Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 76 of 311
Found at i:23911698 original size:15 final size:15
Alignment explanation
Indices: 23911650--23911729 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
23911640 CAAATATAAC
*
23911650 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
23911664 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
23911679 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
*
23911694 AAGAAATCTAGAATA
1 AAGAAATCCAGAATA
* *
23911709 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
23911724 AAGAAA
1 AAGAAA
23911730 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 9 0.17
15 43 0.81
16 1 0.02
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:23911738 original size:15 final size:15
Alignment explanation
Indices: 23911661--23911738 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
23911651 AGAAAACCGA
*
23911661 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
23911676 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* *
23911690 AATAAAGAAA-TCTAG
1 -ATAAAGAAACCCAAG
* * *
23911705 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
23911721 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
23911736 ATA
1 ATA
23911739 CGATACTATG
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.90
16 2 0.04
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:23913762 original size:116 final size:116
Alignment explanation
Indices: 23913558--23913791 Score: 414
Period size: 116 Copynumber: 2.0 Consensus size: 116
23913548 AGTTTCGAAA
*
23913558 CTCGAAACCCAATTCCGTATATTTTTCCCAAAACTAGACTCATATATATATTTACTAATTATTTT
1 CTCGAAACCCAATTCCGTAAATTTTTCCCAAAACTAGACTCATATATATATTTACTAATTATTTT
23913623 CTAGAATTTTTGGTCAAGCCAATTAGTACAGTTTATTAGTTAAAAACTCCC
66 CTAGAATTTTTGGTCAAGCCAATTAGTACAGTTTATTAGTTAAAAACTCCC
** * *
23913674 CTCGAAACCCAATTCCGTAAATTTTTCCTGAAACTAGACTCGTATATATATTTACTAATTGTTTT
1 CTCGAAACCCAATTCCGTAAATTTTTCCCAAAACTAGACTCATATATATATTTACTAATTATTTT
*
23913739 CTAGAATTTTTGGTCAAGCCAATTAGTACAGTTTATTAGTTAAAATCTCCC
66 CTAGAATTTTTGGTCAAGCCAATTAGTACAGTTTATTAGTTAAAAACTCCC
23913790 CT
1 CT
23913792 GTTTTAGGGT
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 112 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (116 bp):
CTCGAAACCCAATTCCGTAAATTTTTCCCAAAACTAGACTCATATATATATTTACTAATTATTTT
CTAGAATTTTTGGTCAAGCCAATTAGTACAGTTTATTAGTTAAAAACTCCC
Found at i:23914931 original size:93 final size:93
Alignment explanation
Indices: 23914819--23914990 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
23914809 GCCCATAAGT
* * *
23914819 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
23914884 CGAGCTCGGATGCCTACTTACATCTCTC
66 CGAGCTCGGATGCCTACTTACATCTCTC
*
23914912 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* **
23914977 TGATTTCGGATGCC
66 CGAGCTCGGATGCC
23914991 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTACTTACATCTCTC
Found at i:23914986 original size:46 final size:46
Alignment explanation
Indices: 23914811--23914976 Score: 194
Period size: 46 Copynumber: 3.6 Consensus size: 46
23914801 TGTAACCCGC
* *
23914811 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
23914857 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTACTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
23914903 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
23914950 CCATAAGTGAACTCAGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
23914977 TGATTTCGGA
Statistics
Matches: 100, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 59 0.59
47 32 0.32
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:23922144 original size:80 final size:79
Alignment explanation
Indices: 23922018--23922176 Score: 309
Period size: 80 Copynumber: 2.0 Consensus size: 79
23922008 ATCTTTGAAA
23922018 GTTTCGTGTGGAAATTTTATCATTTGCGTGCTTAATTTGAAGAAAAAAAAGACTTAATCGCGTAA
1 GTTTCGTGTGGAAATTTTATCATTTGCGTGCTTAATTTGAA-AAAAAAAAGACTTAATCGCGTAA
23922083 AATGTAAAAGTGGCT
65 AATGTAAAAGTGGCT
23922098 GTTTCGTGTGGAAATTTTATCATTTGCGTGCTTAATTTGAAAAAAAAAAGACTTAATCGCGTAAA
1 GTTTCGTGTGGAAATTTTATCATTTGCGTGCTTAATTTGAAAAAAAAAAGACTTAATCGCGTAAA
23922163 ATGTAAAAGTGGCT
66 ATGTAAAAGTGGCT
23922177 AGCCATTTGT
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
79 38 0.48
80 41 0.52
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (79 bp):
GTTTCGTGTGGAAATTTTATCATTTGCGTGCTTAATTTGAAAAAAAAAAGACTTAATCGCGTAAA
ATGTAAAAGTGGCT
Found at i:23930074 original size:40 final size:40
Alignment explanation
Indices: 23930016--23930251 Score: 240
Period size: 40 Copynumber: 5.9 Consensus size: 40
23930006 ATATCCCCTA
* * * *
23930016 AATGCACATACATACCCCTATTTGTAGTTTGGTACCCTTG
1 AATGCACATACGTGCCCCTATTTGTACTTCGGTACCCTTG
* * * *
23930056 AATGCACATACGTGCCCCTGTTTGTATTTCGGTTCCCTCG
1 AATGCACATACGTGCCCCTATTTGTACTTCGGTACCCTTG
* * * *
23930096 AATGCACATACGCGCCCCTACTTGTACTTCGGTACCCCTA
1 AATGCACATACGTGCCCCTATTTGTACTTCGGTACCCTTG
* * * * **
23930136 AACGCACATACATTCCCTTATTTGTACTTCAATACCCTTG
1 AATGCACATACGTGCCCCTATTTGTACTTCGGTACCCTTG
* * *
23930176 AATGCACATACGTGCCCCTGTATGTACTTCAGTACTCC-TG
1 AATGCACATACGTGCCCCTATTTGTACTTCGGTAC-CCTTG
* * *
23930216 CATGCACATACGTGCCCCTATTTATATTTCGGTACC
1 AATGCACATACGTGCCCCTATTTGTACTTCGGTACC
23930252 TCTAATCGCG
Statistics
Matches: 157, Mismatches: 38, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 154 0.98
41 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (40 bp):
AATGCACATACGTGCCCCTATTTGTACTTCGGTACCCTTG
Found at i:23930223 original size:120 final size:120
Alignment explanation
Indices: 23930010--23930256 Score: 325
Period size: 120 Copynumber: 2.1 Consensus size: 120
23930000 AAGAAAATAT
* * ***
23930010 CCCCTAAATGCACATACATACCCCTATTTGTAGTTTGGTACCCTTGAATGCACATACGTGCCCCT
1 CCCCTAAACGCACATACATACCCCTATTTGTACTTCAATACCCTTGAATGCACATACGTGCCCCT
* * * * *
23930075 GTTTGTATTTCGGTTCCCTCGAATGCACATACGCGCCCCTACTTGTACTTCGGTA
66 GTATGTACTTCAGTACCCTCGAATGCACATACGCGCCCCTACTTATACTTCGGTA
* *
23930130 CCCCTAAACGCACATACATTCCCTTATTTGTACTTCAATACCCTTGAATGCACATACGTGCCCCT
1 CCCCTAAACGCACATACATACCCCTATTTGTACTTCAATACCCTTGAATGCACATACGTGCCCCT
* * * *
23930195 GTATGTACTTCAGTACTCCT-GCATGCACATACGTGCCCCTATTTATATTTCGGTA
66 GTATGTACTTCAGTAC-CCTCGAATGCACATACGCGCCCCTACTTATACTTCGGTA
*
23930250 CCTCTAA
1 CCCCTAA
23930257 TCGCGCATTC
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
120 106 0.97
121 3 0.03
ACGTcount: A:0.23, C:0.31, G:0.14, T:0.32
Consensus pattern (120 bp):
CCCCTAAACGCACATACATACCCCTATTTGTACTTCAATACCCTTGAATGCACATACGTGCCCCT
GTATGTACTTCAGTACCCTCGAATGCACATACGCGCCCCTACTTATACTTCGGTA
Found at i:23932808 original size:34 final size:34
Alignment explanation
Indices: 23932742--23932808 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
23932732 CCGGAAAATA
* *
23932742 TTAAGTTCTGTTTGAATGATGAATTTTAATGGAG
1 TTAAGTTCCGTTTGAATGATGAATTTCAATGGAG
*
23932776 TTAAGTTCCGTTTGAATGATGAATTTCGATGGA
1 TTAAGTTCCGTTTGAATGATGAATTTCAATGGA
23932809 TATATGTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.42
Consensus pattern (34 bp):
TTAAGTTCCGTTTGAATGATGAATTTCAATGGAG
Found at i:23934350 original size:38 final size:38
Alignment explanation
Indices: 23934305--23934407 Score: 152
Period size: 38 Copynumber: 2.7 Consensus size: 38
23934295 TTAAACTCAG
* * *
23934305 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCTGA
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGA
* *
23934343 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGA
*
23934381 ATATATTACCAGCACAAAGCCTGCGGG
1 ATATAATACCAGCACAAAGCCTGCGGG
23934408 TCTTTAAGCC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.20
Consensus pattern (38 bp):
ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGA
Found at i:23938591 original size:28 final size:28
Alignment explanation
Indices: 23938558--23938640 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
23938548 CCACTGACCG
23938558 ATCTCGCACACATAGTGCTCGATTGAAGA
1 ATCTCGCACACATAGTGCTCGATT-AAGA
* **
23938587 A-CTCGCACACATAGTGCCTCAATTACTA
1 ATCTCGCACACATAGTG-CTCGATTAAGA
* *
23938615 ATCTTGCACACATAGTGCTCGGTTAA
1 ATCTCGCACACATAGTGCTCGATTAA
23938641 AGGAATTTGC
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
28 24 0.53
29 21 0.47
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (28 bp):
ATCTCGCACACATAGTGCTCGATTAAGA
Found at i:23938882 original size:43 final size:43
Alignment explanation
Indices: 23938821--23939124 Score: 491
Period size: 43 Copynumber: 7.1 Consensus size: 43
23938811 TGCTCGAATT
** *
23938821 ACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* *
23938864 ACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACATATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* * *
23938907 ACTGGCACAAAACCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* *
23938950 ACCGGCACGAAGCCTGCTAGGCATGAAGGCCCAAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
*
23938993 ACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* *
23939036 ACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACATATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
23939079 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
23939122 ACC
1 ACC
23939125 AAGTTTTCAT
Statistics
Matches: 240, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 240 1.00
ACGTcount: A:0.32, C:0.33, G:0.23, T:0.12
Consensus pattern (43 bp):
ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
Found at i:23940771 original size:38 final size:38
Alignment explanation
Indices: 23940674--23940823 Score: 158
Period size: 38 Copynumber: 3.9 Consensus size: 38
23940664 CGAGGTATAA
* * * * *
23940674 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGGA-TTT
* * *
23940713 AAACTC-AGATATAATACCAGCACTAGGCCTGCGGGATTT
1 -AACCCGA-ATATAATACCAGCACAAAGCCTGCGGGATTT
* *
23940752 AACCCGAATATAATACCAGCACGAAGCCTGCGAGATTT
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGGATTT
* *
23940790 AACCCGGATATATTACCAGCACAAAGCCTGCGGG
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGG
23940824 TCTTTAAGCC
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
38 62 0.66
39 5 0.05
40 27 0.29
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.17
Consensus pattern (38 bp):
AACCCGAATATAATACCAGCACAAAGCCTGCGGGATTT
Found at i:23940819 original size:76 final size:78
Alignment explanation
Indices: 23940674--23940823 Score: 196
Period size: 78 Copynumber: 1.9 Consensus size: 78
23940664 CGAGGTATAA
* * * *
23940674 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAG
1 AACCCAAACATAACACCAGCACGAAGCCTACGAGACTTTAAACCCAGATATAATACCAGCACAAA
23940739 GCCTGCGGGATTT
66 GCCTGCGGGATTT
* * * * * *
23940752 AACCCGAATATAATACCAGCACGAAGCCTGCGAGA-TTT-AACCCGGATATATTACCAGCACAAA
1 AACCCAAACATAACACCAGCACGAAGCCTACGAGACTTTAAACCCAGATATAATACCAGCACAAA
23940815 GCCTGCGGG
66 GCCTGCGGG
23940824 TCTTTAAGCC
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
76 29 0.47
77 3 0.05
78 30 0.48
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.17
Consensus pattern (78 bp):
AACCCAAACATAACACCAGCACGAAGCCTACGAGACTTTAAACCCAGATATAATACCAGCACAAA
GCCTGCGGGATTT
Found at i:23945452 original size:21 final size:21
Alignment explanation
Indices: 23945423--23945486 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 21
23945413 TTCGGGTGGA
23945423 TTAGCTCTTACGAGCTTCTGT
1 TTAGCTCTTACGAGCTTCTGT
* *
23945444 TTAGTTCTTACGAG-TTGTTGT
1 TTAGCTCTTACGAGCTT-CTGT
*
23945465 TCAGCTCTTACGAGCTTCTGT
1 TTAGCTCTTACGAGCTTCTGT
23945486 T
1 T
23945487 GGCATTTTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 2 0.06
21 32 0.89
22 2 0.06
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.45
Consensus pattern (21 bp):
TTAGCTCTTACGAGCTTCTGT
Found at i:23945704 original size:26 final size:26
Alignment explanation
Indices: 23945646--23945696 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
23945636 ATGAATTATC
*
23945646 GATTGAAGTTGTGAATGACAAGTTTT
1 GATTGAAGTTATGAATGACAAGTTTT
23945672 GATTGAAGTTATGAATGACAAGTTT
1 GATTGAAGTTATGAATGACAAGTTT
23945697 CTTTTGAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
GATTGAAGTTATGAATGACAAGTTTT
Found at i:23948438 original size:34 final size:33
Alignment explanation
Indices: 23948392--23948470 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 33
23948382 AGTTGTATTC
* * *
23948392 TCTTTTCTTTTGAGTTCTTTCCAGATACCTTTT
1 TCTTTTCCTTTGAGTTCTTGCCAGACACCTTTT
*
23948425 TCTTCTTCCTTTGAGTTCTTGCTAGACACCTTTT
1 TCTT-TTCCTTTGAGTTCTTGCCAGACACCTTTT
23948459 TCTTATTCCTTT
1 TCTT-TTCCTTT
23948471 TTGTCATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 4 0.10
34 36 0.90
ACGTcount: A:0.11, C:0.24, G:0.09, T:0.56
Consensus pattern (33 bp):
TCTTTTCCTTTGAGTTCTTGCCAGACACCTTTT
Found at i:23949737 original size:27 final size:26
Alignment explanation
Indices: 23949707--23949969 Score: 264
Period size: 27 Copynumber: 9.8 Consensus size: 26
23949697 ATCTCGGTTC
*
23949707 GTAAAATTACTGAAATACCCTCGATTT
1 GTAAAATTACTGAAATACCC-CAATTT
* * *
23949734 GTAAAATTACTAAAATAACCACGATTT
1 GTAAAATTACTGAAAT-ACCCCAATTT
* *
23949761 GTAAAATTA-TCGAAGTACCCCCAGTTT
1 GTAAAATTACT-GAAATA-CCCCAATTT
23949788 GTAAAATTA-TCGAAATACCCCTAATTT
1 GTAAAATTACT-GAAATACCCC-AATTT
23949815 GTAAAATTACTGAAATACCACCAATTT
1 GTAAAATTACTGAAATACC-CCAATTT
**
23949842 GTAAAATTA-TCGAAATACCCTCGGTTT
1 GTAAAATTACT-GAAATACCC-CAATTT
*
23949869 GTAAAATTATTGAAATACCCCTAATTT
1 GTAAAATTACTGAAATACCCC-AATTT
*
23949896 GTAAAATT-CTTGAAATACTCCCAGTTT
1 GTAAAATTAC-TGAAATAC-CCCAATTT
*
23949923 GTAAAATTACTAAAATACCCCCAATTT
1 GTAAAATTACTGAAATA-CCCCAATTT
* *
23949950 TTGAAATTACTGAAATACCC
1 GTAAAATTACTGAAATACCC
23949970 TTGTAGTGTA
Statistics
Matches: 202, Mismatches: 20, Indels: 29
0.80 0.08 0.12
Matches are distributed among these distances:
26 12 0.06
27 178 0.88
28 12 0.06
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (26 bp):
GTAAAATTACTGAAATACCCCAATTT
Found at i:23949842 original size:81 final size:81
Alignment explanation
Indices: 23949707--23949969 Score: 306
Period size: 81 Copynumber: 3.2 Consensus size: 81
23949697 ATCTCGGTTC
* * *
23949707 GTAAAATTA-CTGAAATA-CCCTCGATTTGTAAAATTACTAAAATAACCA-CGATTTGTAAAATT
1 GTAAAATTATC-GAAATACCCCT-AATTTGTAAAATTACTGAAAT-ACCACCAATTTGTAAAATT
*
23949769 ATCGAAGTACCCCCAGTTT
63 ATCGAAATACCCCCAGTTT
23949788 GTAAAATTATCGAAATACCCCTAATTTGTAAAATTACTGAAATACCACCAATTTGTAAAATTATC
1 GTAAAATTATCGAAATACCCCTAATTTGTAAAATTACTGAAATACCACCAATTTGTAAAATTATC
* *
23949853 GAAATACCCTCGGTTT
66 GAAATACCCCCAGTTT
* *
23949869 GTAAAATTATTGAAATACCCCTAATTTGTAAAATT-CTTGAAATACTC-CCAGTTTGTAAAATTA
1 GTAAAATTATCGAAATACCCCTAATTTGTAAAATTAC-TGAAATAC-CACCAATTTGTAAAATTA
* *
23949932 -CTAAAATACCCCCAATTT
64 TC-GAAATACCCCCAGTTT
* *
23949950 TTGAAATTA-CTGAAATACCC
1 GTAAAATTATC-GAAATACCC
23949970 TTGTAGTGTA
Statistics
Matches: 160, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
80 6 0.04
81 148 0.93
82 6 0.04
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
GTAAAATTATCGAAATACCCCTAATTTGTAAAATTACTGAAATACCACCAATTTGTAAAATTATC
GAAATACCCCCAGTTT
Found at i:23951915 original size:16 final size:16
Alignment explanation
Indices: 23951896--23951927 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23951886 AATTGTTTTA
23951896 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
23951912 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
23951928 ACTCCGTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:23952253 original size:51 final size:49
Alignment explanation
Indices: 23952126--23952467 Score: 251
Period size: 49 Copynumber: 6.9 Consensus size: 49
23952116 ACCGAAGCTC
* * * * **
23952126 TCTGGTA-GCATAGTAGCCTACACTTAGTACTACACACATGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC-GAATTA
* *
23952175 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CGAA-TTA
* * ** * * * ** *
23952226 GCGGGTATGCATAGTAGCCTGCACTTAGTGCTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACGAAT-TA
* * **
23952276 TCTGGTACACGTAGTAG-CTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC-GAATTA
* * * *
23952325 TTTGATACACGTAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CGAA-TT-A
* * * * * ** *
23952377 AC-GGTACGCATAGAAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACGAAT-TA
* *
23952426 TC-GATACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC
23952468 TCACAACAGA
Statistics
Matches: 226, Mismatches: 57, Indels: 20
0.75 0.19 0.07
Matches are distributed among these distances:
49 82 0.36
50 75 0.33
51 68 0.30
52 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACGAATTA
Found at i:23952254 original size:101 final size:99
Alignment explanation
Indices: 23952129--23952316 Score: 277
Period size: 101 Copynumber: 1.9 Consensus size: 99
23952119 GAAGCTCTCT
* * *
23952129 GGTAGCATAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCC
1 GGTAGCATAGTAGCCTACACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAG-C
23952194 TGCACTTAGTACTACACACGTGATCGAAGTTAGCG
65 TGCACTTAGTACTACACACGTGATCGAAGTTAGCG
* * ** * *
23952229 GGTATGCATAGTAGCCTGCACTTAGTGCTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTA-GCATAGTAGCCTACACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGC
23952294 TGCACTTAGTACTACACACGTGA
65 TGCACTTAGTACTACACACGTGA
23952317 CTTAACCATT
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 28 0.36
101 50 0.64
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (99 bp):
GGTAGCATAGTAGCCTACACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGCT
GCACTTAGTACTACACACGTGATCGAAGTTAGCG
Found at i:23952309 original size:49 final size:49
Alignment explanation
Indices: 23952136--23952463 Score: 264
Period size: 50 Copynumber: 6.6 Consensus size: 49
23952126 TCTGGTAGCA
* ** * * *
23952136 TAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATC-GATACACG
* ** * * * ** *
23952186 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT-TAGCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCTA-TCAATC-GATACACG
* * *
23952237 TAGTAGCCTGCACTTAGTGCTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATC-GATACACG
* * * * *
23952287 TAGTAG-CTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCT-ATCAATCGATACACG
* * ** * * * * *
23952336 TAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAAACGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCTA-TCAATCGATACACG
* *
23952387 TAGAAGCCTGCACTTAGTACTACACATGCGACCTATCAATCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCGATACACG
23952436 TAGTAGCCTGCACTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
23952464 TGACTCACAA
Statistics
Matches: 216, Mismatches: 55, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
49 72 0.33
50 74 0.34
51 70 0.32
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCGATACACG
Found at i:23952363 original size:150 final size:150
Alignment explanation
Indices: 23952136--23952468 Score: 553
Period size: 150 Copynumber: 2.2 Consensus size: 150
23952126 TCTGGTAGCA
* *
23952136 TAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
* * * * *
23952201 AGTACTACACACGTGATCGAAGTT-AGCGGGTATGCATAGTAGCCTGCACTTAGTGCTACACATG
66 AGCACTACACACGTGATCGAAGTTAAAC-GGTACGCATAGAAGCCTGCACTTAGTACTACACATG
*
23952265 CGACCTATCAATCTGGTACACG
130 CGACCTATCAATC-GATACACG
*
23952287 TAGTAG-CTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
23952351 AGCACTACACACGTGATCGAAGTTAAACGGTACGCATAGAAGCCTGCACTTAGTACTACACATGC
66 AGCACTACACACGTGATCGAAGTTAAACGGTACGCATAGAAGCCTGCACTTAGTACTACACATGC
23952416 GACCTATCAATCGATACACG
131 GACCTATCAATCGATACACG
23952436 TAGTAGCCTGCACTTAGTACTACACACGTGACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACT
23952469 CACAACAGAT
Statistics
Matches: 171, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
149 13 0.08
150 150 0.88
151 8 0.05
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (150 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
AGCACTACACACGTGATCGAAGTTAAACGGTACGCATAGAAGCCTGCACTTAGTACTACACATGC
GACCTATCAATCGATACACG
Found at i:23952844 original size:19 final size:20
Alignment explanation
Indices: 23952816--23952862 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
23952806 AAGAACATGT
23952816 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
23952837 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
23952856 TATATAT
1 TATATAT
23952863 ATTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:23956113 original size:24 final size:23
Alignment explanation
Indices: 23956086--23956130 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
23956076 AATGGACTAA
23956086 GGAGAAAATCAAGGAGAAGATTGG
1 GGAGAAAATCAAGGAG-AGATTGG
* *
23956110 GGAGGAAATCATGGAGAGATT
1 GGAGAAAATCAAGGAGAGATT
23956131 TTAGGAGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.42, C:0.04, G:0.38, T:0.16
Consensus pattern (23 bp):
GGAGAAAATCAAGGAGAGATTGG
Found at i:23957814 original size:23 final size:23
Alignment explanation
Indices: 23957784--23957835 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
23957774 GGCTCTAGCC
23957784 CAGACTATTTCTGTTTCTGTATA
1 CAGACTATTTCTGTTTCTGTATA
23957807 CAGACTATTTCTGTTTCTGTATA
1 CAGACTATTTCTGTTTCTGTATA
*
23957830 CTGACT
1 CAGACT
23957836 GTTACTCTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.46
Consensus pattern (23 bp):
CAGACTATTTCTGTTTCTGTATA
Found at i:23962121 original size:12 final size:12
Alignment explanation
Indices: 23962089--23962125 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
23962079 ATTAAGATTG
*
23962089 CTCATTGAACTT
1 CTCATTGAACTA
23962101 CTC-TTGAACTA
1 CTCATTGAACTA
23962112 CTCATTGAAC-A
1 CTCATTGAACTA
23962123 CTC
1 CTC
23962126 GGAATACTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (12 bp):
CTCATTGAACTA
Found at i:23962716 original size:31 final size:31
Alignment explanation
Indices: 23962629--23962708 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
23962619 CTTCCTGCAT
* * * *
23962629 TAAAATCCAACCAAATACAACAAATATAGCA
1 TAAAATACAACCAAAAACAACTAATTTAGCA
*
23962660 TAAAATGCAACCAAAAACAACTAATTTAGCA
1 TAAAATACAACCAAAAACAACTAATTTAGCA
23962691 TAAAAATACAACCAAAAA
1 T-AAAATACAACCAAAAA
23962709 TATTAATTCT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 28 0.65
32 15 0.35
ACGTcount: A:0.60, C:0.20, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAACTAATTTAGCA
Found at i:23962955 original size:21 final size:21
Alignment explanation
Indices: 23962931--23963017 Score: 88
Period size: 21 Copynumber: 4.1 Consensus size: 21
23962921 TTTTACTCTG
*
23962931 CTCTGCTTCCATCGCTGCTGC
1 CTCTGCCTCCATCGCTGCTGC
*
23962952 CTCTGCCTCCCA-CACT-CGTGC
1 CTCTGCCT-CCATCGCTGC-TGC
*
23962973 CTCTGCCTCCCTCGCTGCTGC
1 CTCTGCCTCCATCGCTGCTGC
* * *
23962994 CGCTGCCTCCCTCTCTGCTGC
1 CTCTGCCTCCATCGCTGCTGC
23963015 CTC
1 CTC
23963018 AGCTCTAAGT
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
20 3 0.05
21 48 0.87
22 4 0.07
ACGTcount: A:0.03, C:0.51, G:0.17, T:0.29
Consensus pattern (21 bp):
CTCTGCCTCCATCGCTGCTGC
Found at i:23963457 original size:13 final size:14
Alignment explanation
Indices: 23963432--23963460 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23963422 TGATGAATTG
23963432 AATTAAACAATTAT
1 AATTAAACAATTAT
23963446 AATTAAAC-ATTAT
1 AATTAAACAATTAT
23963459 AA
1 AA
23963461 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:23963644 original size:18 final size:18
Alignment explanation
Indices: 23963612--23963649 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
23963602 TACAATATAG
23963612 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
23963631 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
23963648 TA
1 TA
23963650 TTTGAAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:23968687 original size:9 final size:9
Alignment explanation
Indices: 23968648--23968957 Score: 267
Period size: 9 Copynumber: 35.2 Consensus size: 9
23968638 TATTTAAGTA
*
23968648 TTATGTAAG
1 TTATATAAG
*
23968657 TTATGATATG
1 TTAT-ATAAG
* *
23968667 ATATAT-AT
1 TTATATAAG
*
23968675 TTATGTAAG
1 TTATATAAG
*
23968684 TTATAT-AT
1 TTATATAAG
*
23968692 TTATCTAAG
1 TTATATAAG
*
23968701 TTCTATAAG
1 TTATATAAG
*
23968710 TTATGTAAG
1 TTATATAAG
*
23968719 TTATGTAAG
1 TTATATAAG
*
23968728 TTATAT-AT
1 TTATATAAG
*
23968736 TTATCTAAG
1 TTATATAAG
23968745 TTATATAAG
1 TTATATAAG
*
23968754 TTATGTAAG
1 TTATATAAG
*
23968763 TTATGTAAG
1 TTATATAAG
*
23968772 TTATAT-AT
1 TTATATAAG
*
23968780 TTATCTAAG
1 TTATATAAG
23968789 TTATATAAG
1 TTATATAAG
*
23968798 TTATGTAAG
1 TTATATAAG
*
23968807 TTATGTAAG
1 TTATATAAG
*
23968816 TTATAT-AT
1 TTATATAAG
*
23968824 TTATCTAAG
1 TTATATAAG
23968833 TTATATAAG
1 TTATATAAG
*
23968842 TTATCTAAG
1 TTATATAAG
*
23968851 TTATGTAAG
1 TTATATAAG
*
23968860 TTATAT-AT
1 TTATATAAG
*
23968868 TTATCTAAG
1 TTATATAAG
*
23968877 TTATGTAAG
1 TTATATAAG
*
23968886 TTATAT-AT
1 TTATATAAG
*
23968894 TTATCTAAG
1 TTATATAAG
*
23968903 TTATGTAAG
1 TTATATAAG
*
23968912 TTGTATAAG
1 TTATATAAG
*
23968921 TTATAT-AT
1 TTATATAAG
*
23968929 TTATCTAAG
1 TTATATAAG
23968938 TTATATAAG
1 TTATATAAG
*
23968947 TTATGTAAG
1 TTATATAAG
23968956 TT
1 TT
23968958 TTGTAAGTAA
Statistics
Matches: 239, Mismatches: 53, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
8 46 0.19
9 187 0.78
10 6 0.03
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATATAAG
Found at i:23968714 original size:35 final size:35
Alignment explanation
Indices: 23968706--23968965 Score: 157
Period size: 35 Copynumber: 7.7 Consensus size: 35
23968696 CTAAGTTCTA
*
23968706 TAAGTTATGTAAGTTATGTAAGTTATATATTTATC
1 TAAGTTATATAAGTTATGTAAGTTATATATTTATC
* * *
23968741 TAAGTTATATAAGTTATGTAAGTTATGTAAGTTATA
1 TAAGTTATATAAGTTATGTAAGTTATAT-ATTTATC
* * * * * *
23968777 T-ATTTATCTAAGTTATATAAGTTATGTAAGTTATG
1 TAAGTTATATAAGTTATGTAAGTTATAT-ATTTATC
* *
23968812 TAAGTTATAT-ATTTATCTAAG---T-TA--TA--
1 TAAGTTATATAAGTTATGTAAGTTATATATTTATC
*
23968838 TAAGTTATCTAAGTTATGTAAGTTATATATTTATC
1 TAAGTTATATAAGTTATGTAAGTTATATATTTATC
* * * * * *
23968873 TAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATG
1 TAAGTTATATAAGTTATGTAAGTTATAT-ATTTATC
* * * * * *
23968908 TAAGTTGTATAAGTTATAT-ATTTATCTAAGTTATA
1 TAAGTTATATAAGTTATGTAAGTTATAT-ATTTATC
* *
23968943 TAAGTTATGTAAGTTTTGTAAGT
1 TAAGTTATATAAGTTATGTAAGT
23968966 AATGTTAAAT
Statistics
Matches: 183, Mismatches: 29, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
26 9 0.05
27 9 0.05
28 2 0.01
30 2 0.01
31 3 0.02
32 1 0.01
33 2 0.01
34 6 0.03
35 135 0.74
36 14 0.08
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.48
Consensus pattern (35 bp):
TAAGTTATATAAGTTATGTAAGTTATATATTTATC
Found at i:23968724 original size:44 final size:44
Alignment explanation
Indices: 23968675--23968950 Score: 412
Period size: 44 Copynumber: 6.3 Consensus size: 44
23968665 TGATATATAT
*
23968675 TTATGTAAGTTATATATTTATCTAAGTTCTATAAGTTATGTAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
23968719 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
23968763 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
*
23968807 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATCTAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
* * *
23968851 TTATGTAAGTTATATATTTATCTAAGTTATGTAAGTTATAT-AT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
* * * * * * *
23968894 TTATCTAAGTTATGTAAGTTGTATAAGTTATAT-ATTTATCTAAG
1 TTATGTAAGTTATAT-ATTTATCTAAGTTATATAAGTTATGTAAG
*
23968938 TTATATAAGTTAT
1 TTATGTAAGTTAT
23968951 GTAAGTTTTG
Statistics
Matches: 215, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
43 20 0.09
44 195 0.91
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.49
Consensus pattern (44 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
Found at i:23968951 original size:44 final size:44
Alignment explanation
Indices: 23968653--23968965 Score: 231
Period size: 44 Copynumber: 7.3 Consensus size: 44
23968643 AAGTATTATG
* * * *
23968653 TAAGTTATGATATGATATATATTTATGTAAGTTATAT-ATTTATC
1 TAAGTTATG-TAAGTTATATATTTATCTAAGTTATATAAGTTATC
* * * * * *
23968697 TAAGTTCTATAAGTTATGTAAGTTATGTAAGTTATAT-ATTTATC
1 TAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATATAAGTTATC
* * * * *
23968741 TAAGTTATATAAGTTATGTAAGTTATGTAAGTTATAT-ATTTATC
1 TAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATATAAGTTATC
* * * * *
23968785 TAAGTTATATAAGTTATGTAAGTTATGTAAGTTATAT-ATTTATC
1 TAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATATAAGTTATC
* * * * *
23968829 TAAGTTATATAAGTTATCTAAGTTATGTAAGTTATAT-ATTTATC
1 TAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATATAAGTTATC
*
23968873 TAAGTTATGTAAGTTATATATTTATCTAAGTTATGTAAG---T-
1 TAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATC
*
23968913 T--G-TA--TAAGTTATATATTTATCTAAGTTATATAAGTTATG
1 TAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATC
*
23968952 TAAGTTTTGTAAGT
1 TAAGTTATGTAAGT
23968966 AATGTTAAAT
Statistics
Matches: 242, Mismatches: 16, Indels: 22
0.86 0.06 0.08
Matches are distributed among these distances:
35 29 0.12
37 2 0.01
38 2 0.01
39 1 0.00
40 1 0.00
41 2 0.01
42 1 0.00
43 21 0.09
44 183 0.76
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.48
Consensus pattern (44 bp):
TAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATC
Found at i:23969113 original size:29 final size:29
Alignment explanation
Indices: 23969081--23969150 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
23969071 TAAATTGCGG
* *
23969081 ATTAAATAATATTTATAAAAATTATTTTA
1 ATTAAATAATATTGAAAAAAATTATTTTA
*
23969110 ATTAAATAATACTGAAAAAAATTATTTTA
1 ATTAAATAATATTGAAAAAAATTATTTTA
*
23969139 ATTCAATAATAT
1 ATTAAATAATAT
23969151 ACACGTCGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (29 bp):
ATTAAATAATATTGAAAAAAATTATTTTA
Found at i:23969354 original size:24 final size:24
Alignment explanation
Indices: 23969322--23969368 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
23969312 TTAACTTAAA
* *
23969322 TGATAAAACGGGCGATAATATTTG
1 TGATAAAACGGACGAGAATATTTG
23969346 TGATAAAACGGACGAGAATATTT
1 TGATAAAACGGACGAGAATATTT
23969369 CAATAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (24 bp):
TGATAAAACGGACGAGAATATTTG
Found at i:23969485 original size:64 final size:64
Alignment explanation
Indices: 23969416--23969549 Score: 241
Period size: 64 Copynumber: 2.1 Consensus size: 64
23969406 ATATTTTATT
* *
23969416 AAATATTTTTATATTAGATGGGACATATTATATTAATAAATAAATTTATTAAAAATCATGATAG
1 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCATGATAG
*
23969480 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCATGATAG
23969544 AAATAT
1 AAATAT
23969550 AGAAATATTA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.47, C:0.04, G:0.10, T:0.39
Consensus pattern (64 bp):
AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCATGATAG
Found at i:23970345 original size:7 final size:7
Alignment explanation
Indices: 23970333--23970365 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
23970323 ACATATAAAC
23970333 GCAAAAA
1 GCAAAAA
23970340 GCAAAAA
1 GCAAAAA
23970347 GCAAAAA
1 GCAAAAA
23970354 GCAAAAA
1 GCAAAAA
23970361 GCAAA
1 GCAAA
23970366 TCTATAAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.70, C:0.15, G:0.15, T:0.00
Consensus pattern (7 bp):
GCAAAAA
Found at i:23972252 original size:20 final size:20
Alignment explanation
Indices: 23972229--23972273 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
23972219 TTCGATTCGA
*
23972229 GGAAATATTTAGGGATTAGG
1 GGAAATAGTTAGGGATTAGG
*
23972249 GGAAA-AGTTAGGGATTTGG
1 GGAAATAGTTAGGGATTAGG
23972268 GGAAAT
1 GGAAAT
23972274 TTGGGTAGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.27
Consensus pattern (20 bp):
GGAAATAGTTAGGGATTAGG
Found at i:23972631 original size:75 final size:74
Alignment explanation
Indices: 23972552--23972760 Score: 194
Period size: 73 Copynumber: 2.8 Consensus size: 74
23972542 AAACCTTAAT
23972552 ACAAATTTGTGGCGTTTTATATAAAGCGCCACTAAAAACAAAGAATAAAACGGTGCCGTTTTGAA
1 ACAAATTTGTGGCGTTTT-TATAAAGCGCCACTAAAAACAAAGAATAAAACGGTGCCGTTTTGAA
23972617 AACACATAAC
65 AACACATAAC
* * * * * * * *
23972627 ACAAATTTGCGGCGTTTTTGTCAAAGCGCCACCAATAAC-AAGGAT-AAACAGTGTCGTTTCT-T
1 ACAAATTTGTGGCGTTTTTAT-AAAGCGCCACTAAAAACAAAGAATAAAACGGTGCCGTTT-TGA
* * *
23972689 AAACTCGTAAT
64 AAACACATAAC
** * * * *
23972700 ACATTTTTGTGGCGTTTGTACAAAGCGCCACTAAAAA-AAA-ACATAGAACGGTGCCATTTTG
1 ACAAATTTGTGGCGTTTTTATAAAGCGCCACTAAAAACAAAGA-ATAAAACGGTGCCGTTTTG
23972761 CTACTAATGT
Statistics
Matches: 104, Mismatches: 24, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
72 19 0.18
73 45 0.43
74 8 0.08
75 32 0.31
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (74 bp):
ACAAATTTGTGGCGTTTTTATAAAGCGCCACTAAAAACAAAGAATAAAACGGTGCCGTTTTGAAA
ACACATAAC
Found at i:23973519 original size:29 final size:29
Alignment explanation
Indices: 23973487--23973544 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
23973477 TTAGAGTTTA
23973487 GATCATGGGTTATGATTTAGGGGTTAGGC
1 GATCATGGGTTATGATTTAGGGGTTAGGC
23973516 GATCATGGGTTATGATTTAGGGGTTAGGC
1 GATCATGGGTTATGATTTAGGGGTTAGGC
23973545 TTTATATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.07, G:0.38, T:0.34
Consensus pattern (29 bp):
GATCATGGGTTATGATTTAGGGGTTAGGC
Found at i:23974228 original size:41 final size:41
Alignment explanation
Indices: 23974063--23974238 Score: 166
Period size: 41 Copynumber: 4.3 Consensus size: 41
23974053 ATAATAAATA
* * **
23974063 TTAGCGGCGCTTTT--ACAAAAACGCCACTATAGCTCTACCTT
1 TTAGCGGCG-TTTTGGATAAAAACGCCACTATTGCTC-AGTTT
*
23974104 TT-GTGGCG-TTTGGA-AATAAAGCGCCACTATAT-CTCAGTTT
1 TTAGCGGCGTTTTGGATAA-AAA-CGCCACTAT-TGCTCAGTTT
* * * *
23974144 TTTGCGGCGTTTTGGATGAAAACACCACTATTACTCAGTTT
1 TTAGCGGCGTTTTGGATAAAAACGCCACTATTGCTCAGTTT
23974185 TTAGCGGCGTTTTGGATAAAAACGCCACTATTGCTCAGTTT
1 TTAGCGGCGTTTTGGATAAAAACGCCACTATTGCTCAGTTT
* *
23974226 TTAACGGTGTTTT
1 TTAGCGGCGTTTT
23974239 TGTTTCAAAC
Statistics
Matches: 113, Mismatches: 13, Indels: 18
0.78 0.09 0.12
Matches are distributed among these distances:
38 3 0.03
39 2 0.02
40 15 0.13
41 83 0.73
42 9 0.08
43 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (41 bp):
TTAGCGGCGTTTTGGATAAAAACGCCACTATTGCTCAGTTT
Found at i:23992464 original size:27 final size:27
Alignment explanation
Indices: 23992434--23992948 Score: 574
Period size: 27 Copynumber: 19.1 Consensus size: 27
23992424 AGTACTCCCA
*
23992434 ATTTACAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
23992461 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
** *
23992488 ATTTTTAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
23992515 ATTTATAGAATTA-CTTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
*
23992540 AGTTTACAGAATTACTGTTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
** * ** *
23992568 ATTTTTAAAATTACTATTTTACCCTAG
1 ATTTACAGAATTACCGTTTTACCCTCG
**
23992595 ATTTACAGAATTACTATTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
*
23992621 AGTTTACAGAATTACCGTTTTACCTTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
* **
23992649 ATTTACAGAGTTAGTGTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
* **
23992675 AGTTTACAGAGTTACTATTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
* *
23992703 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
23992730 ATTTACAAAATTACCGTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
**
23992756 AGTTTACAGAATTACTATTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
**
23992784 ATTTACAGAATTACTATTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* **
23992811 ATTTACAGAATTACCATTTTACCCTTA
1 ATTTACAGAATTACCGTTTTACCCTCG
** * *
23992838 ATTTTTAAAATTACCGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
23992865 ATTTACAGAATTACTGGTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
23992891 AGTTTACAAAATTATCGTTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
*
23992919 ATTTACAGAATTACCGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
23992946 ATT
1 ATT
23992949 ATGAAATTAC
Statistics
Matches: 419, Mismatches: 58, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
25 1 0.00
26 26 0.06
27 387 0.92
28 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCG
Found at i:23993021 original size:54 final size:54
Alignment explanation
Indices: 23992953--23993147 Score: 191
Period size: 54 Copynumber: 3.6 Consensus size: 54
23992943 TTGATTATGA
* *
23992953 AATTACTGAAATACCCCTATAGGCTAGAATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
* * *
23993007 CATTACTAAAATACCCTTATAGGGTAGAATTA-TCGAAATACTCTCGTA-A-GGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACT-GAAATAC-C-CCTATAGGGTAG
* * * *
23993061 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
* * * * * *
23993115 AATTACCGAGATACCTTTGTGGGGTAAAATTAC
1 AATTACTGAAATACCCTTATAGGGTAGAATTAC
23993148 CATTTTTCCC
Statistics
Matches: 115, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
52 2 0.02
53 4 0.03
54 104 0.90
55 2 0.02
56 3 0.03
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
Found at i:23993059 original size:27 final size:26
Alignment explanation
Indices: 23992953--23993148 Score: 131
Period size: 27 Copynumber: 7.3 Consensus size: 26
23992943 TTGATTATGA
* * * *
23992953 AATTACTGAAATACCCCTATAGGCTAG
1 AATTACCGAAATACCTC-GTAGGGTAG
* * *
23992980 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCTC-GTAGGGTAG
* ** **
23993007 CATTACTAAAATACCCTTATAGGGTAG
1 AATTACCGAAATA-CCTCGTAGGGTAG
* *
23993034 AATTATCGAAATACTCTCGTAAGGTAG
1 AATTACCGAAATAC-CTCGTAGGGTAG
* *
23993061 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATA-CCTCGTAGGGTAG
* *
23993088 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCTC-GTAGGGTAG
* * * *
23993115 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACCGAAATACC-TCGTAGGGTAG
23993142 AATTACC
1 AATTACC
23993149 ATTTTTCCCC
Statistics
Matches: 140, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.02
27 134 0.96
28 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (26 bp):
AATTACCGAAATACCTCGTAGGGTAG
Found at i:23993064 original size:81 final size:81
Alignment explanation
Indices: 23992977--23993128 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
23992967 CCCTATAGGC
* * * * *
23992977 TAGAATTA-CTGAAATACCCCTATAGGGTAGCATTACTAAAATACCCTTATAGGGTAGAATTATC
1 TAGAATTATC-GAAATACCCCTATAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAATTACC
23993041 GAAATACTCTCGTAAGG
65 GAAATACTCTCGTAAGG
* * * *
23993058 TAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCG
1 TAGAATTATCGAAATACCCCTATAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAATTACCG
*
23993123 AGATAC
66 AAATAC
23993129 CTTTGTGGGG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 59 0.98
82 1 0.02
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (81 bp):
TAGAATTATCGAAATACCCCTATAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAATTACCG
AAATACTCTCGTAAGG
Found at i:23994592 original size:93 final size:93
Alignment explanation
Indices: 23994478--23994647 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
23994468 CCCATAAGTG
* * * *
23994478 AACTCGGACTCATCTCAACAAGCTCGGGCGTTCGCATGCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
23994543 GAGCTT-GGATGCCTAGTTACATCTCTCA
66 GAG-TTCGGATGCCTAGTTACATCTCTCA
* * * *
23994571 AACTCGGACTCAACTCAACAAGTTCGGACATTGGCATCCATAGGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
23994636 GAGTTCGGATGC
66 GAGTTCGGATGC
23994648 TCAACCATCC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCTCA
Found at i:23996104 original size:27 final size:26
Alignment explanation
Indices: 23996066--23996148 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
23996056 CGGAGGAAGC
*
23996066 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
23996093 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
23996119 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
23996146 GTT
1 GTT
23996149 GACCGATCAA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:23996268 original size:22 final size:22
Alignment explanation
Indices: 23996236--23996294 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
23996226 CCCGTTATTA
*
23996236 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
23996258 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
23996280 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
23996295 ACGCATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:23996472 original size:25 final size:26
Alignment explanation
Indices: 23996444--23996529 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 26
23996434 TGCCACGTAT
* *
23996444 TCTGTT-AGGTGGCTTTGCCACATTA
1 TCTGTTCAGGTGGCTCTGCCACAATA
**
23996469 TCTGATTCTTGTGGCTCTGCCACAATA
1 TCTG-TTCAGGTGGCTCTGCCACAATA
* * * *
23996496 TCTGTATCTGGTGACTCTGTCACGATA
1 TCTGT-TCAGGTGGCTCTGCCACAATA
23996523 TCTGTTC
1 TCTGTTC
23996530 TGACAGCCAT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
25 4 0.08
26 5 0.10
27 41 0.82
ACGTcount: A:0.16, C:0.23, G:0.21, T:0.40
Consensus pattern (26 bp):
TCTGTTCAGGTGGCTCTGCCACAATA
Found at i:23996513 original size:27 final size:27
Alignment explanation
Indices: 23996459--23996531 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
23996449 TAGGTGGCTT
* * *
23996459 TGCCACATTATCTG-ATTCTTGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGACTC
23996486 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
* *
23996513 TGTCACGATATCTGT-TCTG
1 TGCCACAATATCTGTATCTG
23996532 ACAGCCATGC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 4 0.10
27 35 0.88
28 1 0.03
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Found at i:23996659 original size:6 final size:6
Alignment explanation
Indices: 23996650--23996751 Score: 93
Period size: 6 Copynumber: 16.8 Consensus size: 6
23996640 TTGCATTCAC
* *
23996650 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
23996699 -TTACTA ATACTG ATTCTA ATTCTG ATTCTG -TTACTA ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
23996747 ATTCT
1 ATTCT
23996752 CATTTTGGTT
Statistics
Matches: 77, Mismatches: 12, Indels: 14
0.75 0.12 0.14
Matches are distributed among these distances:
5 5 0.06
6 66 0.86
7 5 0.06
8 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:23996772 original size:30 final size:30
Alignment explanation
Indices: 23996650--23996751 Score: 168
Period size: 30 Copynumber: 3.4 Consensus size: 30
23996640 TTGCATTCAC
*
23996650 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
23996681 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
23996711 ATTCTAATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
23996741 ATTCTGATTCT
1 ATTCTGATTCT
23996752 CATTTTGGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 46 0.70
31 20 0.30
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:24008517 original size:38 final size:39
Alignment explanation
Indices: 24008455--24008534 Score: 126
Period size: 38 Copynumber: 2.1 Consensus size: 39
24008445 TACTTTCTAT
* *
24008455 TTGGCGTGATTCGAGTGGATCAGCTCTTACGAGCTTCTG
1 TTGGCGTGATTCGAGAGGACCAGCTCTTACGAGCTTCTG
*
24008494 TTGGCGTG-TTCGAGAGGACCAGCTCTTATGAGCTTCTG
1 TTGGCGTGATTCGAGAGGACCAGCTCTTACGAGCTTCTG
24008532 TTG
1 TTG
24008535 ACAATATACT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
38 30 0.79
39 8 0.21
ACGTcount: A:0.15, C:0.20, G:0.31, T:0.34
Consensus pattern (39 bp):
TTGGCGTGATTCGAGAGGACCAGCTCTTACGAGCTTCTG
Found at i:24009237 original size:12 final size:12
Alignment explanation
Indices: 24009217--24009248 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
24009207 CTAATGCCAC
*
24009217 TTTGAGTTGGTA
1 TTTGGGTTGGTA
24009229 TTTGGGTTGGTA
1 TTTGGGTTGGTA
24009241 TTTGGGTT
1 TTTGGGTT
24009249 TCTTAGGGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.00, G:0.38, T:0.53
Consensus pattern (12 bp):
TTTGGGTTGGTA
Found at i:24012702 original size:9 final size:9
Alignment explanation
Indices: 24012688--24012713 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
24012678 CATTGAACAT
24012688 TATAATTTG
1 TATAATTTG
24012697 TATAATTTG
1 TATAATTTG
24012706 TATAATTT
1 TATAATTT
24012714 TAATTCTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (9 bp):
TATAATTTG
Found at i:24027183 original size:19 final size:19
Alignment explanation
Indices: 24027159--24027197 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
24027149 AAGTTAGTAG
24027159 TTTCAGAATACCATTTCCA
1 TTTCAGAATACCATTTCCA
24027178 TTTCAGAATACCATTTCCA
1 TTTCAGAATACCATTTCCA
24027197 T
1 T
24027198 AAACCATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.38
Consensus pattern (19 bp):
TTTCAGAATACCATTTCCA
Found at i:24032527 original size:12 final size:12
Alignment explanation
Indices: 24032512--24032536 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24032502 TCATCATCTT
24032512 CTTCTTCCTCTC
1 CTTCTTCCTCTC
24032524 CTTCTTCCTCTC
1 CTTCTTCCTCTC
24032536 C
1 C
24032537 CCATGCTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTTCCTCTC
Found at i:24035704 original size:23 final size:25
Alignment explanation
Indices: 24035677--24035764 Score: 74
Period size: 23 Copynumber: 3.5 Consensus size: 25
24035667 AATGAAAAGG
*
24035677 GCACTATGTGTGCGAATGG-GGC-A
1 GCACTATGTGTGCGAATGGAAGCTA
* *
24035700 GCACTATATGTGCGTATGGAAAAGCTA
1 GCACTATGTGTGCGAATGG--AAGCTA
* **
24035727 GCACTATGTGTGCGAA-AGAATATA
1 GCACTATGTGTGCGAATGGAAGCTA
24035751 TGCACTATGTGTGC
1 -GCACTATGTGTGC
24035765 AAATTTATTA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
23 17 0.33
24 4 0.08
25 13 0.25
26 3 0.06
27 15 0.29
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (25 bp):
GCACTATGTGTGCGAATGGAAGCTA
Found at i:24037411 original size:16 final size:16
Alignment explanation
Indices: 24037377--24037427 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
24037367 TCATAATTAA
* *
24037377 TTAATAATAATT-TAT
1 TTAATAAAAATTAAAT
**
24037392 TTAATCCAAATTAAAT
1 TTAATAAAAATTAAAT
*
24037408 TTAATAAAAATTAAAA
1 TTAATAAAAATTAAAT
24037424 TTAA
1 TTAA
24037428 ATATATAATG
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
15 9 0.32
16 19 0.68
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (16 bp):
TTAATAAAAATTAAAT
Found at i:24037611 original size:23 final size:23
Alignment explanation
Indices: 24037564--24037607 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
24037554 CTTGTCAAAA
24037564 AATTATCAAAATTAATCAAAATC
1 AATTATCAAAATTAATCAAAATC
*
24037587 AATTAT-AAAATTAATTAAAAT
1 AATTATCAAAATTAATCAAAAT
24037608 TCAACATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (23 bp):
AATTATCAAAATTAATCAAAATC
Found at i:24040129 original size:15 final size:15
Alignment explanation
Indices: 24040097--24040125 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
24040087 ATTTTTTGTG
24040097 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
24040112 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
24040126 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:24041499 original size:6 final size:6
Alignment explanation
Indices: 24041469--24041649 Score: 95
Period size: 6 Copynumber: 29.3 Consensus size: 6
24041459 AAGAAACATT
* * *
24041469 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * **
24041518 ATCAAA ATCAAA ATTAGA ATCATA ATTAGGTA A-CAGA ATCAGA ATCATT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* *
24041567 ATCAGGTA A-CAGA ATCAGA ATCAGA ATCAGA ATTAGGCA A-CAGA ATTAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* *
24041617 ATCAGT ATCCGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA AT-CAG-A ATCAGA ATCAGA ATCAGA AT
24041650 GTGAATGCAA
Statistics
Matches: 132, Mismatches: 26, Indels: 34
0.69 0.14 0.18
Matches are distributed among these distances:
5 10 0.08
6 104 0.79
7 11 0.08
8 7 0.05
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:24041524 original size:37 final size:37
Alignment explanation
Indices: 24041478--24041564 Score: 111
Period size: 37 Copynumber: 2.4 Consensus size: 37
24041468 TATCAGAACT
* * *
24041478 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
* * *
24041515 AGAATCAAAATCAAAATTAGAATCATAATTAGGTAAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
*
24041552 AGAATCAGAATCA
1 AGAATCAAAATCA
24041565 TTATCAGGTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:24041573 original size:25 final size:25
Alignment explanation
Indices: 24041533--24041645 Score: 102
Period size: 25 Copynumber: 4.3 Consensus size: 25
24041523 AATCAAAATT
*
24041533 AGAATCATAATTAGGTAACAGAATC
1 AGAATCATAATCAGGTAACAGAATC
*
24041558 AGAATCATTATCAGGTAACAGAATC
1 AGAATCATAATCAGGTAACAGAATC
* * *
24041583 AGAATCAGAATCAGAATTAGGCAACAGAATT
1 AGAATC---AT---AATCAGGTAACAGAATC
*
24041614 AGAATCAGT-ATCCGGTAACAGAATC
1 AGAATCA-TAATCAGGTAACAGAATC
24041639 AGAATCA
1 AGAATCA
24041646 GAATGTGAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
25 48 0.68
28 3 0.04
29 1 0.01
31 19 0.27
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (25 bp):
AGAATCATAATCAGGTAACAGAATC
Found at i:24041631 original size:56 final size:56
Alignment explanation
Indices: 24041490--24041649 Score: 194
Period size: 56 Copynumber: 2.8 Consensus size: 56
24041480 AATCAAAATG
* * * * *
24041490 AGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATTAGAATCATAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATC------AGAATCAGAATTAGGCAAC
*
24041552 AGAATCAGAATCATTATCAGGTAACAGAATCAGAATCAGAATCAGAATTAGGCAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATTAGGCAAC
* *
24041608 AGAATTAGAATCAGTATCCGGTAACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
24041650 GTGAATGCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
56 56 0.63
62 33 0.37
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.21
Consensus pattern (56 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATTAGGCAAC
Found at i:24041642 original size:31 final size:31
Alignment explanation
Indices: 24041490--24041649 Score: 122
Period size: 31 Copynumber: 5.4 Consensus size: 31
24041480 AATCAAAATG
* *
24041490 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
* * * * *
24041521 AAAATCAAAATTAGAATCA--TAATTAGGTAA-C
1 AGAATCAGAATCAGTATCAGGTAA-CA-G-AATC
*
24041552 AGAATCAGAATCATTATCAGGTAACAGAATC
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
* *
24041583 AGAATCAGAATCAGAATTAGG---C--AA-C
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
* *
24041608 AGAATTAGAATCAGTATCCGGTAACAGAATC
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
24041639 AGAATCAGAAT
1 AGAATCAGAAT
24041650 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 19, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
25 18 0.18
26 2 0.02
28 2 0.02
29 2 0.02
30 5 0.05
31 63 0.64
32 3 0.03
33 3 0.03
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATC
Found at i:24041646 original size:25 final size:25
Alignment explanation
Indices: 24041545--24041646 Score: 105
Period size: 25 Copynumber: 3.8 Consensus size: 25
24041535 AATCATAATT
*
24041545 AGGTAACAGAATCAGAATCATTATC
1 AGGTAACAGAATCAGAATCAGTATC
*
24041570 AGGTAACAGAATCAGAATCAGAATCAGAATT
1 AGGTAACAGAATCAGAATCAG--T----ATC
* *
24041601 AGGCAACAGAATTAGAATCAGTATC
1 AGGTAACAGAATCAGAATCAGTATC
*
24041626 CGGTAACAGAATCAGAATCAG
1 AGGTAACAGAATCAGAATCAG
24041647 AATGTGAATG
Statistics
Matches: 63, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
25 40 0.63
27 1 0.02
29 1 0.02
31 21 0.33
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.20
Consensus pattern (25 bp):
AGGTAACAGAATCAGAATCAGTATC
Found at i:24043457 original size:14 final size:15
Alignment explanation
Indices: 24043420--24043461 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
24043410 AAATACAAAC
24043420 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
24043436 TATA-ATGTGATA-G
1 TATATATGTGAAATG
24043449 TATATATGTGAAA
1 TATATATGTGAAA
24043462 GTCAAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:24043695 original size:41 final size:42
Alignment explanation
Indices: 24043583--24043742 Score: 144
Period size: 43 Copynumber: 3.8 Consensus size: 42
24043573 AGGATTTTCA
* * * * *
24043583 ATATGTGTTCTCGTGTAAGACCATGTCAGGGACGTTGGTATCG
1 ATATGTGAT-TCGTGTAAGACCATGTCTGGGACATCGGCATCG
* *
24043626 ATATGTGATTATGTGTAAGACCATGTCTGGGACATCGGCATTG
1 ATATGTGATT-CGTGTAAGACCATGTCTGGGACATCGGCATCG
* *
24043669 -TATTTGATTCGTGTAAGACCCTGTCTGGGACAAT-GGCATCG
1 ATATGTGATTCGTGTAAGACCATGTCTGGGAC-ATCGGCATCG
* * * * *
24043710 ATATATGATAGCATGTAAGACCACGTTTGGGAC
1 ATATGTGAT-TCGTGTAAGACCATGTCTGGGAC
24043743 GTTGGCATTG
Statistics
Matches: 96, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 26 0.27
42 18 0.19
43 52 0.54
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (42 bp):
ATATGTGATTCGTGTAAGACCATGTCTGGGACATCGGCATCG
Found at i:24043699 original size:84 final size:83
Alignment explanation
Indices: 24043593--24043754 Score: 200
Period size: 84 Copynumber: 1.9 Consensus size: 83
24043583 ATATGTGTTC
** * * *
24043593 TCGTGTAAGACCATGTCAGGGACGTTGGTATCGATATGTGATTATG-TGTAAGACCATGTCTGGG
1 TCGTGTAAGACCATGTCAGGGACAATGGCATCGATATATGA-TA-GATGTAAGACCACGTCTGGG
24043657 ACATCGGCATTGTATTTGAT
64 ACATCGGCATTGTATTTGAT
* * *
24043677 TCGTGTAAGACCCTGTCTGGGACAATGGCATCGATATATGATAGCATGTAAGACCACGTTTGGGA
1 TCGTGTAAGACCATGTCAGGGACAATGGCATCGATATATGATAG-ATGTAAGACCACGTCTGGGA
* *
24043742 CGTTGGCATTGTA
65 CATCGGCATTGTA
24043755 CGATATATGT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
82 1 0.02
83 2 0.03
84 63 0.95
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (83 bp):
TCGTGTAAGACCATGTCAGGGACAATGGCATCGATATATGATAGATGTAAGACCACGTCTGGGAC
ATCGGCATTGTATTTGAT
Found at i:24046236 original size:25 final size:25
Alignment explanation
Indices: 24046180--24046236 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
24046170 ATTTAATTAA
24046180 TAAAAATTATTAATAATTCAATAAAT
1 TAAAAATTA-TAATAATTCAATAAAT
*
24046206 TGAAAAATTA-AATAATTGAATAAAAT
1 T-AAAAATTATAATAATTCAAT-AAAT
24046232 TAAAA
1 TAAAA
24046237 TTTAGGAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 14 0.50
26 6 0.21
27 8 0.29
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (25 bp):
TAAAAATTATAATAATTCAATAAAT
Found at i:24046992 original size:22 final size:19
Alignment explanation
Indices: 24046953--24046994 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
24046943 TGCAAAGTTG
24046953 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
24046972 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
24046994 A
1 A
24046995 AAGATCATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:24048668 original size:27 final size:27
Alignment explanation
Indices: 24048551--24048861 Score: 272
Period size: 27 Copynumber: 11.7 Consensus size: 27
24048541 CTAGTTTACC
* * *
24048551 AAATTACTAAAATACCC-CCAGTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
24048577 AAATTACCAAAGTACCC-CGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
24048603 AAATTACCGAAATATCATCGA-TTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
24048629 AAATTACTAAAATACCCTCGATTTTTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
24048656 AAATTACCGAAATACGCT-TAGTTTGCA
1 AAATTACCAAAATACCCTCGA-TTTGTA
**
24048683 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
24048710 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
24048737 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
24048764 AAGTTACCCAAATATCCTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
24048791 AAATTACCAAAATACCGTTGA-TTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
24048817 GAATTACTAAAATACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
24048844 AAATTATCGAAATACCCT
1 AAATTACCAAAATACCCT
24048862 TGTAGGGTAG
Statistics
Matches: 224, Mismatches: 56, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
26 77 0.34
27 146 0.65
28 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:24048724 original size:81 final size:80
Alignment explanation
Indices: 24048551--24048857 Score: 343
Period size: 81 Copynumber: 3.8 Consensus size: 80
24048541 CTAGTTTACC
* *
24048551 AAATTACTAAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCGGTTTATAAAATTACCGAAA
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCGGTTTATAAAATTACCGAAA
*
24048615 TATCATCGA-TTGTA
66 TATCCTCGATTTGTA
* * *** ** *
24048629 AAATTACTAAAATACCCTCGATTTTTAAAATTACCGAAA-TACGCTTAGTTTGCAAAATTACTGA
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACC-AAAGTAC-CCCGGTTTATAAAATTACCGA
*
24048693 AATACCCTCGATTTGTA
64 AATATCCTCGATTTGTA
* *
24048710 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAGTTACCCAA
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTA-CCCCGGTTTATAAAATTACCGAA
*
24048775 ATATCCTTGATTTGTA
65 ATATCCTCGATTTGTA
* * * * * * * *
24048791 AAATTACCAAAATACCGTTGA-TTGTAGAATTACTAAAATACCCTCGATTTATAAAATTATCGAA
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCC-CGGTTTATAAAATTACCGAA
24048855 ATA
65 ATA
24048858 CCCTTGTAGG
Statistics
Matches: 189, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
78 17 0.09
79 20 0.11
80 65 0.34
81 86 0.46
82 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (80 bp):
AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCGGTTTATAAAATTACCGAAA
TATCCTCGATTTGTA
Found at i:24048875 original size:27 final size:27
Alignment explanation
Indices: 24048845--24049469 Score: 656
Period size: 27 Copynumber: 23.2 Consensus size: 27
24048835 CGATTTATAA
24048845 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
24048872 AATTA-CTGAAATTCCATTATAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* * *
24048899 AATTACCGAAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
**
24048926 AATTATCGAAATACCCTTGTAATGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
24048953 AATTA-CTAAAATACCCCTGTAAGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* *
24048980 AATTATCGAAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
24049007 AATTA-CTGAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
*
24049034 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
24049061 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
24049088 AATTATCGAAATACCCTTGTATGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
24049115 AATTATTGAAATA-CCATGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
24049141 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
24049168 AATTA-CTGAAATA-CCTCTATAGGGTAG
1 AATTATC-GAAATACCCT-TGTAGGGTAG
* *
24049195 AATTATCAAAATACCCTTGTAGCGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
24049222 AAATA-CAAAAATACCTTTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* * *
24049249 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * * **
24049276 AATTATTGAAATGCCCCTGTAGAATAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
24049303 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
24049330 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
24049357 AATTATTGAAATACCCCTGTAGGATAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
24049384 AATTA-CTGAAATACCCGTGTAGGTTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* * *
24049411 AAATATCGAAATACCCCTGTGGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * * *
24049438 AATTA-CTGAGATACCCTTATGGGGTAA
1 AATTATC-GAAATACCCTTGTAGGGTAG
24049465 AATTA
1 AATTA
24049470 CCGTTTTGCC
Statistics
Matches: 513, Mismatches: 69, Indels: 32
0.84 0.11 0.05
Matches are distributed among these distances:
26 31 0.06
27 473 0.92
28 9 0.02
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTATCGAAATACCCTTGTAGGGTAG
Found at i:24048930 original size:81 final size:81
Alignment explanation
Indices: 24048845--24049472 Score: 751
Period size: 81 Copynumber: 7.8 Consensus size: 81
24048835 CGATTTATAA
* * * *
24048845 AATTATCGAAATACCCTTGTAGGGTAGAATTACTGAAATTCCATTATAGGGTAGAATTACCGAAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAA
* *
24048910 TACCCCTATAGGGTAG
66 TACCCTTGTAGGGTAG
* ** * * * *
24048926 AATTATCGAAATACCCTTGTAATGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTATCGAAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAA
* *
24048991 TACCCCTATAGGGTAG
66 TACCCTTGTAGGGTAG
*
24049007 AATTA-CTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAA
1 AATTATC-GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAA
24049071 ATACCCTTGTAGGGTAG
65 ATACCCTTGTAGGGTAG
* * * *
24049088 AATTATCGAAATACCCTTGTATGGTAGAATTATTGAAATA-CCATGTAGGGTAGAATTACCGAAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAA
24049152 TACCCTTGTAGGGTAG
66 TACCCTTGTAGGGTAG
* * * * * **
24049168 AATTA-CTGAAATACCTCTATAGGGTAGAATTA-TCAAAATACCCTTGTAGCGTAGAAATACAAA
1 AATTATC-GAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCTTGTAGGGTAGAATTACCGA
*
24049231 AATACCTTTGTAGGGTAG
64 AATACCCTTGTAGGGTAG
* * * * * ** * *
24049249 AAATACCGAAATACCCCTGTAGGGTAGAATTATTGAAATGCCCCTGTAGAATAGAAATACCAAAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAA
24049314 TACCCTTGTAGGGTAG
66 TACCCTTGTAGGGTAG
* * * * *
24049330 AAATATCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGATAGAATTACTGAAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAA
* *
24049395 TACCCGTGTAGGTTAG
66 TACCCTTGTAGGGTAG
* * * * * *
24049411 AAATATCGAAATACCCCTGTGGGGTAGAATTACTGAGATACCCTTATGGGGTAAAATTACCG
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCG
24049473 TTTTGCCCTA
Statistics
Matches: 478, Mismatches: 62, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
79 2 0.00
80 71 0.15
81 402 0.84
82 3 0.01
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (81 bp):
AATTATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAA
TACCCTTGTAGGGTAG
Found at i:24049481 original size:27 final size:27
Alignment explanation
Indices: 24049451--24049514 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 27
24049441 TACTGAGATA
*
24049451 CCCTTATGGGGTAAAATTACCGTTTTG
1 CCCTTATGGGGTAAAATGACCGTTTTG
* * * * *
24049478 CCCTAACGGTGTTAAATGACTGTTTTG
1 CCCTTATGGGGTAAAATGACCGTTTTG
*
24049505 CCCTTGTGGG
1 CCCTTATGGG
24049515 CAAGTGACTG
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (27 bp):
CCCTTATGGGGTAAAATGACCGTTTTG
Found at i:24050065 original size:27 final size:26
Alignment explanation
Indices: 24050035--24050138 Score: 100
Period size: 27 Copynumber: 3.9 Consensus size: 26
24050025 ATTCTGTTAA
* * *
24050035 GTGGCTTTGCCACATTATCTAATTTTG
1 GTGGCTATGCCACAATATCT-ATTCTG
*
24050062 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTATTCTG
* *
24050089 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTAT-TCTG
* * *
24050116 GTGACTCTGTCACAATATCTATT
1 GTGGCTATGCCACAATATCTATT
24050139 TTGGCAGCCA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 10 0.15
27 51 0.76
28 6 0.09
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTATTCTG
Found at i:24050298 original size:6 final size:6
Alignment explanation
Indices: 24050289--24050390 Score: 84
Period size: 6 Copynumber: 16.7 Consensus size: 6
24050279 TACCTGATAT
* * *
24050289 TGATTC TGATTC TGATTT TGATTC TGGTTC TG-TTACC TGATTC TAATTC
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC
* * *
24050338 TGATTC TG-TCATC TGATTC TGATTC TAATTC TCATTT TGATTC T-AGTTC
1 TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC TGA-TTC
24050387 TGAT
1 TGAT
24050391 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
5 4 0.05
6 63 0.81
7 8 0.10
8 3 0.04
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.51
Consensus pattern (6 bp):
TGATTC
Found at i:24050337 original size:25 final size:25
Alignment explanation
Indices: 24050300--24050369 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
24050290 GATTCTGATT
* * *
24050300 CTGATTTTGATTCTGGTTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTCAC
* *
24050325 CTGATTCTAATTCTGATTCTGTCAT
1 CTGATTCTGATTCTGATTCTGTCAC
*
24050350 CTGATTCTGATTCTAATTCT
1 CTGATTCTGATTCTGATTCT
24050370 CATTTTGATT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.50
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:24050360 original size:31 final size:30
Alignment explanation
Indices: 24050289--24050369 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 30
24050279 TACCTGATAT
* *
24050289 TGATTCTGATTCTGATTTTGATTCTGGTTC
1 TGATTCTGATTCTAATTCTGATTCTGGTTC
24050319 TG-TTACCTGATTCTAATTCTGATTCT-GTCATC
1 TGATT--CTGATTCTAATTCTGATTCTGGT--TC
24050351 TGATTCTGATTCTAATTCT
1 TGATTCTGATTCTAATTCT
24050370 CATTTTGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
29 2 0.05
30 4 0.09
31 32 0.73
32 4 0.09
33 2 0.05
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (30 bp):
TGATTCTGATTCTAATTCTGATTCTGGTTC
Found at i:24050369 original size:68 final size:68
Alignment explanation
Indices: 24050260--24050388 Score: 179
Period size: 68 Copynumber: 1.9 Consensus size: 68
24050250 TTGCATTCAC
* * * * *
24050260 ATTCTAATTTTCATTCTGTTACCTGATATTGATTCTGATTCTGATTTTGATTCTGGTTCTGTTAC
1 ATTCTAATTCTCATTCTGTCACCTGATATTGATTCTAATTCTCATTTTGATTCTAGTTCTGTTAC
24050325 CTG
66 CTG
* *
24050328 ATTCTAATTCTGATTCTGTCATCTGAT-TCTGATTCTAATTCTCATTTTGATTCTAGTTCTG
1 ATTCTAATTCTCATTCTGTCACCTGATAT-TGATTCTAATTCTCATTTTGATTCTAGTTCTG
24050389 ATAATGTTTC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
67 1 0.02
68 52 0.98
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (68 bp):
ATTCTAATTCTCATTCTGTCACCTGATATTGATTCTAATTCTCATTTTGATTCTAGTTCTGTTAC
CTG
Found at i:24061263 original size:37 final size:37
Alignment explanation
Indices: 24061213--24061356 Score: 225
Period size: 37 Copynumber: 3.9 Consensus size: 37
24061203 ACCTTTAGCT
* * *
24061213 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
24061250 CGGACAAAATCTCCACACGTAGTCATCGAGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
24061287 CGGGCAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
24061324 CGGACATACTCTCCACACGTAGTCATCGGGTCT
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCT
24061357 GTAGAGCTCG
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:24061554 original size:47 final size:47
Alignment explanation
Indices: 24061476--24061885 Score: 635
Period size: 47 Copynumber: 8.6 Consensus size: 47
24061466 CCCTTCGGGA
* * * * *
24061476 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * * *
24061523 CCTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
24061570 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
24061617 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
24061666 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAC-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-CGGC
*
24061713 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
24061760 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
24061809 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAC-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-CGGC
24061856 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
24061886 TCAAATATAC
Statistics
Matches: 337, Mismatches: 19, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
47 245 0.73
48 2 0.01
49 90 0.27
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:24061673 original size:96 final size:94
Alignment explanation
Indices: 24061476--24061885 Score: 649
Period size: 96 Copynumber: 4.3 Consensus size: 94
24061466 CCCTTCGGGA
* * * * * * * *
24061476 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
24061541 TTTCACATTCATCACATCAGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
24061570 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
24061635 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
24061666 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24061731 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
24061760 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
24061825 ACTTTCACATTCATCACATCGGCCATTACGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
24061856 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
24061886 TCAAATATAC
Statistics
Matches: 294, Mismatches: 18, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
94 114 0.39
96 180 0.61
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:24061745 original size:143 final size:143
Alignment explanation
Indices: 24061476--24061885 Score: 743
Period size: 143 Copynumber: 2.9 Consensus size: 143
24061466 CCCTTCGGGA
* * * * *
24061476 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
24061539 ACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
24061604 TCGGCCATTAGGC
131 TCGGCCATTAGGC
24061617 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
24061682 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
24061747 TCGGCCATTAGGC
131 TCGGCCATTAGGC
24061760 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
24061825 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCAT
66 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCAT
24061886 TCAAATATAC
Statistics
Matches: 260, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
141 10 0.04
142 1 0.00
143 249 0.96
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:24064205 original size:85 final size:85
Alignment explanation
Indices: 24064076--24064254 Score: 322
Period size: 85 Copynumber: 2.1 Consensus size: 85
24064066 TATTTTATTG
*
24064076 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTG
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTG
*
24064141 TAGCCATAACATCTTGTCCA
66 TAGCCATAACACCTTGTCCA
*
24064161 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTG
24064226 TAGCCATAACACCTTGTCCA
66 TAGCCATAACACCTTGTCCA
*
24064246 CCAATGCTC
1 CCCATGCTC
24064255 ATGGCCGGCC
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTG
TAGCCATAACACCTTGTCCA
Found at i:24065361 original size:29 final size:31
Alignment explanation
Indices: 24065325--24065400 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 31
24065315 GTTGAAGAAC
*
24065325 TCGCACACACAGTGCCTCAATT-ACCG-ATT
1 TCGCACACACAGTGCCTCAATTAAACGAATT
* **
24065354 TCGCACACATAGTG-CTCGGTTAAACGAATT
1 TCGCACACACAGTGCCTCAATTAAACGAATT
24065384 T-GCACACACAGTGCCTC
1 TCGCACACACAGTGCCTC
24065401 TAATCATTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 5 0.13
29 27 0.69
30 7 0.18
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.24
Consensus pattern (31 bp):
TCGCACACACAGTGCCTCAATTAAACGAATT
Found at i:24065364 original size:57 final size:58
Alignment explanation
Indices: 24065292--24065400 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
24065282 GCCCACTGAT
* *
24065292 CGATCTCGCACACATAGTGCTTGGTTGAA-GAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAACGAACTCGCACACACAGTGCCTCAATTAC
* * *
24065349 CGATTTCGCACACATAGTGCTCGGTTAAACGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAACGAACTCGCACACACAGTGCCTC
24065401 TAATCATTCG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 26 0.57
58 20 0.43
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAACGAACTCGCACACACAGTGCCTCAATTAC
Found at i:24065424 original size:54 final size:56
Alignment explanation
Indices: 24065292--24065424 Score: 157
Period size: 57 Copynumber: 2.4 Consensus size: 56
24065282 GCCCACTGAT
* * *
24065292 CGATCTCGCACACATAGTGCTTGGTTGAAGAACTCGCACACACAGTGCCTCAATTA
1 CGATTTCGCACACATAGTGCTCGGTTAAAGAACTCGCACACACAGTGCCTCAATTA
* *
24065348 CCGATTTCGCACACATAGTGCTCGGTTAAACGAATTTGCACACACAGTGCCTCTAA-T-
1 -CGATTTCGCACACATAGTGCTCGGTTAAA-GAACTCGCACACACAGTGCCTC-AATTA
*
24065405 C-A-TTCGCACACATAATGCTC
1 CGATTTCGCACACATAGTGCTC
24065425 TTACTCATTC
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
54 17 0.25
55 1 0.01
56 1 0.01
57 26 0.38
58 21 0.31
59 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (56 bp):
CGATTTCGCACACATAGTGCTCGGTTAAAGAACTCGCACACACAGTGCCTCAATTA
Found at i:24065644 original size:40 final size:40
Alignment explanation
Indices: 24065611--24065962 Score: 569
Period size: 40 Copynumber: 8.8 Consensus size: 40
24065601 CCAGCATGAT
* * * * *
24065611 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGTACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
24065651 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
24065691 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
24065731 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
24065771 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
24065811 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
24065851 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
24065891 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
24065931 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
24065963 CTCAATTCTC
Statistics
Matches: 292, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 292 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:24067276 original size:37 final size:37
Alignment explanation
Indices: 24067226--24067370 Score: 218
Period size: 37 Copynumber: 3.9 Consensus size: 37
24067216 ACCTTTAGCT
* * *
24067226 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
24067263 CGGACAAAATCTCCACACGTAGTCATCGAGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
24067300 CGGGCAAAATCTCCACACGTAGTCATCGGGTCTTACT
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
24067337 CGGACATACTCTCCACACGTAGTCATCGGGTCTT
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTT
24067371 TAGAGCTCGG
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:24067567 original size:47 final size:47
Alignment explanation
Indices: 24067489--24067898 Score: 658
Period size: 47 Copynumber: 8.6 Consensus size: 47
24067479 CCCTTCGGGA
* * * * * *
24067489 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24067536 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24067583 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24067630 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24067679 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTACGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24067726 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24067773 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24067822 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTATGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24067869 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
24067899 TCAAATATAC
Statistics
Matches: 338, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 248 0.73
49 90 0.27
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24067686 original size:96 final size:94
Alignment explanation
Indices: 24067489--24067898 Score: 658
Period size: 96 Copynumber: 4.3 Consensus size: 94
24067479 CCCTTCGGGA
* * * * * * * *
24067489 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24067554 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
24067583 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
24067648 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
24067679 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24067744 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
24067773 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
24067838 ACTTTCACATTCATCACATCGGCCATTATGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
24067869 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
24067899 TCAAATATAC
Statistics
Matches: 295, Mismatches: 17, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 114 0.39
96 181 0.61
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:24067758 original size:143 final size:143
Alignment explanation
Indices: 24067489--24067898 Score: 743
Period size: 143 Copynumber: 2.9 Consensus size: 143
24067479 CCCTTCGGGA
* * * * *
24067489 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
24067552 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
24067617 TCGGCCATTAGGC
131 TCGGCCATTAGGC
24067630 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
24067695 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
24067760 TCGGCCATTAGGC
131 TCGGCCATTAGGC
24067773 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
24067838 ACTTTCACATTCATCACATCGGCCATTATGCCTTATCACATATATACACTTTCACATTCAT
66 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCAT
24067899 TCAAATATAC
Statistics
Matches: 260, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
141 10 0.04
142 1 0.00
143 249 0.96
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:24070182 original size:82 final size:84
Alignment explanation
Indices: 24070080--24070254 Score: 318
Period size: 82 Copynumber: 2.1 Consensus size: 84
24070070 ATATTTATTG
*
24070080 CCCATGCCCTTATTTTATTAATCCTTACATAATGCACTACCCCAACA-GTTTATGACATGTTTTT
1 CCCATGCTCTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
24070144 AGCCATAACATCTTGTCCA
66 AGCCATAACATCTTGTCCA
*
24070163 -CCATGCTCTTTTTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
1 CCCATGCTCTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
24070227 AGCCATAACATCTTGTCCA
66 AGCCATAACATCTTGTCCA
24070246 CCCATGCTC
1 CCCATGCTC
24070255 ATGGCCGGCC
Statistics
Matches: 88, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
82 44 0.50
83 36 0.41
84 8 0.09
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (84 bp):
CCCATGCTCTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
AGCCATAACATCTTGTCCA
Found at i:24073298 original size:27 final size:26
Alignment explanation
Indices: 24073265--24073555 Score: 221
Period size: 27 Copynumber: 10.8 Consensus size: 26
24073255 ATACCCCCAC
*
24073265 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* * * *
24073292 TTATAAAATTATCGAAATACCGTC-AA
1 TTGTAAAATTA-CCAAATACCCTCGAT
* *
24073318 TTGTAAAATTACTAAAATACCCTCAAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
24073345 TTGTAAAATTATCGAAATACCCTC-AGT
1 TTGTAAAATTA-CCAAATACCCTCGA-T
* * *
24073372 TTGCAAAATTACTAAAATACCCTTGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
24073399 TTGTAAAATTACTAGAATACCCTCGAT
1 TTGTAAAATTACCA-AATACCCTCGAT
* * *
24073426 TTGTATAATTACAAAAGTACCC-CCAGT
1 TTGTAAAATTACCAAA-TACCCTCGA-T
* *
24073453 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
* * *
24073480 TTGTAAAATTATCAAAATACCGTTGA-
1 TTGTAAAATTA-CCAAATACCCTCGAT
* *
24073506 TTGTAAAATTACTGAAATACCCTTGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
24073533 TTATAAAGTTACCGAAATACCCT
1 TTGTAAAATTACC-AAATACCCT
24073556 TGTAGGGTAG
Statistics
Matches: 214, Mismatches: 35, Indels: 30
0.77 0.13 0.11
Matches are distributed among these distances:
25 2 0.01
26 49 0.23
27 151 0.71
28 12 0.06
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:24073430 original size:81 final size:80
Alignment explanation
Indices: 24073245--24073555 Score: 274
Period size: 81 Copynumber: 3.9 Consensus size: 80
24073235 TAGTTTACCC
* * * * * * * *
24073245 AATTACTGAAATACCC-CCACTTGTAAAATTACCAAAGTACCC-CCGATTTATAAAATTATCGAA
1 AATTACTAAAATACCCTCGATTTGTAAAATTACGAAA-TACCCTCAG-TTTACAAAATTACCAAA
* *
24073308 ATACCGTC-AATTGTAA
64 ATACCCTCGATTTGTAA
* * *
24073324 AATTACTAAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCAGTTTGCAAAATTACTAAAA
1 AATTACTAAAATACCCTCGATTTGTAAAATTA-CGAAATACCCTCAGTTTACAAAATTACCAAAA
*
24073389 TACCCTTGATTTGTAA
65 TACCCTCGATTTGTAA
* * * * * *
24073405 AATTACTAGAATACCCTCGATTTGTATAATTACAAAAGTACCCCCAGTTTATAAAATTACCCAAA
1 AATTACTAAAATACCCTCGATTTGTAAAATTACGAAA-TACCCTCAGTTTACAAAATTACCAAAA
*
24073470 TATCCTCGATTTGTAA
65 TACCCTCGATTTGTAA
* * * * * *
24073486 AATTA-TCAAAATACCGTTGA-TTGTAAAATTACTGAAATACCCT-TGATTTATAAAGTTACCGA
1 AATTACT-AAAATACCCTCGATTTGTAAAATTAC-GAAATACCCTCAG-TTTACAAAATTACCAA
24073548 AATACCCT
63 AATACCCT
24073556 TGTAGGGTAG
Statistics
Matches: 190, Mismatches: 34, Indels: 15
0.79 0.14 0.06
Matches are distributed among these distances:
79 16 0.08
80 78 0.41
81 96 0.51
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
AATTACTAAAATACCCTCGATTTGTAAAATTACGAAATACCCTCAGTTTACAAAATTACCAAAAT
ACCCTCGATTTGTAA
Found at i:24073571 original size:27 final size:27
Alignment explanation
Indices: 24073541--24074163 Score: 648
Period size: 27 Copynumber: 23.2 Consensus size: 27
24073531 ATTTATAAAG
24073541 TTACCGAAATACCCTTGTAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* *
24073568 TTACTGAAATACCATTGTAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* *
24073595 TTACCAAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* **
24073622 TTACCGAAATACCCCTGTAATGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* *
24073649 TTACTGAAATACCAC-TGTAAGGTAGAA
1 TTACCGAAATACC-CTTGTAGGGTAGAA
* * *
24073676 TTACCGAAATGCCCCTCTAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* * *
24073703 TTACTG---TACCCCTATAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* *
24073727 TTACTGAAATACCCTTATAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
** *
24073754 TTATTGAAATACCCTTGTATGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* *
24073781 TTATCGAAATACCCTTGTATGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
** *
24073808 TTATTGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* *
24073835 TTATCGAAATACCCCTG-AGGGGTAGAA
1 TTACCGAAATACCCTTGTA-GGGTAGAA
* * *
24073862 TTACTGAAATACCCCTATAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
*
24073889 TTATCGAAATACCCTTGTAGGGTAGTAA
1 TTACCGAAATACCCTTGTAGGGTAG-AA
* *
24073917 -TACTGAAATATCCTTGTAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* *
24073943 ATACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
** *
24073970 TTATTGAAATACTCC-TGTAGGATAGAA
1 TTACCGAAATAC-CCTTGTAGGGTAGAA
* *
24073997 ATACCGAAATAACCTTGTAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* * *
24074024 ATATCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* * * *
24074051 TTTCTGAAATACCCTTATAGGATAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
*
24074078 TTACTGAAATACCCTTGTAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
* * *
24074105 ATACCGAAATACCCCTATAGGGTAGAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
*** * * *
24074132 TTGTTGAGATACCCTTGTGGGGTAAAA
1 TTACCGAAATACCCTTGTAGGGTAGAA
24074159 TTACC
1 TTACC
24074164 ATTTTGCCCC
Statistics
Matches: 507, Mismatches: 78, Indels: 22
0.84 0.13 0.04
Matches are distributed among these distances:
24 22 0.04
26 6 0.01
27 473 0.93
28 6 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (27 bp):
TTACCGAAATACCCTTGTAGGGTAGAA
Found at i:24073572 original size:161 final size:161
Alignment explanation
Indices: 24073245--24073580 Score: 366
Period size: 161 Copynumber: 2.1 Consensus size: 161
24073235 TAGTTTACCC
* * * * *
24073245 AATTACTGAAATACCC-CCACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTATCGAAA
1 AATTACTGAAATACCCTCGATTTGTAAAATTACAAAAGTACCCCCGATTTATAAAATTACCCAAA
24073309 TACCGTCAATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCAGTTT
66 TACCGTCAATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCAGTTT
* * **
24073374 GCAAAATTACTAAAATACCCTTGATTTGTAA
131 ACAAAATTACCAAAATACCCTTGATGGGTAA
*
24073405 AATTACT-AGAATACCCTCGATTTGTATAATTACAAAAGTACCCCC-AGTTTATAAAATTACCCA
1 AATTACTGA-AATACCCTCGATTTGTAAAATTACAAAAGTACCCCCGA-TTTATAAAATTACCCA
* * **
24073468 AATATCC-TCGATTTGTAAAATTA-TCAAAATACCGTTGA-TTGTAAAATTA-CTGAAATACCCT
64 AATA-CCGTC-AATTGTAAAATTACT-AAAATACCCTCAATTTGTAAAATTATC-GAAATACCCT
* * * * *
24073529 -TGATTTATAAAGTTACCGAAATACCCTTG-TAGGGTAG
125 CAG-TTTACAAAATTACCAAAATACCCTTGAT-GGGTAA
24073566 AATTACTGAAATACC
1 AATTACTGAAATACC
24073581 ATTGTAGGGT
Statistics
Matches: 147, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
159 1 0.01
160 18 0.12
161 103 0.70
162 25 0.17
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (161 bp):
AATTACTGAAATACCCTCGATTTGTAAAATTACAAAAGTACCCCCGATTTATAAAATTACCCAAA
TACCGTCAATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCAGTTT
ACAAAATTACCAAAATACCCTTGATGGGTAA
Found at i:24073608 original size:188 final size:188
Alignment explanation
Indices: 24073268--24073608 Score: 418
Period size: 188 Copynumber: 1.8 Consensus size: 188
24073258 CCCCCACTTG
*
24073268 TAAAATTACCAAAGTACCCCCGATTTATAAAATTATCGAAATACCGTCAATTGTAAAATTACTAA
1 TAAAATTACCAAAGTACCCCCGATTTATAAAATTATCAAAATACCGTCAATTGTAAAATTACTAA
* * ** *
24073333 AATACCCTCAATTTGTAAAATTATCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTTGA
66 AATACCCTCAATTTATAAAATTACCGAAATACCCTCAGTGGGCAAAATTACTAAAATACCATTGA
** * *
24073398 TTTGTAAAATTACTAGAATACCCTCGATTTGTATAATTACAAAAGTACCCCCAGTTTA
131 TGGGTAAAATTACCAAAATACCCTCGATTTGTATAATTACAAAAGTACCCCCAGTTTA
* * * ** *
24073456 TAAAATTACCCAAA-TATCCTCGATTTGTAAAATTATCAAAATACCGTTGATTGTAAAATTACTG
1 TAAAATTA-CCAAAGTACCCCCGATTTATAAAATTATCAAAATACCGTCAATTGTAAAATTACTA
** * * * * *
24073520 AAATACCCTTGATTTATAAAGTTACCGAAATACCCT-TGTAGGGTAGAATTACTGAAATACCATT
65 AAATACCCTCAATTTATAAAATTACCGAAATACCCTCAGT-GGGCAAAATTACTAAAATACCATT
*
24073584 G-TAGGGTAGAATTACCAAAATACCC
129 GAT-GGGTAAAATTACCAAAATACCC
24073609 CTGTAGGGTA
Statistics
Matches: 126, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
187 3 0.02
188 118 0.94
189 5 0.04
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (188 bp):
TAAAATTACCAAAGTACCCCCGATTTATAAAATTATCAAAATACCGTCAATTGTAAAATTACTAA
AATACCCTCAATTTATAAAATTACCGAAATACCCTCAGTGGGCAAAATTACTAAAATACCATTGA
TGGGTAAAATTACCAAAATACCCTCGATTTGTATAATTACAAAAGTACCCCCAGTTTA
Found at i:24073626 original size:81 final size:81
Alignment explanation
Indices: 24073541--24074163 Score: 740
Period size: 81 Copynumber: 7.7 Consensus size: 81
24073531 ATTTATAAAG
* * *
24073541 TTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCATTGTAGGGTAGAATTACCAAAATA
1 TTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATA
*
24073606 CCCCTGTAGGGTAGAA
66 CCCTTGTAGGGTAGAA
** *
24073622 TTACCGAAATACCCCTGTAATGTAGAATTACTGAAATACCAC-TGTAAGGTAGAATTACCGAAAT
1 TTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACC-CTTGTAGGGTAGAATTACCGAAAT
* * *
24073686 GCCCCTCTAGGGTAGAA
65 ACCCTTGTAGGGTAGAA
* * * **
24073703 TTACTG---TACCCCTATAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAATTATTGAAATA
1 TTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATA
*
24073765 CCCTTGTATGGTAGAA
66 CCCTTGTAGGGTAGAA
* * * * * *
24073781 TTATCGAAATACCCTTGTATGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTATCGAAATA
1 TTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATA
*
24073846 CCCCTG-AGGGGTAGAA
66 CCCTTGTA-GGGTAGAA
* * *
24073862 TTACTGAAATACCCCTATAGGGTAGAATTA-TCGAAATACCCTTGTAGGGTAGTAA-TACTGAAA
1 TTACCGAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCTTGTAGGGTAG-AATTACCGAAA
*
24073925 TATCCTTGTAGGGTAGAA
64 TACCCTTGTAGGGTAGAA
* * * *
24073943 ATACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACTCC-TGTAGGATAGAAATACCGAAAT
1 TTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC-CCTTGTAGGGTAGAATTACCGAAAT
*
24074007 AACCTTGTAGGGTAGAA
65 ACCCTTGTAGGGTAGAA
* * * * * *
24074024 ATATCGAAATACCCCTGTAGGGTAGAATTTCTGAAATACCCTTATAGGATAGAATTACTGAAATA
1 TTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATA
24074089 CCCTTGTAGGGTAGAA
66 CCCTTGTAGGGTAGAA
* * ** * * *
24074105 ATACCGAAATACCCCTATAGGGTAGAATTGTTGAGATACCCTTGTGGGGTAAAATTACC
1 TTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACC
24074164 ATTTTGCCCC
Statistics
Matches: 465, Mismatches: 64, Indels: 26
0.84 0.12 0.05
Matches are distributed among these distances:
77 1 0.00
78 63 0.14
80 6 0.01
81 389 0.84
82 6 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (81 bp):
TTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATA
CCCTTGTAGGGTAGAA
Found at i:24074124 original size:54 final size:54
Alignment explanation
Indices: 24073541--24074163 Score: 718
Period size: 54 Copynumber: 11.6 Consensus size: 54
24073531 ATTTATAAAG
* * * *
24073541 TTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCATTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
** * **
24073595 TTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAATGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
* * * * *
24073649 TTACTGAAATACCACTGTAAGGTAGAATTACCGAAATGCCCCTCTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
* * *
24073703 TTACTG---TACCCCTATAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
* * * * *
24073754 TTATTGAAATACCCTTGTATGGTAGAATTATCGAAATACCCTTGTATGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
* * *
24073808 TTATTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTG-AGGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTA-GGGTAGAA
* *
24073862 TTACTGAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGTAA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG-AA
* * * *
24073917 -TACTGAAATATCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
* * * * *
24073970 TTATTGAAATACTCCTGTAGGATAGAAATACCGAAATAACCTTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
* * * * *
24074024 ATA-TCGAAATACCCCTGTAGGGTAGAATTTCTGAAATACCCTTATAGGATAGAA
1 TTACT-GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
* * * *
24074078 TTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
** * * * *
24074132 TTGTTGAGATACCCTTGTGGGGTAAAATTACC
1 TTACTGAAATACCCCTGTAGGGTAGAATTACC
24074164 ATTTTGCCCC
Statistics
Matches: 488, Mismatches: 72, Indels: 18
0.84 0.12 0.03
Matches are distributed among these distances:
51 43 0.09
53 4 0.01
54 437 0.90
55 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (54 bp):
TTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
Found at i:24074494 original size:20 final size:20
Alignment explanation
Indices: 24074454--24074494 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
24074444 TGTCTGCCAT
*
24074454 TATTGTGGGCTTCGTATCGA
1 TATTGTGGGCTTCGTACCGA
* *
24074474 TATTGTGGGTTTCGTGCCGA
1 TATTGTGGGCTTCGTACCGA
24074494 T
1 T
24074495 TATAGACCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.15, G:0.32, T:0.41
Consensus pattern (20 bp):
TATTGTGGGCTTCGTACCGA
Found at i:24074543 original size:22 final size:22
Alignment explanation
Indices: 24074511--24074569 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
24074501 CCCGTTATAG
*
24074511 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
24074533 ATGGCTTTGTGCCATCTTGATT
1 ATGGCTTTGTGCCAACCTAAAT
*
24074555 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
24074570 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:24074757 original size:27 final size:26
Alignment explanation
Indices: 24074727--24074834 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
24074717 ATTCTGTTAA
* *
24074727 GTGGCTTTGCCACATTATCTAATTCTG
1 GTGGCTATGCCACAATATCT-ATTCTG
*
24074754 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTATTCTG
*
24074781 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTAT-TCTG
* * * * *
24074808 GTGACTCTGTCACAATATATGTTCTG
1 GTGGCTATGCCACAATATCTATTCTG
24074834 G
1 G
24074835 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.19
27 51 0.73
28 6 0.09
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTATTCTG
Found at i:24074785 original size:54 final size:53
Alignment explanation
Indices: 24074727--24074834 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 53
24074717 ATTCTGTTAA
* * * *
24074727 GTGGCTTTGCCACATTATCTA-ATTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATA-TCTGGTGACTATGCCAC-AATATATGTTCTG
* *
24074781 GTGGCTCTGCCACAATATCTATATCTGGTGACTCTGTCACAATATATGTTCTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATATGTTCTG
24074834 G
1 G
24074835 CAGCCATGCT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 13 0.28
54 33 0.70
55 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATATGTTCTG
Found at i:24075009 original size:25 final size:25
Alignment explanation
Indices: 24074955--24075016 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
24074945 CATTCACATT
* * *
24074955 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
24074980 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
*
24075005 TTGATTCTGATT
1 CTGATTCTGATT
24075017 TTGATTCTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:24075082 original size:31 final size:31
Alignment explanation
Indices: 24074974--24075085 Score: 111
Period size: 31 Copynumber: 3.6 Consensus size: 31
24074964 ATTCTGTTAC
* * *
24074974 CTGATACTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTAATTCTGTCACCTAGTT
* * * *
24075005 TTGATTCTGATTTTGATTCTGGTCA-AT-GTT
1 CTGATTCTGATTCTAATTCT-GTCACCTAGTT
*
24075035 ACCTAATTCTGATTCTAATTCTGTCACCTAGTT
1 --CTGATTCTGATTCTAATTCTGTCACCTAGTT
24075068 CTGATTCTGATTCTAATT
1 CTGATTCTGATTCTAATT
24075086 GTGACTGTGA
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
30 2 0.03
31 39 0.60
32 21 0.32
33 3 0.05
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.46
Consensus pattern (31 bp):
CTGATTCTGATTCTAATTCTGTCACCTAGTT
Found at i:24077156 original size:27 final size:26
Alignment explanation
Indices: 24077126--24077411 Score: 236
Period size: 27 Copynumber: 10.7 Consensus size: 26
24077116 CCCCAGTTGA
* *
24077126 AAAATTACCAAAGTACCCCCGGTTTAT
1 AAAATTACCAAA-TACCCTCGGTTTGT
* * *
24077153 AAAATTACCGAAATATCGTC-GATTGT
1 AAAATTACC-AAATACCCTCGGTTTGT
* *
24077179 AAAATTACTAAAATACCCTCGATTTGT
1 AAAATTAC-CAAATACCCTCGGTTTGT
*
24077206 AAAATTACCGAAATACCCTCAGTTTGT
1 AAAATTACC-AAATACCCTCGGTTTGT
* *
24077233 AAAA-TACTGAAATACCCTCGATTTGT
1 AAAATTAC-CAAATACCCTCGGTTTGT
* **
24077259 AAAATTACTAAAATACCCTCGACTTGT
1 AAAATTAC-CAAATACCCTCGGTTTGT
* *
24077286 AAAATTACCAAAGTACCCCCGGTTTAT
1 AAAATTACCAAA-TACCCTCGGTTTGT
* * *
24077313 AAAATTACACCAATATCCTCGATTTGT
1 AAAATTAC-CAAATACCCTCGGTTTGT
* * *
24077340 AAAATTACCGAAATACCGT-TGATTGT
1 AAAATTACC-AAATACCCTCGGTTTGT
* * *
24077366 AAAATTACTAAAATACCCTCGATTTAT
1 AAAATTAC-CAAATACCCTCGGTTTGT
24077393 AAAATTACCGAAATACCCT
1 AAAATTACC-AAATACCCT
24077412 TGTAGGGTAG
Statistics
Matches: 206, Mismatches: 41, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
26 66 0.32
27 134 0.65
28 6 0.03
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAATACCCTCGGTTTGT
Found at i:24077183 original size:53 final size:53
Alignment explanation
Indices: 24077126--24077410 Score: 247
Period size: 53 Copynumber: 5.3 Consensus size: 53
24077116 CCCCAGTTGA
* * *
24077126 AAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAAATATCGTCGA-TTGT
1 AAAATTACCAAA-TACCCCCGATTTATAAAATTACCGAAATACCCTCGACTTGT
* * * *
24077179 AAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-AGTTTGT
1 AAAATTAC-CAAATACCCCCGATTTATAAAATTACCGAAATACCCTCGA-CTTGT
* * * **
24077233 AAAA-TACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGACTTGT
1 AAAATTAC-CAAATACCCCCGATTTATAAAATTACCGAAATACCCTCGACTTGT
* * * *
24077286 AAAATTACCAAAGTACCCCCGGTTTATAAAATTACAC-CAATATCCTCGATTTGT
1 AAAATTACCAAA-TACCCCCGATTTATAAAATTAC-CGAAATACCCTCGACTTGT
*** * ** * *
24077340 AAAATTACCGAAATACCGTTGA-TTGTAAAATTACTAAAATACCCTCGATTTAT
1 AAAATTACC-AAATACCCCCGATTTATAAAATTACCGAAATACCCTCGACTTGT
24077393 AAAATTACCGAAATACCC
1 AAAATTACC-AAATACCC
24077411 TTGTAGGGTA
Statistics
Matches: 195, Mismatches: 28, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
52 1 0.01
53 129 0.66
54 62 0.32
55 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (53 bp):
AAAATTACCAAATACCCCCGATTTATAAAATTACCGAAATACCCTCGACTTGT
Found at i:24077236 original size:80 final size:80
Alignment explanation
Indices: 24077101--24077407 Score: 381
Period size: 80 Copynumber: 3.8 Consensus size: 80
24077091 CTAGCTTACC
* *
24077101 AAATTACTAAAATACCC-CCAGTTGAAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAA
*
24077165 ATATCGTCGA-TTGTA
65 ATATCCTCGATTTGTA
* * * *
24077180 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAA-TACCCTCAGTTTGTAAAA-TACTGA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACC-AAAGTACCCCCGGTTTATAAAATTACCGA
*
24077243 AATACCCTCGATTTGTA
64 AATATCCTCGATTTGTA
*
24077260 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACAC-C
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTAC-CGA
24077324 AATATCCTCGATTTGTA
64 AATATCCTCGATTTGTA
** * * * * * *
24077341 AAATTACCGAAATACCGTTGATTGTAAAATTACTAAAATACCCTCGATTTATAAAATTACCGAAA
1 AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAAA
24077406 TA
66 TA
24077408 CCCTTGTAGG
Statistics
Matches: 196, Mismatches: 25, Indels: 13
0.84 0.11 0.06
Matches are distributed among these distances:
79 35 0.18
80 122 0.62
81 39 0.20
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAAA
TATCCTCGATTTGTA
Found at i:24077425 original size:27 final size:27
Alignment explanation
Indices: 24077395--24077995 Score: 700
Period size: 27 Copynumber: 22.3 Consensus size: 27
24077385 CGATTTATAA
*
24077395 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
24077422 AATTACTGAAATACCATTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
24077449 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * ** *
24077476 AATTACCGAAATACCCTTATAACGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
24077503 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24077530 AATTAACGAAATACCCCTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24077557 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24077584 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
24077611 AATTATCGAAATACCATTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
24077638 AATTATTGAAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
24077665 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
24077692 AATTATTGAAATACCCCTATAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
24077719 AATTATCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
24077746 TAA-TACCGAAATACCCTTGTAGGGTAG
1 -AATTACCGAAATACCCCTGTAGGGTAG
*
24077773 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
24077800 AATTATTGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24077827 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24077854 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24077881 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
24077908 AATTACCGAAATACCCTTGTACAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24077935 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
24077962 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
24077989 AATTACC
1 AATTACC
24077996 ATTTTTCCCC
Statistics
Matches: 488, Mismatches: 84, Indels: 4
0.85 0.15 0.01
Matches are distributed among these distances:
26 2 0.00
27 484 0.99
28 2 0.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:24078815 original size:25 final size:25
Alignment explanation
Indices: 24078787--24078848 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
24078777 CATTCACATT
* * *
24078787 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
24078812 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
24078837 CTGATTCTGATT
1 CTGATTCTGATT
24078849 TTGATTCTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:24078823 original size:6 final size:6
Alignment explanation
Indices: 24078784--24078957 Score: 61
Period size: 6 Copynumber: 28.3 Consensus size: 6
24078774 TTGCATTCAC
* * * *
24078784 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
24078834 ATTCTG ATTCTG ATTTTG ATTCTG GTTCTG -TTACCTG ATTTTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * * * *
24078883 ATTTTG -TCACCTA ATTCTG ATTCTG ATTCTA ATTGTG ACTCTA ATTCTA
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
24078932 ATACTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
24078958 AATGTTTCTT
Statistics
Matches: 120, Mismatches: 34, Indels: 28
0.66 0.19 0.15
Matches are distributed among these distances:
5 7 0.06
6 98 0.82
7 10 0.08
8 5 0.04
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:24078887 original size:37 final size:37
Alignment explanation
Indices: 24078813--24078888 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
24078803 TACCTGATAC
*
24078813 TGATTCTGATTCTGTCACCTAATTCTGATTCTGATTT
1 TGATTCTGATTCTGTCACCTAATTCTGATTCTAATTT
* * * *
24078850 TGATTCTGGTTCTGTTACCTGATTTTGATTCTAATTT
1 TGATTCTGATTCTGTCACCTAATTCTGATTCTAATTT
24078887 TG
1 TG
24078889 TCACCTAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (37 bp):
TGATTCTGATTCTGTCACCTAATTCTGATTCTAATTT
Found at i:24078891 original size:62 final size:62
Alignment explanation
Indices: 24078788--24078910 Score: 192
Period size: 62 Copynumber: 2.0 Consensus size: 62
24078778 ATTCACATTC
* *
24078788 TGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTT
1 TGATTCTGATTCTGTTACCTGATACTGATTCTAATTCTGTCACCTAATTCTGATTCTGATTT
* ** *
24078850 TGATTCTGGTTCTGTTACCTGATTTTGATTCTAATTTTGTCACCTAATTCTGATTCTGATT
1 TGATTCTGATTCTGTTACCTGATACTGATTCTAATTCTGTCACCTAATTCTGATTCTGATT
24078911 CTAATTGTGA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (62 bp):
TGATTCTGATTCTGTTACCTGATACTGATTCTAATTCTGTCACCTAATTCTGATTCTGATTT
Done.