Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 72 of 311
Found at i:22386787 original size:34 final size:34
Alignment explanation
Indices: 22386748--22386817 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
22386738 CCACTAAGAA
22386748 AAATTCAATTTGGGTTATAGTAGACCGATTAACG
1 AAATTCAATTTGGGTTATAGTAGACCGATTAACG
22386782 AAATTCAATTTGGGTTATAGTAGACCGATTAACG
1 AAATTCAATTTGGGTTATAGTAGACCGATTAACG
22386816 AA
1 AA
22386818 GTCAGCACAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (34 bp):
AAATTCAATTTGGGTTATAGTAGACCGATTAACG
Found at i:22389059 original size:18 final size:19
Alignment explanation
Indices: 22389027--22389064 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
22389017 ATGAGGTACT
22389027 CTGTGTACCGCTACTATTA
1 CTGTGTACCGCTACTATTA
*
22389046 CTGT-TACCGTTACTATTA
1 CTGTGTACCGCTACTATTA
22389064 C
1 C
22389065 CGATACGGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.39
Consensus pattern (19 bp):
CTGTGTACCGCTACTATTA
Found at i:22396753 original size:25 final size:25
Alignment explanation
Indices: 22396725--22396774 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
22396715 ATCTATCGAC
22396725 AACAACCCAGATTGCATCTTTCTTA
1 AACAACCCAGATTGCATCTTTCTTA
*
22396750 AACAACCCAGTTTGCATCTTTCTTA
1 AACAACCCAGATTGCATCTTTCTTA
22396775 CTCGATGACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (25 bp):
AACAACCCAGATTGCATCTTTCTTA
Found at i:22402409 original size:9 final size:8
Alignment explanation
Indices: 22402378--22402411 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
22402368 AGTCCCTAAT
22402378 TCACAAAA
1 TCACAAAA
22402386 TCACAAAA
1 TCACAAAA
22402394 TCACAAAA
1 TCACAAAA
22402402 TACACAAAA
1 T-CACAAAA
22402411 T
1 T
22402412 TTCTTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.62, C:0.24, G:0.00, T:0.15
Consensus pattern (8 bp):
TCACAAAA
Found at i:22405279 original size:5 final size:5
Alignment explanation
Indices: 22405269--22405322 Score: 58
Period size: 5 Copynumber: 11.0 Consensus size: 5
22405259 TCATCCTATA
* * *
22405269 TTTCT TTTCT TTTCT TTTCT TTT-T TTT-T TATCT TTTCT TGTCCT CTTCT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT T-TTCT TTTCT
22405318 TTTCT
1 TTTCT
22405323 ATCATATTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
4 7 0.17
5 31 0.76
6 3 0.07
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTCT
Found at i:22405320 original size:23 final size:23
Alignment explanation
Indices: 22405276--22405320 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
22405266 ATATTTCTTT
* * * *
22405276 TCTTTTCTTTTCTTTTTTTTTTA
1 TCTTTTCTTGTCCTCTTCTTTTA
22405299 TCTTTTCTTGTCCTCTTCTTTT
1 TCTTTTCTTGTCCTCTTCTTTT
22405321 CTATCATATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (23 bp):
TCTTTTCTTGTCCTCTTCTTTTA
Found at i:22406492 original size:21 final size:21
Alignment explanation
Indices: 22406460--22406514 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
22406450 CTGATGAGCA
*
22406460 GTTTATCTACAACGACGAGT-
1 GTTTATCCACAACGACGAGTG
*
22406480 GTTTCATCCACAACGATGAGTG
1 GTTT-ATCCACAACGACGAGTG
22406502 GTTTATCCACAAC
1 GTTTATCCACAAC
22406515 ATGGTGTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
20 4 0.13
21 23 0.74
22 4 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (21 bp):
GTTTATCCACAACGACGAGTG
Found at i:22410957 original size:40 final size:41
Alignment explanation
Indices: 22410857--22411001 Score: 193
Period size: 41 Copynumber: 3.6 Consensus size: 41
22410847 AGTTATAGCG
* *
22410857 AAAACGCCACAAAAGGTCAAGCATTAACTGCGTTTATGATA
1 AAAACGCCACAAAAGGTCAAGCATTAGCGGCGTTTATGATA
* *
22410898 AAAACGCCGCAAAATGTCAAGCATTAGCGGCGTTTATGAT-
1 AAAACGCCACAAAAGGTCAAGCATTAGCGGCGTTTATGATA
* * *
22410938 AAAACTCCACAAAAGGTCAAGCATTAGGGGCGTTTATGGTA
1 AAAACGCCACAAAAGGTCAAGCATTAGCGGCGTTTATGATA
* * *
22410979 AAAACACCGCAAAAGGCCAAGCA
1 AAAACGCCACAAAAGGTCAAGCA
22411002 GTAGTGGCCG
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 35 0.38
41 56 0.62
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (41 bp):
AAAACGCCACAAAAGGTCAAGCATTAGCGGCGTTTATGATA
Found at i:22411046 original size:7 final size:7
Alignment explanation
Indices: 22411034--22411122 Score: 56
Period size: 7 Copynumber: 12.6 Consensus size: 7
22411024 GTAATTTTAT
*
22411034 TTTAGGG
1 TTTAAGG
22411041 TTT-AGG
1 TTTAAGG
*
22411047 TTTTAAGA
1 -TTTAAGG
*
22411055 TTTAATG
1 TTTAAGG
22411062 TTTAAGG
1 TTTAAGG
22411069 TTTAAGG
1 TTTAAGG
* *
22411076 TCTATGG
1 TTTAAGG
*
22411083 TTTATGG
1 TTTAAGG
*
22411090 TTTTAGGG
1 -TTTAAGG
22411098 TTTATA-G
1 TTTA-AGG
*
22411105 TTTATGG
1 TTTAAGG
*
22411112 TTTAATG
1 TTTAAGG
22411119 TTTA
1 TTTA
22411123 GTATTTTAGA
Statistics
Matches: 64, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
6 2 0.03
7 54 0.84
8 8 0.12
ACGTcount: A:0.22, C:0.01, G:0.25, T:0.52
Consensus pattern (7 bp):
TTTAAGG
Found at i:22411107 original size:22 final size:22
Alignment explanation
Indices: 22411040--22411122 Score: 75
Period size: 21 Copynumber: 3.9 Consensus size: 22
22411030 TTATTTTAGG
*
22411040 GTTTA-GGTTTTAAGATTTA-A
1 GTTTATGGTTTTAAGGTTTATA
* * *
22411060 TGTTTAAGG-TTTAAGGTCTATG
1 -GTTTATGGTTTTAAGGTTTATA
*
22411082 GTTTATGGTTTTAGGGTTTATA
1 GTTTATGGTTTTAAGGTTTATA
*
22411104 GTTTATGG-TTTAATGTTTA
1 GTTTATGGTTTTAAGGTTTA
22411123 GTATTTTAGA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
21 30 0.60
22 20 0.40
ACGTcount: A:0.23, C:0.01, G:0.24, T:0.52
Consensus pattern (22 bp):
GTTTATGGTTTTAAGGTTTATA
Found at i:22411136 original size:21 final size:23
Alignment explanation
Indices: 22411112--22411163 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 23
22411102 TAGTTTATGG
22411112 TTTAAT-GTTTAGTATTTT-AGA
1 TTTAATGGTTTAGTATTTTAAGA
*
22411133 TTT-ATGGTTTAGTGTTTTAAGA
1 TTTAATGGTTTAGTATTTTAAGA
22411155 TTT-ATGGTT
1 TTTAATGGTT
22411164 AGGGTCTTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 2 0.07
21 14 0.50
22 12 0.43
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (23 bp):
TTTAATGGTTTAGTATTTTAAGA
Found at i:22411158 original size:28 final size:28
Alignment explanation
Indices: 22411078--22411158 Score: 69
Period size: 28 Copynumber: 2.8 Consensus size: 28
22411068 GTTTAAGGTC
* * *
22411078 TATGGTTTATGGTTTTAGGGTTTATAGTT
1 TATGGTTTAT-GTTTTAAGATTTAGAGTT
22411107 TATGGTTTAATG-TTT-AGTATTTTAGA-TT
1 TATGGTTT-ATGTTTTAAG-A-TTTAGAGTT
22411135 TATGGTTTAGTGTTTTAAGATTTA
1 TATGGTTTA-TGTTTTAAGATTTA
22411159 TGGTTAGGGT
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
27 2 0.05
28 19 0.44
29 18 0.42
30 4 0.09
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (28 bp):
TATGGTTTATGTTTTAAGATTTAGAGTT
Found at i:22411165 original size:21 final size:21
Alignment explanation
Indices: 22411118--22411163 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
22411108 ATGGTTTAAT
22411118 GTTTAGTATTTTAGATTTATG
1 GTTTAGTATTTTAGATTTATG
*
22411139 GTTTAGTGTTTTAAGATTTATG
1 GTTTAGTATTTT-AGATTTATG
22411161 GTT
1 GTT
22411164 AGGGTCTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.57
Consensus pattern (21 bp):
GTTTAGTATTTTAGATTTATG
Found at i:22411380 original size:14 final size:14
Alignment explanation
Indices: 22411361--22411416 Score: 58
Period size: 14 Copynumber: 4.0 Consensus size: 14
22411351 GAAGTGTATA
22411361 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
* **
22411375 GTTTAGGGTATATT
1 GTTTAGGGTTTAAG
* *
22411389 ATTTTGGGTTTAAG
1 GTTTAGGGTTTAAG
*
22411403 GTCTAGGGTTTAAG
1 GTTTAGGGTTTAAG
22411417 CTTCAAGGTT
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.21, C:0.02, G:0.32, T:0.45
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:22412138 original size:240 final size:237
Alignment explanation
Indices: 22411726--22412166 Score: 557
Period size: 240 Copynumber: 1.8 Consensus size: 237
22411716 GGCACTAGGC
* * **
22411726 GAAAAACACCACAATAGATCGAGTATTAGCGGCGCTTGGTTAAAAAAAGCCCACGAAACAATTTA
1 GAAAAACACCACAATAGATCGAGAATTAGCGGCGCTAGGTTAAAAAAAGCCCAAAAAACAATTTA
**
22411791 CTTTAAAAAAAACTGCACCGTTTTAAGTTGCATCTCTAGTGGCTTTAACGGCGCCTTTTAAAAAA
66 CTTTAAAAAAAACTGCACCGTTCAAAGTTGCATCTCTAGTGGCTTTAACGGCGCCTTTTAAAAAA
* * *
22411856 AGCCGCAAAAGATCGACCTTCAGTGGCACTTTTGAGAAAACGCCACAAAAAAACATTTTACTTTA
131 AGCCGCAAAAGATAGACCTTCAGTGGCACTTTTGAAAAAACGCCAC--AAAAACATGTTACTTTA
22411921 ATTAAAACGACATTAGTTTAGGTAGGGAATTAGCGGCGCTACAT
194 ATTAAAACGACATTAGTTTAGGTAGGGAATTAGCGGCGCTACAT
** * *
22411965 GAAAAACACCGTAATAGATCGAGAATTAGCGGTGCTAGG-TAGAAAAACA-CCGCAAAAAATAAT
1 GAAAAACACCACAATAGATCGAGAATTAGCGGCGCTAGGTTA-AAAAA-AGCC-CAAAAAACAAT
** * * * * *
22412028 TTACTTTAAGTAAAAC-GACGCCGTTCAAATTTGCATCTTTAGTGGCTTTAGCGGTG-CTTTATA
63 TTACTTTAAAAAAAACTG-CACCGTTCAAAGTTGCATCTCTAGTGGCTTTAACGGCGCCTTT-TA
* * * * * *
22412091 AAAAACGCCGCAATAGATAGACCTTTAGTGGCGCTTTTTAAAAAACGCCACAAAAACATGTTAGT
126 AAAAAAGCCGCAAAAGATAGACCTTCAGTGGCACTTTTGAAAAAACGCCACAAAAACATGTTACT
22412156 TTAATTAAAAC
191 TTAATTAAAAC
22412167 ATCGCCGTTT
Statistics
Matches: 171, Mismatches: 26, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
238 25 0.15
239 46 0.27
240 100 0.58
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.26
Consensus pattern (237 bp):
GAAAAACACCACAATAGATCGAGAATTAGCGGCGCTAGGTTAAAAAAAGCCCAAAAAACAATTTA
CTTTAAAAAAAACTGCACCGTTCAAAGTTGCATCTCTAGTGGCTTTAACGGCGCCTTTTAAAAAA
AGCCGCAAAAGATAGACCTTCAGTGGCACTTTTGAAAAAACGCCACAAAAACATGTTACTTTAAT
TAAAACGACATTAGTTTAGGTAGGGAATTAGCGGCGCTACAT
Found at i:22412471 original size:19 final size:19
Alignment explanation
Indices: 22412427--22412473 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
22412417 CCCCTAACAC
*
22412427 ATTTTCCCCAATTCTCTAA
1 ATTTTCCCCAATTCCCTAA
22412446 A-TTTCCCCTAA-TCCCTAA
1 ATTTTCCCC-AATTCCCTAA
22412464 ATTTTCCCCA
1 ATTTTCCCCA
22412474 TATCAAAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.26, C:0.36, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTTTCCCCAATTCCCTAA
Found at i:22414383 original size:9 final size:9
Alignment explanation
Indices: 22414369--22414547 Score: 119
Period size: 9 Copynumber: 19.9 Consensus size: 9
22414359 TTCTTTAAAA
22414369 TTACATAAC
1 TTACATAAC
*
22414378 TTACATACC
1 TTACATAAC
22414387 TTACATAA-
1 TTACATAAC
* * *
22414395 ATATATATC
1 TTACATAAC
*
22414404 ATATCATAAC
1 TTA-CATAAC
*
22414414 TTACATACC
1 TTACATAAC
*
22414423 TCACATAAC
1 TTACATAAC
*
22414432 ATACATAAC
1 TTACATAAC
22414441 TTACATAAC
1 TTACATAAC
*
22414450 TTATATAA-
1 TTACATAAC
* * *
22414458 ATATATATC
1 TTACATAAC
*
22414467 ATATCATAAC
1 TTA-CATAAC
***
22414477 TTACATTTT
1 TTACATAAC
*
22414486 TTACATAAT
1 TTACATAAC
22414495 TTACATAAC
1 TTACATAAC
*
22414504 TTACATAAT
1 TTACATAAC
*
22414513 TTTCATAAC
1 TTACATAAC
***
22414522 TTACATTTT
1 TTACATAAC
22414531 TTACATAAC
1 TTACATAAC
*
22414540 TAACATAA
1 TTACATAA
22414548 ATAAATATCG
Statistics
Matches: 129, Mismatches: 37, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
8 11 0.09
9 106 0.82
10 12 0.09
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (9 bp):
TTACATAAC
Found at i:22414413 original size:36 final size:36
Alignment explanation
Indices: 22414372--22414482 Score: 132
Period size: 36 Copynumber: 3.3 Consensus size: 36
22414362 TTTAAAATTA
22414372 CATAACTTACATACCTTACATAAATATATATCATAT
1 CATAACTTACATACCTTACATAAATATATATCATAT
*
22414408 CATAACTTACATACC-T-C----ACATA-A-CATA-
1 CATAACTTACATACCTTACATAAATATATATCATAT
* *
22414435 CATAACTTACATAACTTATATAAATATATATCATAT
1 CATAACTTACATACCTTACATAAATATATATCATAT
22414471 CATAACTTACAT
1 CATAACTTACAT
22414483 TTTTTACATA
Statistics
Matches: 62, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
27 14 0.23
28 5 0.08
29 1 0.02
30 4 0.06
33 4 0.06
34 2 0.03
35 5 0.08
36 27 0.44
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (36 bp):
CATAACTTACATACCTTACATAAATATATATCATAT
Found at i:22414469 original size:63 final size:63
Alignment explanation
Indices: 22414370--22414520 Score: 212
Period size: 63 Copynumber: 2.4 Consensus size: 63
22414360 TCTTTAAAAT
*
22414370 TACATAACTTACATACCTTACATAAATATATATCATATCATAACTTACATACCTCACATAACA
1 TACATAACTTACATAACTTACATAAATATATATCATATCATAACTTACATACCTCACATAACA
* *** * **
22414433 TACATAACTTACATAACTTATATAAATATATATCATATCATAACTTACATTTTTTACATAATT
1 TACATAACTTACATAACTTACATAAATATATATCATATCATAACTTACATACCTCACATAACA
* *
22414496 TACATAACTTACATAATTTTCATAA
1 TACATAACTTACATAACTTACATAA
22414521 CTTACATTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 77 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (63 bp):
TACATAACTTACATAACTTACATAAATATATATCATATCATAACTTACATACCTCACATAACA
Found at i:22414490 original size:45 final size:46
Alignment explanation
Indices: 22414441--22414556 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 46
22414431 CATACATAAC
*
22414441 TTACATAACTTATATAAATATATATCA-TATCATAACTTACATTTT
1 TTACATAACTTACATAAATATATATCATTATCATAACTTACATTTT
* * * * *
22414486 TTACATAATTTACATAACT-TACATAATTTTCATAACTTACATTTT
1 TTACATAACTTACATAAATATATATCATTATCATAACTTACATTTT
* *
22414531 TTACATAACTAACATAAATAAATATC
1 TTACATAACTTACATAAATATATATC
22414557 GTATTGTCAA
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
44 5 0.09
45 49 0.86
46 3 0.05
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (46 bp):
TTACATAACTTACATAAATATATATCATTATCATAACTTACATTTT
Found at i:22420356 original size:3 final size:3
Alignment explanation
Indices: 22420342--22420386 Score: 63
Period size: 3 Copynumber: 14.7 Consensus size: 3
22420332 TTCTTAGATT
* *
22420342 TTA TTAA TTA TTA TTA TTG TTA TTA TTG TTA TTA TTA TTA TTA TT
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
22420387 TCTATTTGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22421252 original size:17 final size:18
Alignment explanation
Indices: 22421232--22421265 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22421222 TAAAAGAGTT
*
22421232 AATTA-GGATTAAATTGG
1 AATTAGGGAATAAATTGG
22421249 AATTAGGGAATAAATTG
1 AATTAGGGAATAAATTG
22421266 AATAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (18 bp):
AATTAGGGAATAAATTGG
Found at i:22421819 original size:27 final size:27
Alignment explanation
Indices: 22421779--22421875 Score: 106
Period size: 27 Copynumber: 3.5 Consensus size: 27
22421769 AATGCCTTAT
* *
22421779 TGGTGTGTTAGGGAGGATATAATATAC
1 TGGTGTGTTTGGGAGGATATATTATAC
*
22421806 TGGTGTGTTTGGGAGGCTATATTATAC
1 TGGTGTGTTTGGGAGGATATATTATAC
* *
22421833 TAGTGTGTTAT-GGAGGATTTATATTATTC
1 TGGTGTGTT-TGGGAGGA--TATATTATAC
22421862 TGGGTGTGTTTGGG
1 T-GGTGTGTTTGGG
22421876 TTGGATATTC
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
27 37 0.64
28 1 0.02
29 11 0.19
30 9 0.16
ACGTcount: A:0.21, C:0.04, G:0.34, T:0.41
Consensus pattern (27 bp):
TGGTGTGTTTGGGAGGATATATTATAC
Found at i:22423029 original size:38 final size:32
Alignment explanation
Indices: 22422978--22423060 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 32
22422968 ATTTTCTTGC
22422978 TGTAAGAATATTTTTAACATTGTAACTTTAAACATTAT
1 TGTAAGAATATTTTTAA-A-T-T-A-TTT-AACATTAT
*
22423016 TGTAAGAATA-TTTTGAATTATTTAACATTAT
1 TGTAAGAATATTTTTAAATTATTTAACATTAT
22423047 TGTAAGAATATTTT
1 TGTAAGAATATTTT
22423061 GAATTATACT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
31 18 0.42
32 6 0.14
33 1 0.02
34 1 0.02
35 1 0.02
36 1 0.02
37 5 0.12
38 10 0.23
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.47
Consensus pattern (32 bp):
TGTAAGAATATTTTTAAATTATTTAACATTAT
Found at i:22423043 original size:31 final size:31
Alignment explanation
Indices: 22423008--22423067 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
22422998 TGTAACTTTA
22423008 AACATTATTGTAAGAATATTTTGAATTATTT
1 AACATTATTGTAAGAATATTTTGAATTATTT
22423039 AACATTATTGTAAGAATATTTTGAATTAT
1 AACATTATTGTAAGAATATTTTGAATTAT
22423068 ACTTCAGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (31 bp):
AACATTATTGTAAGAATATTTTGAATTATTT
Found at i:22424464 original size:73 final size:72
Alignment explanation
Indices: 22424334--22424537 Score: 202
Period size: 73 Copynumber: 2.9 Consensus size: 72
22424324 TGACATTTAC
* * * * *
22424334 AAAAGGTTGGGATAGA-CTCGTCT-AAGACAACCTTAAAAAGGTTGGGATAGACCCGTCT-AAGA
1 AAAAGGTTGGGATAAACCTTGTCTAAAGACAACCTTAAAAAGATTAGAATAGACCCGTCTAAAG-
22424396 CAACCTTA
65 CAACCTTA
* *
22424404 AAAAGGTTGGGATAAACCTTGTCTAAAG-TAACCTTTAAAAAAGATTAGAATAGACTCGTCTAAA
1 AAAAGGTTGGGATAAACCTTGTCTAAAGACAACC-TT-AAAAAGATTAGAATAGACCCGTCTAAA
22424468 GCAACCTTA
64 GCAACCTTA
* * * * * * * * *
22424477 AAAAAGTTGAGATAAGCCTTGTCT-AAGGCATCCTTAAAAAGGTTGGGATAGACACGTCTAA
1 AAAAGGTTGGGATAAACCTTGTCTAAAGACAACCTTAAAAAGATTAGAATAGACCCGTCTAA
22424538 GGTAATTTTT
Statistics
Matches: 112, Mismatches: 16, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
70 15 0.13
71 32 0.29
72 10 0.09
73 52 0.46
74 3 0.03
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (72 bp):
AAAAGGTTGGGATAAACCTTGTCTAAAGACAACCTTAAAAAGATTAGAATAGACCCGTCTAAAGC
AACCTTA
Found at i:22424539 original size:35 final size:35
Alignment explanation
Indices: 22424334--22424539 Score: 223
Period size: 35 Copynumber: 5.8 Consensus size: 35
22424324 TGACATTTAC
*
22424334 AAAAGGTTGGGATAGACTCGTCTAAGACAACCTTA
1 AAAAGGTTGGGATAGACTCGTCTAAGGCAACCTTA
* *
22424369 AAAAGGTTGGGATAGACCCGTCTAAGACAACCTTA
1 AAAAGGTTGGGATAGACTCGTCTAAGGCAACCTTA
* * * *
22424404 AAAAGGTTGGGATAAACCTTGTCTAAAGTAACCTTTAA
1 AAAAGGTTGGGATAGA-CTCGTCTAAGGCAACC-TT-A
* * * *
22424442 AAAAGATTAGAATAGACTCGTCTAAAGCAACCTTA
1 AAAAGGTTGGGATAGACTCGTCTAAGGCAACCTTA
* * * * *
22424477 AAAAAGTTGAGATAAGCCTTGTCTAAGGCATCCTTA
1 AAAAGGTTGGGAT-AGACTCGTCTAAGGCAACCTTA
*
22424513 AAAAGGTTGGGATAGACACGTCTAAGG
1 AAAAGGTTGGGATAGACTCGTCTAAGG
22424540 TAATTTTTTT
Statistics
Matches: 140, Mismatches: 27, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
35 69 0.49
36 42 0.30
37 16 0.11
38 13 0.09
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (35 bp):
AAAAGGTTGGGATAGACTCGTCTAAGGCAACCTTA
Found at i:22427416 original size:2 final size:2
Alignment explanation
Indices: 22427409--22427445 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
22427399 TGATCACATA
22427409 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22427446 AGTTGAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22428164 original size:16 final size:17
Alignment explanation
Indices: 22428111--22428165 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 17
22428101 AAGACATTGT
22428111 TAAAATAAT-T-GAATA
1 TAAAATAATATGGAATA
22428126 TTAAAATAATATGGAATA
1 -TAAAATAATATGGAATA
*
22428144 -AAAAAAATAT-GAATTA
1 TAAAATAATATGGAA-TA
22428160 TAAAAT
1 TAAAAT
22428166 TAACTTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
15 3 0.09
16 20 0.61
17 5 0.15
18 5 0.15
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (17 bp):
TAAAATAATATGGAATA
Found at i:22435371 original size:44 final size:44
Alignment explanation
Indices: 22435308--22435391 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
22435298 GTGCCAATGT
* *
22435308 ATATATATAATCAAAGCTATCTCAGTCTCGCATACTAAGTGCAA
1 ATATATATAATCAAAGCTATCTCAATCTCGCACACTAAGTGCAA
* *
22435352 ATATATGTAA-CATAAGCTATCTCAATTTCGCACACTAAGT
1 ATATATATAATCA-AAGCTATCTCAATCTCGCACACTAAGT
22435392 ACCCAATTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (44 bp):
ATATATATAATCAAAGCTATCTCAATCTCGCACACTAAGTGCAA
Found at i:22437081 original size:23 final size:22
Alignment explanation
Indices: 22437048--22437096 Score: 80
Period size: 23 Copynumber: 2.2 Consensus size: 22
22437038 TTTTAAAAAG
*
22437048 AAATTGAAATGAAATGAAATTA
1 AAATTGAAATGAAATGAAAATA
22437070 AAATTGGAAATGAAATGAAAATA
1 AAATT-GAAATGAAATGAAAATA
22437093 AAAT
1 AAAT
22437097 GTAATTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 5 0.20
23 20 0.80
ACGTcount: A:0.61, C:0.00, G:0.14, T:0.24
Consensus pattern (22 bp):
AAATTGAAATGAAATGAAAATA
Found at i:22437242 original size:16 final size:16
Alignment explanation
Indices: 22437223--22437264 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
22437213 ATTTAAAAAG
22437223 AAATTGAAATAAAATA
1 AAATTGAAATAAAATA
*
22437239 AAATTGAAATTGAAATA
1 AAATTGAAA-TAAAATA
22437256 AAA-TGAAAT
1 AAATTGAAAT
22437265 TCAAATTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 1 0.04
16 14 0.58
17 9 0.38
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (16 bp):
AAATTGAAATAAAATA
Found at i:22437248 original size:6 final size:6
Alignment explanation
Indices: 22437222--22437291 Score: 53
Period size: 6 Copynumber: 12.7 Consensus size: 6
22437212 TATTTAAAAA
* * *
22437222 GAAATT GAAA-T -AAAAT AAAATT GAAATT GAAA-T -AAAAT GAAATT
1 GAAATT GAAATT GAAATT GAAATT GAAATT GAAATT GAAATT GAAATT
* *
22437266 CAAATT G-AATA GAAATT GAAA-T GAAA
1 GAAATT GAAATT GAAATT GAAATT GAAA
22437292 ATATAATTAA
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
4 6 0.12
5 13 0.25
6 33 0.63
ACGTcount: A:0.60, C:0.01, G:0.13, T:0.26
Consensus pattern (6 bp):
GAAATT
Found at i:22437248 original size:22 final size:22
Alignment explanation
Indices: 22437222--22437274 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
22437212 TATTTAAAAA
22437222 GAAATTGAAATAAAATAAAATT
1 GAAATTGAAATAAAATAAAATT
*
22437244 GAAATTGAAATAAAATGAAATT
1 GAAATTGAAATAAAATAAAATT
*
22437266 CAAATTGAA
1 GAAATTGAA
22437275 TAGAAATTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.60, C:0.02, G:0.11, T:0.26
Consensus pattern (22 bp):
GAAATTGAAATAAAATAAAATT
Found at i:22437281 original size:22 final size:22
Alignment explanation
Indices: 22437223--22437287 Score: 87
Period size: 22 Copynumber: 2.9 Consensus size: 22
22437213 ATTTAAAAAG
* *
22437223 AAATTGAAATAAAATAAAATTG
1 AAATTGAAATAAAATGAAATTC
22437245 AAATTGAAATAAAATGAAATTC
1 AAATTGAAATAAAATGAAATTC
22437267 AAATTG-AATAGAAATTGAAAT
1 AAATTGAAATA-AAA-TGAAAT
22437288 GAAAATATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
21 4 0.10
22 29 0.74
23 6 0.15
ACGTcount: A:0.60, C:0.02, G:0.11, T:0.28
Consensus pattern (22 bp):
AAATTGAAATAAAATGAAATTC
Found at i:22437582 original size:17 final size:16
Alignment explanation
Indices: 22437529--22437582 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
22437519 AATGAGATTA
22437529 AAATGAAAAAAAAAGTG
1 AAATGAAAAAAAAA-TG
*** *
22437546 AAATGAAATTCAAATC
1 AAATGAAAAAAAAATG
22437562 AAATGAGAAAAAAAATG
1 AAATGA-AAAAAAAATG
22437579 AAAT
1 AAAT
22437583 TCAAATGAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
16 7 0.25
17 21 0.75
ACGTcount: A:0.67, C:0.04, G:0.13, T:0.17
Consensus pattern (16 bp):
AAATGAAAAAAAAATG
Found at i:22437681 original size:17 final size:17
Alignment explanation
Indices: 22437659--22437692 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22437649 AAAAAAAAGG
*
22437659 TGAAATGAAGTTCAAAT
1 TGAAATGAAATTCAAAT
22437676 TGAAATGAAATTCAAAT
1 TGAAATGAAATTCAAAT
22437693 AAAATGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (17 bp):
TGAAATGAAATTCAAAT
Found at i:22437841 original size:57 final size:56
Alignment explanation
Indices: 22437790--22437930 Score: 115
Period size: 58 Copynumber: 2.5 Consensus size: 56
22437780 ATGAACTTCA
* * * * *
22437790 AATGAAATTTAAAAAGAAATTGAAATGAAA-AAAATCGAGATGAGAAAATGAATTTTTA
1 AATGAAATTTAAAAAGAAATTGAAATCAAATAAAAT-GAGA-AAAAAAATGAA-ATTCA
* * * * * *
22437848 ATTAAAAATAAAAAATGAAA-TGAAATTCAAATAACATGAGAAAAAAAATTAAATTCA
1 AATGAAATTTAAAAA-GAAATTGAAA-TCAAATAAAATGAGAAAAAAAATGAAATTCA
*
22437905 AATGAAATTTAAAAATAAATTGAAAT
1 AATGAAATTTAAAAAGAAATTGAAAT
22437931 TACAAAATAA
Statistics
Matches: 63, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
56 4 0.06
57 19 0.30
58 24 0.38
59 12 0.19
60 4 0.06
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.26
Consensus pattern (56 bp):
AATGAAATTTAAAAAGAAATTGAAATCAAATAAAATGAGAAAAAAAATGAAATTCA
Found at i:22437930 original size:18 final size:19
Alignment explanation
Indices: 22437907--22437959 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
22437897 TAAATTCAAA
22437907 TGAAATTTA-AAAAT-AAAT
1 TGAAA-TTACAAAATAAAAT
22437925 TGAAATTACAAAATAAAAT
1 TGAAATTACAAAATAAAAT
* *
22437944 TGACATT-CGAAATAAA
1 TGAAATTACAAAATAAA
22437960 GTTTTAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 3 0.10
18 18 0.58
19 10 0.32
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.28
Consensus pattern (19 bp):
TGAAATTACAAAATAAAAT
Found at i:22437931 original size:57 final size:56
Alignment explanation
Indices: 22437742--22437937 Score: 171
Period size: 57 Copynumber: 3.4 Consensus size: 56
22437732 AAAAAAGAAA
* * *
22437742 AAAAAGTAAAATGAAATTTAAAGAAAATGAGAAAAAAAATGAACTTCAAATGAAATTT
1 AAAAA-TAAATTGAAATTCAAA-AAAATGAGAAAAAAAATGAAATTCAAATGAAATTT
* * * * * * * * * *
22437800 AAAAAGAAATTGAAA-TGAAAAAAATCGAGATGAGAAAATGAATTTTTAATTAAAAATA
1 AAAAATAAATTGAAATTCAAAAAAAT-GAGA-AAAAAAATGAA-ATTCAAATGAAATTT
* *
22437858 AAAAATGAAA-TGAAATTCAAATAACATGAGAAAAAAAATTAAATTCAAATGAAATTT
1 AAAAAT-AAATTGAAATTCAAA-AAAATGAGAAAAAAAATGAAATTCAAATGAAATTT
22437915 AAAAATAAATTGAAATTACAAAA
1 AAAAATAAATTGAAATT-CAAAA
22437938 TAAAATTGAC
Statistics
Matches: 107, Mismatches: 23, Indels: 17
0.73 0.16 0.12
Matches are distributed among these distances:
55 5 0.05
56 11 0.10
57 40 0.37
58 36 0.34
59 11 0.10
60 4 0.04
ACGTcount: A:0.62, C:0.04, G:0.11, T:0.23
Consensus pattern (56 bp):
AAAAATAAATTGAAATTCAAAAAAATGAGAAAAAAAATGAAATTCAAATGAAATTT
Found at i:22437976 original size:115 final size:113
Alignment explanation
Indices: 22437739--22437994 Score: 309
Period size: 115 Copynumber: 2.2 Consensus size: 113
22437729 ATTAAAAAAG
* * * *
22437739 AAAAAAAAGTAAAATGAAATTTAAAGAAAATGAGAAAAAAAATGAACTTCAAATGAAATTTAAAA
1 AAAAAAAAGTGAAATGAAATTCAAATAAAATGAGAAAAAAAATGAAATTCAAATGAAATTTAAAA
* * * *
22437804 AGAAATTGAAATGAAAAAAATCGAGATGAGAAAATGAATTTTTAATTAA
66 AGAAATTGAAATAAAAAAAATCGACATGAGAAAATAAAGTTTTAATT-A
* * *
22437853 AAATAAAAAATGAAATGAAATTCAAATAACATGAGAAAAAAAATTAAATTCAAATGAAATTTAAA
1 AAA-AAAAAGTGAAATGAAATTCAAATAAAATGAGAAAAAAAATGAAATTCAAATGAAATTTAAA
* * **
22437918 AATAAATTGAAATTACAAAATAAAATTGACATTCG-AAATAAAGTTTTAATT-
65 AAGAAATTGAAA-T--AAAA-AAAATCGACATGAGAAAATAAAGTTTTAATTA
22437969 AAAAAAAAGTGAAATGAAATTCAAAT
1 AAAAAAAAGTGAAATGAAATTCAAAT
22437995 TGAGATGAAA
Statistics
Matches: 121, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
114 3 0.02
115 87 0.72
116 4 0.03
118 17 0.14
119 10 0.08
ACGTcount: A:0.61, C:0.04, G:0.11, T:0.25
Consensus pattern (113 bp):
AAAAAAAAGTGAAATGAAATTCAAATAAAATGAGAAAAAAAATGAAATTCAAATGAAATTTAAAA
AGAAATTGAAATAAAAAAAATCGACATGAGAAAATAAAGTTTTAATTA
Found at i:22438044 original size:11 final size:11
Alignment explanation
Indices: 22438024--22438065 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
22438014 CATGAGAAAA
*
22438024 AAATGGAATTT
1 AAATGAAATTT
22438035 AAATGAAATTT
1 AAATGAAATTT
22438046 GAAATG-AATATT
1 -AAATGAAAT-TT
22438058 AAATGAAA
1 AAATGAAA
22438066 AGGAAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (11 bp):
AAATGAAATTT
Found at i:22438088 original size:17 final size:17
Alignment explanation
Indices: 22438044--22438089 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
22438034 TAAATGAAAT
*
22438044 TTGAAATGAATATTAAA
1 TTGAAATGAAAATTAAA
*
22438061 -TGAAAAGGAAAATTAAA
1 TTG-AAATGAAAATTAAA
22438078 TTGAAATGAAAA
1 TTGAAATGAAAA
22438090 AAAAAAGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 2 0.08
17 20 0.83
18 2 0.08
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (17 bp):
TTGAAATGAAAATTAAA
Found at i:22440001 original size:19 final size:19
Alignment explanation
Indices: 22439976--22440064 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
22439966 ATAATCTTCA
22439976 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
22439995 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
22440014 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
22440031 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
22440049 ATGATATACAATCTTA
1 ATGATATGCAATCTTA
22440065 AAAGATATGA
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 32 0.50
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:22440016 original size:14 final size:15
Alignment explanation
Indices: 22439997--22440052 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
22439987 TCTTAGATGT
22439997 GATATG-CAATCTTA
1 GATATGACAATCTTA
22440011 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
22440028 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
22440046 GATATGA
1 GATATGA
22440053 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:22440046 original size:35 final size:37
Alignment explanation
Indices: 22439984--22440064 Score: 130
Period size: 35 Copynumber: 2.2 Consensus size: 37
22439974 CAATGATATG
*
22439984 CAATCTTAGATGTGATATGCAATCTTAGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
22440020 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGA-ATA
22440057 CAATCTTA
1 CAATCTTA
22440065 AAAGATATGA
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
35 16 0.38
36 15 0.36
37 11 0.26
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:22445778 original size:9 final size:9
Alignment explanation
Indices: 22445742--22445784 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
22445732 AAAAAATAAA
22445742 AGAAAAAGAG
1 AGAAAAA-AG
* *
22445752 AAAAAAAAA
1 AGAAAAAAG
22445761 AGAAAAAAG
1 AGAAAAAAG
22445770 AGAAAAAAG
1 AGAAAAAAG
22445779 -GAAAAA
1 AGAAAAA
22445785 GAAAAAATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
8 6 0.21
9 17 0.59
10 6 0.21
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
AGAAAAAAG
Found at i:22445788 original size:34 final size:34
Alignment explanation
Indices: 22445718--22445791 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
22445708 CTTCTATTTC
* *
22445718 AAAAAAAAAAGGCAAAAAAATAAAAGAAAAAGAG
1 AAAAAAAAAAGGAAAAAAAAAAAAAGAAAAAGAG
*
22445752 AAAAAAAAAA-GAAAAAAGAGAAAAAAGGAAAA-AG
1 AAAAAAAAAAGGAAAAAA-A-AAAAAAGAAAAAGAG
22445786 AAAAAA
1 AAAAAA
22445792 TGAAGAGGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 6 0.17
34 19 0.54
35 10 0.29
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.01
Consensus pattern (34 bp):
AAAAAAAAAAGGAAAAAAAAAAAAAGAAAAAGAG
Found at i:22446776 original size:43 final size:41
Alignment explanation
Indices: 22446729--22446871 Score: 121
Period size: 43 Copynumber: 3.3 Consensus size: 41
22446719 CGCCTTAACC
22446729 CCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGG-TAAAATTAC-GATCTTATCT
* * * **
22446772 CCCTAAGCAGTAGTGG-AATAGAT-CAACGACGACTCGCCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTAAAATTACGA-T---CTT-ATCT
*
22446816 CCCTAAGCAGTAGGGTAACAGGTCAAAATTGCGGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGT-AAAATTAC-GATCTTATCT
22446859 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
22446872 TGGAGCAGAT
Statistics
Matches: 78, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
40 2 0.03
41 5 0.06
42 4 0.05
43 35 0.45
44 23 0.29
45 3 0.04
46 4 0.05
47 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGGTAAAATTACGATCTTATCT
Found at i:22446865 original size:87 final size:84
Alignment explanation
Indices: 22446718--22446925 Score: 280
Period size: 87 Copynumber: 2.5 Consensus size: 84
22446708 ACAAAATTTA
22446718 GCGCCTTAACCCCCTAAGCAGTAGGGTAACAGG-CTAAAATTACAGATCTTATCTCCCTAAGCAG
1 GCGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGTCTAAAATTACAGATCTTATCTCCCTAAGCAG
* *
22446782 TAGTGGAATAGATC-AACGAC
65 TAGTGGAACAGATCGAA-GAT
* *
22446802 GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTC-AAAATTGCGGATCTTATCTCCCTAAG
1 G---CGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGTCTAAAATTACAGATCTTATCTCCCTAAG
*
22446866 CAGTAGTGGAGCAGATCGAAGAT
62 CAGTAGTGGAACAGATCGAAGAT
*
22446889 GCGCCTTAACCTCTAAGCAGTAGGGTAACAGGT-TAAA
1 GCGCCTTAACCCCTAAGCAGTAGGGTAACAGGTCTAAA
22446926 GTATAGCAGA
Statistics
Matches: 111, Mismatches: 7, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
83 26 0.23
84 9 0.08
87 73 0.66
88 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.22
Consensus pattern (84 bp):
GCGCCTTAACCCCTAAGCAGTAGGGTAACAGGTCTAAAATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAACAGATCGAAGAT
Found at i:22447411 original size:207 final size:207
Alignment explanation
Indices: 22447047--22448591 Score: 2669
Period size: 207 Copynumber: 7.5 Consensus size: 207
22447037 TGACGGAGAG
* * * *
22447047 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTATGATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
22447112 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * *
22447177 CATAGCAGATCTGACCTTTAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCGTCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
22447242 GCTTACAAGTAA
196 GCTTACAAGGAA
*
22447254 CAAATCGAAGACATAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
*
22447319 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTATCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
22447384 CATAGTAGATCTGGCCTTCATATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
22447449 GCTTACAAGGAG
196 GCTTACAAGGAA
* *
22447461 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTATGTTGAAGTAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
22447526 GTATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
22447591 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
22447656 GCTTACAAGGAA
196 GCTTACAAGGAA
22447668 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* * *
22447733 GCATCTCTGTATTGTCAGAGAACAAATAGAAGTTTGGCATATCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
22447798 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
22447863 ACTTACAAGGAA
196 GCTTACAAGGAA
*
22447875 AAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
22447940 GCATCTTTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
22448005 CATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCATTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
22448070 GCTTACAAGGAA
196 GCTTACAAGGAA
22448082 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
*
22448147 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTTGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
22448212 CATAGTAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATTCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
22448277 GCTTACAAGGAA
196 GCTTACAAGGAA
* *
22448289 CAAATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTATGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
22448354 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAAACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* ** * * * *
22448419 TATAGCAGATCTAACCTTCAGATGATTAAACTGAAGC-AGATCCAATATGGTTTGGTATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
22448483 GCTTACAAGGAG
196 GCTTACAAGGAA
* * *
22448495 CAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
22448560 GCATCTCTGTATTGTCAGGGAACAAATTGAAG
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAG
22448592 AAGCAGATTT
Statistics
Matches: 1268, Mismatches: 70, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
206 124 0.10
207 1144 0.90
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (207 bp):
CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAA
Found at i:22448997 original size:17 final size:18
Alignment explanation
Indices: 22448984--22449089 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 18
22448974 TAATCTTCAA
22448984 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
*
22449003 TGATATGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
22449022 TGAT-TGTAATCTTAGA-
1 TGATATGCAATCTTAGAG
*
22449038 TACGATA--CAATCTTAGATA
1 T--GATATGCAATCTTAGA-G
*
22449057 TGAT-TGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
22449075 TGATATACAATCTTA
1 TGATATGCAATCTTA
22449090 AAAGATATGA
Statistics
Matches: 75, Mismatches: 4, Indels: 16
0.79 0.04 0.17
Matches are distributed among these distances:
16 1 0.01
17 12 0.16
18 30 0.40
19 32 0.43
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:22449008 original size:19 final size:19
Alignment explanation
Indices: 22448983--22449089 Score: 150
Period size: 18 Copynumber: 5.8 Consensus size: 19
22448973 ATAATCTTCA
22448983 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
22449002 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
22449021 ATGAT-TGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
22449039 ACGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
22449056 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
22449074 ATGATATACAATCTTA
1 ATGATATGCAATCTTA
22449090 AAAGATATGA
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
17 14 0.18
18 32 0.42
19 31 0.40
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:22449054 original size:35 final size:35
Alignment explanation
Indices: 22448983--22449089 Score: 142
Period size: 35 Copynumber: 2.9 Consensus size: 35
22448973 ATAATCTTCA
*
22448983 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATA--CAATCTTAGAT
* *
22449021 ATGATTGTAATCTTAGATACGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
22449056 ATGATTGCAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTA
22449090 AAAGATATGA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
35 30 0.48
37 27 0.44
38 5 0.08
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:22450156 original size:88 final size:89
Alignment explanation
Indices: 22450024--22450254 Score: 338
Period size: 88 Copynumber: 2.6 Consensus size: 89
22450014 GGTTTCGACA
* * ** * *
22450024 CAAATAACAAATAATACGGACTAAATTAAATTTACAGACCCAAAAAAATACAAATATTCTAAAAT
1 CAAACAACAAATAATACAGACTAAATTAAATTTACAGATACAAAAAAATACAAACATTCTAAAAA
* *
22450089 TTTAATACATGAAAATATAAAATT
66 ATTAATACACGAAAATATAAAATT
*
22450113 CAAACAACAAATAATACAAACT-AATTAAATTTACAGATACAAAAAAATACAAACATTCTAAAAA
1 CAAACAACAAATAATACAGACTAAATTAAATTTACAGATACAAAAAAATACAAACATTCTAAAAA
22450177 ATTAATACACGAAAATATAAAATT
66 ATTAATACACGAAAATATAAAATT
* **
22450201 CGAACAACAAATAATACAGACTAAATTTGATTTACAGATACAAAAATAATACAA
1 CAAACAACAAATAATACAGACTAAATTAAATTTACAGATACAAAAA-AATACAA
22450255 TTTTTTTAAA
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
88 80 0.63
89 40 0.31
90 7 0.06
ACGTcount: A:0.58, C:0.13, G:0.04, T:0.24
Consensus pattern (89 bp):
CAAACAACAAATAATACAGACTAAATTAAATTTACAGATACAAAAAAATACAAACATTCTAAAAA
ATTAATACACGAAAATATAAAATT
Found at i:22450586 original size:26 final size:25
Alignment explanation
Indices: 22450521--22450591 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 25
22450511 AATTCGGTTG
*
22450521 TACACTACAAAACACTCCCATTTGCAA
1 TACACTACAAAACACT--CATTTGAAA
* *
22450548 TCCACTACAAAAAAACTCATTTGAAGA
1 TACACTAC-AAAACACTCATTTGAA-A
22450575 TACACTACAAAACACTC
1 TACACTACAAAACACTC
22450592 TCATTTTGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
26 15 0.41
27 15 0.41
28 7 0.19
ACGTcount: A:0.45, C:0.30, G:0.04, T:0.21
Consensus pattern (25 bp):
TACACTACAAAACACTCATTTGAAA
Found at i:22452694 original size:31 final size:29
Alignment explanation
Indices: 22452659--22452732 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
22452649 ATTTAATCAC
22452659 TTAGGATTTTCCTTGATGGATATTTATTATA
1 TTAGGATTTTCCTTG-T-GATATTTATTATA
* ** **
22452690 TTAGGTTTTTTTTTGTTTTATTTATTATA
1 TTAGGATTTTCCTTGTGATATTTATTATA
*
22452719 TTAAGATTTTCCTT
1 TTAGGATTTTCCTT
22452733 TAATTATAGG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
29 21 0.62
30 1 0.03
31 12 0.35
ACGTcount: A:0.22, C:0.05, G:0.12, T:0.61
Consensus pattern (29 bp):
TTAGGATTTTCCTTGTGATATTTATTATA
Found at i:22454516 original size:10 final size:10
Alignment explanation
Indices: 22454501--22454568 Score: 72
Period size: 10 Copynumber: 6.9 Consensus size: 10
22454491 TAATTAATTA
22454501 ATTTTTAAAT
1 ATTTTTAAAT
22454511 ATTTTTAAAT
1 ATTTTTAAAT
*
22454521 ATTTCTT-TAT
1 ATTT-TTAAAT
22454531 ATGTTTTATAAT
1 AT-TTTTA-AAT
22454543 -TTTTTAAA-
1 ATTTTTAAAT
22454551 ATTTTTAAA-
1 ATTTTTAAAT
22454560 ATTTTTAAA
1 ATTTTTAAA
22454569 AAATAATTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
9 19 0.37
10 25 0.49
11 5 0.10
12 2 0.04
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (10 bp):
ATTTTTAAAT
Found at i:22454546 original size:9 final size:9
Alignment explanation
Indices: 22454543--22454569 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
22454533 GTTTTATAAT
22454543 TTTTTAAAA
1 TTTTTAAAA
22454552 TTTTTAAAA
1 TTTTTAAAA
22454561 TTTTTAAAA
1 TTTTTAAAA
22454570 AATAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:22459613 original size:62 final size:59
Alignment explanation
Indices: 22459488--22459614 Score: 132
Period size: 62 Copynumber: 2.1 Consensus size: 59
22459478 AATTAGTAGG
* * * * *
22459488 GTGACCAAATTAAAAAAATTGATAGTTGGATGACAAAAAAGAAAATGGACAATAAATGG
1 GTGACCAAATTAAAAAAAATAATAATTGGATCACAAAAAAGAAAATGGACAATAAATGA
* *
22459547 GTGACCAAATTAAAAAATAATAATAATTGGGTCACTAAAAAA-ATTAAAT-GAGCAATAATTGA
1 GTGACCAAATTAAAAAA-AATAATAATTGGATCAC-AAAAAAGA--AAATGGA-CAATAAATGA
22459609 GTGACC
1 GTGACC
22459615 CATGATGTAG
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
59 17 0.30
60 13 0.23
61 8 0.14
62 18 0.32
ACGTcount: A:0.51, C:0.09, G:0.17, T:0.23
Consensus pattern (59 bp):
GTGACCAAATTAAAAAAAATAATAATTGGATCACAAAAAAGAAAATGGACAATAAATGA
Found at i:22460655 original size:61 final size:61
Alignment explanation
Indices: 22460588--22460708 Score: 197
Period size: 61 Copynumber: 2.0 Consensus size: 61
22460578 ATAACAGACG
22460588 ATTTAAACATATAAACAATTGATCCAAAAGAAGAAGAAGTAATATTCCAACATAACAATCA
1 ATTTAAACATATAAACAATTGATCCAAAAGAAGAAGAAGTAATATTCCAACATAACAATCA
* * * * *
22460649 ATTTAAACATATAAACAATTGATTCAAAAGAATAAGAAGTAGTATTCTACCATAACAATC
1 ATTTAAACATATAAACAATTGATCCAAAAGAAGAAGAAGTAATATTCCAACATAACAATC
22460709 GATTCAAAAG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.26
Consensus pattern (61 bp):
ATTTAAACATATAAACAATTGATCCAAAAGAAGAAGAAGTAATATTCCAACATAACAATCA
Found at i:22463101 original size:42 final size:43
Alignment explanation
Indices: 22463024--22463127 Score: 133
Period size: 42 Copynumber: 2.4 Consensus size: 43
22463014 TCTTACATGT
*
22463024 AATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACACA-A
1 AATCAAATA-CGATGCCACTGTCCCAAACAAGGTCTTACACATA
*
22463067 AATCAAATACGATGCCGA-TGTCCCAAACATGGTCTTACACATA
1 AATCAAATACGATGCC-ACTGTCCCAAACAAGGTCTTACACATA
22463110 AATCTCAAAT-CGATGCCA
1 AA--TCAAATACGATGCCA
22463128 ACATCCCAGA
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
42 28 0.51
43 14 0.25
44 7 0.13
45 6 0.11
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.22
Consensus pattern (43 bp):
AATCAAATACGATGCCACTGTCCCAAACAAGGTCTTACACATA
Found at i:22472296 original size:15 final size:15
Alignment explanation
Indices: 22472278--22472321 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
22472268 GAAGCCCAGA
22472278 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
22472293 ATAAATAAATCCATG
1 ATAAAGAAATCCAAG
*
22472308 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
22472322 TTTACAAGAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.57, C:0.14, G:0.11, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:22474173 original size:20 final size:20
Alignment explanation
Indices: 22474148--22474193 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
22474138 TGTGGGTGGG
22474148 CCGTGTGGCTTGGGACACGC
1 CCGTGTGGCTTGGGACACGC
*
22474168 CCGTGTGGCTTGGTACACGC
1 CCGTGTGGCTTGGGACACGC
22474188 CCGTGT
1 CCGTGT
22474194 CCTCAGCCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.09, C:0.30, G:0.37, T:0.24
Consensus pattern (20 bp):
CCGTGTGGCTTGGGACACGC
Found at i:22481166 original size:43 final size:42
Alignment explanation
Indices: 22481111--22481217 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 42
22481101 TGCCAACGTT
22481111 CCAGACATGGTCTTACATGTAATCAAATATCGATGC-CACTATC
1 CCAGACATGGTCTTACATGTAATCAAATA-CGATGCTCA-TATC
* *** * *
22481154 CCAGACAGGGTCTTACACAAAATCAAATACGATGCTGATGTC
1 CCAGACATGGTCTTACATGTAATCAAATACGATGCTCATATC
*
22481196 CCAGGCATGGTCTTACATGTAA
1 CCAGACATGGTCTTACATGTAA
22481218 ATCTCAAATC
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (42 bp):
CCAGACATGGTCTTACATGTAATCAAATACGATGCTCATATC
Found at i:22481220 original size:43 final size:44
Alignment explanation
Indices: 22481111--22481272 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 44
22481101 TGCCAACGTT
22481111 CCAGACATGGTCTTACATGT-AATCAAATATCGATGCCACTATC
1 CCAGACATGGTCTTACATGTAAATCAAATATCGATGCCACTATC
* ** * *
22481154 CCAGACAGGGTCTTACA-CAAAATCAAATA-CGATGCTGA-TGTC
1 CCAGACATGGTCTTACATGTAAATCAAATATCGATGC-CACTATC
* * * * *
22481196 CCAGGCATGGTCTTACATGTAAATCTCAA-ATCGATGACAATGTC
1 CCAGACATGGTCTTACATGTAAATC-AAATATCGATGCCACTATC
* * * *
22481240 CCAAACGTGGTCTTACACG-AAATCATATATCGA
1 CCAGACATGGTCTTACATGTAAATCAAATATCGA
22481273 AATCCTATGT
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
42 25 0.27
43 43 0.46
44 26 0.28
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (44 bp):
CCAGACATGGTCTTACATGTAAATCAAATATCGATGCCACTATC
Found at i:22481241 original size:44 final size:43
Alignment explanation
Indices: 22481111--22481256 Score: 122
Period size: 42 Copynumber: 3.4 Consensus size: 43
22481101 TGCCAACGTT
* * *
22481111 CCAGACATGGTCTTACATGT-AATC-AAATATCGATGCCACTATC
1 CCAGACATGGTCTTACATGTAAATCTCAA-ATCGATG-CAATGTC
* * * *
22481154 CCAGACAGGGTCTTACA--CAAA-ATCAAATACGATGCTGATGTC
1 CCAGACATGGTCTTACATGTAAATCTCAAAT-CGATGC-AATGTC
*
22481196 CCAGGCATGGTCTTACATGTAAATCTCAAATCGATGACAATGTC
1 CCAGACATGGTCTTACATGTAAATCTCAAATCGATG-CAATGTC
* *
22481240 CCAAACGTGGTCTTACA
1 CCAGACATGGTCTTACA
22481257 CGAAATCATA
Statistics
Matches: 80, Mismatches: 15, Indels: 15
0.73 0.14 0.14
Matches are distributed among these distances:
41 3 0.04
42 27 0.34
43 16 0.20
44 27 0.34
45 7 0.09
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
CCAGACATGGTCTTACATGTAAATCTCAAATCGATGCAATGTC
Found at i:22487050 original size:10 final size:10
Alignment explanation
Indices: 22487035--22487084 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
22487025 AGAAGGGAAT
22487035 GAAAAAAAAA
1 GAAAAAAAAA
22487045 GAAAAAAAAA
1 GAAAAAAAAA
*
22487055 GAAAATTAAAA
1 GAAAA-AAAAA
* *
22487066 GAACATAAAA
1 GAAAAAAAAA
22487076 GAAAAAAAA
1 GAAAAAAAA
22487085 TTAAATTTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
10 27 0.77
11 8 0.23
ACGTcount: A:0.82, C:0.02, G:0.10, T:0.06
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:22487065 original size:25 final size:25
Alignment explanation
Indices: 22487036--22487089 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
22487026 GAAGGGAATG
*
22487036 AAAAAAAAAGAAAAAAAAAGAAAATT
1 AAAAGAAAAGAAAAAAAAA-AAAATT
* * *
22487062 AAAAGAACATAAAAGAAAAAAAATT
1 AAAAGAAAAGAAAAAAAAAAAAATT
22487087 AAA
1 AAA
22487090 TTTCTCAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.81, C:0.02, G:0.07, T:0.09
Consensus pattern (25 bp):
AAAAGAAAAGAAAAAAAAAAAAATT
Found at i:22487067 original size:21 final size:21
Alignment explanation
Indices: 22487041--22487080 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22487031 GAATGAAAAA
22487041 AAAAGAAAAAAAAAGAAAATT
1 AAAAGAAAAAAAAAGAAAATT
* *
22487062 AAAAGAACATAAAAGAAAA
1 AAAAGAAAAAAAAAGAAAA
22487081 AAAATTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.80, C:0.03, G:0.10, T:0.07
Consensus pattern (21 bp):
AAAAGAAAAAAAAAGAAAATT
Found at i:22489358 original size:28 final size:28
Alignment explanation
Indices: 22489313--22489378 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
22489303 GCATCTGATA
*
22489313 CTGATTCTG-TATTGGGCTTAGGCCCAC
1 CTGATTCTGTTATTGGGCTAAGGCCCAC
*
22489340 TTGATTCTGTTATTGGGCTAAGGCCCAC
1 CTGATTCTGTTATTGGGCTAAGGCCCAC
*
22489368 CTGATACTGTT
1 CTGATTCTGTT
22489379 TCTGTAATGG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 8 0.24
28 26 0.76
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (28 bp):
CTGATTCTGTTATTGGGCTAAGGCCCAC
Found at i:22500176 original size:45 final size:45
Alignment explanation
Indices: 22500088--22500305 Score: 361
Period size: 45 Copynumber: 4.9 Consensus size: 45
22500078 CTAAATTCAT
22500088 TCACCGGCATT-TCA-CCTGCTAGGCTC-AAGGCCCGAATAATATC
1 TCACCGGCATTAT-AGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
22500131 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
22500176 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
22500221 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAGAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
22500266 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
22500306 GTACTGTACA
Statistics
Matches: 163, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
43 11 0.07
44 13 0.08
45 139 0.85
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:22507797 original size:30 final size:30
Alignment explanation
Indices: 22507761--22507820 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
22507751 TTCCCGAGCC
*
22507761 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
22507791 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
22507821 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:22510974 original size:45 final size:45
Alignment explanation
Indices: 22510920--22511080 Score: 259
Period size: 45 Copynumber: 3.6 Consensus size: 45
22510910 CCGATATTTC
* *
22510920 GCCTGCTAGGCTCAAAGGCCCGAATATTATCTCACCGGTAGTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATATTATCTCACCGGCATTATA
* *
22510965 GCTTGCTAGGCTCAAAGGCCCGAATATTATCTCACCTGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATATTATCTCACCGGCATTATA
* * *
22511010 GCCTACTAGGCTCAAAGGACCGAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATATTATCTCACCGGCATTATA
22511055 GCCTGCTAGGCTCAAAGGCCCGAATA
1 GCCTGCTAGGCTCAAAGGCCCGAATA
22511081 GTACTGTACA
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 105 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATATTATCTCACCGGCATTATA
Found at i:22542530 original size:42 final size:42
Alignment explanation
Indices: 22542461--22542540 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 42
22542451 GTTTTTTCGC
* * * * *
22542461 AAATGCCGCTAAAGACTAGGACTTTTAGCGGCGCTTTTAAAA
1 AAATGCCGCTAAAAACCAGAACCTTTAGCGGCACTTTTAAAA
* *
22542503 AAATGCCGCTAAAAACCATAACCTTTAGTGGCACTTTT
1 AAATGCCGCTAAAAACCAGAACCTTTAGCGGCACTTTT
22542541 TTCTCAAACG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 31 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (42 bp):
AAATGCCGCTAAAAACCAGAACCTTTAGCGGCACTTTTAAAA
Found at i:22542876 original size:17 final size:18
Alignment explanation
Indices: 22542849--22542882 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
22542839 ATGCCAAAAT
22542849 GTTGAACTCCATATTCCA
1 GTTGAACTCCATATTCCA
22542867 GTTG-ACTCCATATTCC
1 GTTGAACTCCATATTCC
22542883 CCCACATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (18 bp):
GTTGAACTCCATATTCCA
Found at i:22544196 original size:20 final size:20
Alignment explanation
Indices: 22544171--22544211 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
22544161 CAGGACAGAT
22544171 AGCAAAATTTTACCAATAAG
1 AGCAAAATTTTACCAATAAG
22544191 AGCAAAATTTTACCAATAAG
1 AGCAAAATTTTACCAATAAG
22544211 A
1 A
22544212 TTTATAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.24
Consensus pattern (20 bp):
AGCAAAATTTTACCAATAAG
Found at i:22546828 original size:22 final size:21
Alignment explanation
Indices: 22546794--22546842 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
22546784 CATAAACACT
*
22546794 AACCCTTGAACCTTTAACCCC
1 AACCCTTGAACCTTAAACCCC
*
22546815 AAACCCTT-ACACCTTAAACTCC
1 -AACCCTTGA-ACCTTAAACCCC
22546837 AACCCT
1 AACCCT
22546843 AACCCCTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.33, C:0.43, G:0.02, T:0.22
Consensus pattern (21 bp):
AACCCTTGAACCTTAAACCCC
Found at i:22546922 original size:21 final size:22
Alignment explanation
Indices: 22546898--22546978 Score: 94
Period size: 21 Copynumber: 3.6 Consensus size: 22
22546888 ACTCCTAAAC
22546898 CTTAAACCCTAAACT-ATATAT
1 CTTAAACCCTAAACTCATATAT
* * *
22546919 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCCTA---AACTCATATAT
22546944 CTTAAACCCTAAA-TCATATAT
1 CTTAAACCCTAAACTCATATAT
22546965 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
22546979 CTTAAACTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
21 29 0.59
22 2 0.04
24 4 0.08
25 14 0.29
ACGTcount: A:0.43, C:0.26, G:0.01, T:0.30
Consensus pattern (22 bp):
CTTAAACCCTAAACTCATATAT
Found at i:22546935 original size:46 final size:46
Alignment explanation
Indices: 22546882--22546972 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
22546872 CTTCAAATAC
*
22546882 TAGTTAACTCCTAAACCTTAAACCCTAAA-CTATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAATC-ATATATCTTAAACCA
22546928 TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACC
1 TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACC
22546973 CTAAACCTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 42 0.98
47 1 0.02
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACCA
Found at i:22547029 original size:25 final size:25
Alignment explanation
Indices: 22546995--22547044 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
22546985 CTATAATGAT
22546995 AATTAATTCGATATTTTAAATTCAA
1 AATTAATTCGATATTTTAAATTCAA
22547020 AATTAATTCGATATTTTAAATTCAA
1 AATTAATTCGATATTTTAAATTCAA
22547045 TACTATCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (25 bp):
AATTAATTCGATATTTTAAATTCAA
Found at i:22547270 original size:41 final size:41
Alignment explanation
Indices: 22547173--22547268 Score: 140
Period size: 41 Copynumber: 2.4 Consensus size: 41
22547163 GTTATATGAC
* * * * *
22547173 TTTTAGTGGTGTTTTGTCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTATTGCTCTGGT
22547214 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTATTGCTCTGGT
22547254 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
22547269 TGGTAAAACG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 17 0.34
41 33 0.66
ACGTcount: A:0.14, C:0.20, G:0.27, T:0.40
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTATTGCTCTGGT
Found at i:22547284 original size:40 final size:41
Alignment explanation
Indices: 22547173--22547287 Score: 126
Period size: 41 Copynumber: 2.8 Consensus size: 41
22547163 GTTATATGAC
* * * * * *
22547173 TTTTAGTGGTGTTTTGTCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGACGCTATTGCTCTGGT
*
22547214 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTGCCAAAAGCGACGCTATTGCTCTGGT
**
22547254 TTTTAGCGGCGTTTTTGGTAAAA-CGACGCTATTG
1 TTTTAGCGGCG-TTTTGCCAAAAGCGACGCTATTG
22547288 ATCAGTAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
40 23 0.35
41 42 0.65
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTGCCAAAAGCGACGCTATTGCTCTGGT
Found at i:22550664 original size:16 final size:16
Alignment explanation
Indices: 22550625--22550666 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
22550615 AAGGAAGATA
*
22550625 TTATTTTATTTTTGTT
1 TTATTTTATTTTTATT
22550641 TT-TATTTATTTTTATT
1 TTAT-TTTATTTTTATT
22550657 TTATTTTATT
1 TTATTTTATT
22550667 ATTAAATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 1 0.04
16 21 0.91
17 1 0.04
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (16 bp):
TTATTTTATTTTTATT
Found at i:22551066 original size:31 final size:31
Alignment explanation
Indices: 22551028--22551088 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
22551018 GGCTCTTATG
22551028 GGAGTGAAAAGGGGTGTTTAGTTTTTTTTTT
1 GGAGTGAAAAGGGGTGTTTAGTTTTTTTTTT
22551059 GGAGTGAAAAGGGGTGTTTAGTTTTTTTTT
1 GGAGTGAAAAGGGGTGTTTAGTTTTTTTTT
22551089 CTACTTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.48
Consensus pattern (31 bp):
GGAGTGAAAAGGGGTGTTTAGTTTTTTTTTT
Found at i:22557081 original size:40 final size:40
Alignment explanation
Indices: 22556988--22557210 Score: 215
Period size: 40 Copynumber: 5.7 Consensus size: 40
22556978 GCTCCTCGTT
* * *
22556988 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAAC-C-CA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
22557026 CACAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CA-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
22557067 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
22557107 CAAAGGCCTTCGGGGCTTAACCCGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
22557146 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
22557187 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
22557211 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
38 4 0.03
39 68 0.44
40 72 0.46
41 11 0.07
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:22557171 original size:79 final size:79
Alignment explanation
Indices: 22556988--22557172 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 79
22556978 GCTCCTCGTT
* * * *
22556988 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACCCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACCCACACAAGGCCTTCGGGACTTAACCCGAA
*
22557053 TTTAATAACTCGCA
66 CTTAATAACTCGCA
* * * *
22557067 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA-AAGGCCTTCGGGGCTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC-C-CACACAAGGCCTTCGGGACTTAACCCG
* *
22557131 AACTT-GTATCTCGCA
64 AACTTAATAACTCGCA
*
22557146 CAAATGCCTTC-GGATCTTAGTCCGGAT
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT
22557173 ATATTCACTT
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 24 0.27
81 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACCCACACAAGGCCTTCGGGACTTAACCCGAA
CTTAATAACTCGCA
Found at i:22557195 original size:79 final size:79
Alignment explanation
Indices: 22556988--22557208 Score: 191
Period size: 79 Copynumber: 2.8 Consensus size: 79
22556978 GCTCCTCGTT
* * * * * * * *
22556988 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACCCA-CACAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGT-ATCTAGCACAAAGCCTTCGGGACTTAACCCGA
*
22557052 ATTTAATAACTCGCA
65 ACTTAATAACTCGCA
* * * *
22557067 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTATCTAGCACAAA-GCCTTCGGGACTTAACCCGA
* *
22557132 ACTT-GTATCTCGCA
65 ACTTAATAACTCGCA
** * *
22557146 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCACAAAGCCTTC-GGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGT-ATC-TAGCACAAAGCCTTCGGGACTTAACCC
22557208 G
63 G
22557209 GACAGCATTC
Statistics
Matches: 116, Mismatches: 21, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
78 15 0.13
79 71 0.61
80 30 0.26
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTATCTAGCACAAAGCCTTCGGGACTTAACCCGAA
CTTAATAACTCGCA
Found at i:22557219 original size:40 final size:41
Alignment explanation
Indices: 22557143--22557219 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
22557133 CTTGTATCTC
* * *
22557143 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
22557184 GCACAAA-GCCTTCGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACA-CATTCA
22557220 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 11 0.34
40 14 0.44
41 7 0.22
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:22640269 original size:20 final size:21
Alignment explanation
Indices: 22640216--22640271 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
22640206 AGCAGATTTT
*
22640216 GAGAAATAAAGAGCAGCTAGAA
1 GAGAAA-AAAGAGCAGATAGAA
*
22640238 -ACGAAAATAGAGCAGAT-GAA
1 GA-GAAAAAAGAGCAGATAGAA
22640258 GAGAAAAAAGAGCA
1 GAGAAAAAAGAGCA
22640272 TTTGAGCTCG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 14 0.48
21 11 0.38
22 4 0.14
ACGTcount: A:0.57, C:0.09, G:0.27, T:0.07
Consensus pattern (21 bp):
GAGAAAAAAGAGCAGATAGAA
Found at i:22642080 original size:38 final size:38
Alignment explanation
Indices: 22642013--22642131 Score: 127
Period size: 38 Copynumber: 3.1 Consensus size: 38
22642003 CCACACAAGC
* *
22642013 CTTCGGGACTTAACCGGATTTA-TAACTCGCACGAAATG
1 CTTCGGGACTTAACCGAATTTAGTATCTCGCAC-AAATG
* *
22642051 CTTC-GGACTTAACCGTATTTAGTATCTCGCACAAAGG
1 CTTCGGGACTTAACCGAATTTAGTATCTCGCACAAATG
* * *
22642088 CCTTCGGGGCTTAACCGAACTT-GTATCTCGCACCAAATC
1 -CTTCGGGACTTAACCGAATTTAGTATCTCGCA-CAAATG
22642127 CTTCG
1 CTTCG
22642132 ATCTTAGTCC
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
37 20 0.29
38 32 0.46
39 17 0.25
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (38 bp):
CTTCGGGACTTAACCGAATTTAGTATCTCGCACAAATG
Found at i:22649496 original size:38 final size:40
Alignment explanation
Indices: 22649407--22649627 Score: 199
Period size: 39 Copynumber: 5.7 Consensus size: 40
22649397 AGCTCTCGTT
* * *
22649407 CAAATGCCTTCGGGACATAAGCCGGTTTTAGTAAC-C-CA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
22649445 CACAATGCCTTC-GGACTTAACCCGGATTTA-TAACTCGCA
1 CA-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
22649484 CGAATGCCTTCGGGACTTAA-CCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
22649523 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
22649563 CAAATGCCTTC--GATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
22649603 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
22649628 CAGCATTCAA
Statistics
Matches: 151, Mismatches: 20, Indels: 22
0.78 0.10 0.11
Matches are distributed among these distances:
37 4 0.03
38 39 0.26
39 61 0.40
40 42 0.28
41 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:22649532 original size:77 final size:79
Alignment explanation
Indices: 22649407--22649574 Score: 209
Period size: 77 Copynumber: 2.2 Consensus size: 79
22649397 AGCTCTCGTT
* *
22649407 CAAATGCCTTCGGGACATAAGCCGGTTTTAGTAACCCACACAATGCCTTC-GGACTTAACCCGG-
1 CAAATGCCTTCGGGACATAAGCCGGATTTAGTAACCCACACAAGGCCTTCGGGACTTAACCCGGA
*
22649470 ATTTATAACTCGCA
66 ACTTATAACTCGCA
* * * *
22649484 CGAATGCCTTCGGGACTTAA-CCGGATTTAGTATCTCGCACA-AAGGCCTTCGGGGCTTAACCCG
1 CAAATGCCTTCGGGACATAAGCCGGATTTAGTAAC-C-CACACAAGGCCTTCGGGACTTAACCCG
* *
22649547 GAACTTGTATCTCGCA
64 GAACTTATAACTCGCA
22649563 CAAATGCCTTCG
1 CAAATGCCTTCG
22649575 ATCTTAGTCC
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
76 12 0.16
77 27 0.35
78 16 0.21
79 22 0.29
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAAGCCGGATTTAGTAACCCACACAAGGCCTTCGGGACTTAACCCGGA
ACTTATAACTCGCA
Found at i:22649587 original size:79 final size:78
Alignment explanation
Indices: 22649445--22649627 Score: 187
Period size: 79 Copynumber: 2.3 Consensus size: 78
22649435 TAGTAACCCA
* * *
22649445 CACAATGCCTTC-GGACTTAACCCGG-ATTTATAACTCGCACGAATGCCTTCGGGACTTAACCGG
1 CACAAAGCCTTCGGGACTTAACCCGGAACTTATAACTCGCACAAATGCCTTC-GGACTTAACCGG
* *
22649508 ATTTAGT-A-TCTCG
65 ATATAGTCACT-TAG
* * * *
22649521 CACAAAGGCCTTCGGGGCTTAACCCGGAACTTGTATCTCGCACAAATGCCTTC-GATCTTAGTCC
1 CACAAA-GCCTTCGGGACTTAACCCGGAACTTATAACTCGCACAAATGCCTTCGGA-CTTA-ACC
*
22649585 GGATATATTCACTTAG
63 GGATATAGTCACTTAG
*
22649601 CACAAAGCCTTCGGGACTTAGCCCGGA
1 CACAAAGCCTTCGGGACTTAACCCGGA
22649628 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
76 5 0.06
77 8 0.09
78 16 0.18
79 49 0.56
80 9 0.10
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CACAAAGCCTTCGGGACTTAACCCGGAACTTATAACTCGCACAAATGCCTTCGGACTTAACCGGA
TATAGTCACTTAG
Found at i:22658292 original size:28 final size:28
Alignment explanation
Indices: 22658260--22658329 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
22658250 AATGAGATTG
*
22658260 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
22658288 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
22658316 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22658330 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:22664084 original size:13 final size:13
Alignment explanation
Indices: 22664068--22664092 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22664058 AAATCTGCTA
22664068 AAAAAATAAAAAT
1 AAAAAATAAAAAT
22664081 AAAAAATAAAAA
1 AAAAAATAAAAA
22664093 GTAGTTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:22694048 original size:49 final size:49
Alignment explanation
Indices: 22693995--22694226 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
22693985 CTAGTACGCA
*
22693995 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* * * * *
22694044 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACG
* * * * *
22694094 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACG
* * **
22694145 TAGTAGCCTGCACTTAGTACTAGACATGCGACCAATTATCCCGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
*
22694194 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
22694227 TCTCAATAGA
Statistics
Matches: 155, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
49 70 0.45
50 48 0.31
51 37 0.24
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
Found at i:22694223 original size:100 final size:99
Alignment explanation
Indices: 22693995--22694226 Score: 306
Period size: 100 Copynumber: 2.3 Consensus size: 99
22693985 CTAGTACGCA
* * * * *
22693995 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGTCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
* * *
22694060 GTACTACACACGTGACCTAACTATCTGATACATG
66 GTACTACACACGCGACCTAACTATCCGATACACG
* *
22694094 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
* * *
22694159 TAGTACTAGACATGCGACC-AATTATCCCG-TACACG
64 TAGTACTACACACGCGACCTAACTAT-CCGATACACG
22694194 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
22694227 TCTCAATAGA
Statistics
Matches: 116, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
99 30 0.26
100 44 0.38
101 42 0.36
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACTATCCGATACACG
Found at i:22697656 original size:40 final size:40
Alignment explanation
Indices: 22697547--22697733 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
22697537 TATTTGGATG
* *
22697547 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
22697587 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
22697626 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
22697666 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
22697706 ATAACCGGGCT-AGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
22697734 AGCAAGTAGT
Statistics
Matches: 136, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
39 52 0.38
40 84 0.62
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:22697721 original size:79 final size:79
Alignment explanation
Indices: 22697547--22697733 Score: 288
Period size: 79 Copynumber: 2.4 Consensus size: 79
22697537 TATTTGGATG
* *
22697547 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
22697612 TTGTGCGAGCTACT
66 TTGTGCGAGCTACT
* * *
22697626 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
22697690 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGCTACT
22697706 ATAACCGGGCT-AGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
22697734 AGCAAGTAGT
Statistics
Matches: 98, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
78 2 0.02
79 62 0.63
80 34 0.35
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGCTACT
Found at i:22700205 original size:15 final size:15
Alignment explanation
Indices: 22700187--22700219 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
22700177 GAAGCCCAGA
22700187 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
22700202 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
22700217 ATA
1 ATA
22700220 CGAGAATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:22703372 original size:49 final size:49
Alignment explanation
Indices: 22703319--22703550 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
22703309 CTAGTACGCA
*
22703319 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* * * * *
22703368 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACG
* * * * *
22703418 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACG
* * **
22703469 TAGTAGCCTGCACTTAGTACTAGACATGCGACCAATTATCCCGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* *
22703518 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
22703551 TCTCAATAGA
Statistics
Matches: 154, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 69 0.45
50 48 0.31
51 37 0.24
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
Found at i:22703548 original size:100 final size:99
Alignment explanation
Indices: 22703319--22703550 Score: 297
Period size: 100 Copynumber: 2.3 Consensus size: 99
22703309 CTAGTACGCA
* * * * *
22703319 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGTCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
* * *
22703384 GTACTACACACGTGACCTAACTATCTGATACATG
66 GTACTACACACGCGACCTAACTATCCGATACACG
* *
22703418 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
* * *
22703483 TAGTACTAGACATGCGACC-AATTATCCCG-TACACG
64 TAGTACTACACACGCGACCTAACTAT-CCGATACACG
*
22703518 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
22703551 TCTCAATAGA
Statistics
Matches: 115, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
99 30 0.26
100 43 0.37
101 42 0.37
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACTATCCGATACACG
Found at i:22707152 original size:33 final size:34
Alignment explanation
Indices: 22707109--22707205 Score: 106
Period size: 33 Copynumber: 2.9 Consensus size: 34
22707099 GTATTACACT
*
22707109 ATTACTGTATAGGGCTAAGGCCCAGATTGTACTG
1 ATTACTGTATAGGGCTAAGGCCCAGACTGTACTG
* * * *
22707143 -TTACTGTATAGGGCCAAGTCGCAGACTGTATTG
1 ATTACTGTATAGGGCTAAGGCCCAGACTGTACTG
* * * *
22707176 ATTATTGAATAAGGCTCAGGCCCAGACTGT
1 ATTACTGTATAGGGCTAAGGCCCAGACTGT
22707206 TACTACAAGC
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
33 28 0.56
34 22 0.44
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (34 bp):
ATTACTGTATAGGGCTAAGGCCCAGACTGTACTG
Found at i:22710869 original size:47 final size:47
Alignment explanation
Indices: 22710815--22711141 Score: 501
Period size: 47 Copynumber: 7.0 Consensus size: 47
22710805 TTAGGATTTT
** *
22710815 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22710862 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
22710909 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22710956 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22711003 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22711050 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
22711097 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
22711142 TAGTGTGAAA
Statistics
Matches: 255, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 255 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:22710917 original size:25 final size:25
Alignment explanation
Indices: 22710842--22710917 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
22710832 GTGTATATAT
22710842 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
22710867 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
22710889 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
22710914 GTGA
1 GTGA
22710918 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:22710989 original size:25 final size:25
Alignment explanation
Indices: 22710955--22711034 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
22710945 CCGAATGGCC
22710955 TATGTGATGAATGTGAACATGCATA
1 TATGTGATGAATGTGAACATGCATA
*
22710980 TATGTGATG-A-G-GCAGA-ATGGC-CA
1 TATGTGATGAATGTG-A-ACAT-GCATA
*
22711003 -ATGTGATGAATGTGAGCATGCATA
1 TATGTGATGAATGTGAACATGCATA
22711027 TATGTGAT
1 TATGTGAT
22711035 AAGGCCGAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 18
0.67 0.05 0.28
Matches are distributed among these distances:
22 9 0.21
23 8 0.19
24 9 0.21
25 17 0.40
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (25 bp):
TATGTGATGAATGTGAACATGCATA
Found at i:22711105 original size:25 final size:25
Alignment explanation
Indices: 22711030--22711105 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
22711020 ATGCATATAT
22711030 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
22711055 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
22711077 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
22711102 GTGA
1 GTGA
22711106 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:22711362 original size:37 final size:37
Alignment explanation
Indices: 22711307--22711492 Score: 291
Period size: 37 Copynumber: 5.0 Consensus size: 37
22711297 AATATATTCT
* * *
22711307 GGGTGAGACCCGATGACTACGTGTGGAGAGTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
*
22711344 GGGTAAGACCCGATGACTACGTGTGGAGATTTTTTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* * *
22711381 GGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
22711418 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
22711455 GGGTAAGACCCGATAACTTCGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
22711492 G
1 G
22711493 AGCTAAAGGT
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 136 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:22715943 original size:50 final size:51
Alignment explanation
Indices: 22715880--22716009 Score: 156
Period size: 51 Copynumber: 2.6 Consensus size: 51
22715870 ATACTCAGTT
*
22715880 GCCTGCACTTAGTACTACAAACGTGACCTAA-CCATCT-GATACATGTAGTA
1 GCCTGCACTTAGTACTACACACGTGACCTAAGCCAT-TGGATACATGTAGTA
* * * * ** * *
22715930 GCCTACACTTAGTACTACACATGTGATCGAAGTTATTGGGTACGTGTAGTA
1 GCCTGCACTTAGTACTACACACGTGACCTAAGCCATTGGATACATGTAGTA
22715981 GCCTGCACTTAGTACTACACACGTGACCT
1 GCCTGCACTTAGTACTACACACGTGACCT
22716010 CACAATAGGT
Statistics
Matches: 65, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
50 27 0.42
51 38 0.58
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (51 bp):
GCCTGCACTTAGTACTACACACGTGACCTAAGCCATTGGATACATGTAGTA
Found at i:22720589 original size:49 final size:49
Alignment explanation
Indices: 22720536--22720708 Score: 211
Period size: 49 Copynumber: 3.5 Consensus size: 49
22720526 CTGGTACGCA
22720536 TAGTAGCCTGCACTTAGTACTACACATGCGACGAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACGAATTATCCGGTACACG
* * * * * * * *
22720585 TAGTAGCTTGCACTTAGTACTACACACGTGATTGACGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CGA-ATTATCCGGTACACG
* * *
22720636 TAGTAGCCTGCATTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACGAATTATCCGGTACACG
* *
22720685 TAGTAGCCTGTAGTTAGTACTACA
1 TAGTAGCCTGCACTTAGTACTACA
22720709 GACGTGACCT
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 60 0.59
50 3 0.03
51 38 0.38
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACGAATTATCCGGTACACG
Found at i:22720666 original size:100 final size:100
Alignment explanation
Indices: 22720523--22720715 Score: 314
Period size: 100 Copynumber: 1.9 Consensus size: 100
22720513 TAGCCAAAGC
* * *
22720523 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACGAATTATCCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
*
22720588 TAGCTTGCACTTAGTACTACACACGTGATTGACGT
66 TAGCCTGCACTTAGTACTACACACGTGATTGACGT
*
22720623 TATCGGGTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
* * *
22720688 TAGCCTGTAGTTAGTACTACAGACGTGA
66 TAGCCTGCACTTAGTACTACACACGTGA
22720716 CCTCACAATA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATTGACGT
Found at i:22726121 original size:13 final size:13
Alignment explanation
Indices: 22726103--22726127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22726093 GGCTATATTT
22726103 TCACACGGCCGTA
1 TCACACGGCCGTA
22726116 TCACACGGCCGT
1 TCACACGGCCGT
22726128 GTTGCCTCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
TCACACGGCCGTA
Found at i:22737372 original size:55 final size:53
Alignment explanation
Indices: 22737264--22737459 Score: 191
Period size: 55 Copynumber: 3.6 Consensus size: 53
22737254 ATTAGGGTTA
* * * * *
22737264 AAGGATACCCA-GTAAGACCATGACAAGGCGTGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATA-CCATGTAAGACCATGTCAAGACATGG-CATTGATAA-G-TTCATAAGGC
* *
22737319 AAGGATACCATGTAAGACCATGTCAAGAAATGGCATTTATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * * * *
22737374 AAAGG-TTCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
*
22737427 AAGGATACCATGTAAGACCATGTCGAGACATGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG
22737460 AAATGGTAAG
Statistics
Matches: 117, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
52 6 0.05
53 33 0.28
54 10 0.09
55 64 0.55
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:22737470 original size:108 final size:110
Alignment explanation
Indices: 22737275--22737471 Score: 274
Period size: 108 Copynumber: 1.8 Consensus size: 110
22737265 AGGATACCCA
*
22737275 GTAAGACCATGACAAGGCGTGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCAT
1 GTAAGACCATGACAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCAT
* * *
22737340 GTCAAGAAATGGCATTTATAAGTTACTATAAGGCAAAGGTTCCAT
66 GTCAAGAAATGGAAATGATAAGTTACTATAAGGCAAAGGTTCCAT
* * *
22737385 GTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACCA
1 GTAAGACCATGACAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGACCA
* * *
22737447 TGTCGAGACATGGAAATGGTAAGTT
65 TGTCAAGAAATGGAAATGATAAGTT
22737472 TCAAAAGGAT
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.61
109 7 0.09
110 20 0.26
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.23
Consensus pattern (110 bp):
GTAAGACCATGACAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCAT
GTCAAGAAATGGAAATGATAAGTTACTATAAGGCAAAGGTTCCAT
Found at i:22737613 original size:23 final size:24
Alignment explanation
Indices: 22737587--22737631 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
22737577 AATGTAAGGT
*
22737587 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
22737610 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
22737632 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:22739692 original size:13 final size:13
Alignment explanation
Indices: 22739674--22739707 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
22739664 ACCTCATTGG
22739674 ATTAAATTATTAA
1 ATTAAATTATTAA
22739687 ATTAAAATTATTAA
1 ATT-AAATTATTAA
22739701 A-TAAATT
1 ATTAAATT
22739708 GAAATTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 4 0.20
14 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTAAATTATTAA
Found at i:22739773 original size:23 final size:23
Alignment explanation
Indices: 22739744--22739788 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
22739734 TGGTCAGTCA
22739744 AAAAAAGGTATGTTAATTAATCC
1 AAAAAAGGTATGTTAATTAATCC
22739767 AAAAAAGGTATGTTAATTAATC
1 AAAAAAGGTATGTTAATTAATC
22739789 AAAGGTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.07, G:0.13, T:0.31
Consensus pattern (23 bp):
AAAAAAGGTATGTTAATTAATCC
Found at i:22747987 original size:212 final size:210
Alignment explanation
Indices: 22747364--22748172 Score: 1363
Period size: 210 Copynumber: 3.8 Consensus size: 210
22747354 AGGCCGCAAT
* *
22747364 ATAGCAGATCTCACCT-TCAGATGTTTATGCTGAAGCAGATCCAAGATGATAGATCTTATCTCTC
1 ATAGCAGATCTCACCTCT-AGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* *
22747428 TGTATTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGAAGAAGCA
65 TGTACTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
* *
22747493 AATCTAAGATAATTTGTCGTCTCTGTATTGTTAGAGAACAAATCGAAGTCTGGCATCTTCACTTT
130 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTTT
22747558 GATGGAAGGCAGACAC
195 GATGGAAGGCAGACAC
22747574 ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
1 ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
* * *
22747639 GTACTCGACAGGGAGCAAATCAAAGATATAGCTGATTTGGCTTTCATGTGTTTACGATGAAGCAA
66 GTACTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAA
* *
22747704 ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAAAAAATCAAAGTCTGGCATCTTCACTTTG
131 ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTTTG
*
22747769 ATGGAAGGCAGGCAC
196 ATGGAAGGCAGACAC
* *
22747784 ATAGCAGATCTCACCT-TCAGACGTTTACGCTGAAGTAGATCCAAGATGACAGATCTTATCTCTC
1 ATAGCAGATCTCACCTCT-AGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * *
22747848 TGTATTCAACTGGGAGCAGATCTAAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAG
65 TGTACTCGACGGGGAGCAGATC--AAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAG
22747913 CAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCAC-
128 CAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACT
*
22747977 TCGAATGGAAGGCAGACAC
193 TTG-ATGGAAGGCAGACAC
*
22747996 ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCCCT
1 ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
*
22748061 GTACTCGACGGGGAGCAGATCAAAGATATAACTGATTTGGCTTTCACGTGTTTACGATGAAGCAA
66 GTACTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAA
*
22748126 ATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAG
131 ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAG
22748173 AAGCAGATTT
Statistics
Matches: 562, Mismatches: 31, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
209 1 0.00
210 363 0.65
211 3 0.01
212 194 0.35
213 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (210 bp):
ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
GTACTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAA
ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTTTG
ATGGAAGGCAGACAC
Found at i:22748150 original size:422 final size:420
Alignment explanation
Indices: 22747364--22748168 Score: 1423
Period size: 422 Copynumber: 1.9 Consensus size: 420
22747354 AGGCCGCAAT
* * *
22747364 ATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGATAGATCTTATCTCTCT
1 ATAGCAGATCTCACCTTCAGACGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
*
22747429 GTATTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGAAGAAGCAA
66 GTATTCAACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGAAGAAGCAA
* *
22747494 ATCTAAGATAATTTGTCGTCTCTGTATTGTTAGAGAACAAATCGAAGTCTGGCATCTTCACTTTG
131 ATCTAAGATAATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTTCG
22747559 ATGGAAGGCAGACACATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGAC
196 ATGGAAGGCAGACACATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGAC
* * *
22747624 AGATCTTATCTCTCTGTACTCGACAGGGAGCAAATCAAAGATATAGCTGATTTGGCTTTCATGTG
261 AGATCTTATCTCCCTGTACTCGACAGGGAGCAAATCAAAGATATAACTGATTTGGCTTTCACGTG
*
22747689 TTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAAAAAATCAAAGTCT
326 TTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAAAAAATCAAAGTCT
22747754 GGCATCTTCACTTTGATGGAAGGCAGGCAC
391 GGCATCTTCACTTTGATGGAAGGCAGGCAC
*
22747784 ATAGCAGATCTCACCTTCAGACGTTTACGCTGAAGTAGATCCAAGATGACAGATCTTATCTCTCT
1 ATAGCAGATCTCACCTTCAGACGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
* *
22747849 GTATTCAACTGGGAGCAGATCTAAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
66 GTATTCAACGGGGAGCAGATC--AAAGATATAGCTGATTTGGCTTTCACGTGTTTACGAAGAAGC
*
22747914 AAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCAC-T
129 AAATCTAAGATAATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTT
22747978 CGAATGGAAGGCAGACACATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGAT
194 CG-ATGGAAGGCAGACACATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGAT
* *
22748043 GACAGATCTTATCTCCCTGTACTCGACGGGGAGCAGATCAAAGATATAACTGATTTGGCTTTCAC
258 GACAGATCTTATCTCCCTGTACTCGACAGGGAGCAAATCAAAGATATAACTGATTTGGCTTTCAC
*
22748108 GTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATC
323 GTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAAAAAATC
22748169 GAAGAAGCAG
Statistics
Matches: 365, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
420 80 0.22
421 2 0.01
422 283 0.78
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (420 bp):
ATAGCAGATCTCACCTTCAGACGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
GTATTCAACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGAAGAAGCAA
ATCTAAGATAATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTTCG
ATGGAAGGCAGACACATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGAC
AGATCTTATCTCCCTGTACTCGACAGGGAGCAAATCAAAGATATAACTGATTTGGCTTTCACGTG
TTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAAAAAATCAAAGTCT
GGCATCTTCACTTTGATGGAAGGCAGGCAC
Done.