234239 original size:75 final size:75
Alignment explanation
Indices: 21234111--21234273 Score: 240
Period size: 75 Copynumber: 2.2 Consensus size: 75
21234101 TTTAAATAAA
* * *
21234111 TTGAAGAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAGAACAGAAATTAAAACTACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
*
21234176 GTTGATTTTT
66 GTTAATTTTT
* * *
21234186 TTGATGAACAGAAATTAAAACTACTTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAGAACAGAAATTAAAACTACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
21234251 GTTAA-TTTT
66 GTTAATTTTT
*
21234260 TTGAA-AACAAAAAT
1 TTGAAGAACAGAAAT
21234274 AACAAACAGA
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
73 8 0.10
74 8 0.10
75 63 0.80
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.31
Consensus pattern (75 bp):
TTGAAGAACAGAAATTAAAACTACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTTTT
Found at i:21234367 original size:161 final size:160
Alignment explanation
Indices: 21233903--21234367 Score: 530
Period size: 161 Copynumber: 2.9 Consensus size: 160
21233893 GACCTTGGGT
* * * * *
21233903 TCAACTCACCTCTCGCGATATAAGTTGATTTTTTGAAAAACAGACATAAT-AAAATAGAATTTGA
1 TCAACTCACCTCTCGCAATATGAGTTAATTTTTTG-AAAACA-A-A-AATAAAAACAGAAATTGA
* * *
21233967 AAATAACTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-ATTTTGATGAAA
62 AAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT--TGAAA
* * * *
21234031 AACAGAAATTAAAAATACCTCAGCGTATCCTGAGAC
125 GACAGAAATTAAAACTACCTCAACGTATCCTAAGAC
* * ** * * *
21234067 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTTAAA-TAAATTGAAGAACAGAAATT-AAA
1 TCAACTCACCTCTCGCAATATGAG-TTAATTTTTTGAAAACAAAAAT-AAAAACAGAAATTGAAA
* *
21234130 ATTACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-ATG
64 A-TACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAG
* * * *
21234192 AACAGAAATTAAAACTACTTCAACGTGTCTTAAGGC
126 -ACAGAAATTAAAACTACCTCAACGTATCCTAAGAC
21234228 TCAACTCACCTCTCGCAATATGAGTTAATTTTTTGAAAACAAAAATAACAAACAGAAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTAATTTTTTGAAAACAAAAATAA-AAACAGAAATTGAAAA
*
21234293 TACCTCAGCATGTGACCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAGACAG
65 TACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAG
21234358 AAATTAAAAC
130 AAATTAAAAC
21234368 ATCCGAGTAC
Statistics
Matches: 252, Mismatches: 35, Indels: 31
0.79 0.11 0.10
Matches are distributed among these distances:
160 52 0.21
161 103 0.41
162 23 0.09
163 42 0.17
164 25 0.10
165 7 0.03
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (160 bp):
TCAACTCACCTCTCGCAATATGAGTTAATTTTTTGAAAACAAAAATAAAAACAGAAATTGAAAAT
ACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAGA
AATTAAAACTACCTCAACGTATCCTAAGAC
Found at i:21242816 original size:15 final size:16
Alignment explanation
Indices: 21242796--21242830 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
21242786 CGTTTTATTT
*
21242796 AAAAACT-AAACTATA
1 AAAAACTAAAACAATA
21242811 AAAAACTAAAACAATA
1 AAAAACTAAAACAATA
21242827 AAAA
1 AAAA
21242831 CTTAGAGCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.14
Consensus pattern (16 bp):
AAAAACTAAAACAATA
Found at i:21243651 original size:18 final size:17
Alignment explanation
Indices: 21243624--21243670 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
21243614 TTAGCATAAA
*
21243624 AATAACAATAATATTCAC
1 AATAAAAATAATATTC-C
* *
21243642 AATAAAAATAATGTTCT
1 AATAAAAATAATATTCC
21243659 AAT-AAAATAATA
1 AATAAAAATAATA
21243671 AAAGAAATAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 8 0.32
17 3 0.12
18 14 0.56
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.30
Consensus pattern (17 bp):
AATAAAAATAATATTCC
Found at i:21243869 original size:13 final size:13
Alignment explanation
Indices: 21243851--21243877 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21243841 ATTATGTGAA
21243851 ACAAAATAATGAT
1 ACAAAATAATGAT
21243864 ACAAAATAATGAT
1 ACAAAATAATGAT
21243877 A
1 A
21243878 ATAATAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (13 bp):
ACAAAATAATGAT
Found at i:21244095 original size:3 final size:3
Alignment explanation
Indices: 21244080--21244201 Score: 63
Period size: 3 Copynumber: 41.0 Consensus size: 3
21244070 ACAATAAAGG
* * * *
21244080 ATA ATA GTA ATA ATA ATA ATA ATA ATGA A-A ATA AGA GTA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
* * * * ** * *
21244125 ATA GTA CATTA A-A AT- ACA ATA GTA A-A GTA ATA GGA ATA GTG ATA
1 ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
21244169 ATA ATA ATA ATA ATA ACA ATA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
21244202 TTGAAATACA
Statistics
Matches: 84, Mismatches: 28, Indels: 14
0.67 0.22 0.11
Matches are distributed among these distances:
2 6 0.07
3 73 0.87
4 3 0.04
5 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:21244315 original size:3 final size:3
Alignment explanation
Indices: 21244309--21244480 Score: 67
Period size: 3 Copynumber: 57.7 Consensus size: 3
21244299 AAATATACAC
* * * * **
21244309 TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA CAA AAA GCAA GCA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
* * * * * *
21244355 T-A TAA TAA AAA TAT TAA -AA TAA -AG TAA TTA GAA -AA TAA TAC T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
21244398 TGTA TAA AAA TATA TACA T-A TACA TATA TAA TAA -AA -AA T-A TACA
1 T-AA TAA TAA TA-A TA-A TAA TA-A TA-A TAA TAA TAA TAA TAA TA-A
21244442 CTAA TAA TAA TAA TAA TAA TAA TAA -ATA TAA TAA TAA TA
1 -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA
21244481 TCAATAACAA
Statistics
Matches: 130, Mismatches: 23, Indels: 32
0.70 0.12 0.17
Matches are distributed among these distances:
2 17 0.13
3 93 0.72
4 18 0.14
5 2 0.02
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (3 bp):
TAA
Done.