Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 7 of 311
Found at i:1853139 original size:12 final size:12
Alignment explanation
Indices: 1853125--1853209 Score: 89
Period size: 12 Copynumber: 6.8 Consensus size: 12
1853115 TTGTTTATTT
*
1853125 TATTATTATTAT
1 TATTATTATTAC
1853137 TATTATTATTTAC
1 TATTATTA-TTAC
1853150 TATTATTATCTTTAC
1 TATTATTA---TTAC
* *
1853165 TATTATTGTTAG
1 TATTATTATTAC
*
1853177 TATTATTACTAC
1 TATTATTATTAC
1853189 TATTATTATTAC
1 TATTATTATTAC
*
1853201 TATCATTAT
1 TATTATTAT
1853210 ATTTATACCT
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
12 39 0.63
13 11 0.18
15 12 0.19
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:1853385 original size:36 final size:34
Alignment explanation
Indices: 1853345--1853413 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
1853335 CATATTTTCG
*
1853345 TATATTTTATAATTTGTATATACATATACTTATATC
1 TATATTTTATAATTT-T-TATAAATATACTTATATC
* *
1853381 TATATTTTCTAATTTTTATAAATATATTTATAT
1 TATATTTTATAATTTTTATAAATATACTTATAT
1853414 GTACATACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 15 0.50
35 1 0.03
36 14 0.47
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.57
Consensus pattern (34 bp):
TATATTTTATAATTTTTATAAATATACTTATATC
Found at i:1853533 original size:13 final size:13
Alignment explanation
Indices: 1853510--1853544 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
1853500 AATATCACTA
1853510 TTTACTTTTTTATT
1 TTTA-TTTTTTATT
1853524 TTTATTTTTTATT
1 TTTATTTTTTATT
*
1853537 ATTATTTT
1 TTTATTTT
1853545 CAAATTTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATTTTTTATT
Found at i:1861248 original size:93 final size:93
Alignment explanation
Indices: 1861135--1861306 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
1861125 CGCCCATAAG
* *
1861135 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1861200 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
1861228 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1861293 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
1861307 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:1861303 original size:46 final size:46
Alignment explanation
Indices: 1861128--1861303 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
1861118 TGTAACCCGC
* * *
1861128 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
1861174 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
1861224 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
1861267 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
1861304 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:1862648 original size:28 final size:28
Alignment explanation
Indices: 1862594--1862693 Score: 121
Period size: 28 Copynumber: 3.6 Consensus size: 28
1862584 TATTACAAAG
*
1862594 ATAGTCTTGACGGAC-TCCACATATAAA
1 ATAGTCTTGACGAACTTCCACATATAAA
* *
1862621 ATAGTCTTGATGAACTTTCACATATAAA
1 ATAGTCTTGACGAACTTCCACATATAAA
* * *
1862649 ATAGTCTTGACAAACTTCCACATGTAAG
1 ATAGTCTTGACGAACTTCCACATATAAA
* *
1862677 ATAGTCCTGACAAACTT
1 ATAGTCTTGACGAACTT
1862694 ATCAATTAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
27 13 0.21
28 50 0.79
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (28 bp):
ATAGTCTTGACGAACTTCCACATATAAA
Found at i:1864672 original size:16 final size:16
Alignment explanation
Indices: 1864625--1864674 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
1864615 GAAACTTTTA
*
1864625 TTTTAATATTTTTAGTGT
1 TTTTAAT-TTTTTA-TAT
* *
1864643 TTTTAATGTATTATAT
1 TTTTAATTTTTTATAT
1864659 TTTTAATTTTTTATAT
1 TTTTAATTTTTTATAT
1864675 AAAAAACAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 16 0.59
17 4 0.15
18 7 0.26
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (16 bp):
TTTTAATTTTTTATAT
Found at i:1869782 original size:17 final size:17
Alignment explanation
Indices: 1869762--1869797 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
1869752 TTAAATCCGA
1869762 AAATTTATTAAAAAAAT
1 AAATTTATTAAAAAAAT
* *
1869779 AAATTTATTTAAAATAT
1 AAATTTATTAAAAAAAT
1869796 AA
1 AA
1869798 CTCAATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATTTATTAAAAAAAT
Found at i:1871013 original size:28 final size:28
Alignment explanation
Indices: 1870978--1871034 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
1870968 TGTTGCTAGG
1870978 ATCGTTTCTCTTTTACTGCTTGTTTGCT
1 ATCGTTTCTCTTTTACTGCTTGTTTGCT
*
1871006 ATCGTTTCTCTTTTACTGCTTTTTTGCT
1 ATCGTTTCTCTTTTACTGCTTGTTTGCT
1871034 A
1 A
1871035 GATTAACTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.09, C:0.21, G:0.12, T:0.58
Consensus pattern (28 bp):
ATCGTTTCTCTTTTACTGCTTGTTTGCT
Found at i:1874581 original size:15 final size:15
Alignment explanation
Indices: 1874539--1874582 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
1874529 TGAAAATTTA
1874539 AAATAATTATAAAAAT
1 AAATAA-TATAAAAAT
*
1874555 -AATGATATTAAAAAT
1 AAATAATA-TAAAAAT
1874570 AAATAATATAAAA
1 AAATAATATAAAA
1874583 TATGTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 2 0.08
15 16 0.67
16 6 0.25
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (15 bp):
AAATAATATAAAAAT
Found at i:1883632 original size:16 final size:16
Alignment explanation
Indices: 1883613--1883648 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
1883603 CTTTTATTCT
*
1883613 TTTTCTTTTTTTTAAG
1 TTTTCTTTTTTTTAAC
1883629 TTTTCTTTTTTTTAAC
1 TTTTCTTTTTTTTAAC
1883645 TTTT
1 TTTT
1883649 AACTTTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.08, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTTCTTTTTTTTAAC
Found at i:1883654 original size:18 final size:17
Alignment explanation
Indices: 1883617--1883667 Score: 61
Period size: 16 Copynumber: 3.0 Consensus size: 17
1883607 TATTCTTTTT
1883617 CTTTTTTTTAAGTTTT--
1 CTTTTTTTTAA-TTTTAA
1883633 CTTTTTTTTAACTTTTAA
1 CTTTTTTTTAA-TTTTAA
*
1883651 CTTTTTCTTAATTTTAA
1 CTTTTTTTTAATTTTAA
1883668 AAAAACTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 15 0.48
17 6 0.19
18 10 0.32
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.69
Consensus pattern (17 bp):
CTTTTTTTTAATTTTAA
Found at i:1883655 original size:17 final size:17
Alignment explanation
Indices: 1883633--1883667 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1883623 TTTAAGTTTT
*
1883633 CTTTTTTTTAACTTTTAA
1 CTTTTTCTTAA-TTTTAA
1883651 CTTTTTCTTAATTTTAA
1 CTTTTTCTTAATTTTAA
1883668 AAAAACTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (17 bp):
CTTTTTCTTAATTTTAA
Found at i:1883879 original size:22 final size:20
Alignment explanation
Indices: 1883844--1883884 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
1883834 TTATATTATT
*
1883844 AAAAATTATATTTAACATTTA
1 AAAAATAATATTTAA-ATTTA
1883865 AAAAATAATATTTTAAATTT
1 AAAAATAATA-TTTAAATTT
1883885 TAAATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
AAAAATAATATTTAAATTTA
Found at i:1884039 original size:7 final size:7
Alignment explanation
Indices: 1884029--1884053 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
1884019 ATTTAAAAAA
1884029 TAAATTT
1 TAAATTT
1884036 TAAATTT
1 TAAATTT
1884043 TAAATTT
1 TAAATTT
1884050 TAAA
1 TAAA
1884054 ATATACATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TAAATTT
Found at i:1884039 original size:14 final size:14
Alignment explanation
Indices: 1884020--1884070 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
1884010 ATATTTAATA
*
1884020 TTTAAAAAATAAAT
1 TTTAAAATATAAAT
* *
1884034 TTTAAATTTTAAAT
1 TTTAAAATATAAAT
*
1884048 TTTAAAATATACA-
1 TTTAAAATATAAAT
1884061 TTTAAAATAT
1 TTTAAAATAT
1884071 TATAAAACTA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
13 10 0.32
14 21 0.68
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTAAAATATAAAT
Found at i:1884045 original size:28 final size:29
Alignment explanation
Indices: 1883996--1884076 Score: 78
Period size: 28 Copynumber: 2.8 Consensus size: 29
1883986 AAAAATAAAT
*
1883996 AAAATATA-TTTAATATATTT-AATATTTAA
1 AAAATAAATTTTAA-ATATTTAAAT-TTTAA
1884025 AAAATAAATTTTAAAT-TTTAAATTTTAA
1 AAAATAAATTTTAAATATTTAAATTTTAA
* * *
1884053 AATATACATTTAAAATATTATAAA
1 AAAATAAATTTTAAATATT-TAAA
1884077 ACTAATAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
28 21 0.48
29 14 0.32
30 9 0.20
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (29 bp):
AAAATAAATTTTAAATATTTAAATTTTAA
Found at i:1884349 original size:57 final size:57
Alignment explanation
Indices: 1884189--1884350 Score: 229
Period size: 58 Copynumber: 2.8 Consensus size: 57
1884179 AATAATTTCA
* *
1884189 AAAATATATATTTAAAA-TTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGAC
1 AAAATATATATTTAAAATTTAA-AATTAATAATAAATAAAATAAATAAGGATAAAGAC
* * * *
1884246 AACATTTAAAATTTAAAATTTAAAATTAATAATAAAT-AAATAAAATAAGGATAAATAC
1 AAAATAT-ATATTTAAAATTTAAAATTAATAATAAATAAAAT-AAATAAGGATAAAGAC
1884304 AAAATATATATTTAAAATTTAAAATTAATAATAAATAAAATAAATAA
1 AAAATATATATTTAAAATTTAAAATTAATAATAAATAAAATAAATAA
1884351 ATTTAAAATA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
57 43 0.47
58 45 0.49
59 4 0.04
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (57 bp):
AAAATATATATTTAAAATTTAAAATTAATAATAAATAAAATAAATAAGGATAAAGAC
Found at i:1884448 original size:13 final size:14
Alignment explanation
Indices: 1884422--1884450 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1884412 AACTTAAAAT
1884422 AAGAAAAAGAATAA
1 AAGAAAAAGAATAA
1884436 AAGAAAAAG-ATAA
1 AAGAAAAAGAATAA
1884449 AA
1 AA
1884451 CTTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (14 bp):
AAGAAAAAGAATAA
Found at i:1884449 original size:37 final size:37
Alignment explanation
Indices: 1884383--1884457 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
1884373 TTTTTATAAT
*
1884383 TAAGAAAAAGTTAAAAGTTAAAAAAATAAAACTTAAAA
1 TAAGAAAAAGATAAAAG-TAAAAAAATAAAACTTAAAA
*
1884421 TAAGAAAAAGAATAAAAG-AAAAAGATAAAACTTAAAA
1 TAAGAAAAAG-ATAAAAGTAAAAAAATAAAACTTAAAA
1884458 AAAAAGTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
37 18 0.53
38 10 0.29
39 6 0.18
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.17
Consensus pattern (37 bp):
TAAGAAAAAGATAAAAGTAAAAAAATAAAACTTAAAA
Found at i:1892032 original size:32 final size:32
Alignment explanation
Indices: 1891991--1892054 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
1891981 GATGGAAAGG
1891991 GAATTCTTTGATTAGCCTCAGAAGTTTTTCTT
1 GAATTCTTTGATTAGCCTCAGAAGTTTTTCTT
1892023 GAATTCTTTGATTAGCCTCAGAAGTTTTTCTT
1 GAATTCTTTGATTAGCCTCAGAAGTTTTTCTT
1892055 CTTCTCATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.47
Consensus pattern (32 bp):
GAATTCTTTGATTAGCCTCAGAAGTTTTTCTT
Found at i:1899821 original size:40 final size:40
Alignment explanation
Indices: 1899777--1899942 Score: 183
Period size: 40 Copynumber: 4.2 Consensus size: 40
1899767 ATTGTTTGAT
*
1899777 TGCACATATGTGCCCCTGTTTGTACTTCAATACCCCTGAA
1 TGCACATACGTGCCCCTGTTTGTACTTCAATACCCCTGAA
* *
1899817 TGCACATACGTGCCCCTGCTTGTACTTCAGTACCCCT-AA
1 TGCACATACGTGCCCCTGTTTGTACTTCAATACCCCTGAA
* *** * *
1899856 TTGCACATACGTGCCCTTGTTTGTACTTTGGTACCCTTAAA
1 -TGCACATACGTGCCCCTGTTTGTACTTCAATACCCCTGAA
* * * * *
1899897 TGCACATATGTGCCCATATTTGTACTTCGATA-CCTTGAA
1 TGCACATACGTGCCCCTGTTTGTACTTCAATACCCCTGAA
1899936 TGCACAT
1 TGCACAT
1899943 TTTGTAATGG
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 15 0.14
40 93 0.85
41 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (40 bp):
TGCACATACGTGCCCCTGTTTGTACTTCAATACCCCTGAA
Found at i:1899852 original size:20 final size:20
Alignment explanation
Indices: 1899789--1899858 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 20
1899779 CACATATGTG
* *
1899789 CCCCTGTTTGTACTTCAATA
1 CCCCTGATTGTACTTCAGTA
* * * *
1899809 CCCCTGAATGCACAT-ACGTG
1 CCCCTGATTGTACTTCA-GTA
*
1899829 CCCCTGCTTGTACTTCAGTA
1 CCCCTGATTGTACTTCAGTA
*
1899849 CCCCTAATTG
1 CCCCTGATTG
1899859 CACATACGTG
Statistics
Matches: 35, Mismatches: 13, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
19 1 0.03
20 33 0.94
21 1 0.03
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.31
Consensus pattern (20 bp):
CCCCTGATTGTACTTCAGTA
Found at i:1928213 original size:22 final size:22
Alignment explanation
Indices: 1928158--1928213 Score: 53
Period size: 22 Copynumber: 2.5 Consensus size: 22
1928148 AGGATACTTT
* *
1928158 TTTTAATATTATTTTCTTATTA
1 TTTTACTATTATTTTCTTATCA
*
1928180 TTTT-CTCCTTATTTTGC-TATCA
1 TTTTACT-ATTATTTT-CTTATCA
1928202 TTTTACTATTAT
1 TTTTACTATTAT
1928214 GTTACTACTA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
21 1 0.04
22 23 0.85
23 3 0.11
ACGTcount: A:0.21, C:0.12, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTACTATTATTTTCTTATCA
Found at i:1928408 original size:17 final size:16
Alignment explanation
Indices: 1928365--1928410 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
1928355 TTATTGAGAA
*
1928365 ATATTTATTTTAATGT
1 ATATATATTTTAATGT
* *
1928381 ATTTGTATTTTAATGT
1 ATATATATTTTAATGT
1928397 AGTATATATTTTAA
1 A-TATATATTTTAA
1928411 AATTATATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 15 0.60
17 10 0.40
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (16 bp):
ATATATATTTTAATGT
Found at i:1940240 original size:28 final size:28
Alignment explanation
Indices: 1940208--1940267 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
1940198 TTGAACTCTG
1940208 ATATCATGTTAAGCATCCTTCCTAAAAC
1 ATATCATGTTAAGCATCCTTCCTAAAAC
1940236 ATATCATGTTAAGCATCCTTCCTAAAAC
1 ATATCATGTTAAGCATCCTTCCTAAAAC
1940264 -TATC
1 ATATC
1940268 TGGTAATAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 4 0.12
28 28 0.88
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.33
Consensus pattern (28 bp):
ATATCATGTTAAGCATCCTTCCTAAAAC
Found at i:1944263 original size:20 final size:18
Alignment explanation
Indices: 1944206--1944264 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 18
1944196 GATATTATAA
*
1944206 AAATATATTATATAATTTAT
1 AAAT-TATTATATAA-ATAT
1944226 AAATTATATATATGAAATAT
1 AAATTAT-TATAT-AAATAT
1944246 AAAGTTAGTTATATAAATA
1 AAA-TTA-TTATATAAATA
1944265 ATTAAAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
19 3 0.09
20 20 0.59
21 10 0.29
22 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
AAATTATTATATAAATAT
Found at i:1947771 original size:18 final size:18
Alignment explanation
Indices: 1947748--1947790 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
1947738 TGTATGATTA
*
1947748 TGCTAACGAGAACCTTCC
1 TGCTAACGAAAACCTTCC
1947766 TGCTAACGAAAACCTTCC
1 TGCTAACGAAAACCTTCC
1947784 TGCTAAC
1 TGCTAAC
1947791 ATCCAACGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.30, C:0.33, G:0.14, T:0.23
Consensus pattern (18 bp):
TGCTAACGAAAACCTTCC
Found at i:1956745 original size:19 final size:20
Alignment explanation
Indices: 1956721--1956761 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
1956711 ATTCTAGTGA
* *
1956721 AATATTTAATTTTAT-TTTT
1 AATATTCAATTTGATATTTT
1956740 AATATTCAATTTGATATTTT
1 AATATTCAATTTGATATTTT
1956760 AA
1 AA
1956762 CTTTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (20 bp):
AATATTCAATTTGATATTTT
Found at i:1957057 original size:5 final size:5
Alignment explanation
Indices: 1957036--1957070 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
1957026 TCGGTCACGC
*
1957036 TTCTT TTCATC TTCTT TTCTT TTCTT TTCTT TTCT
1 TTCTT TTC-TT TTCTT TTCTT TTCTT TTCTT TTCT
1957071 CTGACACTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (5 bp):
TTCTT
Found at i:1961030 original size:15 final size:15
Alignment explanation
Indices: 1961010--1961040 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1961000 GCAACTTAAT
1961010 TAAGTTTTTAAATAA
1 TAAGTTTTTAAATAA
1961025 TAAGTTTTTAAATAA
1 TAAGTTTTTAAATAA
1961040 T
1 T
1961041 TTAATTAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (15 bp):
TAAGTTTTTAAATAA
Found at i:1964826 original size:92 final size:92
Alignment explanation
Indices: 1964717--1964907 Score: 346
Period size: 92 Copynumber: 2.1 Consensus size: 92
1964707 TGTTACCCTC
1964717 ATATGATATCCTTGATTCCTTTTAGTTAAATTCGTTCACTCAATACAATATTATTTTATCTCATT
1 ATATGATATCCTTGATTCCTTTTAGTTAAATTCGTTCACTCAATACAATATTATTTTATCTCATT
*
1964782 GTCACCATTGTGTCTTCTTAATGATTA
66 GTCACCATTGTGTATTCTTAATGATTA
*
1964809 ATATGATATCCTTGATTCCTTTTAGTTAAATTCGTTCACTCAATACAATCTTATTTTATCTCATT
1 ATATGATATCCTTGATTCCTTTTAGTTAAATTCGTTCACTCAATACAATATTATTTTATCTCATT
* *
1964874 GTCATCGTTGTGTATTCTTAATGATTA
66 GTCACCATTGTGTATTCTTAATGATTA
1964901 ATATGAT
1 ATATGAT
1964908 CACTGTCAAT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 95 1.00
ACGTcount: A:0.27, C:0.16, G:0.09, T:0.47
Consensus pattern (92 bp):
ATATGATATCCTTGATTCCTTTTAGTTAAATTCGTTCACTCAATACAATATTATTTTATCTCATT
GTCACCATTGTGTATTCTTAATGATTA
Found at i:1969126 original size:36 final size:36
Alignment explanation
Indices: 1969081--1969155 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
1969071 AAATCACAAA
*
1969081 TTTACATATAAGTT-TATCAAGATTTAATTATATGTG
1 TTTAAATAT-AGTTATATCAAGATTTAATTATATGTG
* ** *
1969117 TTTAAATATATTTATATTTATATTTAATTATATGTG
1 TTTAAATATAGTTATATCAAGATTTAATTATATGTG
1969153 TTT
1 TTT
1969156 GAGGATAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
35 3 0.09
36 30 0.91
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.55
Consensus pattern (36 bp):
TTTAAATATAGTTATATCAAGATTTAATTATATGTG
Found at i:1969772 original size:28 final size:27
Alignment explanation
Indices: 1969735--1969787 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
1969725 TTTAAAACAA
* *
1969735 AAAACATTTAGATTTTTTATTTTAGAAT
1 AAAACATTTAAAGTTTTT-TTTTAGAAT
*
1969763 AAAACGTTTAAAGTTTTTTTTTAGA
1 AAAACATTTAAAGTTTTTTTTTAGA
1969788 TTTTATTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (27 bp):
AAAACATTTAAAGTTTTTTTTTAGAAT
Found at i:1972905 original size:19 final size:20
Alignment explanation
Indices: 1972883--1972932 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
1972873 AGTGCCTAGG
*
1972883 CCATGTGGAGTCT-ACACGC
1 CCATGTGGAGGCTAACACGC
*
1972902 CCATGTGAAGGCTACACACGC
1 CCATGTGGAGGCTA-ACACGC
1972923 CCATGTGGAG
1 CCATGTGGAG
1972933 AGGACACACG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 11 0.42
21 15 0.58
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (20 bp):
CCATGTGGAGGCTAACACGC
Found at i:1972939 original size:21 final size:20
Alignment explanation
Indices: 1972896--1972943 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 20
1972886 TGTGGAGTCT
1972896 ACACGCCCATGTGAAGGCTAC
1 ACACGCCCATGTGAAGGC-AC
1972917 ACACGCCCATGTGGAGAGG-AC
1 ACACGCCCATGT-GA-AGGCAC
1972938 ACACGC
1 ACACGC
1972944 ATGTGTAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 20 0.80
22 2 0.08
23 3 0.12
ACGTcount: A:0.29, C:0.33, G:0.27, T:0.10
Consensus pattern (20 bp):
ACACGCCCATGTGAAGGCAC
Found at i:1973203 original size:17 final size:17
Alignment explanation
Indices: 1973161--1973203 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
1973151 TGTGTGAGCC
*
1973161 GCCTGTGTGCGACACAT
1 GCCTGTGTGCAACACAT
*
1973178 GCCTATGTGCAACACAT
1 GCCTGTGTGCAACACAT
*
1973195 GCTTGTGTG
1 GCCTGTGTG
1973204 GCCTCCCGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.28
Consensus pattern (17 bp):
GCCTGTGTGCAACACAT
Found at i:1976686 original size:24 final size:24
Alignment explanation
Indices: 1976654--1976723 Score: 131
Period size: 24 Copynumber: 2.9 Consensus size: 24
1976644 AACGTCCCTC
1976654 CTTCAGCACCTGGCTTTCCTGGCT
1 CTTCAGCACCTGGCTTTCCTGGCT
1976678 CTTCAGCACCTGGCTTTCCTGGCT
1 CTTCAGCACCTGGCTTTCCTGGCT
*
1976702 CTTCAGCATCTGGCTTTCCTGG
1 CTTCAGCACCTGGCTTTCCTGG
1976724 TTTCCCTTCG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.09, C:0.36, G:0.21, T:0.34
Consensus pattern (24 bp):
CTTCAGCACCTGGCTTTCCTGGCT
Found at i:1978545 original size:60 final size:61
Alignment explanation
Indices: 1978433--1978547 Score: 146
Period size: 60 Copynumber: 1.9 Consensus size: 61
1978423 TTTTTTTTCT
* * **
1978433 AATTTGATACTTAAACTTGACATTTTTTTCTTAAATTGGTACTTGATCTTTTTTTGGGTTC
1 AATTTGATACCTAAACTTGACATCTTTTTCTTAAATTGGTACTCAATCTTTTTTTGGGTTC
* *
1978494 AATTTGGTACCTAAACTTGAC-TCTTTTTCTTAATTTGGTA-TCCAAT-TTTTTTTG
1 AATTTGATACCTAAACTTGACATCTTTTTCTTAAATTGGTACT-CAATCTTTTTTTG
1978548 TTCGATTTGG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
59 9 0.19
60 19 0.40
61 19 0.40
ACGTcount: A:0.23, C:0.13, G:0.12, T:0.52
Consensus pattern (61 bp):
AATTTGATACCTAAACTTGACATCTTTTTCTTAAATTGGTACTCAATCTTTTTTTGGGTTC
Found at i:1979118 original size:20 final size:20
Alignment explanation
Indices: 1979093--1979130 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1979083 AAAAAAAAAC
* *
1979093 TATATTCGGATACTAAATGT
1 TATATTCAGATACCAAATGT
1979113 TATATTCAGATACCAAAT
1 TATATTCAGATACCAAAT
1979131 TAAAAAAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (20 bp):
TATATTCAGATACCAAATGT
Found at i:1980318 original size:6 final size:6
Alignment explanation
Indices: 1980307--1980336 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
1980297 GAAGAGTAAA
1980307 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
1980337 CAGACTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:1980655 original size:24 final size:24
Alignment explanation
Indices: 1980628--1980679 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
1980618 GGTTGAGTCG
* *
1980628 TTGGCA-ATGTTGGTATCGTTGGCA
1 TTGGCAGA-GTTGGGATCATTGGCA
1980652 TTGGCAGAGTTGGGATCATTGGCA
1 TTGGCAGAGTTGGGATCATTGGCA
1980676 TTGG
1 TTGG
1980680 AGGTAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.17, C:0.12, G:0.37, T:0.35
Consensus pattern (24 bp):
TTGGCAGAGTTGGGATCATTGGCA
Found at i:1986696 original size:57 final size:57
Alignment explanation
Indices: 1986608--1986724 Score: 216
Period size: 57 Copynumber: 2.1 Consensus size: 57
1986598 TCAAAAGCTT
* *
1986608 AGTAGGAGCAATTACTACACATGGAGTCTTTAAATAAGTTTTATCTGAAAAGAAAAG
1 AGTAGGAGCAATTACAACACATGGAATCTTTAAATAAGTTTTATCTGAAAAGAAAAG
1986665 AGTAGGAGCAATTACAACACATGGAATCTTTAAATAAGTTTTATCTGAAAAGAAAAG
1 AGTAGGAGCAATTACAACACATGGAATCTTTAAATAAGTTTTATCTGAAAAGAAAAG
1986722 AGT
1 AGT
1986725 GGTGGAGTGT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.27
Consensus pattern (57 bp):
AGTAGGAGCAATTACAACACATGGAATCTTTAAATAAGTTTTATCTGAAAAGAAAAG
Found at i:1986810 original size:16 final size:18
Alignment explanation
Indices: 1986773--1986812 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
1986763 GAATTCTTAT
*
1986773 TAAAATAAAATATAGTAG
1 TAAAATAAAATATAGAAG
1986791 TAAAATAAAATA-A-AAG
1 TAAAATAAAATATAGAAG
1986807 TAAAAT
1 TAAAAT
1986813 CCATATAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 1 0.05
18 12 0.57
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (18 bp):
TAAAATAAAATATAGAAG
Found at i:1991510 original size:14 final size:14
Alignment explanation
Indices: 1991491--1991520 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1991481 AATTTGTGTG
1991491 TTCTTTATTTTTCT
1 TTCTTTATTTTTCT
*
1991505 TTCTTTTTTTTTCT
1 TTCTTTATTTTTCT
1991519 TT
1 TT
1991521 GCGATACATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.83
Consensus pattern (14 bp):
TTCTTTATTTTTCT
Found at i:1994609 original size:13 final size:13
Alignment explanation
Indices: 1994591--1994615 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1994581 ACCATTCACT
1994591 AATTCCCTTATTG
1 AATTCCCTTATTG
1994604 AATTCCCTTATT
1 AATTCCCTTATT
1994616 TATATAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.48
Consensus pattern (13 bp):
AATTCCCTTATTG
Found at i:1997846 original size:14 final size:14
Alignment explanation
Indices: 1997827--1997872 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 14
1997817 GTTAGCGAAT
1997827 AAAATAAATAAATA
1 AAAATAAATAAATA
*
1997841 AAAATATATAAAATA
1 AAAATAAAT-AAATA
1997856 AAATATAAATAGAATA
1 AAA-ATAAATA-AATA
1997872 A
1 A
1997873 TTTATATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 8 0.30
15 9 0.33
16 10 0.37
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (14 bp):
AAAATAAATAAATA
Found at i:2000718 original size:93 final size:93
Alignment explanation
Indices: 2000559--2000729 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
2000549 AGGATATTTG
*
2000559 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATCGATGCGAATGTCCGAGCTCGTCGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATCGATGCGAATGCCCGAGCTCGTCGAG
2000624 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
2000652 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATCGATGCGAATGCCCGAGCTCGTCGAG
2000717 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
2000730 TGCTTATGGG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATCGATGCGAATGCCCGAGCTCGTCGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:2000736 original size:46 final size:46
Alignment explanation
Indices: 2000564--2000738 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
2000554 ATTTGGGCAT
* *
2000564 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATCGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * *
2000610 CCGAGCTCGTCGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
*
2000655 ATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGC
1 --CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
**
2000703 CCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
2000739 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 26 0.24
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:2016623 original size:89 final size:90
Alignment explanation
Indices: 2016459--2016650 Score: 223
Period size: 89 Copynumber: 2.1 Consensus size: 90
2016449 TGTGGCTGAG
* *
2016459 CCACCAGTG-TTGCAGGTTAATACGCTGCTAGTAGTTGTGATTACACAACGAGTTTACAGATAAA
1 CCACCAGTGTTTGCAGGTTAATACGCTGCTAGTACTTGTGAATACACAACGAGTTTACAGATAAA
* *
2016523 AGATGCCAGTATGAATTATGGAT-A
66 AGATACCAGTATAAATTATGGATAA
* * *
2016547 CCACCAGTGTTTTCAGGTTAATACGCTG-TCAGTACTTGTGAATACACAACTTAG-TTGCAGATT
1 CCACCAGTGTTTGCAGGTTAATACGCTGCT-AGTACTTGTGAATACACAAC-GAGTTTACAGA-T
* * *
2016610 AAAA-CTACTAGTATAAATTGTGGATAAA
63 AAAAGATACCAGTATAAATTATGGAT-AA
2016638 CCACCAGTGTTTG
1 CCACCAGTGTTTG
2016651 TAGATTATTA
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
88 10 0.11
89 57 0.66
90 7 0.08
91 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (90 bp):
CCACCAGTGTTTGCAGGTTAATACGCTGCTAGTACTTGTGAATACACAACGAGTTTACAGATAAA
AGATACCAGTATAAATTATGGATAA
Found at i:2017347 original size:12 final size:12
Alignment explanation
Indices: 2017330--2017363 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
2017320 CTGATTCGCT
2017330 CTTAAAAGAACA
1 CTTAAAAGAACA
*
2017342 CTTAAAAGAACT
1 CTTAAAAGAACA
2017354 CTTAAAAGAA
1 CTTAAAAGAA
2017364 GAAAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.09, T:0.21
Consensus pattern (12 bp):
CTTAAAAGAACA
Found at i:2041485 original size:46 final size:46
Alignment explanation
Indices: 2041425--2041637 Score: 284
Period size: 46 Copynumber: 4.6 Consensus size: 46
2041415 TTTGACGTGA
* * * * * *
2041425 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
2041471 TGCCATGGTATCTTTCAACCATGATCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
2041517 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
2041563 TGCCATGGTATCTTTCAACCATGGTCTTTCACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
2041609 TGCCATGGTATCTTTCAACCATGGTCTTA
1 TGCCATGGTATCTTTCAACCATGGTCTTA
2041638 TTGTAATACC
Statistics
Matches: 149, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.03
46 145 0.97
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:2050955 original size:11 final size:11
Alignment explanation
Indices: 2050939--2050986 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
2050929 CTTTATATAC
2050939 TAATAAAATAA
1 TAATAAAATAA
*
2050950 TAATAAAATATCT
1 TAATAAAATA--A
* *
2050963 TATTAAAATAT
1 TAATAAAATAA
2050974 TAATAAAATAA
1 TAATAAAATAA
2050985 TA
1 TA
2050987 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:2055008 original size:181 final size:182
Alignment explanation
Indices: 2054684--2055025 Score: 521
Period size: 181 Copynumber: 1.9 Consensus size: 182
2054674 ATGAGATCAG
*
2054684 ATTTGAAAATAATTTTGAGATTGGCTTCAATTAAAAACTAAGGACCAATTTGGAAAAAGGAGGAA
1 ATTTGAAAATAAATTTGAGATTGGCTTCAATTAAAAACTAAGGACCAATTTGGAAAAAGGAGGAA
* *
2054749 GCTATAGGTGGTCAAAGGGTCAAAAGCCCAATTTTTTAAAAATTAGTTGGTTATAAAATCACCTA
66 ACTATAGGTGGTCAAAGGGTCAAAAGCCCAATTTTTTAAAAATTAGTTGGTTATAAAACCACCTA
2054814 CAATCCATTCCCTCCACACTT-TCAACCATTTCAAAACTTGTTAGTCTAAAAA
131 CAATCCATTCCCTCCACACTTCT-AACCATTTCAAAACTTGTTAGTCTAAAAA
* **
2054866 ATTTGAAGATAAATTTGA-ATTGGCTTCAATTGGAAACTAAGGACCAATTTGGAAAAA-GAGGAA
1 ATTTGAAAATAAATTTGAGATTGGCTTCAATTAAAAACTAAGGACCAATTTGGAAAAAGGAGGAA
* * *
2054929 ACTATATGTGGTCAAAGGGTCAAAAGCCCAA-TTTTTAAAAATTGGTTGGCTATATAAGACCACC
66 ACTATAGGTGGTCAAAGGGTCAAAAGCCCAATTTTTTAAAAATTAGTTGG-T-TATAAAACCACC
* * *
2054993 TGCAGTCCTTTCCCTCCACACTTCTAACCATTT
129 TACAATCCATTCCCTCCACACTTCTAACCATTT
2055026 AACCCTCACT
Statistics
Matches: 145, Mismatches: 12, Indels: 7
0.88 0.07 0.04
Matches are distributed among these distances:
179 17 0.12
180 36 0.25
181 75 0.52
182 17 0.12
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (182 bp):
ATTTGAAAATAAATTTGAGATTGGCTTCAATTAAAAACTAAGGACCAATTTGGAAAAAGGAGGAA
ACTATAGGTGGTCAAAGGGTCAAAAGCCCAATTTTTTAAAAATTAGTTGGTTATAAAACCACCTA
CAATCCATTCCCTCCACACTTCTAACCATTTCAAAACTTGTTAGTCTAAAAA
Found at i:2063809 original size:45 final size:46
Alignment explanation
Indices: 2063751--2063945 Score: 252
Period size: 45 Copynumber: 4.3 Consensus size: 46
2063741 AAATCTTTGC
* * * * *
2063751 CAACTATGGTCTTACTCTTTTC-TGTCATGTTGCCATGGTATCTTT
1 CAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
* ** * * *
2063796 CAACCATGATCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTT
1 CAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
*
2063842 CAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATC-TT
1 CAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
*
2063887 CAACCATGGTCTTTCACATTTCATATCAGGTTGCCATGGTATCTTT
1 CAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
2063933 CAACCAT-GTCTTA
1 CAACCATGGTCTTA
2063946 TGTAATACCC
Statistics
Matches: 134, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
45 67 0.50
46 67 0.50
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
CAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
Found at i:2063831 original size:46 final size:46
Alignment explanation
Indices: 2063779--2063946 Score: 243
Period size: 46 Copynumber: 3.7 Consensus size: 46
2063769 TTTCTGTCAT
* * * * *
2063779 GTTGCCATGGTATCTTTCAACCATGATCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
* *
2063825 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
2063871 GTTGCCATGGTATC-TTCAACCATGGTCTT-TCACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTAT-ACATTTCATATCAG
2063916 GTTGCCATGGTATCTTTCAACCAT-GTCTTAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTAT
2063947 GTAATACCCC
Statistics
Matches: 110, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
45 47 0.43
46 63 0.57
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
Found at i:2063920 original size:91 final size:91
Alignment explanation
Indices: 2063779--2063945 Score: 257
Period size: 91 Copynumber: 1.8 Consensus size: 91
2063769 TTTCTGTCAT
* * *
2063779 GTTGCCATGGTATCTTTCAACCATGATCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGATCTTATACATTTCATATCACGTTGCCATGGTATCTTTCA
2063844 ACCATGGTCTTACACATCTCATATCAG
66 ACCAT-GTCTTACACATCTCATATCAG
* *
2063871 GTTGCCATGGTATC-TTCAACCATGGTCTT-TCACATTTCATATCAGGTTGCCATGGTATCTTTC
1 GTTGCCATGGTATCTTTCAACCATGATCTTAT-ACATTTCATATCACGTTGCCATGGTATCTTTC
2063934 AACCATGTCTTA
65 AACCATGTCTTA
2063946 TGTAATACCC
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
90 7 0.10
91 48 0.70
92 14 0.20
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (91 bp):
GTTGCCATGGTATCTTTCAACCATGATCTTATACATTTCATATCACGTTGCCATGGTATCTTTCA
ACCATGTCTTACACATCTCATATCAG
Found at i:2073265 original size:11 final size:11
Alignment explanation
Indices: 2073249--2073296 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
2073239 CTTTATATAC
2073249 TAATAAAATAA
1 TAATAAAATAA
*
2073260 TAATAAAATATCT
1 TAATAAAATA--A
* *
2073273 TATTAAAATAT
1 TAATAAAATAA
2073284 TAATAAAATAA
1 TAATAAAATAA
2073295 TA
1 TA
2073297 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:2077344 original size:184 final size:184
Alignment explanation
Indices: 2077016--2077375 Score: 569
Period size: 184 Copynumber: 2.0 Consensus size: 184
2077006 ATGAGATCAG
* *
2077016 ATTTGAAAATAATTTTGAGATTGGCTTCAATTAAAAACTAAGGACCAATTTGGAAAAAGGAGGAA
1 ATTTGAAAATAAATTTGAGATTGGCTTCAATTAAAAACTAAGGACCAATTTGGAAAAAAGAGGAA
* * *
2077081 GCTATAGGTGGTCAAAGGGTCAAAAGCCCAATTTTTAAAAATTAGTTGGTTATATAAAATCACCT
66 ACTATAGGTGGTCAAAGGGTCAAAAGCCCAATTTTTAAAAATTAGTTGGCTATATAAAACCACCT
2077146 ACAATCCATTCCCTCCACACTT-TCAACCATTTCAAAACTTTGTTAGGTCTAAAA
131 ACAATCCATTCCCTCCACACTTCT-AACCATTTCAAAACTTTGTTAGGTCTAAAA
* **
2077200 ATTTGAAGATAAATTTGAGATTGGCTTCAATTGGAAACTAAGGACCAATTTGGAAAAAAGAGGAA
1 ATTTGAAAATAAATTTGAGATTGGCTTCAATTAAAAACTAAGGACCAATTTGGAAAAAAGAGGAA
* * *
2077265 ACTATATGTGGTCAAAGGGTCAAAAGCCCAATTTTTAAAAATTGGTTGGCTATATAAGACCACCT
66 ACTATAGGTGGTCAAAGGGTCAAAAGCCCAATTTTTAAAAATTAGTTGGCTATATAAAACCACCT
* * * *
2077330 GCAGTCCTTTCCCTCCACACTTCTAACCATTTCAAAATTTTGTTAG
131 ACAATCCATTCCCTCCACACTTCTAACCATTTCAAAACTTTGTTAG
2077376 ATCTGAAATC
Statistics
Matches: 160, Mismatches: 15, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
184 159 0.99
185 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (184 bp):
ATTTGAAAATAAATTTGAGATTGGCTTCAATTAAAAACTAAGGACCAATTTGGAAAAAAGAGGAA
ACTATAGGTGGTCAAAGGGTCAAAAGCCCAATTTTTAAAAATTAGTTGGCTATATAAAACCACCT
ACAATCCATTCCCTCCACACTTCTAACCATTTCAAAACTTTGTTAGGTCTAAAA
Found at i:2077856 original size:43 final size:42
Alignment explanation
Indices: 2077791--2077950 Score: 212
Period size: 43 Copynumber: 3.7 Consensus size: 42
2077781 GCTGCAAAAA
* * *
2077791 TTAGGGGCGTTTTTTAAAAAACGCCGCTAAAGACCATGACCT
1 TTAGCGGCGCTTTTTAACAAACGCCGCTAAAGACCATGACCT
*
2077833 TTAGCGGCGCTTTTTAAGCAAACGCTGCTAAAGACCATGACCT
1 TTAGCGGCGCTTTTTAA-CAAACGCCGCTAAAGACCATGACCT
* * *
2077876 TTAGCGGCGCTTTTTTCACAAACGCCGCTAAAGATCATAACCT
1 TTAGCGGCGC-TTTTTAACAAACGCCGCTAAAGACCATGACCT
* *
2077919 TTAGCGGCACTTTTCTCACAAACGCCGCTAAA
1 TTAGCGGCGCTTTT-TAACAAACGCCGCTAAA
2077951 AATAATGATA
Statistics
Matches: 106, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
42 19 0.18
43 81 0.76
44 6 0.06
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (42 bp):
TTAGCGGCGCTTTTTAACAAACGCCGCTAAAGACCATGACCT
Found at i:2082144 original size:8 final size:8
Alignment explanation
Indices: 2082128--2082203 Score: 72
Period size: 7 Copynumber: 10.1 Consensus size: 8
2082118 GACTAAAATA
2082128 TTAAA-TT
1 TTAAATTT
2082135 TTAAATTT
1 TTAAATTT
*
2082143 TTAAGTTT
1 TTAAATTT
*
2082151 TT-TATTT
1 TTAAATTT
**
2082158 TTTTATTT
1 TTAAATTT
*
2082166 TT-TATTT
1 TTAAATTT
2082173 TTAAA-TT
1 TTAAATTT
2082180 TTAAA-TT
1 TTAAATTT
2082187 TTAAATTT
1 TTAAATTT
2082195 TTAAATTT
1 TTAAATTT
2082203 T
1 T
2082204 GAGTTTATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
7 31 0.51
8 30 0.49
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.68
Consensus pattern (8 bp):
TTAAATTT
Found at i:2082146 original size:15 final size:15
Alignment explanation
Indices: 2082128--2082203 Score: 73
Period size: 15 Copynumber: 5.1 Consensus size: 15
2082118 GACTAAAATA
2082128 TTAAATTTTAAATTT
1 TTAAATTTTAAATTT
* **
2082143 TTAAGTTTTTTATTT
1 TTAAATTTTAAATTT
** **
2082158 TTTTATTTTTTATTT
1 TTAAATTTTAAATTT
2082173 TTAAATTTTAAA-TT
1 TTAAATTTTAAATTT
2082187 TTAAATTTTTAAATTT
1 TTAAA-TTTTAAATTT
2082203 T
1 T
2082204 GAGTTTATTT
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
14 7 0.14
15 39 0.80
16 3 0.06
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.68
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:2082228 original size:52 final size:45
Alignment explanation
Indices: 2082128--2082220 Score: 125
Period size: 45 Copynumber: 2.0 Consensus size: 45
2082118 GACTAAAATA
* *
2082128 TTAAATTTTAAATTTTTAAGTTTTTTATTTTTTTATTTTTTATTT
1 TTAAATTTTAAATTTTTAAATTTTTAATTTTTTTATTTTTTATTT
2082173 TTAAATTTTAAA-TTTTAAATTTTTAAATTTTGAGTTTATTTTTTATTT
1 TTAAATTTTAAATTTTTAAATTTTT-AATTTT---TTTATTTTTTATTT
2082221 CGGTTTAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
44 11 0.26
45 17 0.40
48 14 0.33
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (45 bp):
TTAAATTTTAAATTTTTAAATTTTTAATTTTTTTATTTTTTATTT
Found at i:2082807 original size:7 final size:7
Alignment explanation
Indices: 2082795--2082858 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
2082785 CCCATGGCCA
2082795 TTAAACC
1 TTAAACC
2082802 TTAAACC
1 TTAAACC
*
2082809 ATAAAACC
1 -TTAAACC
*
2082817 CTAAACC
1 TTAAACC
* *
2082824 ATAGACC
1 TTAAACC
2082831 TTAAACC
1 TTAAACC
**
2082838 TTAAATA
1 TTAAACC
2082845 TTAAACC
1 TTAAACC
*
2082852 GTAAACC
1 TTAAACC
2082859 AAAAAATAAA
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
7 38 0.86
8 6 0.14
ACGTcount: A:0.47, C:0.27, G:0.03, T:0.23
Consensus pattern (7 bp):
TTAAACC
Found at i:2082815 original size:15 final size:15
Alignment explanation
Indices: 2082792--2082842 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
2082782 ATACCCATGG
*
2082792 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
2082807 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
*
2082822 CCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
2082836 CCTTAAA
1 CCATAAA
2082843 TATTAAACCG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
14 11 0.38
15 18 0.62
ACGTcount: A:0.47, C:0.29, G:0.02, T:0.22
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:2083022 original size:37 final size:37
Alignment explanation
Indices: 2082970--2083041 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
2082960 ACGTTTTTTT
* * *
2082970 GGGGTTTAGGGTTTT-AGAAGTTATGGTTTAGTGTTTA
1 GGGGTTTAGGATTTTAAG-AGTTATAGATTAGTGTTTA
*
2083007 GGGGTTTAGTATTTTAAGAGTTATAGATTAGTGTT
1 GGGGTTTAGGATTTTAAGAGTTATAGATTAGTGTT
2083042 CATGATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 28 0.93
38 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (37 bp):
GGGGTTTAGGATTTTAAGAGTTATAGATTAGTGTTTA
Found at i:2083169 original size:41 final size:41
Alignment explanation
Indices: 2083080--2083180 Score: 130
Period size: 41 Copynumber: 2.4 Consensus size: 41
2083070 GGGGTTATAT
** *
2083080 GACTTTTAGCGGCGTTTTACCAAAAGTGCCACTAATGCTCC
1 GACTTTTAGCGGCGTTTTACCAAAAGCCCCACTAATGCCCC
* * * *
2083121 AATTTTTAGCGGCGTTTTACCAAAAGCCCCGCTATTGCCCC
1 GACTTTTAGCGGCGTTTTACCAAAAGCCCCACTAATGCCCC
2083162 GACTTTTAGCGGCGCTTTT
1 GACTTTTAGCGGCG-TTTT
2083181 GGTGCTCTGT
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 46 0.92
42 4 0.08
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.32
Consensus pattern (41 bp):
GACTTTTAGCGGCGTTTTACCAAAAGCCCCACTAATGCCCC
Found at i:2083241 original size:41 final size:41
Alignment explanation
Indices: 2083183--2083316 Score: 211
Period size: 41 Copynumber: 3.3 Consensus size: 41
2083173 GCGCTTTTGG
2083183 TGCTCTG-TTTTAGCGGCGTTTTAACAAAAAATGCCGCTAT
1 TGCTCTGTTTTTAGCGGCGTTTTAACAAAAAATGCCGCTAT
*
2083223 TGCTCTGTTTTTAGCGGCGTTTTAACAAAAAACGCCGCTAT
1 TGCTCTGTTTTTAGCGGCGTTTTAACAAAAAATGCCGCTAT
* *
2083264 TGCTTTGTTTTTAGCGGCGTTTT-ACCAAAAATGCCGC-AT
1 TGCTCTGTTTTTAGCGGCGTTTTAACAAAAAATGCCGCTAT
2083303 TGCTCTGTGTTTTA
1 TGCTCTGT-TTTTA
2083317 CAATTTTTGC
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
39 9 0.10
40 24 0.28
41 54 0.62
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (41 bp):
TGCTCTGTTTTTAGCGGCGTTTTAACAAAAAATGCCGCTAT
Found at i:2083582 original size:56 final size:56
Alignment explanation
Indices: 2083509--2083620 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
2083499 TTTAGACAAC
2083509 TAATGAGCAACATTTGTTTCTATTTTGCTTTGCATGCAAAAATCATTTGAGGGCAA
1 TAATGAGCAACATTTGTTTCTATTTTGCTTTGCATGCAAAAATCATTTGAGGGCAA
2083565 TAATGAGCAACATTTGTTTCTATTTTGCTTTGCATGCAAAAATCATTTGAGGGCAA
1 TAATGAGCAACATTTGTTTCTATTTTGCTTTGCATGCAAAAATCATTTGAGGGCAA
2083621 AATACAAAGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (56 bp):
TAATGAGCAACATTTGTTTCTATTTTGCTTTGCATGCAAAAATCATTTGAGGGCAA
Found at i:2084481 original size:25 final size:23
Alignment explanation
Indices: 2084436--2084481 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
2084426 TATAGAGATA
* *
2084436 ATGAATAACATTTGTTTATTTCT
1 ATGAATAACATTTGATCATTTCT
2084459 ATGAATAATCAATTTGATCATTT
1 ATGAATAA-C-ATTTGATCATTT
2084482 TAGTAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 1 0.05
25 10 0.53
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (23 bp):
ATGAATAACATTTGATCATTTCT
Found at i:2096843 original size:13 final size:13
Alignment explanation
Indices: 2096825--2096849 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2096815 CATGTACGAC
2096825 ACACGGCTATGTT
1 ACACGGCTATGTT
2096838 ACACGGCTATGT
1 ACACGGCTATGT
2096850 GTCCTCTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (13 bp):
ACACGGCTATGTT
Found at i:2099046 original size:40 final size:42
Alignment explanation
Indices: 2098979--2099075 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 42
2098969 CAACTATGCT
* *
2098979 TGGCACTAAGTGTACG-GTTTAATATAGCT-TCGGCTACA-AA
1 TGGCACTAAGTGTGCGAGTTGAATATAGCTCT-GGCTACATAA
* *
2099019 TGGCACTAAGTGTGCGAGTTGGA-ATAGCTCTGGCTATATAA
1 TGGCACTAAGTGTGCGAGTTGAATATAGCTCTGGCTACATAA
2099060 -GGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
2099076 TACTGACTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
40 43 0.86
41 7 0.14
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (42 bp):
TGGCACTAAGTGTGCGAGTTGAATATAGCTCTGGCTACATAA
Found at i:2108543 original size:27 final size:27
Alignment explanation
Indices: 2108495--2108599 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
2108485 GCGAGGCTGC
* *
2108495 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
2108522 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
2108548 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
2108575 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
2108600 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 8 0.11
27 60 0.85
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:2110237 original size:26 final size:26
Alignment explanation
Indices: 2110208--2110302 Score: 163
Period size: 26 Copynumber: 3.7 Consensus size: 26
2110198 ATGAAACGTC
*
2110208 TACCTAACACATTATCATGGAACATT
1 TACCTAACCCATTATCATGGAACATT
*
2110234 TACCTAACCCATTATCATGAAACATT
1 TACCTAACCCATTATCATGGAACATT
2110260 TACCTAACCCATTATCATGGAACATT
1 TACCTAACCCATTATCATGGAACATT
*
2110286 TACCTAACCTATTATCA
1 TACCTAACCCATTATCA
2110303 ATTTGTATCA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 65 1.00
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (26 bp):
TACCTAACCCATTATCATGGAACATT
Found at i:2110267 original size:52 final size:52
Alignment explanation
Indices: 2110195--2110302 Score: 180
Period size: 52 Copynumber: 2.1 Consensus size: 52
2110185 TGAAATTCCC
*
2110195 ATCATGAAACGTCTACCTAACACATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATCTACCTAACACATTATCATGGAACATTTACCTAACCCATT
* * *
2110247 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATT
1 ATCATGAAACATCTACCTAACACATTATCATGGAACATTTACCTAACCCATT
2110299 ATCA
1 ATCA
2110303 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (52 bp):
ATCATGAAACATCTACCTAACACATTATCATGGAACATTTACCTAACCCATT
Found at i:2114156 original size:43 final size:44
Alignment explanation
Indices: 2114101--2114187 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 44
2114091 ATATTGTACA
*
2114101 ATGCCAACGTCCCACAC-GTGGTCTTACATGTA-ATCACATATCG
1 ATGCCAACGTCCCACACAG-GGTCTTACATGCACATCACATATCG
* *
2114144 ATGCC-ACTGTCCCAGACAGGGTCTTACTTGCACATCACATATCG
1 ATGCCAAC-GTCCCACACAGGGTCTTACATGCACATCACATATCG
2114188 GAATCCTATG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
42 2 0.05
43 24 0.63
44 12 0.32
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCACACAGGGTCTTACATGCACATCACATATCG
Found at i:2122400 original size:23 final size:23
Alignment explanation
Indices: 2122347--2122402 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
2122337 CTAGATTTCA
* *
2122347 CCACAAGGGCGTTACAGAATACG
1 CCACAAAGGCATTACAGAATACG
* *
2122370 CCATAAAGGCATTACAGAATATG
1 CCACAAAGGCATTACAGAATACG
*
2122393 CTACAAAGGC
1 CCACAAAGGC
2122403 TTTTTCACAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.16
Consensus pattern (23 bp):
CCACAAAGGCATTACAGAATACG
Found at i:2123845 original size:46 final size:46
Alignment explanation
Indices: 2123772--2123862 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
2123762 AGAGTTATTA
* * *
2123772 GCTTTACAGAATATGCCACAAAAGCATCATAGAATACACTACAAAT
1 GCTTCACAGAATATACCACAAAAGCATCATAGAATACACCACAAAT
* *
2123818 GCTTCACAGAATATACCATAAAGGCATCATAGAATACACCACAAA
1 GCTTCACAGAATATACCACAAAAGCATCATAGAATACACCACAAA
2123863 GGTTTTCCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.46, C:0.23, G:0.11, T:0.20
Consensus pattern (46 bp):
GCTTCACAGAATATACCACAAAAGCATCATAGAATACACCACAAAT
Found at i:2123863 original size:23 final size:23
Alignment explanation
Indices: 2123787--2123864 Score: 93
Period size: 23 Copynumber: 3.4 Consensus size: 23
2123777 ACAGAATATG
*
2123787 CCACAAAAGCATCATAGAATACA
1 CCACAAAGGCATCATAGAATACA
* * * * *
2123810 CTACAAATGCTTCACAGAATATA
1 CCACAAAGGCATCATAGAATACA
*
2123833 CCATAAAGGCATCATAGAATACA
1 CCACAAAGGCATCATAGAATACA
2123856 CCACAAAGG
1 CCACAAAGG
2123865 TTTTCCAAAG
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.47, C:0.24, G:0.12, T:0.17
Consensus pattern (23 bp):
CCACAAAGGCATCATAGAATACA
Found at i:2126606 original size:19 final size:19
Alignment explanation
Indices: 2126582--2126627 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
2126572 ACAAACATAA
2126582 TAATTTATCAAT-ATATTTC
1 TAATTTATCAATCA-ATTTC
2126601 TAATTTCA-CAATCAATTTC
1 TAATTT-ATCAATCAATTTC
2126620 TAATTTAT
1 TAATTTAT
2126628 AAAACTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 1 0.04
19 21 0.88
20 2 0.08
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATTTATCAATCAATTTC
Found at i:2128478 original size:14 final size:15
Alignment explanation
Indices: 2128454--2128482 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2128444 AGTAGGCATT
2128454 GTATAAAAAATATTA
1 GTATAAAAAATATTA
2128469 GTAT-AAAAATATTA
1 GTATAAAAAATATTA
2128483 AATGAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (15 bp):
GTATAAAAAATATTA
Found at i:2128581 original size:173 final size:169
Alignment explanation
Indices: 2128342--2128684 Score: 537
Period size: 173 Copynumber: 2.0 Consensus size: 169
2128332 TTTAACTGGC
* * *
2128342 ACCATTTTTATTGTAGTAACTAAGAGGGCGGAGACGTGAATTTGTGTGTATTTAAATGCGTTTTT
1 ACCATTTTTATTATAGTAACTAAGAGGGCGGAGACGTGAATTTGTGTATATTTAAATGCATTTTT
*
2128407 CTTCTAATTTAAAGGTTAGGAGGAATTAAAAACTAAAAGTAGGCATTGTAT-AAAAAATATTAGT
66 CTTCGAATTTAAAGGTTAGGAGGAATTAAAAACT-AAA--A-GCA--GTATAAAAAAATATTAGT
*
2128471 ATAAAAATATTAAATGAATAATGTTTTAAAAGGAAGAGGAAATTA
125 ATAAAAATATTAAATGAATAATGCTTTAAAAGGAAGAGGAAATTA
* *
2128516 ACCA-TTTTATTATAGTAACTAAGAGGGCGGAGACGTGAATTTGTGTATATTTAAGTGTATTTTT
1 ACCATTTTTATTATAGTAACTAAGAGGGCGGAGACGTGAATTTGTGTATATTTAAATGCATTTTT
2128580 CTTCGAATTTAAAGGTTAGGAGGAATTAAAAACTAAAAGCAGTATAAAAAAATATTAGTATAAAA
66 CTTCGAATTTAAAGGTTAGGAGGAATTAAAAACTAAAAGCAGTATAAAAAAATATTAGTATAAAA
* *
2128645 ATATTCAATGAATTATGCTTTAAAAGGAAGAGGAAATTA
131 ATATTAAATGAATAATGCTTTAAAAGGAAGAGGAAATTA
2128684 A
1 A
2128685 TTTAAAAAAT
Statistics
Matches: 159, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
167 4 0.03
168 56 0.35
169 3 0.02
170 1 0.01
172 3 0.02
173 88 0.55
174 4 0.03
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.33
Consensus pattern (169 bp):
ACCATTTTTATTATAGTAACTAAGAGGGCGGAGACGTGAATTTGTGTATATTTAAATGCATTTTT
CTTCGAATTTAAAGGTTAGGAGGAATTAAAAACTAAAAGCAGTATAAAAAAATATTAGTATAAAA
ATATTAAATGAATAATGCTTTAAAAGGAAGAGGAAATTA
Found at i:2132510 original size:20 final size:20
Alignment explanation
Indices: 2132473--2132511 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2132463 ATTATTTCAT
* *
2132473 CTTGAATCCCGAACCTTGAA
1 CTTGAACCCCAAACCTTGAA
*
2132493 CTTGAACCCCAAATCTTGA
1 CTTGAACCCCAAACCTTGA
2132512 GGTTTAGTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.26
Consensus pattern (20 bp):
CTTGAACCCCAAACCTTGAA
Found at i:2135171 original size:27 final size:26
Alignment explanation
Indices: 2135140--2135193 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
2135130 AATGTAAAAC
2135140 TATTTAAATTAAATATTCAAAATTAAT
1 TATTTAAATT-AATATTCAAAATTAAT
*** *
2135167 TATTTTGCTTAATGTTCAAAATTAAT
1 TATTTAAATTAATATTCAAAATTAAT
2135193 T
1 T
2135194 TAATCAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.48
Consensus pattern (26 bp):
TATTTAAATTAATATTCAAAATTAAT
Found at i:2136241 original size:63 final size:63
Alignment explanation
Indices: 2136167--2136292 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
2136157 AGTTGTGAAA
*
2136167 AAATAATGCTAAATGAGATTAATTAGTGCATTATTAGTAATTTTCTCCTACGAATTGTTCTTT
1 AAATAATGCTAAATGAGATTAATTAGTACATTATTAGTAATTTTCTCCTACGAATTGTTCTTT
2136230 AAATAATGCTAAATGAGATTAATTAGTACATTATTAGTAATTTTCTCCTACGAATTGTTCTTT
1 AAATAATGCTAAATGAGATTAATTAGTACATTATTAGTAATTTTCTCCTACGAATTGTTCTTT
2136293 CCCCATGATG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (63 bp):
AAATAATGCTAAATGAGATTAATTAGTACATTATTAGTAATTTTCTCCTACGAATTGTTCTTT
Found at i:2139719 original size:14 final size:14
Alignment explanation
Indices: 2139685--2139719 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
2139675 ATTAACTCCC
* *
2139685 TATATACATATACA
1 TATATATATATAAA
2139699 TATATATATATAAA
1 TATATATATATAAA
2139713 TATATAT
1 TATATAT
2139720 CAATCTGCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATATATATAAA
Found at i:2143047 original size:17 final size:17
Alignment explanation
Indices: 2143026--2143070 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
2143016 TCGTCATAGG
2143026 TTTGGTGAGCTCGCA-A
1 TTTGGTGAGCTCGCAGA
2143042 TCTTGGTGAGCTCGCAGA
1 T-TTGGTGAGCTCGCAGA
*
2143060 TATGGTGAGCT
1 TTTGGTGAGCT
2143071 TGTAGTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 1 0.04
17 23 0.88
18 2 0.08
ACGTcount: A:0.18, C:0.18, G:0.33, T:0.31
Consensus pattern (17 bp):
TTTGGTGAGCTCGCAGA
Found at i:2160973 original size:22 final size:22
Alignment explanation
Indices: 2160943--2160994 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
2160933 TATTACGTAC
*
2160943 CAGCTTTGAAAAGCAACATCAT
1 CAGCCTTGAAAAGCAACATCAT
2160965 CAGCCTTGAAAAGCAACATCAT
1 CAGCCTTGAAAAGCAACATCAT
2160987 CAGCCTTG
1 CAGCCTTG
2160995 GATAGCTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (22 bp):
CAGCCTTGAAAAGCAACATCAT
Found at i:2166504 original size:33 final size:33
Alignment explanation
Indices: 2166406--2166508 Score: 92
Period size: 33 Copynumber: 3.2 Consensus size: 33
2166396 TTTCAGGCTC
* *
2166406 AGTAGTTAATCTTCTTCACCATTATTAAGGTTT
1 AGTAGTTAGTCTTCTTCACCATTATTAGGGTTT
* * *
2166439 AGTTA-TTAGT-TTTTTCTA--GTT-TT-GGTTGTT
1 AG-TAGTTAGTCTTCTTC-ACCATTATTAGGGT-TT
2166469 AGTAGTTAGTCTTCTTCACCATTATTAGGGTTT
1 AGTAGTTAGTCTTCTTCACCATTATTAGGGTTT
2166502 AGTAGTT
1 AGTAGTT
2166509 GGTATTTTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 18
0.67 0.10 0.23
Matches are distributed among these distances:
29 4 0.08
30 12 0.23
31 7 0.13
32 7 0.13
33 18 0.34
34 5 0.09
ACGTcount: A:0.21, C:0.11, G:0.17, T:0.50
Consensus pattern (33 bp):
AGTAGTTAGTCTTCTTCACCATTATTAGGGTTT
Found at i:2167240 original size:27 final size:27
Alignment explanation
Indices: 2167210--2167261 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
2167200 GGTTTGATCA
*
2167210 TTGGAATACTCGGGTATTCCATTGTCT
1 TTGGAATACTAGGGTATTCCATTGTCT
* *
2167237 TTGGAATACTAGGGTGTTTCATTGT
1 TTGGAATACTAGGGTATTCCATTGT
2167262 AACACCATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.19, C:0.13, G:0.25, T:0.42
Consensus pattern (27 bp):
TTGGAATACTAGGGTATTCCATTGTCT
Found at i:2168298 original size:24 final size:24
Alignment explanation
Indices: 2168271--2168320 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
2168261 TATGTTCTAA
* *
2168271 TTTTCTCTGTTTTCTCTTCTTTTCT
1 TTTTCTC-ATTTTCTCTTATTTTCT
2168296 TTTTCTCATTTTCTCTTATTTTCT
1 TTTTCTCATTTTCTCTTATTTTCT
2168320 T
1 T
2168321 CCTTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.04, C:0.22, G:0.02, T:0.72
Consensus pattern (24 bp):
TTTTCTCATTTTCTCTTATTTTCT
Found at i:2169111 original size:27 final size:26
Alignment explanation
Indices: 2169053--2169111 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 26
2169043 AAATAAAAAC
2169053 ATTTAAAATAATTATTTTATTTTATA
1 ATTTAAAATAATTATTTTATTTTATA
*
2169079 A-ATAAAACTAATTTATTTT-TATTTA-A
1 ATTTAAAA-TAA-TTATTTTAT-TTTATA
2169105 ATTTAAA
1 ATTTAAA
2169112 TTTAAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
25 5 0.19
26 7 0.26
27 15 0.56
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
ATTTAAAATAATTATTTTATTTTATA
Found at i:2170370 original size:17 final size:19
Alignment explanation
Indices: 2170348--2170384 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
2170338 CCAATTCAAA
2170348 ATCAATTT-CA-TATTTTT
1 ATCAATTTACAGTATTTTT
2170365 ATCAATTTACAGTATTTTT
1 ATCAATTTACAGTATTTTT
2170384 A
1 A
2170385 ATTTTATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 2 0.11
19 8 0.44
ACGTcount: A:0.32, C:0.11, G:0.03, T:0.54
Consensus pattern (19 bp):
ATCAATTTACAGTATTTTT
Found at i:2172023 original size:13 final size:13
Alignment explanation
Indices: 2172005--2172031 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2171995 TTTGTGAAAA
2172005 TAATATTTTACAT
1 TAATATTTTACAT
2172018 TAATATTTTACAT
1 TAATATTTTACAT
2172031 T
1 T
2172032 GTTATAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATATTTTACAT
Found at i:2172988 original size:20 final size:21
Alignment explanation
Indices: 2172965--2173007 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
2172955 TAGTTTAATT
2172965 AAAATAA-ATACAAAAA-TAAA
1 AAAATAATATA-AAAAATTAAA
2172985 AAAATAATATAAAAAATTAAA
1 AAAATAATATAAAAAATTAAA
2173006 AA
1 AA
2173008 TCAAACCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (21 bp):
AAAATAATATAAAAAATTAAA
Found at i:2173006 original size:19 final size:19
Alignment explanation
Indices: 2172961--2173008 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
2172951 TAGTTAGTTT
2172961 AATT-AAAATAAATACAAA
1 AATTAAAAATAAATACAAA
*
2172979 AATAAAAAAATAATATA-AAA
1 AAT-TAAAAATAA-ATACAAA
2172999 AATTAAAAAT
1 AATTAAAAAT
2173009 CAAACCCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 3 0.12
19 6 0.24
20 13 0.52
21 3 0.12
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (19 bp):
AATTAAAAATAAATACAAA
Found at i:2177633 original size:16 final size:15
Alignment explanation
Indices: 2177612--2177655 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
2177602 TAGTATCGTG
2177612 TTGAAAATATTTTTT
1 TTGAAAATATTTTTT
*
2177627 ATTGAAAATA-TGTTT
1 -TTGAAAATATTTTTT
*
2177642 TGGAAAATATTTTT
1 TTGAAAATATTTTT
2177656 ATTTTTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 8 0.33
15 7 0.29
16 9 0.38
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.52
Consensus pattern (15 bp):
TTGAAAATATTTTTT
Found at i:2181355 original size:15 final size:15
Alignment explanation
Indices: 2181335--2181364 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2181325 AAACCCTATT
*
2181335 TTTCCTTTCTTTTTC
1 TTTCCTTTCTATTTC
2181350 TTTCCTTTCTATTTC
1 TTTCCTTTCTATTTC
2181365 GTTTTCATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.27, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTCCTTTCTATTTC
Found at i:2181404 original size:12 final size:13
Alignment explanation
Indices: 2181382--2181423 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
2181372 TTCTCTGTTC
*
2181382 TTTCTTTTATTTA
1 TTTCATTTATTTA
2181395 TTT-ATTTATTTA
1 TTTCATTTATTTA
*
2181407 TTTCTTTTACTTTA
1 TTTCATTTA-TTTA
2181421 TTT
1 TTT
2181424 TAATTTTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 11 0.44
13 7 0.28
14 7 0.28
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTCATTTATTTA
Found at i:2181432 original size:16 final size:16
Alignment explanation
Indices: 2181411--2181441 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
2181401 TATTTATTTC
2181411 TTTTACTTTATTTTAA
1 TTTTACTTTATTTTAA
2181427 TTTTACTTTATTTTA
1 TTTTACTTTATTTTA
2181442 TGCTTTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTACTTTATTTTAA
Found at i:2181467 original size:16 final size:15
Alignment explanation
Indices: 2181446--2181492 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
2181436 ATTTTATGCT
2181446 TTATTATATTATTAAA
1 TTATTATA-TATTAAA
* *
2181462 TTATTATAATAATATA
1 TTATTAT-ATATTAAA
2181478 TTA-TATATATTAAA
1 TTATTATATATTAAA
2181492 T
1 T
2181493 ATCTTATACT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 7 0.27
15 3 0.12
16 15 0.58
17 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTATTATATATTAAA
Found at i:2191854 original size:16 final size:16
Alignment explanation
Indices: 2191833--2191891 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
2191823 GGTTGGGGGG
2191833 AATGGAATAGAATTGT
1 AATGGAATAGAATTGT
***
2191849 AATGGAATAGGGCTGT
1 AATGGAATAGAATTGT
*
2191865 AATTGAATAGAATTGT
1 AATGGAATAGAATTGT
*
2191881 AATAGAATAGA
1 AATGGAATAGA
2191892 GCTGCAATAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.44, C:0.02, G:0.25, T:0.29
Consensus pattern (16 bp):
AATGGAATAGAATTGT
Found at i:2191900 original size:16 final size:16
Alignment explanation
Indices: 2191846--2191900 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
2191836 GGAATAGAAT
* *
2191846 TGTAATGGAATAGGGC
1 TGTAATAGAATAGAGC
* **
2191862 TGTAATTGAATAGAAT
1 TGTAATAGAATAGAGC
2191878 TGTAATAGAATAGAGC
1 TGTAATAGAATAGAGC
*
2191894 TGCAATA
1 TGTAATA
2191901 ATAATTCAAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.29
Consensus pattern (16 bp):
TGTAATAGAATAGAGC
Found at i:2196077 original size:24 final size:24
Alignment explanation
Indices: 2196050--2196095 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
2196040 TGGCTGGTGG
*
2196050 TTCTGGTGGTGCCCAAGGTGGTTC
1 TTCTGGAGGTGCCCAAGGTGGTTC
*
2196074 TTCTGGAGGTGCTCAAGGTGGT
1 TTCTGGAGGTGCCCAAGGTGGT
2196096 GACCAGGCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.11, C:0.17, G:0.39, T:0.33
Consensus pattern (24 bp):
TTCTGGAGGTGCCCAAGGTGGTTC
Found at i:2199585 original size:37 final size:37
Alignment explanation
Indices: 2199534--2199610 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
2199524 ATTATAAATA
*
2199534 TATAAAAAATTTGAACTCATTGATTTTAATATTAAAC
1 TATAAAAAAATTGAACTCATTGATTTTAATATTAAAC
2199571 TATAAAAAAATTGAACTCATTGATTTTAATATTAAAC
1 TATAAAAAAATTGAACTCATTGATTTTAATATTAAAC
2199608 TAT
1 TAT
2199611 TTAATATCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (37 bp):
TATAAAAAAATTGAACTCATTGATTTTAATATTAAAC
Found at i:2200089 original size:17 final size:19
Alignment explanation
Indices: 2200067--2200111 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
2200057 CTAAAATAGT
2200067 AACAAAATTA-ACAATAA-
1 AACAAAATTATACAATAAC
2200084 AACAAAAGTTATACAATAAC
1 AACAAAA-TTATACAATAAC
2200104 AACAAAAT
1 AACAAAAT
2200112 AGTAGCATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.28
18 3 0.12
19 8 0.32
20 7 0.28
ACGTcount: A:0.67, C:0.13, G:0.02, T:0.18
Consensus pattern (19 bp):
AACAAAATTATACAATAAC
Found at i:2204263 original size:13 final size:13
Alignment explanation
Indices: 2204245--2204278 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
2204235 CCCAGGGGAC
2204245 ACATGACCGTGCA
1 ACATGACCGTGCA
2204258 ACATGACCGTGCA
1 ACATGACCGTGCA
2204271 ACATGACC
1 ACATGACC
2204279 ATGTGTCGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.32, C:0.32, G:0.21, T:0.15
Consensus pattern (13 bp):
ACATGACCGTGCA
Found at i:2204505 original size:10 final size:10
Alignment explanation
Indices: 2204486--2204532 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
2204476 TTCTCAACTC
2204486 ATCA-ACCAA
1 ATCATACCAA
2204495 ATCATACCAA
1 ATCATACCAA
*
2204505 ATCTAAACCAAA
1 ATC-ATACC-AA
2204517 ATCATACCAA
1 ATCATACCAA
*
2204527 AACATA
1 ATCATA
2204533 TGTTCCATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 15 0.47
11 8 0.25
12 5 0.16
ACGTcount: A:0.55, C:0.28, G:0.00, T:0.17
Consensus pattern (10 bp):
ATCATACCAA
Found at i:2205298 original size:44 final size:40
Alignment explanation
Indices: 2205250--2205345 Score: 113
Period size: 41 Copynumber: 2.3 Consensus size: 40
2205240 TAGAATATCA
2205250 CACACTTAGTGCCATCATATTAAACCGAAACTA-TCTCAATACTG
1 CACACTTAGTGCCA-CATA-T-AACCGAAACTATTC-CAATAC-G
* * *
2205294 CACACTTAGTGCCACATATAGCCGAAGCTATTCCAATTCG
1 CACACTTAGTGCCACATATAACCGAAACTATTCCAATACG
2205334 CACACTTAGTGC
1 CACACTTAGTGC
2205346 TATTTATAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
40 13 0.27
41 14 0.29
42 3 0.06
43 4 0.08
44 14 0.29
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.26
Consensus pattern (40 bp):
CACACTTAGTGCCACATATAACCGAAACTATTCCAATACG
Found at i:2205354 original size:40 final size:40
Alignment explanation
Indices: 2205228--2205386 Score: 126
Period size: 40 Copynumber: 3.9 Consensus size: 40
2205218 GCCAATAATC
** *
2205228 TAGCCGAAGCTA-TAGAATATCACACACTTAGTGCCATCATA
1 TAGCCGAAGCTATTCCAA-ATCGCACACTTAGTGCCA-CATA
* *
2205269 TTAAACCGAAACTA-TCTC-AATACTGCACACTTAGTGCCACATA
1 -T-AGCCGAAGCTATTC-CAAAT-C-GCACACTTAGTGCCACATA
* * **
2205312 TAGCCGAAGCTATTCCAATTCGCACACTTAGTGCTATTTA
1 TAGCCGAAGCTATTCCAAATCGCACACTTAGTGCCACATA
* * *
2205352 TAGCCGAAGTTATTTCAAATCGCACACCTAGTGCC
1 TAGCCGAAGCTATTCCAAATCGCACACTTAGTGCC
2205387 GAACATAATC
Statistics
Matches: 95, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
40 46 0.48
41 11 0.12
42 8 0.08
43 16 0.17
44 14 0.15
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (40 bp):
TAGCCGAAGCTATTCCAAATCGCACACTTAGTGCCACATA
Found at i:2205680 original size:21 final size:22
Alignment explanation
Indices: 2205656--2205696 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
2205646 ATATTTAGGG
2205656 CATTTTACAA-ATTAGTCCCCA
1 CATTTTACAACATTAGTCCCCA
* *
2205677 CATTTTTCAACTTTAGTCCC
1 CATTTTACAACATTAGTCCC
2205697 TATTTCATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.27, C:0.29, G:0.05, T:0.39
Consensus pattern (22 bp):
CATTTTACAACATTAGTCCCCA
Found at i:2205814 original size:106 final size:107
Alignment explanation
Indices: 2205686--2205896 Score: 406
Period size: 107 Copynumber: 2.0 Consensus size: 107
2205676 ACATTTTTCA
2205686 ACTTTAGTCCCTATTTCATAAAATCA-CAAAATACACAAAATTCATCAAAACCATGCCTTAGCCG
1 ACTTTAGTCCCTATTTCATAAAATCATCAAAATACACAAAATTCATCAAAACCATGCCTTAGCCG
2205750 AACCTTCCTATGGTCTCTAGCAACCCATAACTTTTATTTAAC
66 AACCTTCCTATGGTCTCTAGCAACCCATAACTTTTATTTAAC
2205792 ACTTTAGTCCCTATTTCATAAAATCATCAAAATACACAAAATTCATCAAAACCATGCCTTAGCCG
1 ACTTTAGTCCCTATTTCATAAAATCATCAAAATACACAAAATTCATCAAAACCATGCCTTAGCCG
*
2205857 AACCTTCCTATGGTCTCTAGCAATCCATAACTTTTATTTA
66 AACCTTCCTATGGTCTCTAGCAACCCATAACTTTTATTTA
2205897 TTTTACATTT
Statistics
Matches: 103, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
106 26 0.25
107 77 0.75
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.31
Consensus pattern (107 bp):
ACTTTAGTCCCTATTTCATAAAATCATCAAAATACACAAAATTCATCAAAACCATGCCTTAGCCG
AACCTTCCTATGGTCTCTAGCAACCCATAACTTTTATTTAAC
Found at i:2206670 original size:16 final size:15
Alignment explanation
Indices: 2206636--2206671 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
2206626 ACAACTAAAG
*
2206636 AAAAATGAATATTGT
1 AAAAATGAATATCGT
*
2206651 AAAAATGAATGTCGT
1 AAAAATGAATATCGT
2206666 AAAAAT
1 AAAAAT
2206672 CTTGATTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.56, C:0.03, G:0.14, T:0.28
Consensus pattern (15 bp):
AAAAATGAATATCGT
Found at i:2207935 original size:25 final size:23
Alignment explanation
Indices: 2207889--2207932 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
2207879 ATTTTTTATA
*
2207889 TTAAAAGAATTATATTATAAATC
1 TTAAAAAAATTATATTATAAATC
2207912 TTAAAAAAATTATATTATAAA
1 TTAAAAAAATTATATTATAAA
2207933 AATAATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
TTAAAAAAATTATATTATAAATC
Found at i:2209202 original size:127 final size:128
Alignment explanation
Indices: 2208928--2209252 Score: 313
Period size: 127 Copynumber: 2.6 Consensus size: 128
2208918 ATCAAACGAG
** * * * * * * *
2208928 AAAAATCGAAACCCAGTACGTTAGGGCACGATCTCTCGAATTTCCAAATA-CAAAATATTGCCTT
1 AAAAATCGAAACCCAACACATTAGGGCACAATCCCTCGAATTCCCAAACATC-AAACATCGCCTT
* * * ** **
2208992 GTTTTTTAAAG---A-AAAATGTGGACGAAATTTTAAAGGGATGTTTGATTATTTGGATAAACAA
65 -TGTTTTAAAGTTTAGAAAATGCGGACGAAATTTCAAAGGGAAATTTGATTATTTAAATAAAC--
2209053 AA
127 AA
* * * * *
2209055 AAAAATCGAAGCCCAACACATTAGGGCACAATTTCC-CGAATTCCCAAACATCAAGCGTCGCTTT
1 AAAAATCGAAACCCAACACATTAGGGCACAA-TCCCTCGAATTCCCAAACATCAAACATCGCCTT
* *
2209119 TGTTTTAAAGTTTAGAAAATGCGGACGAGATTTCAAAGGGAAATTTGATTATTTAAATAAAC-G
65 TGTTTTAAAGTTTAGAAAATGCGGACGAAATTTCAAAGGGAAATTTGATTATTTAAATAAACAA
* * * *
2209182 AAAGATCGAAACCCAACACATTAGGGCACGATCCCTCGAATTTCTAAACATCAAACATCGCCTTT
1 AAAAATCGAAACCCAACACATTAGGGCACAATCCCTCGAATTCCCAAACATCAAACATCGCCTTT
2209247 GTTTTA
66 GTTTTA
2209253 TTTAAAATTA
Statistics
Matches: 159, Mismatches: 32, Indels: 14
0.78 0.16 0.07
Matches are distributed among these distances:
126 12 0.08
127 103 0.65
128 3 0.02
129 1 0.01
130 40 0.25
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (128 bp):
AAAAATCGAAACCCAACACATTAGGGCACAATCCCTCGAATTCCCAAACATCAAACATCGCCTTT
GTTTTAAAGTTTAGAAAATGCGGACGAAATTTCAAAGGGAAATTTGATTATTTAAATAAACAA
Found at i:2209726 original size:17 final size:18
Alignment explanation
Indices: 2209700--2209742 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
2209690 CGAATAAATA
*
2209700 AATAATAATAA-AATGAT
1 AATAAAAATAATAATGAT
*
2209717 AATAAAAATAATGATGAT
1 AATAAAAATAATAATGAT
*
2209735 AACAAAAA
1 AATAAAAA
2209743 CCTAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (18 bp):
AATAAAAATAATAATGAT
Found at i:2210042 original size:3 final size:3
Alignment explanation
Indices: 2210030--2210097 Score: 52
Period size: 3 Copynumber: 23.0 Consensus size: 3
2210020 TTAAATTGGT
* * * *
2210030 TAA T-A TAA TAA TAA TAA TAA TAA TAC CACA TAA GTAA AAA GAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA -TAA TAA TAA TAA
*
2210075 T-A TAA TAA CAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
2210098 GTTTAAAAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
2 6 0.12
3 42 0.81
4 4 0.08
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:2212038 original size:26 final size:26
Alignment explanation
Indices: 2212009--2212090 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
2211999 TGATACAAAT
2212009 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
2212035 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
2212061 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
2212087 TGAT
1 TGAT
2212091 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:2216866 original size:17 final size:17
Alignment explanation
Indices: 2216844--2216890 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
2216834 TATAGCACCT
2216844 AAAATATAATA-ATAATG
1 AAAATATAATAGATAA-G
2216861 AAAATATAAATAGATAAG
1 AAAATAT-AATAGATAAG
2216879 -AAATATAATAGA
1 AAAATATAATAGA
2216891 GGAGTAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.21
17 13 0.46
18 5 0.18
19 4 0.14
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAATATAATAGATAAG
Found at i:2216984 original size:3 final size:3
Alignment explanation
Indices: 2216963--2217312 Score: 161
Period size: 3 Copynumber: 115.3 Consensus size: 3
2216953 TAATTACAAA
* * * * * *
2216963 AAT AAT GAT GAT AAC AAT AAT AAT AAT AGT AAT AAT AAC AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** ** * *
2217011 AAT AAAT ATT AGC GGT AAA AAT AAT AA- AAT AAT AAT GAT AAT AAT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
2217056 AAT ATAT AA- AAT AAT ACT AAG AAT AGT AAA AAA AGAT AAT GAG AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * * * * *
2217102 AAC CAT AAT AAT AAT GAT AAT AAAT AAT AGT AGT AAAT AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT -AAT AAT AAT AAT
** * * * * * *
2217149 AAT AAT GGT AAT AAT GAG AAG ATT AAT AAT AGA- AAT GAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* * ** ** * *
2217194 AGAA AAT AA- AAA AAT ATAT AAT AAT AGC AAT AGC AAT AAA AAT AAA
1 A-AT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
2217240 AAT AAT AAT CAT AAT AAT AAT AAA AAT AGT AAT AA- AGAT CAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
2217285 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
2217313 TCAATAAATA
Statistics
Matches: 251, Mismatches: 82, Indels: 28
0.70 0.23 0.08
Matches are distributed among these distances:
2 8 0.03
3 224 0.89
4 19 0.08
ACGTcount: A:0.61, C:0.03, G:0.09, T:0.27
Consensus pattern (3 bp):
AAT
Done.