Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 70 of 311
Found at i:21639655 original size:21 final size:20
Alignment explanation
Indices: 21639622--21639663 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
21639612 ACATCTTTAA
21639622 TAATATAGAAATAAAACAAAT
1 TAATATAGAAATAAAA-AAAT
21639643 TAATCATAG-AATAAAAAAAT
1 TAAT-ATAGAAATAAAAAAAT
21639663 T
1 T
21639664 TCAATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 11 0.55
22 4 0.20
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (20 bp):
TAATATAGAAATAAAAAAAT
Found at i:21655624 original size:12 final size:12
Alignment explanation
Indices: 21655607--21655638 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
21655597 CTAATATGGG
21655607 AAGCCTTTGGTC
1 AAGCCTTTGGTC
*
21655619 AAGCCTTGGGTC
1 AAGCCTTTGGTC
21655631 AAGCCTTT
1 AAGCCTTT
21655639 TTGGTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.31
Consensus pattern (12 bp):
AAGCCTTTGGTC
Found at i:21656336 original size:15 final size:15
Alignment explanation
Indices: 21656312--21656343 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
21656302 TTCATTCACA
21656312 AAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAG
*
21656327 AAAAAGAAAAAAAAG
1 AAAAAAAAAAAAAAG
21656342 AA
1 AA
21656344 GGTTATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:21658163 original size:20 final size:19
Alignment explanation
Indices: 21658138--21658201 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 19
21658128 TCAATAAAAT
21658138 AATTCAAAATAATTTTTTAA
1 AATTCAAAAT-ATTTTTTAA
*
21658158 AATTCAAAATATTTATATAA
1 AATTCAAAATATTT-TTTAA
*
21658178 ATTTCAAAATTTATATTTTTAA
1 AATTCAAAA--TAT-TTTTTAA
21658200 AA
1 AA
21658202 AAGTTTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 4 0.11
20 22 0.61
22 8 0.22
23 2 0.06
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
AATTCAAAATATTTTTTAA
Found at i:21658179 original size:19 final size:20
Alignment explanation
Indices: 21658138--21658187 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
21658128 TCAATAAAAT
*
21658138 AATTCAAAATAATTTTTTAA
1 AATTCAAAATAATTTTATAA
21658158 AATTCAAAAT-ATTTATATAA
1 AATTCAAAATAATTT-TATAA
*
21658178 ATTTCAAAAT
1 AATTCAAAAT
21658188 TTATATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTCAAAATAATTTTATAA
Found at i:21667041 original size:10 final size:10
Alignment explanation
Indices: 21667012--21667070 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
21667002 TTTAAGTTAA
21667012 GTGTTT-AAT
1 GTGTTTAAAT
*
21667021 GTGTTT-TAT
1 GTGTTTAAAT
21667030 GTGTTTAAAT
1 GTGTTTAAAT
*
21667040 GTGATTAATAT
1 GTGTTTAA-AT
*
21667051 GTCTGTTTTAAT
1 G--TGTTTAAAT
21667063 GTGTTTAA
1 GTGTTTAA
21667071 TTGCATGTGT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
9 14 0.35
10 15 0.38
11 3 0.08
12 3 0.08
13 5 0.12
ACGTcount: A:0.24, C:0.02, G:0.20, T:0.54
Consensus pattern (10 bp):
GTGTTTAAAT
Found at i:21670190 original size:28 final size:29
Alignment explanation
Indices: 21670132--21670199 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 29
21670122 ATTGAAATTG
***
21670132 AAAGAAAAAGTACAAGAAAAAAGATTGAA
1 AAAGAAAAAGTACAAGAAAAAAGAAAAAA
* *
21670161 AAAGAGAAAG-ACAAGAAAAATGAAAAAA
1 AAAGAAAAAGTACAAGAAAAAAGAAAAAA
* *
21670189 AAGGGAAAAGT
1 AAAGAAAAAGT
21670200 GAGAGAAAGG
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
28 21 0.70
29 9 0.30
ACGTcount: A:0.69, C:0.03, G:0.21, T:0.07
Consensus pattern (29 bp):
AAAGAAAAAGTACAAGAAAAAAGAAAAAA
Found at i:21673781 original size:30 final size:30
Alignment explanation
Indices: 21673747--21673806 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
21673737 ATTTAATACG
21673747 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
21673777 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
21673807 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:21679184 original size:37 final size:37
Alignment explanation
Indices: 21679134--21679209 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
21679124 ATTTGGAGAA
21679134 AGGCTTCCCGATCCCTTTCTCCTCCTCCCTGACCAAC
1 AGGCTTCCCGATCCCTTTCTCCTCCTCCCTGACCAAC
21679171 AGGCTTCCCGATCCCTTTCTCCTCCTCCCTGACCAAC
1 AGGCTTCCCGATCCCTTTCTCCTCCTCCCTGACCAAC
21679208 AG
1 AG
21679210 TAGGAGGTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.14, C:0.47, G:0.12, T:0.26
Consensus pattern (37 bp):
AGGCTTCCCGATCCCTTTCTCCTCCTCCCTGACCAAC
Found at i:21681331 original size:30 final size:30
Alignment explanation
Indices: 21681297--21681356 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
21681287 ATTTAATACG
21681297 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
21681327 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
21681357 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:21690825 original size:13 final size:13
Alignment explanation
Indices: 21690804--21690834 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
21690794 GCTCGGCAGG
*
21690804 GACATGCCCGTGT
1 GACACGCCCGTGT
21690817 GACACGCCCGTGT
1 GACACGCCCGTGT
21690830 GACAC
1 GACAC
21690835 ACCCATGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.35, G:0.29, T:0.16
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:21701119 original size:3 final size:3
Alignment explanation
Indices: 21701111--21701140 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
21701101 GTGTTTTTTA
21701111 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
21701141 TTAAAGTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:21709888 original size:18 final size:17
Alignment explanation
Indices: 21709865--21709910 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
21709855 AAAATATGAA
21709865 GAAAAATAAATACAAAAT
1 GAAAAATAAATA-AAAAT
21709883 GAAAAATAAAAATAAAAAT
1 GAAAAAT--AAATAAAAAT
21709902 -AAAAATAAA
1 GAAAAATAAA
21709911 AATAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 3 0.12
18 13 0.50
19 5 0.19
20 5 0.19
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.15
Consensus pattern (17 bp):
GAAAAATAAATAAAAAT
Found at i:21709893 original size:6 final size:6
Alignment explanation
Indices: 21709872--21709922 Score: 84
Period size: 6 Copynumber: 8.2 Consensus size: 6
21709862 GAAGAAAAAT
21709872 AAATACA AAATGAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATA-A AAAT-AA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
21709922 A
1 A
21709923 GATAGATGGA
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
6 33 0.77
7 9 0.21
8 1 0.02
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:21711850 original size:79 final size:78
Alignment explanation
Indices: 21711749--21711973 Score: 249
Period size: 79 Copynumber: 2.8 Consensus size: 78
21711739 GCTACTCGTT
* *
21711749 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCTCACAAATGCCTTCGGGACTTAGCCCGG
21711814 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * * *
21711829 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCTCACAAATGCCTTCGGGA-CTTAGCCCGG
* *
21711893 ATTTAGTATCTTGCA
64 ATTTAGTAACTCGCA
* * * *
21711908 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACT-TAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAACTCT--CACAAATGCCTTCGGGACTTAGCCC
21711971 GGA
62 GGA
21711974 CATCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
78 4 0.03
79 64 0.52
80 44 0.36
81 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCTCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:21711933 original size:119 final size:120
Alignment explanation
Indices: 21711749--21711973 Score: 282
Period size: 119 Copynumber: 1.9 Consensus size: 120
21711739 GCTACTCGTT
21711749 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTCACAAATGCCTTCGGGACTTAACCCGG
* *
21711814 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * * **
21711868 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCT-TGCACAAATGCCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCT-CACAAATGCCTTCGGGA-CTTAAC
* *
21711929 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
62 CCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
21711974 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
118 7 0.08
119 63 0.69
120 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:21711973 original size:40 final size:39
Alignment explanation
Indices: 21711749--21711973 Score: 228
Period size: 40 Copynumber: 5.7 Consensus size: 39
21711739 GCTACTCGTT
* *
21711749 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCT-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACT-TGCA
* * *
21711789 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTGCA
*
21711829 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA-CTTGCA
* *
21711868 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTTGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTA-CTTGCA
* *
21711908 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTT-GCA
21711949 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
21711974 CATCATTCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 118 0.72
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTGCA
Found at i:21714850 original size:15 final size:15
Alignment explanation
Indices: 21714824--21714875 Score: 70
Period size: 15 Copynumber: 3.4 Consensus size: 15
21714814 AATCAATGAG
21714824 AATAAGAAAAAAGTAA-
1 AATAA-AAAAAA-TAAT
21714840 AATAAAAAAAATAAT
1 AATAAAAAAAATAAT
*
21714855 AATAGAAAAAATAAT
1 AATAAAAAAAATAAT
21714870 AATAAA
1 AATAAA
21714876 CAAATGAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
14 3 0.09
15 25 0.76
16 5 0.15
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (15 bp):
AATAAAAAAAATAAT
Found at i:21722115 original size:30 final size:30
Alignment explanation
Indices: 21722081--21722140 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
21722071 ACTTAACAAG
21722081 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
** *
21722111 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
21722141 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:21722801 original size:11 final size:11
Alignment explanation
Indices: 21722785--21722831 Score: 55
Period size: 10 Copynumber: 4.5 Consensus size: 11
21722775 ACAAATCGGG
21722785 GGAAAAAAGAA
1 GGAAAAAAGAA
*
21722796 GG-AAAAACAA
1 GGAAAAAAGAA
21722806 -GAAAAAA-AA
1 GGAAAAAAGAA
21722815 GGAAAAAAGAA
1 GGAAAAAAGAA
21722826 TGGAAA
1 -GGAAA
21722832 GGAAATTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
9 3 0.10
10 19 0.61
11 4 0.13
12 5 0.16
ACGTcount: A:0.72, C:0.02, G:0.23, T:0.02
Consensus pattern (11 bp):
GGAAAAAAGAA
Found at i:21729116 original size:21 final size:22
Alignment explanation
Indices: 21729083--21729124 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
21729073 ATAATGCCTG
*
21729083 ATTTAGTAAATGTTTATGTTAT
1 ATTTAGTAAATGTCTATGTTAT
*
21729105 ATTT-GTATATGTCTATGTTA
1 ATTTAGTAAATGTCTATGTTA
21729125 GTATCATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.29, C:0.02, G:0.14, T:0.55
Consensus pattern (22 bp):
ATTTAGTAAATGTCTATGTTAT
Found at i:21731695 original size:13 final size:13
Alignment explanation
Indices: 21731677--21731701 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21731667 AAGTTGAGTT
21731677 AATTTTATATTGG
1 AATTTTATATTGG
21731690 AATTTTATATTG
1 AATTTTATATTG
21731702 TAAAAAGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
AATTTTATATTGG
Found at i:21739353 original size:14 final size:14
Alignment explanation
Indices: 21739334--21739365 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
21739324 AAATGAACGA
21739334 GGTAAAACATAGTT
1 GGTAAAACATAGTT
21739348 GGTAAAACATAGTT
1 GGTAAAACATAGTT
21739362 GGTA
1 GGTA
21739366 TATTGATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.25, T:0.28
Consensus pattern (14 bp):
GGTAAAACATAGTT
Found at i:21748457 original size:38 final size:38
Alignment explanation
Indices: 21748412--21748515 Score: 138
Period size: 38 Copynumber: 2.7 Consensus size: 38
21748402 TTTAAACTTA
* *
21748412 GATATAATACCAGCACTAGGCCTGCGGGATTTTACCCG
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
* *
21748450 GATATAATACCAACACGAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
* *
21748488 GATAGAATTCCAGCA-TAAAGCCTGCGGG
1 GATATAATACCAGCACT-AAGCCTGCGGG
21748516 TCTTTAAGCC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (38 bp):
GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
Found at i:21755870 original size:14 final size:15
Alignment explanation
Indices: 21755851--21755881 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
21755841 AAAGATATTC
21755851 TTTTTCTAAAT-AAA
1 TTTTTCTAAATGAAA
21755865 TTTTTCTAAATGAAA
1 TTTTTCTAAATGAAA
21755880 TT
1 TT
21755882 AAGTCGAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (15 bp):
TTTTTCTAAATGAAA
Found at i:21757038 original size:11 final size:11
Alignment explanation
Indices: 21757022--21757047 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
21757012 CATCTATTTC
21757022 AAAAAAAATAA
1 AAAAAAAATAA
21757033 AAAAAAAATAA
1 AAAAAAAATAA
21757044 AAAA
1 AAAA
21757048 GATTATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:21758540 original size:13 final size:13
Alignment explanation
Indices: 21758522--21758565 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
21758512 TCTATTTAAA
21758522 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
*
21758535 AAAAGAAAAAGAG
1 AAAAGAAAAAAAG
21758548 AAAA-AAATAAAGAG
1 AAAAGAAA-AAA-AG
21758562 AAAA
1 AAAA
21758566 AATAAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
12 3 0.11
13 18 0.67
14 6 0.22
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:21758549 original size:21 final size:21
Alignment explanation
Indices: 21758520--21758574 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
21758510 CTTCTATTTA
21758520 AAAAAAGAAAAAAAGAAA-AG
1 AAAAAAGAAAAAAAGAAAGAG
*
21758540 AAAAAGAGAAAAAAATAAAGAG
1 AAAAA-AGAAAAAAAGAAAGAG
*
21758562 AAAAAATAAAAAA
1 AAAAAAGAAAAAA
21758575 TGGAGAGGCC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
20 5 0.16
21 19 0.61
22 7 0.23
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.04
Consensus pattern (21 bp):
AAAAAAGAAAAAAAGAAAGAG
Found at i:21758566 original size:13 final size:13
Alignment explanation
Indices: 21758533--21758571 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
21758523 AAAGAAAAAA
21758533 AGAAAAGAA-AAAG
1 AGAAAA-AATAAAG
21758546 AGAAAAAAATAAAG
1 AG-AAAAAATAAAG
21758560 AGAAAAAATAAA
1 AGAAAAAATAAA
21758572 AAATGGAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.05
Consensus pattern (13 bp):
AGAAAAAATAAAG
Found at i:21759511 original size:44 final size:44
Alignment explanation
Indices: 21759444--21759625 Score: 190
Period size: 44 Copynumber: 4.1 Consensus size: 44
21759434 CAAAGAAACA
* * * *
21759444 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGT
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * **
21759488 AGATCTGACATTCCTGTGCTTATAGCGAAGCAGATTGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
*
21759533 AG--CATGGCATCCCTGTGTTTATAGGGAACAAGTTC-AAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGC
* *
21759576 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
21759620 AGATCT
1 AGATCT
21759626 AACCTTCAGA
Statistics
Matches: 109, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
43 14 0.13
44 83 0.76
45 12 0.11
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (44 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:21759599 original size:88 final size:87
Alignment explanation
Indices: 21759449--21759616 Score: 221
Period size: 88 Copynumber: 1.9 Consensus size: 87
21759439 AAACAAGATT
* * *
21759449 TGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCTGTGCTTATAGC
1 TGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATCCCTATGCTTATAGC
*
21759514 GAAGCAGATTGAAGATTTCAGCA
66 GAA-CAGATCGAAGATTTCAGCA
* * * * *
21759537 TGGCATCCCTGTGTTTATAGGGAACAAGTTC-AAGATAGCAGATTTGGCATCCCTATGTTTATAG
1 TGGCATCCCTATGTTTATAGGGAAC-AGATCAAAGATAGCAGATCTGACATCCCTATGCTTATAG
*
21759601 GGAACAGATCGAAGAT
65 CGAACAGATCGAAGAT
21759617 AGCAGATCTA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
87 11 0.16
88 54 0.78
89 4 0.06
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (87 bp):
TGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATCCCTATGCTTATAGC
GAACAGATCGAAGATTTCAGCA
Found at i:21759823 original size:119 final size:119
Alignment explanation
Indices: 21759615--21760208 Score: 990
Period size: 119 Copynumber: 5.0 Consensus size: 119
21759605 CAGATCGAAG
21759615 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
21759680 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
21759734 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
21759799 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
21759853 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
21759918 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
** * * * *
21759972 ATAATAGATTTAACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGGTATTCTTATGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
21760037 TTACAAGAAACAAATCGAGGTCATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * * *
21760091 ATAGCAGATCTAAGCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGACATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * * *
21760156 TTACAAGGAACAAATCAAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
21760209 CATGACTCAA
Statistics
Matches: 447, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 447 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:21760240 original size:85 final size:83
Alignment explanation
Indices: 21760132--21760313 Score: 292
Period size: 85 Copynumber: 2.2 Consensus size: 83
21760122 GAAGCAGATC
21760132 CAAGATGGTTTGACATCCTTGTGCTTACAAGGAACAAATCAAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGACATCCTTGTGCTTACAAGGAACAAATCAAGGACATTGCAGATATGACTCTCA
21760197 AATGTTCTCAAACATGACT
66 AATGTTCTCAAACA-GACT
* * * * *
21760216 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GACATCCTTGTGCTTACAAGGAACAAATCAAGGACATTGCAGATATGACTCTC
21760281 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
*
21760300 CAAGATGATTTGAC
1 CAAGATGGTTTGAC
21760314 GTCTTTACAA
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
83 2 0.02
84 25 0.28
85 63 0.70
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGACATCCTTGTGCTTACAAGGAACAAATCAAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:21764754 original size:42 final size:42
Alignment explanation
Indices: 21764700--21764783 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
21764690 AACACATATA
*
21764700 AATCAAATATTAACATGTATAATACATAACATCAACTCACAT
1 AATCAAATATTAACATATATAATACATAACATCAACTCACAT
*
21764742 AATCACATATTAACATATATAATACATAACATCAACTCACAT
1 AATCAAATATTAACATATATAATACATAACATCAACTCACAT
21764784 TTTCATAACC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.50, C:0.20, G:0.01, T:0.29
Consensus pattern (42 bp):
AATCAAATATTAACATATATAATACATAACATCAACTCACAT
Found at i:21765655 original size:57 final size:58
Alignment explanation
Indices: 21765584--21765693 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 58
21765574 GTGCCCACTA
* *
21765584 ACCGATCTCGCACACATAGTGCTCGGTT-GAAGAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCACACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATT
* * * *
21765641 ACCGATTTCACACACATAGTGCTCGGTTAAAAGAATTTGTACACACAGTGCCT
1 ACCGATCTCACACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCT
21765694 AAGTCTATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 26 0.57
58 20 0.43
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (58 bp):
ACCGATCTCACACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATT
Found at i:21767447 original size:38 final size:38
Alignment explanation
Indices: 21767367--21767540 Score: 231
Period size: 38 Copynumber: 4.5 Consensus size: 38
21767357 CGAACACAAC
* *
21767367 ACCAGCACGAAGCCTACGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCAGATATAAT
* *
21767407 ACCAGCACTAGGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
*
21767445 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
* *
21767483 ACCAGCACGAAGTCTGCAGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
* * **
21767521 TCCAACATAAAGCCTGCGGG
1 ACCAGCACGAAGCCTGCGGG
21767541 TCATTAAGCC
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
38 95 0.81
39 5 0.04
40 18 0.15
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
Found at i:21777840 original size:51 final size:51
Alignment explanation
Indices: 21777785--21777884 Score: 123
Period size: 51 Copynumber: 2.0 Consensus size: 51
21777775 CTAATACATA
* * *
21777785 ACATGCAA-CACATCCA-CAATGAACTCGGACCTCTCAACGAGCTTGGATGTT
1 ACATG-AATCACATCCATC-ATGAACTCGAACCACTCAACGAGCTCGGATGTT
* *
21777836 ACATGAATCGCATCCATCATGAACTCGAACCACTCAATGAGCTCGGATG
1 ACATGAATCACATCCATCATGAACTCGAACCACTCAACGAGCTCGGATG
21777885 CTCGCATCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
50 2 0.05
51 39 0.93
52 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (51 bp):
ACATGAATCACATCCATCATGAACTCGAACCACTCAACGAGCTCGGATGTT
Found at i:21777921 original size:43 final size:43
Alignment explanation
Indices: 21777843--21777929 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
21777833 GTTACATGAA
* *
21777843 TCGCATCCATCATGAACTCGAACCACTCAATGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGAACCACTCAACGAGCTCGGATGC
* * * * *
21777886 TCGCATCCATAATGAACTTGGACCTCTTAACGAGCTTGGATGC
1 TCGCATCCATAATGAACTCGAACCACTCAACGAGCTCGGATGC
21777929 T
1 T
21777930 ACATACCTCA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGAACCACTCAACGAGCTCGGATGC
Found at i:21780741 original size:155 final size:155
Alignment explanation
Indices: 21780454--21780758 Score: 511
Period size: 155 Copynumber: 2.0 Consensus size: 155
21780444 AGTAGCTGCA
* * *
21780454 GAGTAGGAGACTGTAGACCAAAAGGATGGAGCGACTCGGCAATGGGAGAAGAGATGACTGGTTAA
1 GAGTAGGAGACCGTAGACCAAAAGGATGGAGCGACTAGGCAACGGGAGAAGAGATGACTGGTTAA
* * * * *
21780519 AAATTGGGGAATTGATAGTATTTGGGGCTACCACCATGGGAAGTCGAGACTTGTGATGAATAGAG
66 AAATTGGGGAATTGACAGTATCTGGGGCGACCACCATGGGAAGCCGAGACTTGTGATGAATAAAG
21780584 TTGGTTGAGCCAGAACCAGATCGGT
131 TTGGTTGAGCCAGAACCAGATCGGT
* * *
21780609 GAGTAGGAGACCGTAGGCCAAAAGGATGGAGTGACTAGGCAACGGGAGAAGAGATGACTGGTTGA
1 GAGTAGGAGACCGTAGACCAAAAGGATGGAGCGACTAGGCAACGGGAGAAGAGATGACTGGTTAA
21780674 AAATTGGGGAATTGACAGTATCTGGGGCGACCACCATGGGAAGCCGAGACTTGTGATGAATAAAG
66 AAATTGGGGAATTGACAGTATCTGGGGCGACCACCATGGGAAGCCGAGACTTGTGATGAATAAAG
21780739 TTGGTTGAGCCAGAACCAGA
131 TTGGTTGAGCCAGAACCAGA
21780759 ATTTAATAAG
Statistics
Matches: 139, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
155 139 1.00
ACGTcount: A:0.32, C:0.14, G:0.35, T:0.19
Consensus pattern (155 bp):
GAGTAGGAGACCGTAGACCAAAAGGATGGAGCGACTAGGCAACGGGAGAAGAGATGACTGGTTAA
AAATTGGGGAATTGACAGTATCTGGGGCGACCACCATGGGAAGCCGAGACTTGTGATGAATAAAG
TTGGTTGAGCCAGAACCAGATCGGT
Found at i:21785795 original size:27 final size:27
Alignment explanation
Indices: 21785757--21785812 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
21785747 AGGCCGACGC
21785757 CATGTCCCAGACAT-AGTCTTACACTGA
1 CATGTCCCAGACATGA-TCTTACACTGA
*
21785784 CATGTCCTAGACATGATCTTACACTGA
1 CATGTCCCAGACATGATCTTACACTGA
21785811 CA
1 CA
21785813 CCTCTATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CATGTCCCAGACATGATCTTACACTGA
Found at i:21785855 original size:48 final size:44
Alignment explanation
Indices: 21785783--21786040 Score: 157
Period size: 46 Copynumber: 5.6 Consensus size: 44
21785773 TCTTACACTG
* * *
21785783 ACATGTCCTAGACATGATCTTACACTGACACCTCTATATATGCCGAT
1 ACATGTCCCAGACATG-TCTTACACTGACACATCT-CATA-GCCGAT
* * *
21785830 GCCATGTCCCAGACATAGTCTTACACTGACATATCTCGTAGCCGAT
1 -ACATGTCCCAGACAT-GTCTTACACTGACACATCTCATAGCCGAT
* * *
21785876 ACATGTCCCATACATGTCTTACACTGGCTTACATCTCGA-GGCCGAT
1 ACATGTCCCAGACATGTCTTACACTGAC--ACATCTC-ATAGCCGAT
** * * * *
21785922 GTATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCA-ATGTCGAT
1 ACATGTCCCAGACATGTCTTACACT-G-ACACATCTCATA-GCCGAT
* * *
21785968 GCCATGTCCCAAACATGGTCTTACACT-A-GC-TCTCATAATGTGGCCGAT
1 -ACATGTCCCAGACAT-GTCTTACACTGACACATCTCAT-A----GCCGAT
21786016 ACATGTCCCAGACATGTCTTACACT
1 ACATGTCCCAGACATGTCTTACACT
21786041 AGCACATAAA
Statistics
Matches: 167, Mismatches: 29, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
43 5 0.03
44 13 0.08
45 15 0.09
46 60 0.36
47 28 0.17
48 45 0.27
49 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (44 bp):
ACATGTCCCAGACATGTCTTACACTGACACATCTCATAGCCGAT
Found at i:21785912 original size:46 final size:47
Alignment explanation
Indices: 21785832--21786043 Score: 199
Period size: 46 Copynumber: 4.6 Consensus size: 47
21785822 ATGCCGATGC
*
21785832 CATGTCCCAGACATAGTCTTACACT-GAC-AT-ATCTCGTA-GCCGATA
1 CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCGTAGGCCGATA
* * *
21785877 CATGTCCCATACATGTCTTACACTGGCT-TACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGTAGGCCGATA
* * * * * *
21785923 TATGTCCCAGACATGTCTTACACTAGCTCTCGTCTC-AATGTCGATGC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTAGGCCGAT-A
* *
21785970 CATGTCCCAAACATGGTCTTACACTAGCTCTCATAAT-GT-GGCCGATA
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGTAGGCCGATA
21786017 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
21786044 ACATAAATAA
Statistics
Matches: 138, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 61 0.44
47 26 0.19
48 23 0.17
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTAGGCCGATA
Found at i:21789080 original size:245 final size:245
Alignment explanation
Indices: 21788646--21789133 Score: 710
Period size: 245 Copynumber: 2.0 Consensus size: 245
21788636 CTGCTAGTAG
* *
21788646 TAATCGTATTCCGATTATTACTATCGGTTATATTTCTTCCTTTCCATCTATGAAAAATGTCTTCA
1 TAATCGTATTCCAATTATTACTATCGGTGATATTTCTTCCTTTCCATCTATGAAAAATGTCTTCA
* *
21788711 TTGCCCTTGATTTATCAACTAATCTACTTTCCATTGGACAACTAGTAGAGGATAATTGCAAAGTT
66 TTGCCCTAGATTTATCAACTAATCTACTTTCCATTGGACAACTAGTAAAGGATAATTGCAAAGTT
* * * * *
21788776 ACCTTTTATTCTTCTGGTTGTGTTATGCAGGAACTGGAATCAGGGAAGATAGAAGTTGAGGGACC
131 ACCTTTTATTCTTATGGTTATGTTATGCAAGAACTAGAATCAGGGAAGACAGAAGTTGAGGGACC
* *
21788841 TAAATGGGGTAGGCTCTTTCCTCTCCATTTCAATGAATCAGCCAAGCCTT
196 TAAATGGGGCAGACTCTTTCCTCTCCATTTCAATGAATCAGCCAAGCCTT
* *
21788891 TAATCGTATTCCAATTATTGCTATTGGTGATATTTCTT-CTTCTCCATCTATGAAAAATGTCTTC
1 TAATCGTATTCCAATTATTACTATCGGTGATATTTCTTCCTT-TCCATCTATGAAAAATGTCTTC
*** * *
21788955 ATTGCCCCTAG-TTTATTTGCTAATCTACTTTCCATTGGACAACTGGTAAATGATAATTGCAAAG
65 ATTG-CCCTAGATTTATCAACTAATCTACTTTCCATTGGACAACTAGTAAAGGATAATTGCAAAG
* * * ** *
21789019 TTACCTTTTCTTCTTATGGTTATGTTGTGCAAGAGCTAGCGTCAGGGAAGACAGTAGTTGAGGGA
129 TTACCTTTTATTCTTATGGTTATGTTATGCAAGAACTAGAATCAGGGAAGACAGAAGTTGAGGGA
* *
21789084 CCTAAATGGGGCAGACTCTTTCCTCTCCATTTTAATGAATTAGCCAAGCC
194 CCTAAATGGGGCAGACTCTTTCCTCTCCATTTCAATGAATCAGCCAAGCC
21789134 CATAAATGTG
Statistics
Matches: 215, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
244 3 0.01
245 207 0.96
246 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (245 bp):
TAATCGTATTCCAATTATTACTATCGGTGATATTTCTTCCTTTCCATCTATGAAAAATGTCTTCA
TTGCCCTAGATTTATCAACTAATCTACTTTCCATTGGACAACTAGTAAAGGATAATTGCAAAGTT
ACCTTTTATTCTTATGGTTATGTTATGCAAGAACTAGAATCAGGGAAGACAGAAGTTGAGGGACC
TAAATGGGGCAGACTCTTTCCTCTCCATTTCAATGAATCAGCCAAGCCTT
Found at i:21791092 original size:28 final size:29
Alignment explanation
Indices: 21791010--21791098 Score: 126
Period size: 29 Copynumber: 3.1 Consensus size: 29
21791000 AAAGCATGAC
*
21791010 TATGAATGTGATTTGGGCCTAATGGTCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
21791039 TACGAATGTGATTTGGGCCTAATGGGGCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
21791068 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
21791096 TAT
1 TAT
21791099 ACATGTATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 18 0.34
29 35 0.66
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.30
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:21796258 original size:49 final size:49
Alignment explanation
Indices: 21796087--21796313 Score: 303
Period size: 49 Copynumber: 4.5 Consensus size: 49
21796077 CGGATACCCG
* * * * * * * *
21796087 GTGGCCTGCACATAGTACCACCCTTATAGTCAAAGCTACCTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GACCAAGCTATC-TCTTCTCAAA
*
21796138 GTAGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCT-TTCTTAACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATCTCTTC-T--CAAA
21796190 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTCTTCTCAAA
*
21796239 GTGGCCTTCACATAGTACCACACTTGTCACCAAGCTATCTCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTCTTCTCAAA
21796288 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
21796314 AGTCACTAGT
Statistics
Matches: 161, Mismatches: 10, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
49 81 0.50
50 3 0.02
51 40 0.25
52 37 0.23
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.28
Consensus pattern (49 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTCTTCTCAAA
Found at i:21800220 original size:27 final size:27
Alignment explanation
Indices: 21800204--21800333 Score: 154
Period size: 27 Copynumber: 4.8 Consensus size: 27
21800194 TGATTTGTAG
* * *
21800204 AATTACCATTTTACCCTAGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
** *
21800231 AATTACTGTTTCACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* *
21800258 AATTACCGTTTTACCCTCAATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
*
21800285 AATTACCATTTTACCATC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTACAA
*
21800312 AATTACCGTTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
21800334 GTAAAATTAC
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 86 0.98
28 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:21800442 original size:27 final size:27
Alignment explanation
Indices: 21800332--21800515 Score: 174
Period size: 27 Copynumber: 6.8 Consensus size: 27
21800322 TTACCCTCGA
* *
21800332 TTGTAAAATTACTAAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAAT
** * *
21800358 AGGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAAT
21800386 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAAT
** **
21800413 TTGTAAAATTACCAAAATACTACTGGT
1 TTGTAAAATTACCAAAATACCCCTAAT
* *
21800440 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AAT
* * *
21800467 TTGTAAAACTACCAAAATACCCTTGAT
1 TTGTAAAATTACCAAAATACCCCTAAT
** *
21800494 TTACAAAATTACAAAAATACCC
1 TTGTAAAATTACCAAAATACCC
21800516 TTGACTTTCT
Statistics
Matches: 127, Mismatches: 27, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
26 3 0.02
27 118 0.93
28 6 0.05
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAAT
Found at i:21800452 original size:81 final size:81
Alignment explanation
Indices: 21800365--21800513 Score: 210
Period size: 81 Copynumber: 1.8 Consensus size: 81
21800355 TGTAGGATAG
* * ** *
21800365 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAA
1 AATTACCAAAATACCCTC-AATTTGTAAAACTACCAAAATACCCCTAATTTACAAAATTACAAAA
21800429 ATACTACTGGTTTGTGA
65 ATACTACTGGTTTGTGA
* * *
21800446 AATTACCGAAATACCCTCAATTTGTAAAACTACCAAAATACCCTTGATTTACAAAATTACAAAAA
1 AATTACCAAAATACCCTCAATTTGTAAAACTACCAAAATACCCCTAATTTACAAAATTACAAAAA
21800511 TAC
66 TAC
21800514 CCTTGACTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
81 58 0.98
82 1 0.02
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAACTACCAAAATACCCCTAATTTACAAAATTACAAAAA
TACTACTGGTTTGTGA
Found at i:21800516 original size:27 final size:28
Alignment explanation
Indices: 21800471--21800574 Score: 88
Period size: 27 Copynumber: 3.8 Consensus size: 28
21800461 CTCAATTTGT
* *
21800471 AAAACTACCAAAATACCCTTGA-TTTAC
1 AAAATTACAAAAATACCCTTGACTTTAC
21800498 AAAATTACAAAAATACCCTTGACTTT-C
1 AAAATTACAAAAATACCCTTGACTTTAC
* * * * *
21800525 TAAAAATTATAGAAATATCATT-AGTTTAC
1 --AAAATTACAAAAATACCCTTGACTTTAC
**
21800554 AAAATTACTGAAATACCCTTG
1 AAAATTACAAAAATACCCTTG
21800575 GTTTGTAGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
27 37 0.61
28 7 0.11
29 17 0.28
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (28 bp):
AAAATTACAAAAATACCCTTGACTTTAC
Found at i:21800673 original size:27 final size:27
Alignment explanation
Indices: 21800631--21800695 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
21800621 ACCCCTAATA
* *
21800631 GGTAAAAAGACCGTAA-AGCCCTTGTAG
1 GGTAAAATGACAGTAATA-CCCTTGTAG
* *
21800658 GGTAAAGTGACAGTAATACCCTTGTAT
1 GGTAAAATGACAGTAATACCCTTGTAG
21800685 GGTAAAATGAC
1 GGTAAAATGAC
21800696 GAATATGCTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACAGTAATACCCTTGTAG
Found at i:21801539 original size:25 final size:25
Alignment explanation
Indices: 21801501--21801570 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
21801491 AGGAAGTGCT
* * *
21801501 AAAAGGGCTATGCCCTAGTTTA-CTG
1 AAAAGGGCTTTGCCCCAGTTTATC-A
21801526 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
21801551 AAAAGGGATTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
21801571 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 39 0.98
26 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:21804117 original size:27 final size:27
Alignment explanation
Indices: 21804087--21804227 Score: 155
Period size: 27 Copynumber: 5.3 Consensus size: 27
21804077 TACTGAAATG
** *
21804087 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * * *
21804114 CCCTCGATTTATAGAATTA-CGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
*
21804140 CCCTCGATTTACAAAATTACCCTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
21804167 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
21804194 CCCTC-AGTTTACAAAATTA--GTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
21804219 CCCTCGATT
1 CCCTCGATT
21804228 GTGAAATTAC
Statistics
Matches: 101, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
25 12 0.12
26 24 0.24
27 65 0.64
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:21804158 original size:53 final size:54
Alignment explanation
Indices: 21804087--21804227 Score: 155
Period size: 53 Copynumber: 2.7 Consensus size: 54
21804077 TACTGAAATG
** * * * *
21804087 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTA-CGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTCA
* * *
21804140 CCCTCGATTTACAAAATTACCCTTTTACCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTCA
*
21804194 CCCTC-AGTTTACAAAATTA--GTTTTACCCTCGATT
1 CCCTCGA-TTTACAAAATTACCATTTTACCCTCGATT
21804228 GTGAAATTAC
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
52 13 0.17
53 40 0.53
54 22 0.29
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTCA
Found at i:21804273 original size:52 final size:52
Alignment explanation
Indices: 21804217--21804403 Score: 157
Period size: 52 Copynumber: 3.6 Consensus size: 52
21804207 AAATTAGTTT
* * * * *
21804217 TACCCTCGATTGTGAAATTA-CTAAATACCCCTGTAGGATAGAATTACCAAAA
1 TACCCTAGTTTGTGAAATTACCAAAATACCCCTATAGG-TAAAATTACCAAAA
* ** *
21804269 TACCCTAGTTTGTAAAATTACCAAAATA-CCCTATTTGTAAAATTACCGAAA
1 TACCCTAGTTTGTGAAATTACCAAAATACCCCTATAGGTAAAATTACCAAAA
* * * **
21804320 TACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTAGTTTGTGAAATTACCAAAATACCC-CTATAGGTAAAATTACCAAAA
***
21804374 TACCCCTA-TTTACAAAATTA-CAAAATACCC
1 TA-CCCTAGTTTGTGAAATTACCAAAATACCC
21804404 TTGACTTTCT
Statistics
Matches: 111, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
51 16 0.14
52 53 0.48
53 17 0.15
54 23 0.21
55 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (52 bp):
TACCCTAGTTTGTGAAATTACCAAAATACCCCTATAGGTAAAATTACCAAAA
Found at i:21804274 original size:26 final size:26
Alignment explanation
Indices: 21804231--21804378 Score: 104
Period size: 27 Copynumber: 5.7 Consensus size: 26
21804221 CTCGATTGTG
*
21804231 AAATTA-CTAAATACCCCT-GTAGGATA
1 AAATTACCAAAATA-CCCTAGTAGG-TA
* **
21804257 GAATTACCAAAATACCCTAGTTTGTA
1 AAATTACCAAAATACCCTAGTAGGTA
**
21804283 AAATTACCAAAATACCCTA-TTTGTA
1 AAATTACCAAAATACCCTAGTAGGTA
* * ** *
21804308 AAATTACCGAAATACCACTGGTTTGTG
1 AAATTACCAAAATACC-CTAGTAGGTA
* * **
21804335 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCT-AGTAGGTA
21804362 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
21804379 CTATTTACAA
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
25 21 0.20
26 33 0.31
27 51 0.49
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.28
Consensus pattern (26 bp):
AAATTACCAAAATACCCTAGTAGGTA
Found at i:21804340 original size:27 final size:26
Alignment explanation
Indices: 21804258--21804404 Score: 174
Period size: 27 Copynumber: 5.7 Consensus size: 26
21804248 TGTAGGATAG
*
21804258 AATTACCAAAATACCCTAGTTTGTAA
1 AATTACCAAAATACCCTAATTTGTAA
21804284 AATTACCAAAATACCCT-ATTTGTAA
1 AATTACCAAAATACCCTAATTTGTAA
* ** *
21804309 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACC-CTAATTTGTAA
*
21804336 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AATTTGTAA
**
21804363 AATTACCAAAATACCCCT-ATTTACAA
1 AATTACCAAAATA-CCCTAATTTGTAA
21804389 AATTA-CAAAATACCCT
1 AATTACCAAAATACCCT
21804405 TGACTTTCTA
Statistics
Matches: 107, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.04
25 28 0.26
26 32 0.30
27 39 0.36
28 4 0.04
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTAATTTGTAA
Found at i:21804378 original size:79 final size:78
Alignment explanation
Indices: 21804258--21804402 Score: 220
Period size: 79 Copynumber: 1.8 Consensus size: 78
21804248 TGTAGGATAG
* ** *
21804258 AATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATA-CCCTATTTGTAAAATTACCGAAATA
1 AATTACCAAAATACCCTAATTTGTAAAATTACCAAAATACCCCTATTTACAAAATTA-CAAAATA
21804322 CCACTGGTTTGTGA
65 CCACTGGTTTGTGA
*
21804336 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTATTTACAAAATTACAAAATA
1 AATTACCAAAATACCCT-AATTTGTAAAATTACCAAAATACCCCTATTTACAAAATTACAAAATA
21804401 CC
65 CC
21804403 CTTGACTTTC
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
78 16 0.27
79 29 0.48
80 15 0.25
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (78 bp):
AATTACCAAAATACCCTAATTTGTAAAATTACCAAAATACCCCTATTTACAAAATTACAAAATAC
CACTGGTTTGTGA
Found at i:21804454 original size:27 final size:27
Alignment explanation
Indices: 21804382--21804466 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
21804372 AATACCCCTA
* *
21804382 TTTACAAAATTACA-AAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTTG-G
*
21804409 TTT-CTAAAAATTATAGAAATACCGTTGG
1 TTTAC--AAAATTATAGAAATACCCTTGG
21804437 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCCTTGG
21804464 TTT
1 TTT
21804467 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
26 1 0.02
27 25 0.51
28 12 0.24
29 11 0.22
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTGG
Found at i:21804477 original size:108 final size:105
Alignment explanation
Indices: 21804255--21804480 Score: 249
Period size: 108 Copynumber: 2.1 Consensus size: 105
21804245 CCCTGTAGGA
** * *
21804255 TAGAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTATTTGTAAAATTACCGAAA
1 TAGAATTACCAAAATACCCTAGTTTACAAAATTACCAAAATACCCTATTTCTAAAATTACAGAAA
***
21804320 TACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTG
66 TACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
* *
21804360 TAAAATTACCAAAATACCCCTA-TTTACAAAATTA-CAAAATACCCTTGACTTTCTAAAAATTAT
1 TAGAATTACCAAAATA-CCCTAGTTTACAAAATTACCAAAATACCC-T-A-TTTCT-AAAATTAC
** * ***
21804423 AGAAATACCGTTGGTTTACAAAATTACTGAAATACCCTTGGTTTG
61 AGAAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
*
21804468 TAGATTTACCAAA
1 TAGAATTACCAAA
21804481 CACCCTTATA
Statistics
Matches: 99, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
104 10 0.10
105 26 0.26
106 6 0.06
107 4 0.04
108 53 0.54
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (105 bp):
TAGAATTACCAAAATACCCTAGTTTACAAAATTACCAAAATACCCTATTTCTAAAATTACAGAAA
TACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
Found at i:21805469 original size:24 final size:25
Alignment explanation
Indices: 21805393--21805462 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
21805383 AGGAAGTGCT
* * *
21805393 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
21805418 AAAAGGGCTTTCCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
21805443 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
21805463 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:21805776 original size:30 final size:31
Alignment explanation
Indices: 21805678--21805791 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
21805668 CGTTGACAGT
*
21805678 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
21805709 AAAGGCTTCGGCCCTGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
21805740 AAAGGCTTCGGCCCAGTGATATGATTTATG-
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
21805770 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
21805792 TCAAGACTAA
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
29 5 0.06
30 17 0.21
31 58 0.73
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:21808030 original size:27 final size:27
Alignment explanation
Indices: 21808013--21808156 Score: 103
Period size: 27 Copynumber: 5.3 Consensus size: 27
21808003 TACTGAATTG
* *
21808013 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATATTA
* *
21808040 CCCTCGATTTATAGAATTATCGT-TTCA
1 CCCTCGATTTATAGAATTACCATATT-A
* * * *
21808067 CCCTCGATTTACAAAATTACCCTTTTA
1 CCCTCGATTTATAGAATTACCATATTA
* * * *
21808094 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATATTA
* * * * *
21808121 CCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTATAGAATTACCATATTA
21808148 CCCTCGATT
1 CCCTCGATT
21808157 GTGAAATTAC
Statistics
Matches: 102, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.03
27 96 0.94
28 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATATTA
Found at i:21808085 original size:54 final size:54
Alignment explanation
Indices: 21808013--21808156 Score: 164
Period size: 54 Copynumber: 2.7 Consensus size: 54
21808003 TACTGAATTG
** * * * * *
21808013 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTCA
* * *
21808067 CCCTCGATTTACAAAATTACCCTTTTACCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTCA
* *
21808121 CCCTC-AGTTTACAAAATTATCGTTTTACCCTCGATT
1 CCCTCGA-TTTACAAAATTACCATTTTACCCTCGATT
21808157 GTGAAATTAC
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 1 0.01
54 75 0.99
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTCA
Found at i:21808178 original size:27 final size:27
Alignment explanation
Indices: 21808148--21808340 Score: 126
Period size: 27 Copynumber: 7.1 Consensus size: 27
21808138 TATCGTTTTA
*
21808148 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCTCGATTGTGAAATTACCGAAATAC
* *
21808175 CCCT-G-TAG-GATAGAATTACCAAAATAC
1 CCCTCGATTGTG--A-AATTACCGAAATAC
* * * * * *
21808202 CACTAGTTTGTAAAACTACCAAAATAC
1 CCCTCGATTGTGAAATTACCGAAATAC
* * *
21808229 CCCTAGTTTGTAAAATTACCGAAATAC
1 CCCTCGATTGTGAAATTACCGAAATAC
** * *
21808256 CATTGGTTTGTGAAATTACCGAAATA-
1 CCCTCGATTGTGAAATTACCGAAATAC
*
21808282 CCCTCAATTTGTGAAATTACCGAAATA-
1 CCCTCGA-TTGTGAAATTACCGAAATAC
* * *
21808309 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTCGA-TTGTGAAATTACCGAAATAC
21808337 CCCT
1 CCCT
21808341 TATTTATAAA
Statistics
Matches: 137, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.01
25 2 0.01
26 4 0.03
27 122 0.89
28 6 0.04
29 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.28
Consensus pattern (27 bp):
CCCTCGATTGTGAAATTACCGAAATAC
Found at i:21808254 original size:54 final size:53
Alignment explanation
Indices: 21808188--21808364 Score: 212
Period size: 54 Copynumber: 3.3 Consensus size: 53
21808178 TGTAGGATAG
* *
21808188 AATTACCAAAATACCACTAGTTTGTAAAACTACCAAAATACCCCTAGTTTGTAA
1 AATTACCGAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTA-TTTGTAA
* * * * * *
21808242 AATTACCGAAATACCATTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTGA
1 AATTACCGAAATACCACTAGTTTGTAAAATTACCAAAATACCC-CTATTTGTAA
* *
21808296 AATTACCGAAATACC-CTCAATTTGTAAAATTACCAAAATACCCCTTATTTATAA
1 AATTACCGAAATACCACT-AGTTTGTAAAATTACCAAAATACCCC-TATTTGTAA
*
21808350 AATTACAGAAATACC
1 AATTACCGAAATACC
21808365 CTTGACTTTC
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.02
54 99 0.96
55 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (53 bp):
AATTACCGAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTATTTGTAA
Found at i:21808273 original size:81 final size:81
Alignment explanation
Indices: 21808188--21808337 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
21808178 TGTAGGATAG
* * *
21808188 AATTACCAAAATACCACT-AGTTTGTAAAACTACCAAAATACCC-CTAGTTTGTAAAATTACCGA
1 AATTACCAAAATACC-CTCAATTTGTAAAACTACCAAAATACCCTC-AATTTGTAAAATTACCAA
21808251 AATACCATTGGTTTGTGA
64 AATACCATTGGTTTGTGA
* * * *
21808269 AATTACCGAAATACCCTCAATTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCTCAATTTGTAAAACTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
21808334 TACC
66 TACC
21808338 CCTTATTTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
80 2 0.03
81 57 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAACTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
TACCATTGGTTTGTGA
Found at i:21808345 original size:27 final size:27
Alignment explanation
Indices: 21808188--21808365 Score: 152
Period size: 27 Copynumber: 6.6 Consensus size: 27
21808178 TGTAGGATAG
*
21808188 AATTACCAAAATACCAC-TAGTTTGTAA
1 AATTACCAAAATACCCCTTA-TTTGTAA
*
21808215 AACTACCAAAATACCCC-TAGTTTGTAA
1 AATTACCAAAATACCCCTTA-TTTGTAA
* * * *
21808242 AATTACCGAAATA-CCATTGGTTTGTGA
1 AATTACCAAAATACCCCTT-ATTTGTAA
* * *
21808269 AATTACCGAAATA-CCCTCAATTTGTGA
1 AATTACCAAAATACCCCT-TATTTGTAA
* *
21808296 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-TATTTGTAA
*
21808323 AATTACCAAAATACCCCTTATTTATAA
1 AATTACCAAAATACCCCTTATTTGTAA
21808350 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
21808366 TTGACTTTCT
Statistics
Matches: 132, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.03
27 124 0.94
28 4 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTTATTTGTAA
Found at i:21808353 original size:81 final size:80
Alignment explanation
Indices: 21808188--21808366 Score: 200
Period size: 81 Copynumber: 2.2 Consensus size: 80
21808178 TGTAGGATAG
* * * *
21808188 AATTACCAAAATACCACTAGTTTGTAAAACTACCAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCGAAATACC-CTAATTTGTAAAACTACCAAAATACCCCTAATTTGTAAAATTACCAAAA
* * *
21808253 TACCATTGGTTTGTGA
65 TACCATTGATTTATAA
* * *
21808269 AATTACCGAAATACCCTCAATTTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAA
1 AATTACCGAAATACCCT-AATTTGTAAAACTACCAAAATACCCCT-AATTTGTAAAATTACCAAA
*
21808333 ATACCCCTT-ATTTATAA
64 ATA-CCATTGATTTATAA
*
21808350 AATTACAGAAATACCCT
1 AATTACCGAAATACCCT
21808367 TGACTTTCTA
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 6 0.07
81 73 0.88
82 4 0.05
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AATTACCGAAATACCCTAATTTGTAAAACTACCAAAATACCCCTAATTTGTAAAATTACCAAAAT
ACCATTGATTTATAA
Found at i:21809390 original size:25 final size:25
Alignment explanation
Indices: 21809355--21809449 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
21809345 AGGAAGTGCT
21809355 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTACCG
*
21809380 GAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTACCG
* * *
21809405 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCG
21809430 AAAAGGGCT-TGGCCCCAGTT
1 AAAAGGGCTAT-GCCCCAGTT
21809450 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
24 1 0.02
25 63 0.98
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTACCG
Found at i:21809456 original size:24 final size:23
Alignment explanation
Indices: 21809355--21809476 Score: 86
Period size: 25 Copynumber: 5.0 Consensus size: 23
21809345 AGGAAGTGCT
*
21809355 AAAAGGGCTAT-GCCCCAGTTTACC
1 AAAAGGGCT-TGGCCCCAG-TTATC
* *
21809379 GGAAAGGGCTAT-GCCCCAGTTTACC
1 -AAAAGGGCT-TGGCCCCAG-TTATC
*
21809404 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTGGCCCCAG-TTATC
*
21809429 AAAAAGGGCTTGGCCCCAGTTATT
1 -AAAAGGGCTTGGCCCCAGTTATC
*
21809453 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTGGCC-CCAGTTAT
21809477 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
23 5 0.06
24 13 0.15
25 69 0.79
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (23 bp):
AAAAGGGCTTGGCCCCAGTTATC
Found at i:21809704 original size:31 final size:31
Alignment explanation
Indices: 21809669--21809845 Score: 320
Period size: 31 Copynumber: 5.7 Consensus size: 31
21809659 CGTTTACAGT
21809669 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
21809700 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
21809731 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
21809762 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
21809793 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
21809824 AAAGGCTTTGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
21809846 TCAAGACTAA
Statistics
Matches: 142, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
30 5 0.04
31 137 0.96
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:21828526 original size:19 final size:20
Alignment explanation
Indices: 21828491--21828530 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
21828481 TGCATTCCAT
*
21828491 AACTCAAGATAACATAAAAA
1 AACTCAAGATAAAATAAAAA
21828511 AACTCAA-ATAAAATAAAAA
1 AACTCAAGATAAAATAAAAA
21828530 A
1 A
21828531 TAATGTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.70, C:0.12, G:0.03, T:0.15
Consensus pattern (20 bp):
AACTCAAGATAAAATAAAAA
Found at i:21837893 original size:29 final size:29
Alignment explanation
Indices: 21837861--21837937 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 29
21837851 ATTCATATTC
21837861 ATATGGCCCATTAGGCCCAAATCATC-TGT
1 ATATGGCCCATTAGGCCCAAATCA-CATGT
*
21837890 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
21837919 ATATGGCCCGTTTGGCCCA
1 ATATGGCCCATTAGGCCCA
21837938 GTCAAATTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 1 0.02
29 43 0.98
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:21839472 original size:16 final size:17
Alignment explanation
Indices: 21839441--21839479 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
21839431 ACAAAGAGAG
21839441 TTTGGGATTTCAGGATT
1 TTTGGGATTTCAGGATT
*
21839458 TTTGGG-TTTCGGGATT
1 TTTGGGATTTCAGGATT
21839474 TTTGGG
1 TTTGGG
21839480 GCATTACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.10, C:0.05, G:0.36, T:0.49
Consensus pattern (17 bp):
TTTGGGATTTCAGGATT
Found at i:21849106 original size:48 final size:48
Alignment explanation
Indices: 21848986--21849108 Score: 192
Period size: 48 Copynumber: 2.6 Consensus size: 48
21848976 TGATATGTGT
* *
21848986 GCTAGTGTAAGACATGTCTAGAACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACATACAA
* *
21849034 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAGACATACAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACATACAA
* *
21849082 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTAGGACATG
21849109 GCGTCAGCTT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACATACAA
Found at i:21849196 original size:49 final size:47
Alignment explanation
Indices: 21849085--21849258 Score: 149
Period size: 49 Copynumber: 3.7 Consensus size: 47
21849075 CATACAAGCT
* * * * *
21849085 AGTGTAAGACCTGTCTGGGACATGGCGTC-AGCT-T-GTTGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTATAGATGAGAGTC
* *
21849129 AGTGTAAAACCTTTCTGGGACATGGCATCGACACTGATAGATGAGAG-C
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CT-ATAGATGAGAGTC
* * * * *
21849177 TAGTGTAAGACCTGTCTGGGACACGACATCGGCCTCTATATATGAAAGTC
1 -AGTGTAAGACCTGTCTGGGACATGGCATC-GAC-CTATAGATGAGAGTC
* *
21849227 AGTGTAAGACCTGTTTGGAACATGGCATCGAC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC
21849259 TTTGATATGC
Statistics
Matches: 102, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
44 26 0.25
45 1 0.01
46 2 0.02
48 4 0.04
49 64 0.63
50 5 0.05
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTATAGATGAGAGTC
Found at i:21856960 original size:48 final size:48
Alignment explanation
Indices: 21856847--21857012 Score: 189
Period size: 48 Copynumber: 3.5 Consensus size: 48
21856837 TATGTGTGCT
* * * *
21856847 AGTGTAAGACATGTTTGGGACATGCATCGACCAC-A-TTAT-CAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACA-AGCC
* *
21856893 AGTGTAAGACACGTTTGGGACATGCATCGGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCC
21856941 AGTGTAAGACATGTCTGGGACATGCATTC-GCCTCGAGATATAC-AGCC
1 AGTGTAAGACATGTCTGGGACATGCA-TCGGCCTCGAGATATACAAGCC
* * *
21856988 TAGTGTAAGACCTATCTGAGACATG
1 -AGTGTAAGACATGTCTGGGACATG
21857013 GCGTCAGCTT
Statistics
Matches: 106, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
46 31 0.29
47 5 0.05
48 66 0.62
49 4 0.04
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCC
Found at i:21862354 original size:20 final size:19
Alignment explanation
Indices: 21862331--21862432 Score: 55
Period size: 20 Copynumber: 5.2 Consensus size: 19
21862321 TGGGGCATGT
21862331 AAGTGCGATCAGGGGTATCG
1 AAGTGCGATCAGGGGTA-CG
** * *
21862351 AAGTAAGAT-AGGGGCATG
1 AAGTGCGATCAGGGGTACG
* *
21862369 TAACTGCGATTAGGGGTACTG
1 -AAGTGCGATCAGGGGTAC-G
* * **
21862390 ATGTACGA-CAGGGACACG
1 AAGTGCGATCAGGGGTACG
21862408 TAAGTGCGATCAGGGGTACCG
1 -AAGTGCGATCAGGGGTA-CG
21862429 AAGT
1 AAGT
21862433 ACGACAAGGG
Statistics
Matches: 57, Mismatches: 19, Indels: 12
0.65 0.22 0.14
Matches are distributed among these distances:
18 2 0.04
19 24 0.42
20 28 0.49
21 3 0.05
ACGTcount: A:0.29, C:0.15, G:0.36, T:0.20
Consensus pattern (19 bp):
AAGTGCGATCAGGGGTACG
Found at i:21862435 original size:39 final size:39
Alignment explanation
Indices: 21862285--21862451 Score: 156
Period size: 39 Copynumber: 4.3 Consensus size: 39
21862275 ATGTAACCAC
* * * * * *
21862285 GACACGAAAGTGCTATCAAGAGTACCGAAGTACAACTGG
1 GACACGTAAGTGCGATCAGGGGTACCGAAGTACGACAGG
* * * * *
21862324 GGCATGTAAGTGCGATCAGGGGTATCGAAGTAAGATAGG
1 GACACGTAAGTGCGATCAGGGGTACCGAAGTACGACAGG
* * * * * *
21862363 GGCATGTAACTGCGATTAGGGGTACTGATGTACGACAGG
1 GACACGTAAGTGCGATCAGGGGTACCGAAGTACGACAGG
21862402 GACACGTAAGTGCGATCAGGGGTACCGAAGTACGACAAGG
1 GACACGTAAGTGCGATCAGGGGTACCGAAGTACGAC-AGG
*
21862442 G-CACATAAGT
1 GACACGTAAGT
21862452 ACAACCCGGG
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 98 0.96
40 4 0.04
ACGTcount: A:0.32, C:0.17, G:0.33, T:0.18
Consensus pattern (39 bp):
GACACGTAAGTGCGATCAGGGGTACCGAAGTACGACAGG
Found at i:21868813 original size:50 final size:49
Alignment explanation
Indices: 21868691--21868914 Score: 234
Period size: 50 Copynumber: 4.5 Consensus size: 49
21868681 TGAGGTCGCA
* * * * * *
21868691 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAAATGTGATCACG
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCAG-ATAAT-TGGTCACG
** ** **
21868742 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATT-GGTCACG
*
21868792 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCACG
* * * * *
21868841 TGTGTAGTACTAAGTACAGGCTACTAC-TATACCGGATAATTGCTCGCA
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCACG
* *
21868889 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTACAGGCTACTA
21868915 TGCATACCAA
Statistics
Matches: 149, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
48 41 0.28
49 35 0.23
50 43 0.29
51 30 0.20
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:21871551 original size:35 final size:34
Alignment explanation
Indices: 21871510--21871592 Score: 103
Period size: 35 Copynumber: 2.4 Consensus size: 34
21871500 CTGATATGAT
**
21871510 AATGGGCTAAGGCCCAGACTGCTACTGTTACTGA
1 AATGGGCTAAGGCCCAGACTGCTACTACTACTGA
** *
21871544 AATTGGGCTCTGGCCTAGACTGCTACTACTACTGA
1 AA-TGGGCTAAGGCCCAGACTGCTACTACTACTGA
*
21871579 AATAGGCTAAGGCC
1 AATGGGCTAAGGCC
21871593 TAACTGATCC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
34 11 0.28
35 29 0.73
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (34 bp):
AATGGGCTAAGGCCCAGACTGCTACTACTACTGA
Found at i:21884416 original size:55 final size:55
Alignment explanation
Indices: 21884283--21884417 Score: 144
Period size: 55 Copynumber: 2.5 Consensus size: 55
21884273 GACATGGCCG
* * ** * ** *
21884283 TGGGCGAACCTACCAAAACAACACGGGTGTGTGACACGCTCGTGCCTTGAAACCG
1 TGGGCGAACCTGCCAAAACAACACGAGCCTGTGACACGCCCGTGCCAAGAAACCA
* * ** *
21884338 TGGCCGAACCTGTCAAATTAACACGAGCCTGTGACACGCCCGTGCCAAGCAACCA
1 TGGGCGAACCTGCCAAAACAACACGAGCCTGTGACACGCCCGTGCCAAGAAACCA
*
21884393 TGGGTGAACCTGCCAAAACAACACG
1 TGGGCGAACCTGCCAAAACAACACG
21884418 GGCGCGGCCC
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
55 62 1.00
ACGTcount: A:0.30, C:0.31, G:0.24, T:0.15
Consensus pattern (55 bp):
TGGGCGAACCTGCCAAAACAACACGAGCCTGTGACACGCCCGTGCCAAGAAACCA
Found at i:21897777 original size:118 final size:119
Alignment explanation
Indices: 21897596--21897817 Score: 299
Period size: 118 Copynumber: 1.9 Consensus size: 119
21897586 TCCTCGTTCA
*
21897596 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
21897661 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * **
21897715 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
21897777 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
21897818 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 66 0.73
119 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:21897817 original size:40 final size:40
Alignment explanation
Indices: 21897594--21897817 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
21897584 GCTCCTCGTT
* *
21897594 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
21897634 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
21897674 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
21897714 C-AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
21897752 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
21897793 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
21897818 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 24 0.15
39 21 0.13
40 107 0.65
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:21903811 original size:46 final size:46
Alignment explanation
Indices: 21903744--21903915 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
21903734 AACCCACCCC
* * * *
21903744 TAAGTAAACTCGGAATCAACTCAACGAGCTCGGGCATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
21903790 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
21903838 TCA-CGAACTC-GAACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAG-ACTCAACTCAACGAGTTCGGGCATTTGCATCCA
21903883 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
21903916 ATGCTTAACC
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 56 0.55
47 27 0.27
48 3 0.03
49 1 0.01
50 6 0.06
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:21903861 original size:93 final size:93
Alignment explanation
Indices: 21903750--21903919 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
21903740 CCCCTAAGTA
* *
21903750 AACTCGGAATCAACTCAACGAGCTCGGGCATTTGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
21903815 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGTTCGGATGCCTAGTTACATTTCACG
*
21903843 AACTC-GAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 AACTCGGAA-TCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
21903907 CGAGTTCGGATGC
65 CGAGTTCGGATGC
21903920 TTAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 3 0.04
93 70 0.96
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACG
Found at i:21903935 original size:46 final size:46
Alignment explanation
Indices: 21903742--21903935 Score: 138
Period size: 46 Copynumber: 4.2 Consensus size: 46
21903732 GTAACCCACC
* * * * **
21903742 CCTAAGTAAACTCGGAATCAACTCAACGAGCTCGG--GCATTTGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGC-TTACCAT
21903787 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CAT
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG-C---TTACCAT
* * *
21903837 -TTCA-CGAACTC-GAACTCAACTCAACGAGTTCGGA--CATT-CGCAT
1 CCTAAGTGAACTCAG-ACTCAACTCAACGAGTTCGGATGC-TTAC-CAT
21903880 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTTAACCAT
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTT-ACCAT
21903928 CCT-AGTGA
1 CCTAAGTGA
21903936 CATGTCACTT
Statistics
Matches: 119, Mismatches: 13, Indels: 33
0.72 0.08 0.20
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 4 0.03
46 62 0.52
47 31 0.26
48 9 0.08
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTTACCAT
Found at i:21912314 original size:48 final size:45
Alignment explanation
Indices: 21912239--21912361 Score: 142
Period size: 48 Copynumber: 2.6 Consensus size: 45
21912229 TGTGTACTAA
*
21912239 TGTAAGACATATCTAGGACATGCATCGGCCACATT-ATGAGAGCCAG
1 TGTAAGACATGTCTAGGACATGCATCGG-C-CATTGATGAGAGCCAG
* * *
21912285 TGTAAGACCATGTTTGGGACATTGCATCGG-CATTGAGATGAGAGCTAG
1 TGTAAGA-CATGTCTAGGACA-TGCATCGGCCATT--GATGAGAGCCAG
21912333 TGTAAGACATGTCTAGGACATGCATCGGC
1 TGTAAGACATGTCTAGGACATGCATCGGC
21912362 TTTGAGATGT
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
45 4 0.06
46 15 0.23
47 21 0.32
48 25 0.38
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (45 bp):
TGTAAGACATGTCTAGGACATGCATCGGCCATTGATGAGAGCCAG
Found at i:21912381 original size:46 final size:46
Alignment explanation
Indices: 21912239--21912408 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 46
21912229 TGTGTACTAA
* *** * *
21912239 TGTAAGACATATCTAGGACATGCATCGGC-CACATTATGAGAGCCAG
1 TGTAAGACATGTCTAGGACATGCATCGGCTTTGA-GATGAGAGCAAG
* * * *
21912285 TGTAAGACCATGTTTGGGACATTGCATCGGCATTGAGATGAGAGCTAG
1 TGTAAGA-CATGTCTAGGACA-TGCATCGGCTTTGAGATGAGAGCAAG
21912333 TGTAAGACATGTCTAGGACATGCATCGGCTTTGAGATGTA-AGCAAG
1 TGTAAGACATGTCTAGGACATGCATCGGCTTTGAGATG-AGAGCAAG
* * *
21912379 TGTAGGACGTGTCTTGGACA-GCCATCGGCT
1 TGTAAGACATGTCTAGGACATG-CATCGGCT
21912409 ATAAGATGTG
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 54 0.52
47 22 0.21
48 26 0.25
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTCTAGGACATGCATCGGCTTTGAGATGAGAGCAAG
Found at i:21929257 original size:47 final size:45
Alignment explanation
Indices: 21929187--21929351 Score: 129
Period size: 46 Copynumber: 3.6 Consensus size: 45
21929177 TATGTATGTT
* * * **
21929187 AGTGTAAGACATGTTTAGCACATGCATCGGCCAAATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC--ATTAACAAGAGCC
*
21929233 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAAACAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATT--AACAAGAGCC
* * * * *
21929281 AGTGTATGACATGTCTGGGACATGCATCGGCC-TTGAGATGTAAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATTAACAAG--AGCC
*
21929327 AGTGTAAGACGTGTCTGGGACATGC
1 AGTGTAAGACATGTCTGGGACATGC
21929352 TTTGGCTATG
Statistics
Matches: 97, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
44 3 0.03
45 3 0.03
46 43 0.44
47 27 0.28
48 21 0.22
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATTAACAAGAGCC
Found at i:21929279 original size:48 final size:49
Alignment explanation
Indices: 21929227--21929350 Score: 150
Period size: 46 Copynumber: 2.6 Consensus size: 49
21929217 CCAAATTATG
21929227 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-A-ACA
1 AGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATTGAGATACA
* * * **
21929275 AGAGCTAGTGTATGACATGTCTGGGACAT-GCATCGGCCTTGAGATGTA
1 AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATACA
*
21929323 A-A-CCAGTGTAAGACGTGTCTGGGACATG
1 AGAGCCAGTGTAAGACATGTCTGGGACATG
21929351 CTTTGGCTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
46 34 0.52
47 16 0.25
48 15 0.23
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATACA
Found at i:21937077 original size:46 final size:47
Alignment explanation
Indices: 21936989--21937207 Score: 200
Period size: 46 Copynumber: 4.7 Consensus size: 47
21936979 TTATTTGTGT
* * *
21936989 GCCAGTATAAGA-TATGTCTGGGACAT-GCATCGGCCTCGAGATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAGATGT-A
21937035 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACAAGATGT-
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CAAGATGTA
* * * * **
21937079 GTCAGTCTAAGACCATGTGTGGGACATGGCGTCGGCCTCAATTTTGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAA-GATG-TA
* * * * * *
21937128 GTCAATGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATG-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCA-AGATGTA
*
21937175 GCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
21937208 TGTAACAGCC
Statistics
Matches: 143, Mismatches: 22, Indels: 15
0.79 0.12 0.08
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 47 0.33
47 35 0.24
48 1 0.01
49 35 0.24
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAGATGTA
Found at i:21955236 original size:24 final size:25
Alignment explanation
Indices: 21955204--21955253 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
21955194 TAATAATAGA
*
21955204 ATATAAATAAAAATAATTAT-TAAT
1 ATATAAATAAAAATAAATATATAAT
*
21955228 ATATAAATAAAGATAAATATATAAT
1 ATATAAATAAAAATAAATATATAAT
21955253 A
1 A
21955254 CAAGTTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (25 bp):
ATATAAATAAAAATAAATATATAAT
Found at i:21955282 original size:3 final size:3
Alignment explanation
Indices: 21955269--21955489 Score: 59
Period size: 3 Copynumber: 71.0 Consensus size: 3
21955259 TTAAAACCTT
* * * * *
21955269 TAA TGA TAA TAA TATA TAGA TAA AAA TGTA TAA TAA T-A TAA AAA TGACT
1 TAA TAA TAA TAA TA-A TA-A TAA TAA T-AA TAA TAA TAA TAA TAA T-A-A
* **
21955318 TAA TAA TATA TAA -AA TAA TTA TAA TATA TAA T-A TAA -AA GCA T-A
1 TAA TAA TA-A TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
*
21955361 TATA TAA AAA TAA TATA TAA TATA TAA TAA -ACA T-A TAA T-A TAA TAA
1 TA-A TAA TAA TAA TA-A TAA TA-A TAA TAA TA-A TAA TAA TAA TAA TAA
* * ** *
21955407 TAA TATA TAAA TAA TGA T-G TAA -AA TAA TAA TTCG TGAA AAA TAA TATA
1 TAA TA-A T-AA TAA TAA TAA TAA TAA TAA TAA -TAA T-AA TAA TAA TA-A
*
21955455 TAA GAAA TAA TAA TAA T-A TAAA TAA TATA TAA TAA
1 TAA -TAA TAA TAA TAA TAA T-AA TAA TA-A TAA TAA
21955490 AATCATTTTA
Statistics
Matches: 161, Mismatches: 28, Indels: 58
0.65 0.11 0.23
Matches are distributed among these distances:
2 20 0.12
3 99 0.61
4 40 0.25
5 2 0.01
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:21955373 original size:25 final size:25
Alignment explanation
Indices: 21955343--21955403 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
21955333 TAATTATAAT
21955343 ATATAATATAAAAGCATATATATAAA-
1 ATATAATATAAAA-CATATA-ATAAAC
* *
21955369 A-ATAATATATAATATATAATAAAC
1 ATATAATATAAAACATATAATAAAC
21955393 ATATAATATAA
1 ATATAATATAA
21955404 TAATAATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 5 0.17
24 6 0.20
25 18 0.60
26 1 0.03
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (25 bp):
ATATAATATAAAACATATAATAAAC
Found at i:21955375 original size:50 final size:46
Alignment explanation
Indices: 21955319--21955434 Score: 126
Period size: 50 Copynumber: 2.4 Consensus size: 46
21955309 AAAATGACTT
*
21955319 AATAATATATAAAATAATTATAATATATAATATAAAAGCATATATATAAA
1 AATAATATATAAAATAATTA-AACATATAATATAAAA--ATA-ATATAAA
* *
21955369 AATAATATATAATATATAA-TAAACATATAATATAATAATAATATATA
1 AATAATATATAA-A-ATAATTAAACATATAATATAAAAATAATATAAA
*
21955416 AATAATGATGTAAAATAAT
1 AATAAT-ATATAAAATAAT
21955435 AATTCGTGAA
Statistics
Matches: 58, Mismatches: 4, Indels: 11
0.79 0.05 0.15
Matches are distributed among these distances:
46 4 0.07
47 13 0.22
48 8 0.14
50 26 0.45
51 3 0.05
52 4 0.07
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (46 bp):
AATAATATATAAAATAATTAAACATATAATATAAAAATAATATAAA
Found at i:21955434 original size:30 final size:29
Alignment explanation
Indices: 21955362--21955437 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 29
21955352 AAAAGCATAT
21955362 ATATAAAAATAATATATAATATATAATAAAC
1 ATAT-AAAATAATA-ATAATATATAATAAAC
* **
21955393 ATATAATATAATAATAATATATAAATAATG
1 ATATAAAATAATAATAATATAT-AATAAAC
*
21955423 ATGTAAAATAATAAT
1 ATATAAAATAATAAT
21955438 TCGTGAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
29 9 0.23
30 26 0.67
31 4 0.10
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (29 bp):
ATATAAAATAATAATAATATATAATAAAC
Found at i:21955478 original size:9 final size:10
Alignment explanation
Indices: 21955446--21955489 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
21955436 ATTCGTGAAA
21955446 AATAATATAT
1 AATAATATAT
*
21955456 AAGAA-ATAAT
1 AATAATAT-AT
21955466 AATAATATA-
1 AATAATATAT
21955475 AATAATATAT
1 AATAATATAT
21955485 AATAA
1 AATAA
21955490 AATCATTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
9 11 0.38
10 16 0.55
11 2 0.07
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (10 bp):
AATAATATAT
Found at i:21955520 original size:18 final size:18
Alignment explanation
Indices: 21955276--21955420 Score: 95
Period size: 18 Copynumber: 7.9 Consensus size: 18
21955266 CTTTAATGAT
*
21955276 AATAATATAT-AGATAAA
1 AATAATATATAATATAAA
*
21955293 AAT-GTATAATAATATAAA
1 AATAATAT-ATAATATAAA
*
21955311 AATGACT-TAATAATATATAA
1 AAT-AATAT-ATAATATA-AA
21955331 AATAAT-TATAATATATAA
1 AATAATATATAATATA-AA
* * *
21955349 TATAAAAGCATATATATAAA
1 AATAATA-TATA-ATATAAA
*
21955369 AATAATATATAATAT-AT
1 AATAATATATAATATAAA
* *
21955386 AATAAACATATAATATAAT
1 AAT-AATATATAATATAAA
21955405 AATAATATATAA-ATAA
1 AATAATATATAATATAA
21955421 TGATGTAAAA
Statistics
Matches: 105, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
16 3 0.03
17 13 0.12
18 47 0.45
19 21 0.20
20 16 0.15
21 5 0.05
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (18 bp):
AATAATATATAATATAAA
Found at i:21957507 original size:210 final size:210
Alignment explanation
Indices: 21957047--21957605 Score: 715
Period size: 210 Copynumber: 2.7 Consensus size: 210
21957037 AAATCTGCTT
* * * * *
21957047 CTTCGATTTGTTCTCTGATAATACAGAGATGCCAAATTATCTTAGATTTACTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGAAAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * ** * *
21957112 GTGAAATCCAAATCAGCTATGTCTTCGATTTGTTCCTTG-T-AAGCACAATGATG-TCAA-A---
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCTGAA-TACAAAGA-GAT-AAGATCT
* * * * *
21957170 -TCATCTTGGATCTTGCATCAGTCTAATCGTCTAAAGGTCAGATCTGCTGTGTATCTGCTCTCCA
128 GTCATCTTGGATC-TGCATCAGTCTAAACATCTAAAGGTAAGATCTACTATGTATCTGCTCTCCA
** *
21957234 TTGAAGTGGAGATGCCAGA
192 TCAAAGTGGAAATGCCAGA
*
21957253 CTTCGATTTGTTCTCTGAAAATATAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGAAAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
21957318 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCTGAATACAAAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCTGAATACAAAGAGATAAGATCTGTC
* * *
21957383 ATCTTGGATCTGCTTCAG-CATAAACATCTGAAGGTAAGATCTACTATGTGTCTGC-CTTCCATC
131 ATCTTGGATCTGCATCAGTC-TAAACATCTAAAGGTAAGATCTACTATGTATCTGCTC-TCCATC
21957446 AAAGTGGAAATGCCAGA
194 AAAGTGGAAATGCCAGA
* * * *
21957463 CTTCGATTTGTTCTTTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCATAAACAC
1 CTTCGATTTGTTCTCTGAAAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
21957528 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCTGAATACAAAGAGATAAGATCTGTC
21957593 ATCTTGGATCTGC
131 ATCTTGGATCTGC
21957606 CTTGATGAAG
Statistics
Matches: 311, Mismatches: 32, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
206 95 0.31
207 9 0.03
208 2 0.01
209 2 0.01
210 191 0.61
211 12 0.04
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (210 bp):
CTTCGATTTGTTCTCTGAAAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCTGAATACAAAGAGATAAGATCTGTC
ATCTTGGATCTGCATCAGTCTAAACATCTAAAGGTAAGATCTACTATGTATCTGCTCTCCATCAA
AGTGGAAATGCCAGA
Found at i:21965756 original size:14 final size:14
Alignment explanation
Indices: 21965737--21965763 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
21965727 CTAGTTCAAC
21965737 TTTATTTAGAAAAT
1 TTTATTTAGAAAAT
21965751 TTTATTTAGAAAA
1 TTTATTTAGAAAA
21965764 AGAATATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (14 bp):
TTTATTTAGAAAAT
Found at i:21969443 original size:26 final size:25
Alignment explanation
Indices: 21969385--21969463 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
21969375 AAACAAAAGT
* * *
21969385 TTTAAAAAATACATGTATAATATAAA
1 TTTAAAATATA-ATATATAATAAAAA
* * * *
21969411 TAATAAAATGTGATATTTAATAATAAA
1 T-TTAAAATATAATATATAATAA-AAA
21969438 TTTAAAATATAATATATAATAAAAA
1 TTTAAAATATAATATATAATAAAAA
21969463 T
1 T
21969464 GTATTTATAA
Statistics
Matches: 40, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
25 4 0.10
26 26 0.65
27 10 0.25
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.37
Consensus pattern (25 bp):
TTTAAAATATAATATATAATAAAAA
Found at i:21969762 original size:19 final size:18
Alignment explanation
Indices: 21969740--21969857 Score: 60
Period size: 19 Copynumber: 6.0 Consensus size: 18
21969730 TAAAAATGTA
*
21969740 TAATAATATAAAAATGACT
1 TAATAATATAAAAAT-AAT
*
21969759 TAATAATATATAAATAAT
1 TAATAATATAAAAATAAT
* *
21969777 T-ATAATATATAATATAAAAG
1 TAATAATATA-AA-A-ATAAT
*
21969797 CAAT-ATATAAAAATATTAT
1 TAATAATATAAAAATA--AT
21969816 ATAATATATAATAAACATATAAT
1 -TAATA-AT-ATAAA-A-ATAAT
*
21969839 ATAATAATATATAAATAAT
1 -TAATAATATAAAAATAAT
21969858 GATGTAAAAT
Statistics
Matches: 77, Mismatches: 10, Indels: 24
0.69 0.09 0.22
Matches are distributed among these distances:
17 10 0.13
18 5 0.06
19 23 0.30
20 12 0.16
21 6 0.08
22 4 0.05
23 13 0.17
24 1 0.01
25 3 0.04
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.36
Consensus pattern (18 bp):
TAATAATATAAAAATAAT
Found at i:21969764 original size:22 final size:20
Alignment explanation
Indices: 21969711--21969795 Score: 77
Period size: 21 Copynumber: 4.0 Consensus size: 20
21969701 TAAAACCTTT
21969711 AATGATAATAATATATAGATAAA
1 AATGATAATAATA-AT--ATAAA
21969734 AATG-T-ATAATAATATAAA
1 AATGATAATAATAATATAAA
21969752 AATGACTTAATAAT-ATATAAA
1 AATGA--TAATAATAATATAAA
*
21969773 TAATTATAATATATAATATAAA
1 -AATGATAATA-ATAATATAAA
21969795 A
1 A
21969796 GCAATATATA
Statistics
Matches: 54, Mismatches: 1, Indels: 16
0.76 0.01 0.23
Matches are distributed among these distances:
18 9 0.17
20 7 0.13
21 17 0.31
22 17 0.31
23 4 0.07
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (20 bp):
AATGATAATAATAATATAAA
Found at i:21969787 original size:7 final size:7
Alignment explanation
Indices: 21969761--21969946 Score: 72
Period size: 7 Copynumber: 27.1 Consensus size: 7
21969751 AAATGACTTA
21969761 ATAATAT
1 ATAATAT
21969768 ATAAATAATT
1 AT-AAT-A-T
21969778 ATAATAT
1 ATAATAT
21969785 ATAATAT
1 ATAATAT
21969792 A-AA-A-
1 ATAATAT
**
21969796 GCAATAT
1 ATAATAT
*
21969803 ATAA-AA
1 ATAATAT
*
21969809 ATATTAT
1 ATAATAT
21969816 ATAATAT
1 ATAATAT
21969823 AT-A-AT
1 ATAATAT
*
21969828 A-AACAT
1 ATAATAT
21969834 ATAATAT
1 ATAATAT
21969841 AATAATAT
1 -ATAATAT
21969849 ATAA-AT
1 ATAATAT
* *
21969855 AATGATGT
1 -ATAATAT
*
21969863 AAAATA-
1 ATAATAT
*
21969869 ATAATTT
1 ATAATAT
* *
21969876 GTGAA-AA
1 AT-AATAT
21969883 ATAATAT
1 ATAATAT
*
21969890 ATAATAA
1 ATAATAT
21969897 ATAATA-
1 ATAATAT
*
21969903 AT-ATAA
1 ATAATAT
21969909 ATAATAT
1 ATAATAT
*
21969916 ATAATAAA
1 ATAAT-AT
* *
21969924 ATCATTTT
1 AT-AATAT
21969932 ATAATAT
1 ATAATAT
21969939 ATAATAT
1 ATAATAT
21969946 A
1 A
21969947 AAAATAAGGT
Statistics
Matches: 131, Mismatches: 28, Indels: 40
0.66 0.14 0.20
Matches are distributed among these distances:
5 10 0.08
6 23 0.18
7 70 0.53
8 19 0.15
9 6 0.05
10 3 0.02
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.37
Consensus pattern (7 bp):
ATAATAT
Found at i:21969789 original size:43 final size:43
Alignment explanation
Indices: 21969716--21969857 Score: 113
Period size: 43 Copynumber: 3.4 Consensus size: 43
21969706 CCTTTAATGA
* ** *
21969716 TAATAATATATAGATAAAAAT-GTATAATAATATAAAAATGACT
1 TAATAATATATAAATAATTATAATAT-ATAATATAAAAATGACT
21969759 TAATAATATATAAATAATTATAATATATAATAT-AAAA-G-C-
1 TAATAATATATAAATAATTATAATATATAATATAAAAATGACT
* * * *
21969798 -AAT-ATATAAAAATATTATATAATATATAATA-AACATAT-AAT
1 TAATAATATATAAATAAT-TATAATATATAATATAA-AAATGACT
21969839 ATAATAATATATAAATAAT
1 -TAATAATATATAAATAAT
21969858 GATGTAAAAT
Statistics
Matches: 79, Mismatches: 10, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
37 11 0.14
38 18 0.23
39 2 0.03
40 1 0.01
41 1 0.01
42 4 0.05
43 28 0.35
44 14 0.18
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (43 bp):
TAATAATATATAAATAATTATAATATATAATATAAAAATGACT
Found at i:21969803 original size:33 final size:33
Alignment explanation
Indices: 21969766--21969857 Score: 79
Period size: 33 Copynumber: 2.9 Consensus size: 33
21969756 ACTTAATAAT
*
21969766 ATATAAATAATTATAATATATAATATAA-AAGC
1 ATATAAATAATTATAATATATAATATAATAAAC
* *
21969798 AATATATAA-AAATATTATATA-ATATATAATAAAC
1 -ATATA-AATAATTATAATATATA-ATATAATAAAC
*
21969832 ATAT-AAT-ATAATAATATATAA-ATAAT
1 ATATAAATAATTATAATATATAATATAAT
21969858 GATGTAAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
30 5 0.10
31 11 0.23
32 2 0.04
33 25 0.52
34 5 0.10
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.36
Consensus pattern (33 bp):
ATATAAATAATTATAATATATAATATAATAAAC
Found at i:21969836 original size:31 final size:33
Alignment explanation
Indices: 21969778--21969856 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 33
21969768 ATAAATAATT
* *
21969778 ATAATATATAATATAAAAGCAATATATAA-A-A
1 ATAATATATAATATAAAAGAAACATATAATATA
* * *
21969809 ATATTATATAATATATAATAAACATATAATATA
1 ATAATATATAATATAAAAGAAACATATAATATA
21969842 ATAATATATAA-ATAA
1 ATAATATATAATATAA
21969857 TGATGTAAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
31 24 0.62
32 4 0.10
33 11 0.28
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (33 bp):
ATAATATATAATATAAAAGAAACATATAATATA
Found at i:21969937 original size:26 final size:26
Alignment explanation
Indices: 21969760--21969919 Score: 66
Period size: 26 Copynumber: 6.5 Consensus size: 26
21969750 AAAATGACTT
21969760 AATAAT-ATATAAATAAT-TATAATA
1 AATAATAATATAAATAATATATAATA
* *
21969784 TATAAT-ATA-AAAGCAATATATAA-A
1 AATAATAATATAAA-TAATATATAATA
21969808 AAT-AT--TAT--ATAATATATAATA
1 AATAATAATATAAATAATATATAATA
*
21969829 AACATATAATAT-AATAATATATAA-A
1 AATA-ATAATATAAATAATATATAATA
* * * *
21969854 TAATGATGTAAAAT-AATAATTTGTGAA-A
1 -AAT-A-ATAATATAAATAATATAT-AATA
21969882 AATAATATATAATAAATAATA-AT-ATA
1 AATAATA-AT-ATAAATAATATATAATA
21969908 AATAAT-ATATAA
1 AATAATAATATAA
21969920 TAAAATCATT
Statistics
Matches: 106, Mismatches: 14, Indels: 33
0.69 0.09 0.22
Matches are distributed among these distances:
20 9 0.08
21 4 0.04
22 2 0.02
23 11 0.10
24 16 0.15
25 12 0.11
26 22 0.21
27 21 0.20
28 9 0.08
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (26 bp):
AATAATAATATAAATAATATATAATA
Found at i:21969950 original size:67 final size:66
Alignment explanation
Indices: 21969816--21969953 Score: 156
Period size: 67 Copynumber: 2.1 Consensus size: 66
21969806 AAAATATTAT
* * *
21969816 ATAATATATAATAAACATATAATATAATAATATATAAATAATGATGTAAAATAATAATTTGTGAA
1 ATAATATATAATAAACATATAATATAATAATATATAAAAAATCATGTAAAATAATAA-TTATGAA
21969881 AA
65 AA
* * *
21969883 ATAATATATAATAAATA-ATAATATAAATAATATATAATAAAATCATTTTATAATATATAA-TAT
1 ATAATATATAATAAACATATAATAT-AATAATATATAA-AAAATCA-TGTAAAATA-ATAATTAT
21969946 -AAAA
62 GAAAA
21969950 ATAA
1 ATAA
21969954 GGTTAAAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
66 7 0.11
67 36 0.59
68 7 0.11
69 7 0.11
70 4 0.07
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (66 bp):
ATAATATATAATAAACATATAATATAATAATATATAAAAAATCATGTAAAATAATAATTATGAAA
A
Found at i:21988926 original size:54 final size:54
Alignment explanation
Indices: 21988862--21988969 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
21988852 GGTTCTAAAG
* * * *
21988862 AAGACCATATCGTGTAAGATCATAACTGGTGGGTTATGGCATCATATGGAAAAA
1 AAGACCATATCATGTAAGACCATAACTAGTAGGTTATGGCATCATATGGAAAAA
* *
21988916 AAGACTATATCATGTAAGACCGTAACTAGTAGGTTATGGCATCATATGGAAAAA
1 AAGACCATATCATGTAAGACCATAACTAGTAGGTTATGGCATCATATGGAAAAA
21988970 TTTTAAAAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (54 bp):
AAGACCATATCATGTAAGACCATAACTAGTAGGTTATGGCATCATATGGAAAAA
Found at i:22001276 original size:32 final size:32
Alignment explanation
Indices: 22001231--22001296 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
22001221 CTCACTACTA
**
22001231 AAGTAGCTTGAGTCTTCGAAGGAGCTTGCCGG
1 AAGTAGCCCGAGTCTTCGAAGGAGCTTGCCGG
*
22001263 AAGTAGCCCGAGTCTTCGAAGGAGCTTGTCGG
1 AAGTAGCCCGAGTCTTCGAAGGAGCTTGCCGG
22001295 AA
1 AA
22001297 TGTACTCTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.23
Consensus pattern (32 bp):
AAGTAGCCCGAGTCTTCGAAGGAGCTTGCCGG
Found at i:22002165 original size:61 final size:61
Alignment explanation
Indices: 22002070--22002191 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
22002060 AGTAAAGCAC
22002070 TCATTCATAATTTGGAAGAAGGTACCATGATCCTTACATCCAGGTATTTGAGATGCAAGTA
1 TCATTCATAATTTGGAAGAAGGTACCATGATCCTTACATCCAGGTATTTGAGATGCAAGTA
22002131 TCATTCATAATTTGGAAGAAGGTACCATGATCCTTACATCCAGGTATTTGAGATGCAAGTA
1 TCATTCATAATTTGGAAGAAGGTACCATGATCCTTACATCCAGGTATTTGAGATGCAAGTA
22002192 AACTCTGACT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (61 bp):
TCATTCATAATTTGGAAGAAGGTACCATGATCCTTACATCCAGGTATTTGAGATGCAAGTA
Found at i:22017633 original size:30 final size:30
Alignment explanation
Indices: 22017599--22017666 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
22017589 AAAATGTTGT
22017599 GGGAGAAATAATAAAATACTAGTTGATGGG
1 GGGAGAAATAATAAAATACTAGTTGATGGG
22017629 GGGAGAAATAATAAAATACTAGTTGATGGG
1 GGGAGAAATAATAAAATACTAGTTGATGGG
22017659 GGGAGAAA
1 GGGAGAAA
22017667 CAAAAGTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.44, C:0.03, G:0.32, T:0.21
Consensus pattern (30 bp):
GGGAGAAATAATAAAATACTAGTTGATGGG
Found at i:22018874 original size:48 final size:48
Alignment explanation
Indices: 22018819--22019339 Score: 898
Period size: 48 Copynumber: 10.9 Consensus size: 48
22018809 TATATATGTG
* * * *
22018819 TGTGGTAAAGCCGAATAGCTAATGTAAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
22018867 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
22018915 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
22018963 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
22019011 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
22019059 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
22019107 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGCATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
22019155 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
22019203 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
22019251 TGTGGTAAAGCCGCATGGCTAGTGTGAAATATGTGTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
22019299 TGTGGTTAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
22019340 GTGTGTATAC
Statistics
Matches: 455, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 455 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:22019534 original size:37 final size:37
Alignment explanation
Indices: 22019480--22019619 Score: 217
Period size: 37 Copynumber: 3.8 Consensus size: 37
22019470 GGAAATATAT
22019480 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
22019517 TCTGGGTAAGACTCGATGACTACGTCTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
22019554 TCCGGGTGAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22019591 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
22019620 GGACTATTCG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 91 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:22021016 original size:23 final size:23
Alignment explanation
Indices: 22020984--22021056 Score: 61
Period size: 23 Copynumber: 3.4 Consensus size: 23
22020974 CTGGTGTTAT
22020984 ATTCGGGCTAAGTCCCGAAGAGC
1 ATTCGGGCTAAGTCCCGAAGAGC
* *
22021007 ATTCGTGCT-AGT---GATATA-C
1 ATTCGGGCTAAGTCCCGA-AGAGC
22021026 --TCGGGCTAAGTCCCGAAGAGC
1 ATTCGGGCTAAGTCCCGAAGAGC
*
22021047 ATTCGTGCTA
1 ATTCGGGCTA
22021057 GTGATATACC
Statistics
Matches: 37, Mismatches: 5, Indels: 16
0.64 0.09 0.28
Matches are distributed among these distances:
17 6 0.16
18 3 0.08
19 3 0.08
20 4 0.11
21 3 0.08
22 3 0.08
23 15 0.41
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (23 bp):
ATTCGGGCTAAGTCCCGAAGAGC
Found at i:22021174 original size:40 final size:40
Alignment explanation
Indices: 22020905--22021179 Score: 338
Period size: 40 Copynumber: 6.8 Consensus size: 40
22020895 GTTATATAGT
22020905 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATAGC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT--C
* *
22020947 CGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATT
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATC
* *
22020987 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA-C
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATC
* *
22021026 TCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA-C
1 -CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATC
* * * *
22021066 CTGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTAGATC
1 C-GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATC
* * * *
22021107 AGGGTTAAGTCTCGAAGAGCATTCATGCTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATC
* * * *
22021147 CAGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
22021180 ATGTGTATTC
Statistics
Matches: 208, Mismatches: 22, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
39 1 0.00
40 168 0.81
41 1 0.00
42 38 0.18
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATC
Found at i:22023876 original size:48 final size:48
Alignment explanation
Indices: 22023814--22026154 Score: 4024
Period size: 48 Copynumber: 48.9 Consensus size: 48
22023804 TATATATGTG
* * *
22023814 TGTGGTAAAGCCGAATAGTTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22023862 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22023910 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22023958 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22024006 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
22024054 TGTGGTAAAGCCGAATGGCTAATGTG-AAT-T-T-TGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22024098 TGTGGTAAAGCTGAATGGCTAATGTAAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
22024146 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22024194 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGGTATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22024242 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22024290 TGTGGTAAAGCCGAATGGCTACTGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22024338 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTAAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22024386 TGTGGTAAAGCCGACTGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22024434 TGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22024482 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGAATGAGATTTGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22024530 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22024578 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22024626 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22024674 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22024722 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22024770 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22024818 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGCATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22024866 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22024914 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22024962 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22025010 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22025058 TGTGGTAAAGCCGACTGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22025106 TGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATGAGATATATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22025154 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGGTATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22025202 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22025250 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22025298 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
22025346 TGTGGTAAAGCCGACTGTCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22025394 TGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATGAGATATATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
22025442 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
22025490 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22025538 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22025586 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22025634 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22025682 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22025730 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22025778 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22025826 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22025874 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22025922 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
22025970 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22026018 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
22026066 TGTGGTAAAGCCGCATGGCTAGTGTGAAATATGTGTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
22026114 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
22026155 GTGTGTATAT
Statistics
Matches: 2213, Mismatches: 76, Indels: 8
0.96 0.03 0.00
Matches are distributed among these distances:
44 37 0.02
45 4 0.00
46 2 0.00
47 4 0.00
48 2166 0.98
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:22026346 original size:37 final size:37
Alignment explanation
Indices: 22026295--22026434 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
22026285 GGAAATATAT
*
22026295 TCCGGGTAAAACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
22026332 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
22026369 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
22026406 TCCGGGTAAGACCCGATAACTATGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
22026435 GGACTATTCG
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Done.